#chrom	start	stop	peakID	Z-score	strand	members_of_nearest_promoter_on_the_left	offset	promoter_strand	members_of_2nd_nearest_promoter_on_the_left	offset	promoter_strand	members_of_3rd_nearest_promoter_on_the_left	offset	promoter_strand	members_of_nearest_promoter_on_the_right	offset	promoter_strand	members_of_2nd_nearest_promoter_on_the_right	offset	promoter_strand	members_of_3rd_nearest_promoter_on_the_right	offset	promoter_strand	genes[member|symbol|gid|name](##-separated)	denovo_WM_21_site_number	binding_sites (WM_name:relative distance to peak center:posterior binding probability)
chr21	47604436	47604569	reg1000000.p1	22.805	+	TSC_hg19_v1_chr21_-_47604362 AK309847 AK304535 NM_001142854 NM_032261	-127	-	TSC_hg19_v1_chr21_-_47604340 BC084577	-156	-	AL136871 TSC_hg19_v1_chr21_-_47604330	-186	-	X87809 TSC_hg19_v1_chr21_-_47648594	44003	-	TSC_hg19_v1_chr21_-_47648618 AK226141 CU690148 DQ891234 DQ894418	44140	-	TSC_hg19_v1_chr21_-_47648679 D63807 S81221 BC035638	44175	-	AK309847|C21orf56|84221|chromosome 21 open reading frame 56##AK304535|C21orf56|84221|chromosome 21 open reading frame 56##NM_001142854|C21orf56|84221|chromosome 21 open reading frame 56##NM_032261|C21orf56|84221|chromosome 21 open reading frame 56##BC084577|C21orf56|84221|chromosome 21 open reading frame 56##AL136871|C21orf56|84221|chromosome 21 open reading frame 56##X87809|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##AK226141|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##DQ891234|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##DQ894418|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##D63807|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##S81221|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##BC035638|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)	0.0	
chr11	63953450	63953592	reg1000001.p2	20.703	+	TSC_hg19_v1_chr11_-_63933585 AF202922 BC000270 BC007297 BC008316 NM_014067	-19966	-	AF086206 BC003188 TSC_hg19_v1_chr11_-_63933439	-20200	-	AY358308 BC018370 NM_013280	-82221	+	NM_006819 TSC_hg19_v1_chr11_+_63953613	84	+	TSC_hg19_v1_chr11_+_63953652 AK291555	125	+	TSC_hg19_v1_chr11_+_63953675 BC002987 M86752 AK297319 AK225736	168	+	AF202922|MACROD1|28992|MACRO domain containing 1##BC000270|MACROD1|28992|MACRO domain containing 1##BC007297|MACROD1|28992|MACRO domain containing 1##BC008316|MACROD1|28992|MACRO domain containing 1##NM_014067|MACROD1|28992|MACRO domain containing 1##AF086206|MACROD1|28992|MACRO domain containing 1##BC003188|MACROD1|28992|MACRO domain containing 1##AY358308|FLRT1|23769|fibronectin leucine rich transmembrane protein 1##BC018370|FLRT1|23769|fibronectin leucine rich transmembrane protein 1##NM_013280|FLRT1|23769|fibronectin leucine rich transmembrane protein 1##NM_006819|STIP1|10963|stress-induced-phosphoprotein 1##AK291555|STIP1|10963|stress-induced-phosphoprotein 1##BC002987|STIP1|10963|stress-induced-phosphoprotein 1##M86752|STIP1|10963|stress-induced-phosphoprotein 1##AK297319|STIP1|10963|stress-induced-phosphoprotein 1##AK225736|STIP1|10963|stress-induced-phosphoprotein 1	1.284565	denovo_WM_21:1:0.910	denovo_WM_21:41:0.374
chr17	26368506	26368679	reg1000003.p2	19.786	+	TSC_hg19_v1_chr17_-_26220392 AK055808 AK310926 NM_001076680	-148201	-	BC130283 BC144126 U05810 L09210 X73029 AF068236 AK304252 NM_000625 TSC_hg19_v1_chr17_-_26127556	-241077	-	U31511 TSC_hg19_v1_chr17_-_26127402	-241194	-	TSC_hg19_v1_chr17_+_26369661 AK315315 AF197898 NM_016231 AF180819	1061	+	AB384832 AK024686 TSC_hg19_v1_chr17_+_26370066	1409	+	NM_014573 TSC_hg19_v1_chr17_+_26646214 L19183 AK299511 AK307678 BC017362 BC091504 AK293331	277601	+	AK055808|C17orf108|201229|chromosome 17 open reading frame 108##NM_001076680|C17orf108|201229|chromosome 17 open reading frame 108##BC130283|NOS2|4843|nitric oxide synthase 2, inducible##BC144126|NOS2|4843|nitric oxide synthase 2, inducible##U05810|NOS2|4843|nitric oxide synthase 2, inducible##L09210|NOS2|4843|nitric oxide synthase 2, inducible##X73029|NOS2|4843|nitric oxide synthase 2, inducible##AF068236|NOS2|4843|nitric oxide synthase 2, inducible##AK304252|NOS2|4843|nitric oxide synthase 2, inducible##NM_000625|NOS2|4843|nitric oxide synthase 2, inducible##U31511|NOS2|4843|nitric oxide synthase 2, inducible##AK315315|NLK|51701|nemo-like kinase##AF197898|NLK|51701|nemo-like kinase##NM_016231|NLK|51701|nemo-like kinase##AF180819|NLK|51701|nemo-like kinase##AK024686|NLK|51701|nemo-like kinase##NM_014573|TMEM97|27346|transmembrane protein 97##L19183|TMEM97|27346|transmembrane protein 97##AK299511|TMEM97|27346|transmembrane protein 97##AK307678|TMEM97|27346|transmembrane protein 97##BC017362|TMEM97|27346|transmembrane protein 97##BC091504|TMEM97|27346|transmembrane protein 97##AK293331|TMEM97|27346|transmembrane protein 97	1.371726	denovo_WM_21:-28:0.900	denovo_WM_21:-70:0.406
chr11	59383371	59383555	reg1000007.p1	19.133	+	TSC_hg19_v1_chr11_-_59383232 BC011581	-253	-	TSC_hg19_v1_chr11_-_59383172 BC051350 BC063121	-294	-	NM_001004711	-101078	+	AF185696 M86917 NM_002556	153	-	AM392959 AB527197 TSC_hg19_v1_chr11_-_59436483 AL831992 AK127943	52962	-	TSC_hg19_v1_chr11_-_59436490 NM_152716	53044	-	BC011581|OSBP|5007|oxysterol binding protein##BC051350|OSBP|5007|oxysterol binding protein##BC063121|OSBP|5007|oxysterol binding protein##NM_001004711|OR4D9|390199|olfactory receptor, family 4, subfamily D, member 9##AF185696|OSBP|5007|oxysterol binding protein##M86917|OSBP|5007|oxysterol binding protein##NM_002556|OSBP|5007|oxysterol binding protein##AM392959|PATL1|219988|protein associated with topoisomerase II homolog 1 (yeast)##AL831992|PATL1|219988|protein associated with topoisomerase II homolog 1 (yeast)##AK127943|PATL1|219988|protein associated with topoisomerase II homolog 1 (yeast)##NM_152716|PATL1|219988|protein associated with topoisomerase II homolog 1 (yeast)	2.141597	denovo_WM_21:-16:0.238	denovo_WM_21:-36:0.947	denovo_WM_21:79:0.922
chr7	100184107	100184256	reg1000011.p2	18.845	+	TSC_hg19_v1_chr7_+_100183929 AK292240 NM_033506 BC032497 AK310487 AL136811 BC067293 BC051745	-179	+	TSC_hg19_v1_chr7_-_100183753 BC018529 NM_002319	-406	-	AB528535 DQ893565 DQ894240 TSC_hg19_v1_chr7_-_100183751 AK074833 AK302410	-444	-	AK302252 NM_001163499 NM_012172 AK301864	3042	+	NM_002593 TSC_hg19_v1_chr7_+_100199985 AK313748 BC000574 L33799 AB008549 AK298364 BC033205 DQ891923 DQ895108	15798	+	NM_001040097 TSC_hg19_v1_chr7_+_100209784	25588	+	AK292240|FBXO24|26261|F-box protein 24##NM_033506|FBXO24|26261|F-box protein 24##BC032497|FBXO24|26261|F-box protein 24##AK310487|FBXO24|26261|F-box protein 24##AL136811|FBXO24|26261|F-box protein 24##BC067293|FBXO24|26261|F-box protein 24##BC051745|FBXO24|26261|F-box protein 24##BC018529|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##NM_002319|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##DQ893565|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##DQ894240|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##AK074833|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##AK302410|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##AK302252|FBXO24|26261|F-box protein 24##NM_001163499|FBXO24|26261|F-box protein 24##NM_012172|FBXO24|26261|F-box protein 24##AK301864|FBXO24|26261|F-box protein 24##NM_002593|PCOLCE|5118|procollagen C-endopeptidase enhancer##AK313748|PCOLCE|5118|procollagen C-endopeptidase enhancer##BC000574|PCOLCE|5118|procollagen C-endopeptidase enhancer##L33799|PCOLCE|5118|procollagen C-endopeptidase enhancer##AB008549|PCOLCE|5118|procollagen C-endopeptidase enhancer##AK298364|PCOLCE|5118|procollagen C-endopeptidase enhancer##BC033205|PCOLCE|5118|procollagen C-endopeptidase enhancer##DQ891923|PCOLCE|5118|procollagen C-endopeptidase enhancer##DQ895108|PCOLCE|5118|procollagen C-endopeptidase enhancer##NM_001040097|MOSPD3|64598|motile sperm domain containing 3	0.948127	denovo_WM_21:2:0.695	denovo_WM_21:-38:0.253
chr17	45973315	45973481	reg1000004.p1	18.830	+	TSC_hg19_v1_chr17_-_45973143 AK127217	-248	-	BC103951 BC103952 BC103953 BC103954 AK127850 NM_199262	-40210	-	TSC_hg19_v1_chr17_-_45928530 AK127707	-44854	-	NM_003110 TSC_hg19_v1_chr17_+_45973601 BC005914 BC016680 BC033814	182	+	NM_018129 TSC_hg19_v1_chr17_+_46018965 AK001397 AK303665 AK303792 AK223242 AK303536 BC006525	45546	+	TSC_hg19_v1_chr17_+_46019041 AF468030	45648	+	BC103951|SP6|80320|Sp6 transcription factor##BC103952|SP6|80320|Sp6 transcription factor##BC103953|SP6|80320|Sp6 transcription factor##BC103954|SP6|80320|Sp6 transcription factor##AK127850|SP6|80320|Sp6 transcription factor##NM_199262|SP6|80320|Sp6 transcription factor##AK127707|SP6|80320|Sp6 transcription factor##NM_003110|SP2|6668|Sp2 transcription factor##BC005914|SP2|6668|Sp2 transcription factor##BC016680|SP2|6668|Sp2 transcription factor##BC033814|SP2|6668|Sp2 transcription factor##NM_018129|PNPO|55163|pyridoxamine 5'-phosphate oxidase##AK001397|PNPO|55163|pyridoxamine 5'-phosphate oxidase##AK303665|PNPO|55163|pyridoxamine 5'-phosphate oxidase##AK303792|PNPO|55163|pyridoxamine 5'-phosphate oxidase##AK223242|PNPO|55163|pyridoxamine 5'-phosphate oxidase##AK303536|PNPO|55163|pyridoxamine 5'-phosphate oxidase##BC006525|PNPO|55163|pyridoxamine 5'-phosphate oxidase##AF468030|PNPO|55163|pyridoxamine 5'-phosphate oxidase	0.69535	denovo_WM_21:-28:0.657
chr14	58765022	58765167	reg1000002.p1	18.684	+	TSC_hg19_v1_chr14_-_58764845 AK055868 BC034618 CR627086 BC104151 BC104152 BC112973 BC112974 AK297601	-261	-	TSC_hg19_v1_chr14_+_58711605 BC038990 D00762 DQ892645 DQ895883 AB464085 BT006711 BT019715 CR456933 CU688640	-53464	+	TSC_hg19_v1_chr14_+_58711570 AK315158 BC029402 BC005265	-53520	+	TSC_hg19_v1_chr14_+_58765261 NM_002892 NM_023000 NM_023001 AK307520 BC026230	147	+	TSC_hg19_v1_chr14_+_58765292 BC047301 S66427	224	+	AY358266 NM_207377 BC137557 BC137563 BC144709	97550	+	AK055868|FLJ31306|379025|uncharacterized LOC379025##BC034618|FLJ31306|379025|uncharacterized LOC379025##CR627086|FLJ31306|379025|uncharacterized LOC379025##BC104151|FLJ31306|379025|uncharacterized LOC379025##BC104152|FLJ31306|379025|uncharacterized LOC379025##BC112973|FLJ31306|379025|uncharacterized LOC379025##BC112974|FLJ31306|379025|uncharacterized LOC379025##BC038990|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##D00762|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##DQ892645|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##DQ895883|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##BT006711|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##BT019715|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##CR456933|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##AK315158|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##BC029402|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##BC005265|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##NM_002892|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##NM_023000|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##NM_023001|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##AK307520|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##BC026230|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##S66427|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##AY358266|TOMM20L|387990|translocase of outer mitochondrial membrane 20 homolog (yeast)-like##NM_207377|TOMM20L|387990|translocase of outer mitochondrial membrane 20 homolog (yeast)-like##BC137557|TOMM20L|387990|translocase of outer mitochondrial membrane 20 homolog (yeast)-like##BC137563|TOMM20L|387990|translocase of outer mitochondrial membrane 20 homolog (yeast)-like##BC144709|TOMM20L|387990|translocase of outer mitochondrial membrane 20 homolog (yeast)-like	1.515171	denovo_WM_21:5:0.717	denovo_WM_21:73:0.708
chr17	17875917	17876098	reg1000008.p2	18.440	+	TSC_hg19_v1_chr17_-_17875715 AK124331 AK295111 AK301944 AK303305 AK299872 AF467441 BC051650 AK294846 NM_001033551 NM_001082968	-266	-	TSC_hg19_v1_chr17_-_17740317 BC057388 NM_001005291 NM_004176	-135683	-	TSC_hg19_v1_chr17_-_17740301 U00968 BC063281	-135712	-	NM_001130090 NM_001130091 NM_001130092 NM_031294 TSC_hg19_v1_chr17_+_17876186 BC047873 AL136926 AK293011 BC040276 BC050419 BC050665 AK093317 AX748051	193	+	AM393241 CU678578 CU689282 AB528073 AF070584 BC032126 AF052185 AY203943 TSC_hg19_v1_chr17_-_17942481 BC004114 NM_145691 AK290257 AK294487 AK296382	66396	-	TSC_hg19_v1_chr17_+_17942750 BC041829 NM_024052 AK315083 AK074284 AK127580 BC000636	66800	+	AK124331|TOM1L2|146691|target of myb1-like 2 (chicken)##AK295111|TOM1L2|146691|target of myb1-like 2 (chicken)##AK301944|TOM1L2|146691|target of myb1-like 2 (chicken)##AK303305|TOM1L2|146691|target of myb1-like 2 (chicken)##AK299872|TOM1L2|146691|target of myb1-like 2 (chicken)##AF467441|TOM1L2|146691|target of myb1-like 2 (chicken)##BC051650|TOM1L2|146691|target of myb1-like 2 (chicken)##AK294846|TOM1L2|146691|target of myb1-like 2 (chicken)##NM_001033551|TOM1L2|146691|target of myb1-like 2 (chicken)##NM_001082968|TOM1L2|146691|target of myb1-like 2 (chicken)##BC057388|SREBF1|6720|sterol regulatory element binding transcription factor 1##NM_001005291|SREBF1|6720|sterol regulatory element binding transcription factor 1##NM_004176|SREBF1|6720|sterol regulatory element binding transcription factor 1##U00968|SREBF1|6720|sterol regulatory element binding transcription factor 1##BC063281|SREBF1|6720|sterol regulatory element binding transcription factor 1##NM_001130090|LRRC48|83450|leucine rich repeat containing 48##NM_001130091|LRRC48|83450|leucine rich repeat containing 48##NM_001130092|LRRC48|83450|leucine rich repeat containing 48##NM_031294|LRRC48|83450|leucine rich repeat containing 48##BC047873|LRRC48|83450|leucine rich repeat containing 48##AL136926|LRRC48|83450|leucine rich repeat containing 48##AK293011|LRRC48|83450|leucine rich repeat containing 48##BC040276|LRRC48|83450|leucine rich repeat containing 48##BC050419|LRRC48|83450|leucine rich repeat containing 48##BC050665|LRRC48|83450|leucine rich repeat containing 48##AK093317|LRRC48|83450|leucine rich repeat containing 48##AM393241|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AF070584|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##BC032126|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AF052185|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AY203943|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##BC004114|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##NM_145691|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AK290257|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AK294487|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##BC041829|C17orf39|79018|chromosome 17 open reading frame 39##NM_024052|C17orf39|79018|chromosome 17 open reading frame 39##AK315083|C17orf39|79018|chromosome 17 open reading frame 39##AK074284|C17orf39|79018|chromosome 17 open reading frame 39##AK127580|C17orf39|79018|chromosome 17 open reading frame 39##BC000636|C17orf39|79018|chromosome 17 open reading frame 39	0.206742	
chr19	6372587	6372729	reg1000013.p1	18.282	+	AY358858 AY427650 NM_032306	-215	+	TSC_hg19_v1_chr19_+_6361559 AK311973 Z50853 EF036491 DQ895823 EU176368	-11045	+	BC002956 NM_006012 TSC_hg19_v1_chr19_+_6361541	-11157	+	TSC_hg19_v1_chr19_+_6372773 BC004393	96	+	AK311956 TSC_hg19_v1_chr19_+_6372805 AK223336	154	+	AB528873 AF040962 NM_004158 BC143894	3218	-	AY358858|ALKBH7|84266|alkB, alkylation repair homolog 7 (E. coli)##AY427650|ALKBH7|84266|alkB, alkylation repair homolog 7 (E. coli)##NM_032306|ALKBH7|84266|alkB, alkylation repair homolog 7 (E. coli)##AK311973|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)##Z50853|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)##EF036491|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)##DQ895823|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)##EU176368|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)##BC002956|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)##NM_006012|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)##BC004393|ALKBH7|84266|alkB, alkylation repair homolog 7 (E. coli)##AK311956|ALKBH7|84266|alkB, alkylation repair homolog 7 (E. coli)##AK223336|ALKBH7|84266|alkB, alkylation repair homolog 7 (E. coli)##AF040962|PSPN|5623|persephin##NM_004158|PSPN|5623|persephin	0.116965	
chr12	53773609	53773794	reg1000012.p2	17.497	+	AY150674 NM_001173467	-43698	-	AB527932 EU446563 BC101549 BC113613 AY150673 AF477981 NM_152860 AF466179	-44218	-	TSC_hg19_v1_chr12_-_53715374 AK293342 BC000659 BC018836 AY237818 NM_001173466 NM_015665	-58324	-	TSC_hg19_v1_chr12_+_53773935 BC062539 NM_001251825 NM_138473 AF255682 AJ272134	289	+	BC043224 NM_003109	723	+	NM_001164690 NM_001164691 NM_020547 AK313593 AF172932 BC126316 BC136356 AY714878 HQ258327	43977	+	AY150674|SP7|121340|Sp7 transcription factor##NM_001173467|SP7|121340|Sp7 transcription factor##EU446563|SP7|121340|Sp7 transcription factor##BC101549|SP7|121340|Sp7 transcription factor##BC113613|SP7|121340|Sp7 transcription factor##AY150673|SP7|121340|Sp7 transcription factor##AF477981|SP7|121340|Sp7 transcription factor##NM_152860|SP7|121340|Sp7 transcription factor##AF466179|SP7|121340|Sp7 transcription factor##AK293342|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##BC000659|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##BC018836|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##AY237818|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##NM_001173466|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##NM_015665|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##BC062539|SP1|6667|Sp1 transcription factor##NM_001251825|SP1|6667|Sp1 transcription factor##NM_138473|SP1|6667|Sp1 transcription factor##AF255682|SP1|6667|Sp1 transcription factor##AJ272134|SP1|6667|Sp1 transcription factor##BC043224|SP1|6667|Sp1 transcription factor##NM_003109|SP1|6667|Sp1 transcription factor##NM_001164690|AMHR2|269|anti-Mullerian hormone receptor, type II##NM_001164691|AMHR2|269|anti-Mullerian hormone receptor, type II##NM_020547|AMHR2|269|anti-Mullerian hormone receptor, type II##AK313593|AMHR2|269|anti-Mullerian hormone receptor, type II##AF172932|AMHR2|269|anti-Mullerian hormone receptor, type II##BC126316|AMHR2|269|anti-Mullerian hormone receptor, type II##BC136356|AMHR2|269|anti-Mullerian hormone receptor, type II##AY714878|AMHR2|269|anti-Mullerian hormone receptor, type II##HQ258327|AMHR2|269|anti-Mullerian hormone receptor, type II	1.086715	denovo_WM_21:45:0.635	denovo_WM_21:-89:0.411
chr19	14117230	14117401	reg1000009.p1	17.426	+	BC049826 TSC_hg19_v1_chr19_-_14117133 AK309824 NM_002918	-186	-	TSC_hg19_v1_chr19_-_14116878 X58964	-401	-	AK027100 AK298489 NM_001146254 NM_001146255	-53118	-	BC140935 AB076563 AF447451 BC110069 NM_080864	21672	+	NM_004843	24946	+	TSC_hg19_v1_chr19_+_14142542 AF053004 AF106912	25199	+	BC049826|RFX1|5989|regulatory factor X, 1 (influences HLA class II expression)##AK309824|RFX1|5989|regulatory factor X, 1 (influences HLA class II expression)##NM_002918|RFX1|5989|regulatory factor X, 1 (influences HLA class II expression)##X58964|RFX1|5989|regulatory factor X, 1 (influences HLA class II expression)##AK027100|PODNL1|79883|podocan-like 1##AK298489|PODNL1|79883|podocan-like 1##NM_001146254|PODNL1|79883|podocan-like 1##NM_001146255|PODNL1|79883|podocan-like 1##BC140935|RLN3|117579|relaxin 3##AB076563|RLN3|117579|relaxin 3##AF447451|RLN3|117579|relaxin 3##BC110069|RLN3|117579|relaxin 3##NM_080864|RLN3|117579|relaxin 3##NM_004843|IL27RA|9466|interleukin 27 receptor, alpha##AF053004|IL27RA|9466|interleukin 27 receptor, alpha##AF106912|IL27RA|9466|interleukin 27 receptor, alpha	0.010459	
chr11	63953199	63953372	reg1000001.p1	17.293	+	TSC_hg19_v1_chr11_-_63933585 AF202922 BC000270 BC007297 BC008316 NM_014067	-19730	-	AF086206 BC003188 TSC_hg19_v1_chr11_-_63933439	-19964	-	AY358308 BC018370 NM_013280	-81985	+	NM_006819 TSC_hg19_v1_chr11_+_63953613	320	+	TSC_hg19_v1_chr11_+_63953652 AK291555	361	+	TSC_hg19_v1_chr11_+_63953675 BC002987 M86752 AK297319 AK225736	404	+	AF202922|MACROD1|28992|MACRO domain containing 1##BC000270|MACROD1|28992|MACRO domain containing 1##BC007297|MACROD1|28992|MACRO domain containing 1##BC008316|MACROD1|28992|MACRO domain containing 1##NM_014067|MACROD1|28992|MACRO domain containing 1##AF086206|MACROD1|28992|MACRO domain containing 1##BC003188|MACROD1|28992|MACRO domain containing 1##AY358308|FLRT1|23769|fibronectin leucine rich transmembrane protein 1##BC018370|FLRT1|23769|fibronectin leucine rich transmembrane protein 1##NM_013280|FLRT1|23769|fibronectin leucine rich transmembrane protein 1##NM_006819|STIP1|10963|stress-induced-phosphoprotein 1##AK291555|STIP1|10963|stress-induced-phosphoprotein 1##BC002987|STIP1|10963|stress-induced-phosphoprotein 1##M86752|STIP1|10963|stress-induced-phosphoprotein 1##AK297319|STIP1|10963|stress-induced-phosphoprotein 1##AK225736|STIP1|10963|stress-induced-phosphoprotein 1	1.833382	denovo_WM_21:-54:0.947	denovo_WM_21:67:0.792
chr9	130829691	130829850	reg1000024.p1	17.267	+	AK122729 NM_197956	-172	-	TSC_hg19_v1_chr9_-_130742813 AK058004 NM_001035254	-86961	-	BC137087 BC137088 BC047949 NM_203305 BC142952	-116839	-	TSC_hg19_v1_chr9_+_130830492 AK290991 NM_001006641	713	+	AJ619990 TSC_hg19_v1_chr9_+_130830643	849	+	NM_001006642 AJ619991	24364	+	AK122729|NAIF1|203245|nuclear apoptosis inducing factor 1##NM_197956|NAIF1|203245|nuclear apoptosis inducing factor 1##AK058004|FAM102A|399665|family with sequence similarity 102, member A##NM_001035254|FAM102A|399665|family with sequence similarity 102, member A##BC137087|FAM102A|399665|family with sequence similarity 102, member A##BC137088|FAM102A|399665|family with sequence similarity 102, member A##BC047949|FAM102A|399665|family with sequence similarity 102, member A##NM_203305|FAM102A|399665|family with sequence similarity 102, member A##BC142952|FAM102A|399665|family with sequence similarity 102, member A##AK290991|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25##NM_001006641|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25##AJ619990|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25##NM_001006642|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25##AJ619991|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25	0.066358	
chr16	30621709	30621839	reg1000036.p1	17.194	+	AK310459 AB065282 BC014000 NM_138447 TSC_hg19_v1_chr16_-_30621684	-118	-	TSC_hg19_v1_chr16_-_30597103 AK309511 EU446576 AK292465 BC040642 AK298848 AK056692 NM_152458	-24799	-	NM_001024683 NM_145271	-38047	-	TSC_hg19_v1_chr16_+_30662098 CR936781 AK125716	40326	+	TSC_hg19_v1_chr16_+_30662286 BC010232 BC050677 NM_024031 BC011573 BC000119 AK074783	40491	+	NM_001105079	54003	+	AK310459|ZNF689|115509|zinc finger protein 689##AB065282|ZNF689|115509|zinc finger protein 689##BC014000|ZNF689|115509|zinc finger protein 689##NM_138447|ZNF689|115509|zinc finger protein 689##AK309511|ZNF785|146540|zinc finger protein 785##EU446576|ZNF785|146540|zinc finger protein 785##AK292465|ZNF785|146540|zinc finger protein 785##BC040642|ZNF785|146540|zinc finger protein 785##AK298848|ZNF785|146540|zinc finger protein 785##AK056692|ZNF785|146540|zinc finger protein 785##NM_152458|ZNF785|146540|zinc finger protein 785##NM_001024683|ZNF688|146542|zinc finger protein 688##NM_145271|ZNF688|146542|zinc finger protein 688##CR936781|PRR14|78994|proline rich 14##AK125716|PRR14|78994|proline rich 14##BC010232|PRR14|78994|proline rich 14##BC050677|PRR14|78994|proline rich 14##NM_024031|PRR14|78994|proline rich 14##BC011573|PRR14|78994|proline rich 14##BC000119|PRR14|78994|proline rich 14##AK074783|PRR14|78994|proline rich 14##NM_001105079|FBRS|64319|fibrosin	0.627775	denovo_WM_21:-10:0.266	denovo_WM_21:20:0.346
chr17	61627591	61627774	reg1000029.p1	17.178	+	TSC_hg19_v1_chr17_+_61600692 AK091877 AX747233 NM_030779 NM_173092 BC006334 AK298363 AK296498 AF311913	-26958	+	NM_001178057 NM_152830 BC036375 X16295 AK301988 AK302019 M26657 M29981	-65491	+	TSC_hg19_v1_chr17_+_61554421 AK296566 AK309514 NM_000789 AK300516 AB208971 J04144	-73254	+	TSC_hg19_v1_chr17_+_61627834 AK294925 NM_005828	144	+	TSC_hg19_v1_chr17_+_61627843 BC001264	163	+	TSC_hg19_v1_chr17_+_61627855 AK303212	182	+	AK091877|KCNH6|81033|potassium voltage-gated channel, subfamily H (eag-related), member 6##NM_030779|KCNH6|81033|potassium voltage-gated channel, subfamily H (eag-related), member 6##NM_173092|KCNH6|81033|potassium voltage-gated channel, subfamily H (eag-related), member 6##BC006334|KCNH6|81033|potassium voltage-gated channel, subfamily H (eag-related), member 6##AK298363|KCNH6|81033|potassium voltage-gated channel, subfamily H (eag-related), member 6##AK296498|KCNH6|81033|potassium voltage-gated channel, subfamily H (eag-related), member 6##AF311913|KCNH6|81033|potassium voltage-gated channel, subfamily H (eag-related), member 6##NM_001178057|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##NM_152830|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##X16295|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##AK301988|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##AK302019|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##M26657|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##M29981|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##AK296566|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##AK309514|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##NM_000789|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##AK300516|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##AB208971|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##J04144|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##AK294925|DCAF7|10238|DDB1 and CUL4 associated factor 7##NM_005828|DCAF7|10238|DDB1 and CUL4 associated factor 7##BC001264|DCAF7|10238|DDB1 and CUL4 associated factor 7##AK303212|DCAF7|10238|DDB1 and CUL4 associated factor 7	0.928334	denovo_WM_21:36:0.846
chr11	67275695	67275840	reg1000028.p1	17.008	+	TSC_hg19_v1_chr11_-_67275634 BT006909 CR457050 CR542042 AK310197 AK001498 BC016704 AF089814	-134	-	TSC_hg19_v1_chr11_-_67272835 AF334584 BC022230 NM_001130848 NM_004910	-2934	-	X98654 TSC_hg19_v1_chr11_-_67271900	-3893	-	BC002850 NM_005851 AK308725 TSC_hg19_v1_chr11_-_67276169	372	-	AB528802 AF169154 BC018476 NM_016366	15081	-	NM_000852 TSC_hg19_v1_chr11_+_67351145	75339	+	BT006909|CDK2AP2|10263|cyclin-dependent kinase 2 associated protein 2##CR457050|CDK2AP2|10263|cyclin-dependent kinase 2 associated protein 2##CR542042|CDK2AP2|10263|cyclin-dependent kinase 2 associated protein 2##AK310197|CDK2AP2|10263|cyclin-dependent kinase 2 associated protein 2##AK001498|CDK2AP2|10263|cyclin-dependent kinase 2 associated protein 2##BC016704|CDK2AP2|10263|cyclin-dependent kinase 2 associated protein 2##AF089814|CDK2AP2|10263|cyclin-dependent kinase 2 associated protein 2##AF334584|PITPNM1|9600|phosphatidylinositol transfer protein, membrane-associated 1##BC022230|PITPNM1|9600|phosphatidylinositol transfer protein, membrane-associated 1##NM_001130848|PITPNM1|9600|phosphatidylinositol transfer protein, membrane-associated 1##NM_004910|PITPNM1|9600|phosphatidylinositol transfer protein, membrane-associated 1##X98654|PITPNM1|9600|phosphatidylinositol transfer protein, membrane-associated 1##BC002850|CDK2AP2|10263|cyclin-dependent kinase 2 associated protein 2##NM_005851|CDK2AP2|10263|cyclin-dependent kinase 2 associated protein 2##AF169154|CABP2|51475|calcium binding protein 2##BC018476|CABP2|51475|calcium binding protein 2##NM_016366|CABP2|51475|calcium binding protein 2##NM_000852|GSTP1|2950|glutathione S-transferase pi 1	1.740095	denovo_WM_21:18:0.856	denovo_WM_21:-21:0.799
chr17	38574229	38574395	reg1000039.p1	16.975	+	AF285157 AF285158 AF285159 AB587539 J04088 BC140791 TSC_hg19_v1_chr17_-_38574134 BC013429 NM_001067	-188	-	TSC_hg19_v1_chr17_-_38520951 AK125254 NM_152219	-53366	-	NM_001024809	-76042	+	TSC_hg19_v1_chr17_+_38599701 NM_001552 AK290810 AK304572 BC016041 M62403 M38177 AB463781 BT019891 BT019892	25507	+	AF417488 AF370421 NM_032865 TSC_hg19_v1_chr17_-_38657876	83534	-	BC035343 L08176 AK312732 AK127810 L31581 NM_001838	147406	-	AF285157|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##AF285158|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##AF285159|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##J04088|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##BC140791|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##BC013429|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##NM_001067|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##AK125254|GJD3|125111|gap junction protein, delta 3, 31.9kDa##NM_152219|GJD3|125111|gap junction protein, delta 3, 31.9kDa##NM_001024809|RARA|5914|retinoic acid receptor, alpha##NM_001552|IGFBP4|3487|insulin-like growth factor binding protein 4##AK290810|IGFBP4|3487|insulin-like growth factor binding protein 4##AK304572|IGFBP4|3487|insulin-like growth factor binding protein 4##BC016041|IGFBP4|3487|insulin-like growth factor binding protein 4##M62403|IGFBP4|3487|insulin-like growth factor binding protein 4##M38177|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019891|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019892|IGFBP4|3487|insulin-like growth factor binding protein 4##AF417488|TNS4|84951|tensin 4##AF370421|TNS4|84951|tensin 4##NM_032865|TNS4|84951|tensin 4##BC035343|CCR7|1236|chemokine (C-C motif) receptor 7##L08176|CCR7|1236|chemokine (C-C motif) receptor 7##AK312732|CCR7|1236|chemokine (C-C motif) receptor 7##AK127810|CCR7|1236|chemokine (C-C motif) receptor 7##L31581|CCR7|1236|chemokine (C-C motif) receptor 7##NM_001838|CCR7|1236|chemokine (C-C motif) receptor 7	1.925708	denovo_WM_21:-4:0.499	denovo_WM_21:-71:0.442	denovo_WM_21:79:0.972
chr19	7894814	7894976	reg1000023.p2	16.961	+	NM_001144904 NM_001144905 NM_001144906 NM_001144907 NM_001144908 NM_001144909 NM_001144910 NM_001144911 NM_014257 AK292278 BC038851 AF290887 AK304499 AK314704 AB015629 AF245219 AK298084 AK023750 BC110614 AY343913 DQ893779 AY042234 AY042235 AY042236 AY042237 AY042238 AY042239 AY042240	-66802	+	AY042221 AY042222 AY042223 AY042224 AY042225 AY042226 AY042227 AY042228 AY042229 AY042230 AY042231 AY042232 AY042233 AB527563 BC110615 AF290886 AK293089 TSC_hg19_v1_chr19_-_7812421 M98457 AK304190 AK313585 NM_001144893 NM_001144894 NM_001144895 NM_001144896 NM_001144897 NM_001144899 NM_021155	-82466	-	AY203939 BC093691 BC093693 BC143309 AY423706 NM_001244856 NM_198492	-97879	-	TSC_hg19_v1_chr19_+_7895113 NM_145245 BC014111	281	+	NM_001159944 AB449874	16511	+	AL442075 TSC_hg19_v1_chr19_-_7934829	39922	-	NM_001144904|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144905|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144906|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144907|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144908|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144909|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144910|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144911|CLEC4M|10332|C-type lectin domain family 4, member M##NM_014257|CLEC4M|10332|C-type lectin domain family 4, member M##AK292278|CLEC4M|10332|C-type lectin domain family 4, member M##BC038851|CLEC4M|10332|C-type lectin domain family 4, member M##AF290887|CLEC4M|10332|C-type lectin domain family 4, member M##AK304499|CLEC4M|10332|C-type lectin domain family 4, member M##AK314704|CLEC4M|10332|C-type lectin domain family 4, member M##AB015629|CLEC4M|10332|C-type lectin domain family 4, member M##AF245219|CLEC4M|10332|C-type lectin domain family 4, member M##AK298084|CLEC4M|10332|C-type lectin domain family 4, member M##AK023750|CLEC4M|10332|C-type lectin domain family 4, member M##BC110614|CLEC4M|10332|C-type lectin domain family 4, member M##AY343913|CLEC4M|10332|C-type lectin domain family 4, member M##DQ893779|CLEC4M|10332|C-type lectin domain family 4, member M##AY042234|CLEC4M|10332|C-type lectin domain family 4, member M##AY042235|CLEC4M|10332|C-type lectin domain family 4, member M##AY042236|CLEC4M|10332|C-type lectin domain family 4, member M##AY042237|CLEC4M|10332|C-type lectin domain family 4, member M##AY042238|CLEC4M|10332|C-type lectin domain family 4, member M##AY042239|CLEC4M|10332|C-type lectin domain family 4, member M##AY042240|CLEC4M|10332|C-type lectin domain family 4, member M##AY042221|CD209|30835|CD209 molecule##AY042222|CD209|30835|CD209 molecule##AY042223|CD209|30835|CD209 molecule##AY042224|CD209|30835|CD209 molecule##AY042225|CD209|30835|CD209 molecule##AY042226|CD209|30835|CD209 molecule##AY042227|CD209|30835|CD209 molecule##AY042228|CD209|30835|CD209 molecule##AY042229|CD209|30835|CD209 molecule##AY042230|CD209|30835|CD209 molecule##AY042231|CD209|30835|CD209 molecule##AY042232|CD209|30835|CD209 molecule##AY042233|CD209|30835|CD209 molecule##BC110615|CD209|30835|CD209 molecule##AF290886|CD209|30835|CD209 molecule##AK293089|CD209|30835|CD209 molecule##M98457|CD209|30835|CD209 molecule##AK304190|CD209|30835|CD209 molecule##AK313585|CD209|30835|CD209 molecule##NM_001144893|CD209|30835|CD209 molecule##NM_001144894|CD209|30835|CD209 molecule##NM_001144895|CD209|30835|CD209 molecule##NM_001144896|CD209|30835|CD209 molecule##NM_001144897|CD209|30835|CD209 molecule##NM_001144899|CD209|30835|CD209 molecule##NM_021155|CD209|30835|CD209 molecule##AY203939|CLEC4G|339390|C-type lectin domain family 4, member G##BC093691|CLEC4G|339390|C-type lectin domain family 4, member G##BC093693|CLEC4G|339390|C-type lectin domain family 4, member G##BC143309|CLEC4G|339390|C-type lectin domain family 4, member G##AY423706|CLEC4G|339390|C-type lectin domain family 4, member G##NM_001244856|CLEC4G|339390|C-type lectin domain family 4, member G##NM_198492|CLEC4G|339390|C-type lectin domain family 4, member G##NM_145245|EVI5L|115704|ecotropic viral integration site 5-like##BC014111|EVI5L|115704|ecotropic viral integration site 5-like##NM_001159944|EVI5L|115704|ecotropic viral integration site 5-like##AB449874|EVI5L|115704|ecotropic viral integration site 5-like##AL442075|FLJ22184|80164|putative uncharacterized protein FLJ22184	0.52075	denovo_WM_21:-43:0.521
chr19	12662360	12662504	reg1000040.p1	16.890	+	BC136728 BC136729 TSC_hg19_v1_chr19_-_12662297 BC065023 AK095600 BC028367 AK092760 AX747711 BX647959 NM_144976	-159	-	TSC_hg19_v1_chr19_-_12595631 NM_152601	-66804	-	BC136746 BC136751 AK290911 TSC_hg19_v1_chr19_-_12595603 BC036481	-66856	-	AB385437 CU691590 EU446833 BC038586 AB033024 NM_020714 TSC_hg19_v1_chr19_-_12721628	59129	-	AK307775 NM_153358 AK298597 TSC_hg19_v1_chr19_+_12721749 AX721060 AK074877 AK297715 BC106937 BC106938	59332	+	TSC_hg19_v1_chr19_-_12777530 U68382 U68567 AB209921 DQ891878 DQ895066 AB527181 U60266 BC000736	115080	-	BC136728|ZNF564|163050|zinc finger protein 564##BC136729|ZNF564|163050|zinc finger protein 564##BC065023|ZNF564|163050|zinc finger protein 564##BC028367|ZNF564|163050|zinc finger protein 564##AK092760|ZNF564|163050|zinc finger protein 564##BX647959|ZNF564|163050|zinc finger protein 564##NM_144976|ZNF564|163050|zinc finger protein 564##NM_152601|ZNF709|163051|zinc finger protein 709##BC136746|ZNF709|163051|zinc finger protein 709##BC136751|ZNF709|163051|zinc finger protein 709##AK290911|ZNF709|163051|zinc finger protein 709##BC036481|ZNF709|163051|zinc finger protein 709##EU446833|ZNF490|57474|zinc finger protein 490##BC038586|ZNF490|57474|zinc finger protein 490##AB033024|ZNF490|57474|zinc finger protein 490##NM_020714|ZNF490|57474|zinc finger protein 490##AK307775|ZNF791|163049|zinc finger protein 791##NM_153358|ZNF791|163049|zinc finger protein 791##AK298597|ZNF791|163049|zinc finger protein 791##AK074877|ZNF791|163049|zinc finger protein 791##AK297715|ZNF791|163049|zinc finger protein 791##BC106937|ZNF791|163049|zinc finger protein 791##BC106938|ZNF791|163049|zinc finger protein 791##U68382|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##U68567|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##AB209921|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##DQ891878|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##DQ895066|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##U60266|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##BC000736|MAN2B1|4125|mannosidase, alpha, class 2B, member 1	0.89558	denovo_WM_21:-86:0.826
chr19	54641214	54641398	reg1000017.p2	16.871	+	TSC_hg19_v1_chr19_+_54619150 AK098547 AL050369 AB593024	-22127	+	TSC_hg19_v1_chr19_+_54619133 AK301709 AB593025	-22176	+	AK310647 AF052052 AK310627 NM_013342	-22267	-	TSC_hg19_v1_chr19_+_54641468 NM_014516	141	+	TSC_hg19_v1_chr19_+_54641477 BC016474 AK300434 AK160386	211	+	DQ892220 DQ895417 DQ895418 TSC_hg19_v1_chr19_-_54663482 BC014986 NM_024316	22152	-	AK098547|PRPF31|26121|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)##AL050369|PRPF31|26121|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)##AB593024|PRPF31|26121|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)##AK301709|PRPF31|26121|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)##AB593025|PRPF31|26121|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)##AK310647|TFPT|29844|TCF3 (E2A) fusion partner (in childhood Leukemia)##AF052052|TFPT|29844|TCF3 (E2A) fusion partner (in childhood Leukemia)##AK310627|TFPT|29844|TCF3 (E2A) fusion partner (in childhood Leukemia)##NM_013342|TFPT|29844|TCF3 (E2A) fusion partner (in childhood Leukemia)##NM_014516|CNOT3|4849|CCR4-NOT transcription complex, subunit 3##BC016474|CNOT3|4849|CCR4-NOT transcription complex, subunit 3##AK300434|CNOT3|4849|CCR4-NOT transcription complex, subunit 3##AK160386|CNOT3|4849|CCR4-NOT transcription complex, subunit 3##DQ892220|LENG1|79165|leukocyte receptor cluster (LRC) member 1##DQ895417|LENG1|79165|leukocyte receptor cluster (LRC) member 1##DQ895418|LENG1|79165|leukocyte receptor cluster (LRC) member 1##BC014986|LENG1|79165|leukocyte receptor cluster (LRC) member 1##NM_024316|LENG1|79165|leukocyte receptor cluster (LRC) member 1	0.818924	denovo_WM_21:47:0.755
chr17	79818616	79818771	reg1000022.p1	16.750	+	TSC_hg19_v1_chr17_-_79818514 NM_000918	-156	-	AK298005 TSC_hg19_v1_chr17_-_79818446	-248	-	TSC_hg19_v1_chr17_-_79818439 AK297081 AK095938 AK300561	-263	-	TSC_hg19_v1_chr17_-_79828694 NM_001185077	10047	-	TSC_hg19_v1_chr17_-_79829214 BC016185 BC024258 BC075827 X69550 BC027730 BC028333 BC013846 BC009759 AK312347 AK293147	10511	-	BC005851 BC005875 TSC_hg19_v1_chr17_-_79829249 BC106044 AK300816	10555	-	NM_000918|P4HB|5034|prolyl 4-hydroxylase, beta polypeptide##AK298005|P4HB|5034|prolyl 4-hydroxylase, beta polypeptide##AK297081|P4HB|5034|prolyl 4-hydroxylase, beta polypeptide##AK095938|P4HB|5034|prolyl 4-hydroxylase, beta polypeptide##AK300561|P4HB|5034|prolyl 4-hydroxylase, beta polypeptide##NM_001185077|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##BC016185|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##BC024258|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##BC075827|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##X69550|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##BC027730|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##BC028333|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##BC013846|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##BC009759|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##AK312347|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##AK293147|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##BC005851|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##BC005875|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##BC106044|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##AK300816|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha	1.944603	denovo_WM_21:-17:0.988	denovo_WM_21:98:0.893
chr17	4870610	4870782	reg1000026.p1	16.658	+	NM_001193503 NM_001976 NM_053013 TSC_hg19_v1_chr17_+_4854406 AK300662 AK300673 AK300709 AK309864 BC017249	-16292	+	TSC_hg19_v1_chr17_-_4851828 BC057828	-18852	-	TSC_hg19_v1_chr17_-_4851824 BC006768 BC013439 BC002475 J03191 BC015164 AK312168 D28377 NM_005022	-18886	-	BC007819 BC011934 TSC_hg19_v1_chr17_-_4871113 AF047437 AK312174 NM_004890	415	-	AL831849 NM_001171167 NM_001171168 TSC_hg19_v1_chr17_-_4890732	20004	-	AB020716 BC167148 BC167149 BC167151 BC167160 EU832136 EU832229 TSC_hg19_v1_chr17_-_4890947 AK302528 AL833974 BC142695 NM_001171166 NM_015099	20256	-	NM_001193503|ENO3|2027|enolase 3 (beta, muscle)##NM_001976|ENO3|2027|enolase 3 (beta, muscle)##NM_053013|ENO3|2027|enolase 3 (beta, muscle)##AK300662|ENO3|2027|enolase 3 (beta, muscle)##AK300673|ENO3|2027|enolase 3 (beta, muscle)##AK300709|ENO3|2027|enolase 3 (beta, muscle)##AK309864|ENO3|2027|enolase 3 (beta, muscle)##BC017249|ENO3|2027|enolase 3 (beta, muscle)##BC057828|PFN1|5216|profilin 1##BC006768|PFN1|5216|profilin 1##BC013439|PFN1|5216|profilin 1##BC002475|PFN1|5216|profilin 1##J03191|PFN1|5216|profilin 1##BC015164|PFN1|5216|profilin 1##AK312168|PFN1|5216|profilin 1##D28377|PFN1|5216|profilin 1##NM_005022|PFN1|5216|profilin 1##BC007819|SPAG7|9552|sperm associated antigen 7##BC011934|SPAG7|9552|sperm associated antigen 7##AF047437|SPAG7|9552|sperm associated antigen 7##AK312174|SPAG7|9552|sperm associated antigen 7##NM_004890|SPAG7|9552|sperm associated antigen 7##AL831849|CAMTA2|23125|calmodulin binding transcription activator 2##NM_001171167|CAMTA2|23125|calmodulin binding transcription activator 2##NM_001171168|CAMTA2|23125|calmodulin binding transcription activator 2##AB020716|CAMTA2|23125|calmodulin binding transcription activator 2##BC167148|CAMTA2|23125|calmodulin binding transcription activator 2##BC167149|CAMTA2|23125|calmodulin binding transcription activator 2##BC167151|CAMTA2|23125|calmodulin binding transcription activator 2##BC167160|CAMTA2|23125|calmodulin binding transcription activator 2##EU832136|CAMTA2|23125|calmodulin binding transcription activator 2##EU832229|CAMTA2|23125|calmodulin binding transcription activator 2##AK302528|CAMTA2|23125|calmodulin binding transcription activator 2##AL833974|CAMTA2|23125|calmodulin binding transcription activator 2##BC142695|CAMTA2|23125|calmodulin binding transcription activator 2##NM_001171166|CAMTA2|23125|calmodulin binding transcription activator 2##NM_015099|CAMTA2|23125|calmodulin binding transcription activator 2	1.14467	denovo_WM_21:-31:0.746	denovo_WM_21:-71:0.370
chr19	13905997	13906148	reg1000041.p1	16.499	+	TSC_hg19_v1_chr19_+_13885286 BC015465 AF086483 AF078852 DQ891569 DQ894761 AK311855	-20788	+	TSC_hg19_v1_chr19_+_13885269 NM_014047	-20807	+	TSC_hg19_v1_chr19_+_13875374 AY358176 BC001703 EU832338 EU832423 AM392616 AM393224 AB528180	-30681	+	TSC_hg19_v1_chr19_+_13906256 AK024452 NM_023072	173	+	AL832183 BX640708 TSC_hg19_v1_chr19_-_13947102	41030	-	BC101209 BC101210 NM_001098622	81990	+	BC015465|C19orf53|28974|chromosome 19 open reading frame 53##AF086483|C19orf53|28974|chromosome 19 open reading frame 53##AF078852|C19orf53|28974|chromosome 19 open reading frame 53##DQ891569|C19orf53|28974|chromosome 19 open reading frame 53##DQ894761|C19orf53|28974|chromosome 19 open reading frame 53##AK311855|C19orf53|28974|chromosome 19 open reading frame 53##NM_014047|C19orf53|28974|chromosome 19 open reading frame 53##AY358176|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##BC001703|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##EU832338|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##EU832423|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##AM392616|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##AM393224|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##AK024452|ZSWIM4|65249|zinc finger, SWIM-type containing 4##NM_023072|ZSWIM4|65249|zinc finger, SWIM-type containing 4##AL832183|LOC284454|284454|uncharacterized LOC284454##BX640708|LOC284454|284454|uncharacterized LOC284454##BC101209|NANOS3|342977|nanos homolog 3 (Drosophila)##BC101210|NANOS3|342977|nanos homolog 3 (Drosophila)##NM_001098622|NANOS3|342977|nanos homolog 3 (Drosophila)	1.327482	denovo_WM_21:-42:0.988	denovo_WM_21:87:0.340
chr19	36193319	36193457	reg1000043.p1	16.496	+	BC107097 BC107098 NM_007000 AF085807	-35672	+	TSC_hg19_v1_chr19_+_36139253 D28426 BC002478 X54473 X13923	-54136	+	TSC_hg19_v1_chr19_+_36139222 AK312140	-54164	+	AF130255 NM_014383	10441	+	TSC_hg19_v1_chr19_+_36208923 AJ007041 NM_014727	15542	+	TSC_hg19_v1_chr19_+_36209125 AF186605	15798	+	BC107097|UPK1A|11045|uroplakin 1A##BC107098|UPK1A|11045|uroplakin 1A##NM_007000|UPK1A|11045|uroplakin 1A##AF085807|UPK1A|11045|uroplakin 1A##D28426|COX6B1|1340|cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous)##BC002478|COX6B1|1340|cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous)##X54473|COX6B1|1340|cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous)##X13923|COX6B1|1340|cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous)##AK312140|COX6B1|1340|cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous)##AF130255|ZBTB32|27033|zinc finger and BTB domain containing 32##NM_014383|ZBTB32|27033|zinc finger and BTB domain containing 32##AJ007041|MLL4|9757|myeloid/lymphoid or mixed-lineage leukemia 4##NM_014727|MLL4|9757|myeloid/lymphoid or mixed-lineage leukemia 4##AF186605|MLL4|9757|myeloid/lymphoid or mixed-lineage leukemia 4	2.192891	denovo_WM_21:-22:0.986	denovo_WM_21:33:0.242	denovo_WM_21:94:0.966
chr19	47551913	47552033	reg1000027.p1	16.443	+	AK000519 NM_017854 TSC_hg19_v1_chr19_-_47551883 BC002907	-77	-	AB054002 NM_002517 U77968	-27762	+	TSC_hg19_v1_chr19_+_47523068 BC039016	-28897	+	AK125279 TSC_hg19_v1_chr19_-_47615487	63513	-	TSC_hg19_v1_chr19_-_47615825 AB384098	63850	-	AB028987 NM_015168 TSC_hg19_v1_chr19_-_47617034	65049	-	AK000519|TMEM160|54958|transmembrane protein 160##NM_017854|TMEM160|54958|transmembrane protein 160##BC002907|TMEM160|54958|transmembrane protein 160##AB054002|NPAS1|4861|neuronal PAS domain protein 1##NM_002517|NPAS1|4861|neuronal PAS domain protein 1##U77968|NPAS1|4861|neuronal PAS domain protein 1##BC039016|NPAS1|4861|neuronal PAS domain protein 1##AK125279|ZC3H4|23211|zinc finger CCCH-type containing 4##AB028987|ZC3H4|23211|zinc finger CCCH-type containing 4##NM_015168|ZC3H4|23211|zinc finger CCCH-type containing 4	0.796113	denovo_WM_21:-10:0.573	denovo_WM_21:31:0.223
chr9	140135525	140135676	reg1000020.p2	16.392	+	AK095999 NM_080877	-10216	+	BC029942 NM_001177316 NM_001177317	-10392	+	NM_001190228	-13583	+	TSC_hg19_v1_chr9_+_140135712 NM_006088	108	+	AK000560 AK021414 AK026594 AK026609 AK298087 BC029529 TSC_hg19_v1_chr9_+_140135738 AK026167 BX648521	138	+	TSC_hg19_v1_chr9_+_140135744 AK098686 BC019829 BC004188 BC012835 AF064849 BC002783 BC039175 BC002885 BC019359 BC007889 BC024038 BC071889 BC001911 AB590760 CU691670 AY167990	177	+	AK095999|SLC34A3|142680|solute carrier family 34 (sodium phosphate), member 3##NM_080877|SLC34A3|142680|solute carrier family 34 (sodium phosphate), member 3##BC029942|SLC34A3|142680|solute carrier family 34 (sodium phosphate), member 3##NM_001177316|SLC34A3|142680|solute carrier family 34 (sodium phosphate), member 3##NM_001177317|SLC34A3|142680|solute carrier family 34 (sodium phosphate), member 3##NM_001190228|RNF224|643596|ring finger protein 224##NM_006088|TUBB4B|10383|tubulin, beta 4B class IVb##AK000560|TUBB4B|10383|tubulin, beta 4B class IVb##AK021414|TUBB4B|10383|tubulin, beta 4B class IVb##AK026594|TUBB4B|10383|tubulin, beta 4B class IVb##AK026609|TUBB4B|10383|tubulin, beta 4B class IVb##AK298087|TUBB4B|10383|tubulin, beta 4B class IVb##BC029529|TUBB4B|10383|tubulin, beta 4B class IVb##AK026167|TUBB4B|10383|tubulin, beta 4B class IVb##BX648521|TUBB4B|10383|tubulin, beta 4B class IVb##AK098686|TUBB4B|10383|tubulin, beta 4B class IVb##BC019829|TUBB4B|10383|tubulin, beta 4B class IVb##BC004188|TUBB4B|10383|tubulin, beta 4B class IVb##BC012835|TUBB4B|10383|tubulin, beta 4B class IVb##BC002783|TUBB4B|10383|tubulin, beta 4B class IVb##BC039175|TUBB4B|10383|tubulin, beta 4B class IVb##BC002885|TUBB4B|10383|tubulin, beta 4B class IVb##BC019359|TUBB4B|10383|tubulin, beta 4B class IVb##BC007889|TUBB4B|10383|tubulin, beta 4B class IVb##BC024038|TUBB4B|10383|tubulin, beta 4B class IVb##BC071889|TUBB4B|10383|tubulin, beta 4B class IVb##BC001911|TUBB4B|10383|tubulin, beta 4B class IVb##AY167990|TUBB4B|10383|tubulin, beta 4B class IVb	0.35838	denovo_WM_21:-23:0.306
chr8	145159238	145159356	reg1000042.p1	16.212	+	TSC_hg19_v1_chr8_-_145159154 AK075518 AB052764 AB052765 BC025244 NM_030974	-146	-	AL136816 FJ655995 TSC_hg19_v1_chr8_-_145159076	-321	-	TSC_hg19_v1_chr8_-_145158677 BC034028	-620	-	NM_032272 TSC_hg19_v1_chr8_+_145159381	47	+	TSC_hg19_v1_chr8_+_145159398 BC031273 BC018714 BC014082 AL136937	116	+	BC003035 BC009915 NM_016458 AK098226 BC015471	33398	+	AK075518|SHARPIN|81858|SHANK-associated RH domain interactor##AB052764|SHARPIN|81858|SHANK-associated RH domain interactor##AB052765|SHARPIN|81858|SHANK-associated RH domain interactor##BC025244|SHARPIN|81858|SHANK-associated RH domain interactor##NM_030974|SHARPIN|81858|SHANK-associated RH domain interactor##AL136816|SHARPIN|81858|SHANK-associated RH domain interactor##FJ655995|SHARPIN|81858|SHANK-associated RH domain interactor##BC034028|SHARPIN|81858|SHANK-associated RH domain interactor##NM_032272|MAF1|84232|MAF1 homolog (S. cerevisiae)##BC031273|MAF1|84232|MAF1 homolog (S. cerevisiae)##BC018714|MAF1|84232|MAF1 homolog (S. cerevisiae)##BC014082|MAF1|84232|MAF1 homolog (S. cerevisiae)##AL136937|MAF1|84232|MAF1 homolog (S. cerevisiae)##BC003035|FAM203A|51236|family with sequence similarity 203, member A##BC009915|FAM203A|51236|family with sequence similarity 203, member A##NM_016458|FAM203A|51236|family with sequence similarity 203, member A##AK098226|FAM203A|51236|family with sequence similarity 203, member A##BC015471|FAM203A|51236|family with sequence similarity 203, member A	0.697571	denovo_WM_21:-77:0.558
chr12	57039840	57039982	reg1000045.p1	16.146	+	TSC_hg19_v1_chr12_-_57039785 NM_001686	-85	-	TSC_hg19_v1_chr12_-_57039769 CU677643 DQ891585 DQ894779 BC010111 AB489161 BC016512 AK291085	-156	-	TSC_hg19_v1_chr12_-_57030136 AK303327 CR749379 NM_013449	-9785	-	AK098214 TSC_hg19_v1_chr12_-_57081913 BC003005	41939	-	TSC_hg19_v1_chr12_-_57081947 AK291945 AK295208	42029	-	TSC_hg19_v1_chr12_-_57082040 AK298160 L24804 Z69891	42090	-	NM_001686|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##DQ891585|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##DQ894779|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##BC016512|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##AK291085|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##AK303327|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##CR749379|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##NM_013449|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##AK098214|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##BC003005|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK291945|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK295208|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK298160|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##L24804|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##Z69891|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)	0.706423	denovo_WM_21:40:0.626
chr19	42772981	42773165	reg1000005.p1	16.104	+	AK300627 TSC_hg19_v1_chr19_-_42759281 AK314278 NM_006494	-13768	-	AB463618 CU692500 DQ893568 DQ896817 TSC_hg19_v1_chr19_-_42759278 BC022231 U15655	-13859	-	TSC_hg19_v1_chr19_-_42746755 BC027984	-26315	-	TSC_hg19_v1_chr19_+_42788616 AF363689 DQ388764 NM_015125 AB527445	15656	+	BC063021 AK291528 NM_199285	33193	+	AB528706 CR407626 TSC_hg19_v1_chr19_-_42806760 D63391 BC007863 BC003016 NM_002573	33587	-	AK300627|ERF|2077|Ets2 repressor factor##AK314278|ERF|2077|Ets2 repressor factor##NM_006494|ERF|2077|Ets2 repressor factor##DQ893568|ERF|2077|Ets2 repressor factor##DQ896817|ERF|2077|Ets2 repressor factor##BC022231|ERF|2077|Ets2 repressor factor##U15655|ERF|2077|Ets2 repressor factor##BC027984|GSK3A|2931|glycogen synthase kinase 3 alpha##AF363689|CIC|23152|capicua homolog (Drosophila)##NM_015125|CIC|23152|capicua homolog (Drosophila)##BC063021|PRR19|284338|proline rich 19##AK291528|PRR19|284338|proline rich 19##NM_199285|PRR19|284338|proline rich 19##CR407626|PAFAH1B3|5050|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)##D63391|PAFAH1B3|5050|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)##BC007863|PAFAH1B3|5050|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)##BC003016|PAFAH1B3|5050|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)##NM_002573|PAFAH1B3|5050|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)	0.839415	denovo_WM_21:-42:0.540	denovo_WM_21:-82:0.266
chr19	10828452	10828636	reg1000006.p2	16.037	+	NM_031209 TSC_hg19_v1_chr19_+_10812129 AK314308 AK057877 AK225173 AK294166 AF302783 AF370379 BC015350 AF302784	-16386	+	TSC_hg19_v1_chr19_+_10791025 AJ271747	-37496	+	AB528039 AF167569 AF167570 CU687952 HQ322263 HQ322264 HQ322265 TSC_hg19_v1_chr19_+_10781789	-46818	+	TSC_hg19_v1_chr19_+_10828738 NM_001005360 NM_001005361 NM_001005362 NM_001190716 NM_004945	188	+	TSC_hg19_v1_chr19_+_10828754 AK312260	210	+	TSC_hg19_v1_chr19_+_10828765 BC054501	223	+	NM_031209|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AK314308|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AK057877|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AK225173|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AK294166|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AF302783|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AF370379|QTRT1|81890|queuine tRNA-ribosyltransferase 1##BC015350|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AF302784|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AF167569|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AF167570|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##HQ322263|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##HQ322264|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##HQ322265|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_001005360|DNM2|1785|dynamin 2##NM_001005361|DNM2|1785|dynamin 2##NM_001005362|DNM2|1785|dynamin 2##NM_001190716|DNM2|1785|dynamin 2##NM_004945|DNM2|1785|dynamin 2##AK312260|DNM2|1785|dynamin 2##BC054501|DNM2|1785|dynamin 2	1.363115	denovo_WM_21:0:0.325	denovo_WM_21:100:0.921
chr19	4342840	4342997	reg1000049.p1	15.999	+	TSC_hg19_v1_chr19_-_4342718 AK125774	-168	-	AB527779 TSC_hg19_v1_chr19_-_4338790 BC000795 AJ245719 AK000241 NM_001013841 NM_017720	-4120	-	NM_024333 TSC_hg19_v1_chr19_+_4304594 AK315661 AK295523 AK303606 AY032617 BC003124 AK021750 AF316829 DQ891833 DQ895020	-38253	+	NM_001159846 NM_032868 AK027887 AK308468 TSC_hg19_v1_chr19_+_4343562 BC032652	641	+	TSC_hg19_v1_chr19_-_4400419 AY364240 CR542087 AB527297 DQ891258 DQ894444 U65999 X99656 AK097616 NM_001199944	57475	-	BC001270 TSC_hg19_v1_chr19_-_4400513 AK315450 BC098565 AK299166 NM_001199943 NM_003025	57635	-	AK125774|STAP2|55620|signal transducing adaptor family member 2##BC000795|STAP2|55620|signal transducing adaptor family member 2##AJ245719|STAP2|55620|signal transducing adaptor family member 2##AK000241|STAP2|55620|signal transducing adaptor family member 2##NM_001013841|STAP2|55620|signal transducing adaptor family member 2##NM_017720|STAP2|55620|signal transducing adaptor family member 2##NM_024333|FSD1|79187|fibronectin type III and SPRY domain containing 1##AK315661|FSD1|79187|fibronectin type III and SPRY domain containing 1##AK295523|FSD1|79187|fibronectin type III and SPRY domain containing 1##AK303606|FSD1|79187|fibronectin type III and SPRY domain containing 1##AY032617|FSD1|79187|fibronectin type III and SPRY domain containing 1##BC003124|FSD1|79187|fibronectin type III and SPRY domain containing 1##AK021750|FSD1|79187|fibronectin type III and SPRY domain containing 1##AF316829|FSD1|79187|fibronectin type III and SPRY domain containing 1##DQ891833|FSD1|79187|fibronectin type III and SPRY domain containing 1##DQ895020|FSD1|79187|fibronectin type III and SPRY domain containing 1##NM_001159846|MPND|84954|MPN domain containing##NM_032868|MPND|84954|MPN domain containing##AK027887|MPND|84954|MPN domain containing##AK308468|MPND|84954|MPN domain containing##BC032652|MPND|84954|MPN domain containing##AY364240|SH3GL1|6455|SH3-domain GRB2-like 1##CR542087|SH3GL1|6455|SH3-domain GRB2-like 1##DQ891258|SH3GL1|6455|SH3-domain GRB2-like 1##DQ894444|SH3GL1|6455|SH3-domain GRB2-like 1##U65999|SH3GL1|6455|SH3-domain GRB2-like 1##X99656|SH3GL1|6455|SH3-domain GRB2-like 1##AK097616|SH3GL1|6455|SH3-domain GRB2-like 1##NM_001199944|SH3GL1|6455|SH3-domain GRB2-like 1##BC001270|SH3GL1|6455|SH3-domain GRB2-like 1##AK315450|SH3GL1|6455|SH3-domain GRB2-like 1##BC098565|SH3GL1|6455|SH3-domain GRB2-like 1##AK299166|SH3GL1|6455|SH3-domain GRB2-like 1##NM_001199943|SH3GL1|6455|SH3-domain GRB2-like 1##NM_003025|SH3GL1|6455|SH3-domain GRB2-like 1	2.270535	denovo_WM_21:-27:0.620	denovo_WM_21:49:0.227	denovo_WM_21:-51:0.798	denovo_WM_21:83:0.564
chr14	96001104	96001269	reg1000044.p1	15.964	+	TSC_hg19_v1_chr14_-_96000962 BC036576 AK097876	-171	-	AK131436 BC146604 BX248076 NM_152592	-59082	-	AL117526 TSC_hg19_v1_chr14_-_95786246 AK025226 BC068482 AB047979 AK314315 NM_024734	-215003	-	TSC_hg19_v1_chr14_+_96001352 NM_016417	140	+	TSC_hg19_v1_chr14_+_96001362 BX248075 BC023528 BC047680	182	+	AB223038 TSC_hg19_v1_chr14_+_96001383	197	+	BC036576|SNHG10|283596|small nucleolar RNA host gene 10 (non-protein coding)##AK097876|SNHG10|283596|small nucleolar RNA host gene 10 (non-protein coding)##AK131436|C14orf49|161176|chromosome 14 open reading frame 49##BC146604|C14orf49|161176|chromosome 14 open reading frame 49##BX248076|C14orf49|161176|chromosome 14 open reading frame 49##NM_152592|C14orf49|161176|chromosome 14 open reading frame 49##AL117526|CLMN|79789|calmin (calponin-like, transmembrane)##AK025226|CLMN|79789|calmin (calponin-like, transmembrane)##BC068482|CLMN|79789|calmin (calponin-like, transmembrane)##AB047979|CLMN|79789|calmin (calponin-like, transmembrane)##AK314315|CLMN|79789|calmin (calponin-like, transmembrane)##NM_024734|CLMN|79789|calmin (calponin-like, transmembrane)##NM_016417|GLRX5|51218|glutaredoxin 5##BX248075|GLRX5|51218|glutaredoxin 5##BC023528|GLRX5|51218|glutaredoxin 5##BC047680|GLRX5|51218|glutaredoxin 5##AB223038|GLRX5|51218|glutaredoxin 5	0.395828	denovo_WM_21:109:0.257
chr19	15529839	15529998	reg1000050.p1	15.861	+	TSC_hg19_v1_chr19_-_15529834 NM_014371 AK295956	-84	-	DQ891853 DQ895043 TSC_hg19_v1_chr19_-_15529792 AB015332 AB025905 AJ243467 BC000713 AK001594 AK094736 AK225046 AK225291 AK310990	-143	-	TSC_hg19_v1_chr19_-_15490599 AK308251 AK303640 BC037270 Y11997 NM_005858	-39312	-	AK122890 TSC_hg19_v1_chr19_-_15543534	13627	-	AK131404 NM_021241 TSC_hg19_v1_chr19_-_15560872	30900	-	AK024488 TSC_hg19_v1_chr19_-_15575356 AK122587 NM_022904	45449	-	NM_014371|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AK295956|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##DQ891853|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##DQ895043|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AB015332|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AB025905|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AJ243467|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##BC000713|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AK001594|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AK094736|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AK225046|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AK225291|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AK310990|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AK308251|AKAP8|10270|A kinase (PRKA) anchor protein 8##AK303640|AKAP8|10270|A kinase (PRKA) anchor protein 8##BC037270|AKAP8|10270|A kinase (PRKA) anchor protein 8##Y11997|AKAP8|10270|A kinase (PRKA) anchor protein 8##NM_005858|AKAP8|10270|A kinase (PRKA) anchor protein 8##AK122890|WIZ|58525|widely interspaced zinc finger motifs##AK131404|WIZ|58525|widely interspaced zinc finger motifs##NM_021241|WIZ|58525|widely interspaced zinc finger motifs##AK024488|RASAL3|64926|RAS protein activator like 3##AK122587|RASAL3|64926|RAS protein activator like 3##NM_022904|RASAL3|64926|RAS protein activator like 3	0.323427	denovo_WM_21:87:0.312
chr1	206138208	206138393	reg1000025.p2	15.859	+	TSC_hg19_v1_chr1_-_206137445 AK124556	-852	-	BC151208 BC136538 BC144233 AF331525 NM_052934 NM_134325	-225734	-	BC039170 BC063477 AK057131 AK290786 TSC_hg19_v1_chr1_-_205819261 NM_152491	-319041	-	BC035696 NM_001123168 BC137545 BC137546	616	+	NM_000707 AF030512 AF101726 L37112 AB528977 EU432111	86061	+	AK122631 NM_001007544	150346	-	AK124556|LOC100132966|100132966|uncharacterized LOC100132966##BC151208|SLC26A9|115019|solute carrier family 26, member 9##BC136538|SLC26A9|115019|solute carrier family 26, member 9##BC144233|SLC26A9|115019|solute carrier family 26, member 9##AF331525|SLC26A9|115019|solute carrier family 26, member 9##NM_052934|SLC26A9|115019|solute carrier family 26, member 9##NM_134325|SLC26A9|115019|solute carrier family 26, member 9##BC039170|PM20D1|148811|peptidase M20 domain containing 1##BC063477|PM20D1|148811|peptidase M20 domain containing 1##AK057131|PM20D1|148811|peptidase M20 domain containing 1##AK290786|PM20D1|148811|peptidase M20 domain containing 1##NM_152491|PM20D1|148811|peptidase M20 domain containing 1##BC035696|FAM72A|729533|family with sequence similarity 72, member A##NM_001123168|FAM72A|729533|family with sequence similarity 72, member A##BC137545|FAM72A|729533|family with sequence similarity 72, member A##BC137546|FAM72B|653820|family with sequence similarity 72, member B##NM_000707|AVPR1B|553|arginine vasopressin receptor 1B##AF030512|AVPR1B|553|arginine vasopressin receptor 1B##AF101726|AVPR1B|553|arginine vasopressin receptor 1B##L37112|AVPR1B|553|arginine vasopressin receptor 1B##EU432111|AVPR1B|553|arginine vasopressin receptor 1B##AK122631|C1orf186|440712|chromosome 1 open reading frame 186##NM_001007544|C1orf186|440712|chromosome 1 open reading frame 186	1.352633	denovo_WM_21:-16:0.582	denovo_WM_21:-47:0.770
chr1	120838743	120838928	reg1000034.p2	15.847	+	TSC_hg19_v1_chr1_-_120612318 NM_001200001 NM_024408	-226520	-	TSC_hg19_v1_chr1_-_120612272 BC071562	-226569	-	TSC_hg19_v1_chr1_-_120612211 AK307843	-226629	-	NM_001100910	169	+	L03419 L03420 TSC_hg19_v1_chr1_-_120935918 BC110416 AK308886	97074	-	AK291502 AK307244 AK311502 NM_001004340 NM_001017986 NM_001244910 TSC_hg19_v1_chr1_-_120935945	97117	-	NM_001200001|NOTCH2|4853|notch 2##NM_024408|NOTCH2|4853|notch 2##BC071562|NOTCH2|4853|notch 2##AK307843|NOTCH2|4853|notch 2##NM_001100910|FAM72B|653820|family with sequence similarity 72, member B##L03419|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##L03420|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##BC110416|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##AK308886|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##AK291502|FCGR1A|2209|Fc fragment of IgG, high affinity Ia, receptor (CD64)##AK307244|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##AK311502|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001004340|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001017986|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001244910|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)	0.770358	denovo_WM_21:-54:0.770
chr19	6424941	6425116	reg1000010.p1	15.840	+	TSC_hg19_v1_chr19_-_6424823 AK300957 NM_003685	-206	-	U94832 TSC_hg19_v1_chr19_-_6424804	-224	-	TSC_hg19_v1_chr19_-_6424790 BC085004	-240	-	AK097761 BC031671 NM_173637	8752	-	AK027562 TSC_hg19_v1_chr19_-_6442095	17022	-	TSC_hg19_v1_chr19_-_6459616 AK294514 CU674816	34593	-	AK300957|KHSRP|8570|KH-type splicing regulatory protein##NM_003685|KHSRP|8570|KH-type splicing regulatory protein##U94832|KHSRP|8570|KH-type splicing regulatory protein##BC085004|KHSRP|8570|KH-type splicing regulatory protein##AK097761|SLC25A41|284427|solute carrier family 25, member 41##BC031671|SLC25A41|284427|solute carrier family 25, member 41##NM_173637|SLC25A41|284427|solute carrier family 25, member 41##AK027562|SLC25A23|79085|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23##AK294514|SLC25A23|79085|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	0.982928	denovo_WM_21:-63:0.971
chr19	42773250	42773375	reg1000005.p2	15.825	+	AK300627 TSC_hg19_v1_chr19_-_42759281 AK314278 NM_006494	-14007	-	AB463618 CU692500 DQ893568 DQ896817 TSC_hg19_v1_chr19_-_42759278 BC022231 U15655	-14098	-	TSC_hg19_v1_chr19_-_42746755 BC027984	-26554	-	TSC_hg19_v1_chr19_+_42788616 AF363689 DQ388764 NM_015125 AB527445	15417	+	BC063021 AK291528 NM_199285	32954	+	AB528706 CR407626 TSC_hg19_v1_chr19_-_42806760 D63391 BC007863 BC003016 NM_002573	33348	-	AK300627|ERF|2077|Ets2 repressor factor##AK314278|ERF|2077|Ets2 repressor factor##NM_006494|ERF|2077|Ets2 repressor factor##DQ893568|ERF|2077|Ets2 repressor factor##DQ896817|ERF|2077|Ets2 repressor factor##BC022231|ERF|2077|Ets2 repressor factor##U15655|ERF|2077|Ets2 repressor factor##BC027984|GSK3A|2931|glycogen synthase kinase 3 alpha##AF363689|CIC|23152|capicua homolog (Drosophila)##NM_015125|CIC|23152|capicua homolog (Drosophila)##BC063021|PRR19|284338|proline rich 19##AK291528|PRR19|284338|proline rich 19##NM_199285|PRR19|284338|proline rich 19##CR407626|PAFAH1B3|5050|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)##D63391|PAFAH1B3|5050|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)##BC007863|PAFAH1B3|5050|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)##BC003016|PAFAH1B3|5050|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)##NM_002573|PAFAH1B3|5050|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)	1.031173	denovo_WM_21:57:0.966
chr19	6425242	6425424	reg1000010.p2	15.713	+	TSC_hg19_v1_chr19_-_6424823 AK300957 NM_003685	-511	-	U94832 TSC_hg19_v1_chr19_-_6424804	-529	-	TSC_hg19_v1_chr19_-_6424790 BC085004	-545	-	AK097761 BC031671 NM_173637	8447	-	AK027562 TSC_hg19_v1_chr19_-_6442095	16717	-	TSC_hg19_v1_chr19_-_6459616 AK294514 CU674816	34288	-	AK300957|KHSRP|8570|KH-type splicing regulatory protein##NM_003685|KHSRP|8570|KH-type splicing regulatory protein##U94832|KHSRP|8570|KH-type splicing regulatory protein##BC085004|KHSRP|8570|KH-type splicing regulatory protein##AK097761|SLC25A41|284427|solute carrier family 25, member 41##BC031671|SLC25A41|284427|solute carrier family 25, member 41##NM_173637|SLC25A41|284427|solute carrier family 25, member 41##AK027562|SLC25A23|79085|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23##AK294514|SLC25A23|79085|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	0.578002	denovo_WM_21:-94:0.397
chr17	79212906	79213057	reg1000030.p1	15.663	+	TSC_hg19_v1_chr17_-_79212892 NM_144679	-92	-	TSC_hg19_v1_chr17_-_79212861 AK128728 BC064483 BC042155 AK056090	-158	-	TSC_hg19_v1_chr17_-_79196766 BC136578 BC136580 BC144263 BC012130 NM_001009811 NM_014984 AB029041	-16215	-	BC141912 BC127837 NM_001086521 TSC_hg19_v1_chr17_+_79213151 BC079831	153	+	TSC_hg19_v1_chr17_-_79269071 BC014642	56085	-	TSC_hg19_v1_chr17_-_79269100 NM_001037984 NM_138570	56112	-	NM_144679|C17orf56|146705|chromosome 17 open reading frame 56##AK128728|C17orf56|146705|chromosome 17 open reading frame 56##BC064483|C17orf56|146705|chromosome 17 open reading frame 56##BC042155|C17orf56|146705|chromosome 17 open reading frame 56##AK056090|C17orf56|146705|chromosome 17 open reading frame 56##BC136578|AZI1|22994|5-azacytidine induced 1##BC136580|AZI1|22994|5-azacytidine induced 1##BC144263|AZI1|22994|5-azacytidine induced 1##BC012130|AZI1|22994|5-azacytidine induced 1##NM_001009811|AZI1|22994|5-azacytidine induced 1##NM_014984|AZI1|22994|5-azacytidine induced 1##AB029041|AZI1|22994|5-azacytidine induced 1##BC127837|C17orf89|284184|chromosome 17 open reading frame 89##NM_001086521|C17orf89|284184|chromosome 17 open reading frame 89##BC079831|C17orf89|284184|chromosome 17 open reading frame 89##BC014642|SLC38A10|124565|solute carrier family 38, member 10##NM_001037984|SLC38A10|124565|solute carrier family 38, member 10##NM_138570|SLC38A10|124565|solute carrier family 38, member 10	0.564914	denovo_WM_21:-5:0.498
chr1	143913327	143913512	reg1000014.p2	15.612	+	AK307197 TSC_hg19_v1_chr1_-_143913122 AB096683 NM_207418	-289	-	HQ258079 BC130376 BC130378 NM_001123068	-145555	-	BC071624 BC132962 AK097058 AK310056 TSC_hg19_v1_chr1_-_143744413 AK310186 AK309393	-169014	-	BC130376 BC130378 AB084917 NM_001135789 NM_001143883 NM_178230	450805	-	BC061517 BC073170 BC009950 BC094809 TSC_hg19_v1_chr1_-_144520932	607512	-	TSC_hg19_v1_chr1_-_144520998 BC063535 BC021732	607587	-	AK307197|FAM72D|728833|family with sequence similarity 72, member D##AB096683|FAM72D|728833|family with sequence similarity 72, member D##NM_207418|FAM72D|728833|family with sequence similarity 72, member D##HQ258079|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC130376|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC130378|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##NM_001123068|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC071624|FLJ39739|388685|uncharacterized FLJ39739##BC132962|LOC100286793|100286793|uncharacterized LOC100286793##AK097058|FLJ39739|388685|uncharacterized FLJ39739##AK310056|FLJ39739|388685|uncharacterized FLJ39739##AK310186|FLJ39739|388685|uncharacterized FLJ39739##AK309393|FLJ39739|388685|uncharacterized FLJ39739##BC130376|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC130378|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##AB084917|PPIAL4A|164022|peptidylprolyl isomerase A (cyclophilin A)-like 4A##NM_001135789|PPIAL4C|653598|peptidylprolyl isomerase A (cyclophilin A)-like 4C##NM_001143883|PPIAL4B|653505|peptidylprolyl isomerase A (cyclophilin A)-like 4B##NM_178230|PPIAL4A|164022|peptidylprolyl isomerase A (cyclophilin A)-like 4A##BC061517|LOC728855|728855|uncharacterized LOC728855##BC073170|LOC728855|728855|uncharacterized LOC728855##BC009950|LOC728855|728855|uncharacterized LOC728855##BC094809|LOC728855|728855|uncharacterized LOC728855##BC063535|LOC728855|728855|uncharacterized LOC728855##BC021732|LOC728855|728855|uncharacterized LOC728855	1.292894	denovo_WM_21:48:0.468	denovo_WM_21:-71:0.770
chr7	106809257	106809398	reg1000048.p2	15.602	+	TSC_hg19_v1_chr7_+_106685154 BC075800 M31158 NM_002736 AK128639 AK291441 AB384742 AM392728 AM392771 AM393258 AM393700 CU687290	-124124	+	TSC_hg19_v1_chr7_+_106505893 NM_002649 X83368	-303398	+	TSC_hg19_v1_chr7_+_106505782 AK313753 BX648341 BC035683	-303553	+	AK295910 NM_001244262 TSC_hg19_v1_chr7_+_106809447 AK298504 BC017069 NM_012257	112	+	NM_005295 AK122621 AK307393	301175	+	TSC_hg19_v1_chr7_-_107204366 HQ258000 AF058718	395083	-	BC075800|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##M31158|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##NM_002736|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AK128639|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AK291441|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM392728|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM392771|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM393258|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM393700|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##NM_002649|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##X83368|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##AK313753|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##BX648341|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##BC035683|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##AK295910|HBP1|26959|HMG-box transcription factor 1##NM_001244262|HBP1|26959|HMG-box transcription factor 1##AK298504|HBP1|26959|HMG-box transcription factor 1##BC017069|HBP1|26959|HMG-box transcription factor 1##NM_012257|HBP1|26959|HMG-box transcription factor 1##NM_005295|GPR22|2845|G protein-coupled receptor 22##AK122621|GPR22|2845|G protein-coupled receptor 22##AK307393|GPR22|2845|G protein-coupled receptor 22##HQ258000|COG5|10466|component of oligomeric golgi complex 5##AF058718|COG5|10466|component of oligomeric golgi complex 5	1.241403	denovo_WM_21:49:0.918	denovo_WM_21:-94:0.222
chr9	139780736	139780861	reg1000052.p1	15.565	+	BT009863 CR541914 DQ891577 DQ894770 AB590058 TSC_hg19_v1_chr9_-_139760757 AJ005259 AB002282 AB002283 BC015500 NM_003792 NM_153200	-20060	-	TSC_hg19_v1_chr9_+_139746797 AY358419 NM_206920 BC144258 BC144259	-33989	+	TSC_hg19_v1_chr9_+_139743861 AF161490 AL136644 BC024648 AF164795 AB528207 AM393672 AF393504 CR533481	-36931	+	TSC_hg19_v1_chr9_+_139780967 BX538160 BC043492 NM_021138 AK222961 AK294607 AK298370	155	+	U12597 BC033810 AK054686 BC032410 TSC_hg19_v1_chr9_+_139780991	189	+	TSC_hg19_v1_chr9_-_139839068 AK026081	58270	-	BT009863|EDF1|8721|endothelial differentiation-related factor 1##CR541914|EDF1|8721|endothelial differentiation-related factor 1##DQ891577|EDF1|8721|endothelial differentiation-related factor 1##DQ894770|EDF1|8721|endothelial differentiation-related factor 1##AB002282|EDF1|8721|endothelial differentiation-related factor 1##AB002283|EDF1|8721|endothelial differentiation-related factor 1##BC015500|EDF1|8721|endothelial differentiation-related factor 1##NM_003792|EDF1|8721|endothelial differentiation-related factor 1##NM_153200|EDF1|8721|endothelial differentiation-related factor 1##AY358419|MAMDC4|158056|MAM domain containing 4##NM_206920|MAMDC4|158056|MAM domain containing 4##BC144258|MAMDC4|158056|MAM domain containing 4##BC144259|MAMDC4|158056|MAM domain containing 4##AF161490|PHPT1|29085|phosphohistidine phosphatase 1##AL136644|PHPT1|29085|phosphohistidine phosphatase 1##BC024648|PHPT1|29085|phosphohistidine phosphatase 1##AF164795|PHPT1|29085|phosphohistidine phosphatase 1##AM393672|PHPT1|29085|phosphohistidine phosphatase 1##AF393504|PHPT1|29085|phosphohistidine phosphatase 1##CR533481|PHPT1|29085|phosphohistidine phosphatase 1##BX538160|TRAF2|7186|TNF receptor-associated factor 2##BC043492|TRAF2|7186|TNF receptor-associated factor 2##NM_021138|TRAF2|7186|TNF receptor-associated factor 2##AK222961|TRAF2|7186|TNF receptor-associated factor 2##AK294607|TRAF2|7186|TNF receptor-associated factor 2##AK298370|TRAF2|7186|TNF receptor-associated factor 2##BC033810|TRAF2|7186|TNF receptor-associated factor 2##AK054686|TRAF2|7186|TNF receptor-associated factor 2##BC032410|TRAF2|7186|TNF receptor-associated factor 2##AK026081|FBXW5|54461|F-box and WD repeat domain containing 5	1.0099	denovo_WM_21:-4:0.221	denovo_WM_21:-38:0.789
chr14	21737674	21737818	reg1000019.p1	15.504	+	M16342 BC108658 BX247992 BC089438 BC008364 TSC_hg19_v1_chr14_-_21737587 BC003394 BC071943 BX247961 M29063 AB209527 AK223517 BC066932 AK298906 AK312382 D28382 AK297482 AK299923 AK312338 BC103758 AK292619 BC007052 BC008423 AL833432 BC092433 AK225032 AK302213 NM_001077442 NM_001077443 NM_004500 NM_031314	-175	-	NM_001004731 BC137304 BC137305	-113544	-	TSC_hg19_v1_chr14_-_21572798 NM_001102454	-164921	-	AJ417067 NM_020366	18389	+	AB464256 TSC_hg19_v1_chr14_-_21852126 BC012582 BC064561 BC073849 AK001719	114376	-	BC000565 BC014046 TSC_hg19_v1_chr14_-_21852177 BC021561 BC111402	114423	-	M16342|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC108658|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BX247992|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC089438|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC008364|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC003394|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC071943|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BX247961|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##M29063|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AB209527|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK223517|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC066932|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK298906|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK312382|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##D28382|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK297482|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK299923|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK312338|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC103758|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK292619|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC007052|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC008423|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AL833432|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC092433|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK225032|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK302213|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_001077442|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_001077443|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_004500|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_031314|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_001004731|OR5AU1|390445|olfactory receptor, family 5, subfamily AU, member 1##BC137304|OR5AU1|390445|olfactory receptor, family 5, subfamily AU, member 1##BC137305|OR5AU1|390445|olfactory receptor, family 5, subfamily AU, member 1##NM_001102454|ZNF219|51222|zinc finger protein 219##AJ417067|RPGRIP1|57096|retinitis pigmentosa GTPase regulator interacting protein 1##NM_020366|RPGRIP1|57096|retinitis pigmentosa GTPase regulator interacting protein 1##BC012582|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC064561|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC073849|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##AK001719|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC000565|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC014046|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC111402|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)	2.715099	denovo_WM_21:-25:0.830	denovo_WM_21:82:0.920	denovo_WM_21:-93:0.965
chr1	151763080	151763252	reg1000065.p1	15.419	+	AK295948 AK303063 BC032690 TSC_hg19_v1_chr1_-_151762965 AK226092 BC022467 AK316279 AK056402 AK225160 AF119121 AF227192 NM_001083963 NM_001083964 NM_001083965 NM_006862	-196	-	AF175296 NM_016178 BC128558 BC128559 AY713300	-24006	+	AK026363 AK309841 TSC_hg19_v1_chr1_-_151735973 NM_031420	-27161	-	TSC_hg19_v1_chr1_+_151763331 BC038201	98	+	BC137220 BC137221 AY358115 NM_001004432	14645	-	AL834219 NM_001001523 AK097994	35393	-	AK295948|TDRKH|11022|tudor and KH domain containing##AK303063|TDRKH|11022|tudor and KH domain containing##BC032690|TDRKH|11022|tudor and KH domain containing##AK226092|TDRKH|11022|tudor and KH domain containing##BC022467|TDRKH|11022|tudor and KH domain containing##AK316279|TDRKH|11022|tudor and KH domain containing##AK056402|TDRKH|11022|tudor and KH domain containing##AK225160|TDRKH|11022|tudor and KH domain containing##AF119121|TDRKH|11022|tudor and KH domain containing##AF227192|TDRKH|11022|tudor and KH domain containing##NM_001083963|TDRKH|11022|tudor and KH domain containing##NM_001083964|TDRKH|11022|tudor and KH domain containing##NM_001083965|TDRKH|11022|tudor and KH domain containing##NM_006862|TDRKH|11022|tudor and KH domain containing##AF175296|OAZ3|51686|ornithine decarboxylase antizyme 3##NM_016178|OAZ3|51686|ornithine decarboxylase antizyme 3##BC128558|OAZ3|51686|ornithine decarboxylase antizyme 3##BC128559|OAZ3|51686|ornithine decarboxylase antizyme 3##AY713300|OAZ3|51686|ornithine decarboxylase antizyme 3##AK026363|MRPL9|65005|mitochondrial ribosomal protein L9##AK309841|MRPL9|65005|mitochondrial ribosomal protein L9##NM_031420|MRPL9|65005|mitochondrial ribosomal protein L9##BC137220|LINGO4|339398|leucine rich repeat and Ig domain containing 4##BC137221|LINGO4|339398|leucine rich repeat and Ig domain containing 4##AY358115|LINGO4|339398|leucine rich repeat and Ig domain containing 4##NM_001004432|LINGO4|339398|leucine rich repeat and Ig domain containing 4##AL834219|RORC|6097|RAR-related orphan receptor C##NM_001001523|RORC|6097|RAR-related orphan receptor C##AK097994|RORC|6097|RAR-related orphan receptor C	1.222192	denovo_WM_21:10:0.862	denovo_WM_21:73:0.324
chr19	6737680	6737831	reg1000051.p1	15.371	+	TSC_hg19_v1_chr19_-_6737615 BC146909 AX775899 NM_001080452	-137	-	TSC_hg19_v1_chr19_-_6737592 AK291968	-160	-	AL365404 TSC_hg19_v1_chr19_-_6737583	-180	-	TSC_hg19_v1_chr19_+_6739712 NM_004240 AK313296 AB007845 AB072596 AK223109 AF502289 AJ000414 AY081141 BC013002 CU680464 DQ892747 DQ895993 AF380114 BT006698 BT020167 BT020171 CR536513	1979	+	TSC_hg19_v1_chr19_-_6767447 AK225386 AK292781 AK299406 AK310659 BC006281 AF124249 AY358406 NM_005490 AK290293	29752	-	TSC_hg19_v1_chr19_+_6772718 NM_005428 AK225710 AK313307	34969	+	BC146909|GPR108|56927|G protein-coupled receptor 108##AX775899|GPR108|56927|G protein-coupled receptor 108##NM_001080452|GPR108|56927|G protein-coupled receptor 108##AK291968|GPR108|56927|G protein-coupled receptor 108##AL365404|GPR108|56927|G protein-coupled receptor 108##NM_004240|TRIP10|9322|thyroid hormone receptor interactor 10##AK313296|TRIP10|9322|thyroid hormone receptor interactor 10##AB007845|TRIP10|9322|thyroid hormone receptor interactor 10##AB072596|TRIP10|9322|thyroid hormone receptor interactor 10##AK223109|TRIP10|9322|thyroid hormone receptor interactor 10##AF502289|TRIP10|9322|thyroid hormone receptor interactor 10##AJ000414|TRIP10|9322|thyroid hormone receptor interactor 10##AY081141|TRIP10|9322|thyroid hormone receptor interactor 10##BC013002|TRIP10|9322|thyroid hormone receptor interactor 10##DQ892747|TRIP10|9322|thyroid hormone receptor interactor 10##DQ895993|TRIP10|9322|thyroid hormone receptor interactor 10##AF380114|TRIP10|9322|thyroid hormone receptor interactor 10##BT006698|TRIP10|9322|thyroid hormone receptor interactor 10##BT020167|TRIP10|9322|thyroid hormone receptor interactor 10##BT020171|TRIP10|9322|thyroid hormone receptor interactor 10##CR536513|TRIP10|9322|thyroid hormone receptor interactor 10##AK225386|SH2D3A|10045|SH2 domain containing 3A##AK292781|SH2D3A|10045|SH2 domain containing 3A##AK299406|SH2D3A|10045|SH2 domain containing 3A##AK310659|SH2D3A|10045|SH2 domain containing 3A##BC006281|SH2D3A|10045|SH2 domain containing 3A##AF124249|SH2D3A|10045|SH2 domain containing 3A##AY358406|SH2D3A|10045|SH2 domain containing 3A##NM_005490|SH2D3A|10045|SH2 domain containing 3A##AK290293|SH2D3A|10045|SH2 domain containing 3A##NM_005428|VAV1|7409|vav 1 guanine nucleotide exchange factor##AK225710|VAV1|7409|vav 1 guanine nucleotide exchange factor##AK313307|VAV1|7409|vav 1 guanine nucleotide exchange factor	1.530929	denovo_WM_21:-54:0.938	denovo_WM_21:-104:0.593
chr19	10828308	10828427	reg1000006.p1	15.307	+	NM_031209 TSC_hg19_v1_chr19_+_10812129 AK314308 AK057877 AK225173 AK294166 AF302783 AF370379 BC015350 AF302784	-16209	+	TSC_hg19_v1_chr19_+_10791025 AJ271747	-37319	+	AB528039 AF167569 AF167570 CU687952 HQ322263 HQ322264 HQ322265 TSC_hg19_v1_chr19_+_10781789	-46641	+	TSC_hg19_v1_chr19_+_10828738 NM_001005360 NM_001005361 NM_001005362 NM_001190716 NM_004945	365	+	TSC_hg19_v1_chr19_+_10828754 AK312260	387	+	TSC_hg19_v1_chr19_+_10828765 BC054501	400	+	NM_031209|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AK314308|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AK057877|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AK225173|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AK294166|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AF302783|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AF370379|QTRT1|81890|queuine tRNA-ribosyltransferase 1##BC015350|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AF302784|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AF167569|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AF167570|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##HQ322263|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##HQ322264|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##HQ322265|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_001005360|DNM2|1785|dynamin 2##NM_001005361|DNM2|1785|dynamin 2##NM_001005362|DNM2|1785|dynamin 2##NM_001190716|DNM2|1785|dynamin 2##NM_004945|DNM2|1785|dynamin 2##AK312260|DNM2|1785|dynamin 2##BC054501|DNM2|1785|dynamin 2	1.066614	denovo_WM_21:1:0.949
chr19	37808566	37808727	reg1000091.p1	15.189	+	AK093182 AX747975 AY438646 NM_152604	-91281	+	TSC_hg19_v1_chr19_+_37709098 AK122892	-99498	+	BC051277 BC067088 BC080550 TSC_hg19_v1_chr19_-_37701446 AY147015 NM_152279	-107229	-	TSC_hg19_v1_chr19_+_37808794 AK056243	179	+	TSC_hg19_v1_chr19_+_37825560 AK301601 AB013897 AK299969 AK223616 BC017256 NM_181786 BC010024	16909	+	TSC_hg19_v1_chr19_+_37862089 NM_032453 BC014325 AK301135 AK091585 AX747074	53435	+	AK093182|ZNF383|163087|zinc finger protein 383##AY438646|ZNF383|163087|zinc finger protein 383##NM_152604|ZNF383|163087|zinc finger protein 383##AK122892|ZNF383|163087|zinc finger protein 383##BC051277|ZNF585B|92285|zinc finger protein 585B##BC067088|ZNF585B|92285|zinc finger protein 585B##BC080550|ZNF585B|92285|zinc finger protein 585B##AY147015|ZNF585B|92285|zinc finger protein 585B##NM_152279|ZNF585B|92285|zinc finger protein 585B##AK056243|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##AK301601|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##AB013897|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##AK299969|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##AK223616|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##BC017256|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##NM_181786|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##BC010024|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##NM_032453|ZNF527|84503|zinc finger protein 527##BC014325|ZNF527|84503|zinc finger protein 527##AK301135|ZNF527|84503|zinc finger protein 527##AK091585|ZNF527|84503|zinc finger protein 527	1.888916	denovo_WM_21:-23:0.985	denovo_WM_21:111:0.904
chr14	104181817	104181948	reg1000016.p1	14.983	+	TSC_hg19_v1_chr14_-_104181759 AK022829 BC011725 BX161398 BC001036 AK023646 NM_001100118 NM_001100119 NM_005432	-99	-	AK124498 TSC_hg19_v1_chr14_-_104178577	-3374	-	TSC_hg19_v1_chr14_+_104095547 NM_001130107 NM_005552 NM_182923 AK294508 BC008881 L04733 AF527736 AY180164	-86231	+	TSC_hg19_v1_chr14_+_104182144 NM_001198953 NM_024071 BC005999 AK057816 BC001130 AY395756 AK290519 BX248261	234	+	BC136527 AJ318887 TSC_hg19_v1_chr14_-_104313913 BC035446 NM_015316	131970	-	BX161388 TSC_hg19_v1_chr14_-_104387847 BC047289 BC063419 BC000429 BC001944	205963	-	AK022829|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##BC011725|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##BX161398|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##BC001036|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##AK023646|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##NM_001100118|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##NM_001100119|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##NM_005432|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##AK124498|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##NM_001130107|KLC1|3831|kinesin light chain 1##NM_005552|KLC1|3831|kinesin light chain 1##NM_182923|KLC1|3831|kinesin light chain 1##AK294508|KLC1|3831|kinesin light chain 1##BC008881|KLC1|3831|kinesin light chain 1##L04733|KLC1|3831|kinesin light chain 1##AF527736|KLC1|3831|kinesin light chain 1##AY180164|KLC1|3831|kinesin light chain 1##NM_001198953|ZFYVE21|79038|zinc finger, FYVE domain containing 21##NM_024071|ZFYVE21|79038|zinc finger, FYVE domain containing 21##BC005999|ZFYVE21|79038|zinc finger, FYVE domain containing 21##AK057816|ZFYVE21|79038|zinc finger, FYVE domain containing 21##BC001130|ZFYVE21|79038|zinc finger, FYVE domain containing 21##AY395756|ZFYVE21|79038|zinc finger, FYVE domain containing 21##AK290519|ZFYVE21|79038|zinc finger, FYVE domain containing 21##BX248261|ZFYVE21|79038|zinc finger, FYVE domain containing 21##BC136527|PPP1R13B|23368|protein phosphatase 1, regulatory subunit 13B##AJ318887|PPP1R13B|23368|protein phosphatase 1, regulatory subunit 13B##BC035446|PPP1R13B|23368|protein phosphatase 1, regulatory subunit 13B##NM_015316|PPP1R13B|23368|protein phosphatase 1, regulatory subunit 13B##BX161388|C14orf2|9556|chromosome 14 open reading frame 2##BC047289|C14orf2|9556|chromosome 14 open reading frame 2##BC063419|C14orf2|9556|chromosome 14 open reading frame 2##BC000429|C14orf2|9556|chromosome 14 open reading frame 2##BC001944|C14orf2|9556|chromosome 14 open reading frame 2	1.035708	denovo_WM_21:-28:0.685
chr15	89631446	89631607	reg1000062.p1	14.957	+	NM_007011 NM_152924	-146	+	BC003610 AK095908 AK222735 AK223182 AK304627 AK310357 AK312640 U58516 AY141974 TSC_hg19_v1_chr15_-_89456611 NM_001114614 NM_005928	-174887	-	BT006948 EU832670 EU832749 CU678532 TSC_hg19_v1_chr15_-_89456571	-174966	-	TSC_hg19_v1_chr15_+_89631652 BC090052 AF546700 BC019248	122	+	TSC_hg19_v1_chr15_+_89631708 AL110291 AK222841 AK290340 AK223083 AK296827	177	+	TSC_hg19_v1_chr15_+_89631738 X12433	211	+	NM_007011|ABHD2|11057|abhydrolase domain containing 2##NM_152924|ABHD2|11057|abhydrolase domain containing 2##BC003610|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK095908|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK222735|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK223182|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK304627|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK310357|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK312640|MFGE8|4240|milk fat globule-EGF factor 8 protein##U58516|MFGE8|4240|milk fat globule-EGF factor 8 protein##AY141974|MFGE8|4240|milk fat globule-EGF factor 8 protein##NM_001114614|MFGE8|4240|milk fat globule-EGF factor 8 protein##NM_005928|MFGE8|4240|milk fat globule-EGF factor 8 protein##BT006948|MFGE8|4240|milk fat globule-EGF factor 8 protein##EU832670|MFGE8|4240|milk fat globule-EGF factor 8 protein##EU832749|MFGE8|4240|milk fat globule-EGF factor 8 protein##BC090052|ABHD2|11057|abhydrolase domain containing 2##AF546700|ABHD2|11057|abhydrolase domain containing 2##BC019248|ABHD2|11057|abhydrolase domain containing 2##AL110291|ABHD2|11057|abhydrolase domain containing 2##AK222841|ABHD2|11057|abhydrolase domain containing 2##AK290340|ABHD2|11057|abhydrolase domain containing 2##AK223083|ABHD2|11057|abhydrolase domain containing 2##AK296827|ABHD2|11057|abhydrolase domain containing 2##X12433|ABHD2|11057|abhydrolase domain containing 2	0.0	
chr20	32308110	32308260	reg1000067.p1	14.868	+	TSC_hg19_v1_chr20_-_32308117 CR533471 CU674580 EU832287 EU832372 BC001147 AK023879 AF072864 AL136648 AK301532 AK316589 AK297018 NM_007238 NM_183397	-171	-	TSC_hg19_v1_chr20_-_32274190 BC065188 S49592 M96577 BC050369 NM_005225	-33988	-	AB590894 TSC_hg19_v1_chr20_-_32274123 BC058902	-34075	-	BC132873 BC144188 BC157823 BC146811 BC094738 NM_032819 BC063492 BC040440 AB587355 HQ258664	11611	+	TSC_hg19_v1_chr20_+_32399127 NM_176812	90901	+	TSC_hg19_v1_chr20_+_32399155 AB100261 BC033859 AY726594 AY329085	91035	+	CR533471|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##EU832287|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##EU832372|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##BC001147|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK023879|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AF072864|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AL136648|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK301532|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK316589|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK297018|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##NM_007238|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##NM_183397|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##S49592|E2F1|1869|E2F transcription factor 1##M96577|E2F1|1869|E2F transcription factor 1##BC050369|E2F1|1869|E2F transcription factor 1##NM_005225|E2F1|1869|E2F transcription factor 1##BC058902|E2F1|1869|E2F transcription factor 1##BC132873|ZNF341|84905|zinc finger protein 341##BC144188|ZNF341|84905|zinc finger protein 341##BC157823|ZNF341|84905|zinc finger protein 341##BC146811|ZNF341|84905|zinc finger protein 341##BC094738|ZNF341|84905|zinc finger protein 341##NM_032819|ZNF341|84905|zinc finger protein 341##BC063492|ZNF341|84905|zinc finger protein 341##BC040440|ZNF341|84905|zinc finger protein 341##HQ258664|ZNF341|84905|zinc finger protein 341##NM_176812|CHMP4B|128866|charged multivesicular body protein 4B##AB100261|CHMP4B|128866|charged multivesicular body protein 4B##BC033859|CHMP4B|128866|charged multivesicular body protein 4B##AY726594|CHMP4B|128866|charged multivesicular body protein 4B##AY329085|CHMP4B|128866|charged multivesicular body protein 4B	2.885277	denovo_WM_21:-23:0.981	denovo_WM_21:60:0.952
chr2	27008668	27008825	reg1000080.p1	14.864	+	TSC_hg19_v1_chr2_+_26987155 AK000562 NM_017877 BC028081 BC035519 BX647807 AK075164 AK296996 BC011013 AK299598 AY358820 AK222929 BX648017 CU688388 CR457243	-21577	+	TSC_hg19_v1_chr2_+_26915710 BC140701 NM_002246 AF006823 AF065163	-93103	+	BC140923 NM_001029881 BC127685 BC127684	-144524	-	NM_001809 NM_001042426 TSC_hg19_v1_chr2_+_27008894	146	+	TSC_hg19_v1_chr2_+_27008924 U14518 BC000881 BC002703 CU674442 BT007246	242	+	AF264015 NM_020134 TSC_hg19_v1_chr2_+_27070999 BC002874 NM_001253723 NM_001253724	62380	+	AK000562|C2orf18|54978|chromosome 2 open reading frame 18##NM_017877|C2orf18|54978|chromosome 2 open reading frame 18##BC028081|C2orf18|54978|chromosome 2 open reading frame 18##BC035519|C2orf18|54978|chromosome 2 open reading frame 18##BX647807|C2orf18|54978|chromosome 2 open reading frame 18##AK075164|C2orf18|54978|chromosome 2 open reading frame 18##AK296996|C2orf18|54978|chromosome 2 open reading frame 18##BC011013|CENPA|1058|centromere protein A##AK299598|C2orf18|54978|chromosome 2 open reading frame 18##AY358820|C2orf18|54978|chromosome 2 open reading frame 18##AK222929|C2orf18|54978|chromosome 2 open reading frame 18##BX648017|C2orf18|54978|chromosome 2 open reading frame 18##CR457243|C2orf18|54978|chromosome 2 open reading frame 18##BC140701|KCNK3|3777|potassium channel, subfamily K, member 3##NM_002246|KCNK3|3777|potassium channel, subfamily K, member 3##AF006823|KCNK3|3777|potassium channel, subfamily K, member 3##AF065163|KCNK3|3777|potassium channel, subfamily K, member 3##BC140923|CIB4|130106|calcium and integrin binding family member 4##NM_001029881|CIB4|130106|calcium and integrin binding family member 4##BC127685|CIB4|130106|calcium and integrin binding family member 4##BC127684|CIB4|130106|calcium and integrin binding family member 4##NM_001809|CENPA|1058|centromere protein A##NM_001042426|CENPA|1058|centromere protein A##U14518|CENPA|1058|centromere protein A##BC000881|CENPA|1058|centromere protein A##BC002703|CENPA|1058|centromere protein A##BT007246|CENPA|1058|centromere protein A##AF264015|DPYSL5|56896|dihydropyrimidinase-like 5##NM_020134|DPYSL5|56896|dihydropyrimidinase-like 5##BC002874|DPYSL5|56896|dihydropyrimidinase-like 5##NM_001253723|DPYSL5|56896|dihydropyrimidinase-like 5##NM_001253724|DPYSL5|56896|dihydropyrimidinase-like 5	1.390173	denovo_WM_21:-26:0.349	denovo_WM_21:48:0.976
chr19	2945001	2945107	reg1000033.p1	14.786	+	TSC_hg19_v1_chr19_-_2944927 AK290979 BC043354 BC062561 NM_021217	-111	-	EF534355 NM_173480 TSC_hg19_v1_chr19_+_2900954 BX537601 BC028974 AK314848	-44119	+	AK021699 AK225297 NM_024967 BC009374	-77712	+	TSC_hg19_v1_chr19_+_2977532 NM_001143986 NM_024760 AK024071 BC013986 BC020206 BC007329 BC068052	32512	+	CU675966 AK308608 M99436 AK312285 BC017364 AK303102 NM_003260 TSC_hg19_v1_chr19_-_3029294	84045	-	AK293407 NM_001144762	84557	-	AK290979|ZNF77|58492|zinc finger protein 77##BC043354|ZNF77|58492|zinc finger protein 77##BC062561|ZNF77|58492|zinc finger protein 77##NM_021217|ZNF77|58492|zinc finger protein 77##EF534355|ZNF57|126295|zinc finger protein 57##NM_173480|ZNF57|126295|zinc finger protein 57##BX537601|ZNF57|126295|zinc finger protein 57##BC028974|ZNF57|126295|zinc finger protein 57##AK314848|ZNF57|126295|zinc finger protein 57##AK021699|ZNF556|80032|zinc finger protein 556##AK225297|ZNF556|80032|zinc finger protein 556##NM_024967|ZNF556|80032|zinc finger protein 556##BC009374|ZNF556|80032|zinc finger protein 556##NM_001143986|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)##NM_024760|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)##AK024071|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)##BC013986|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)##BC020206|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)##BC007329|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)##BC068052|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)##AK308608|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)##M99436|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)##AK312285|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)##BC017364|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)##AK303102|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)##NM_003260|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)##AK293407|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)##NM_001144762|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)	2.932738	denovo_WM_21:-35:0.959	denovo_WM_21:68:0.959	denovo_WM_21:106:0.826
chr2	88927129	88927302	reg1000018.p1	14.703	+	AF110146 BC126354 BC126356 AK128659 TSC_hg19_v1_chr2_-_88926983 AK315287 AF193339 NM_004836	-237	-	AK058098 NM_152670 BC029522	-103031	+	NM_001135649	-175163	-	TSC_hg19_v1_chr2_+_88991190 NM_144563 AY050633 BC015529	64000	+	BX648045 TSC_hg19_v1_chr2_+_89065391 AL137717 BC031698	138186	+	S49006 TSC_hg19_v1_chr2_-_89165772	238497	-	AF110146|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##BC126354|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##BC126356|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##AK128659|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##AK315287|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##AF193339|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##NM_004836|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##AK058098|C2orf51|200523|chromosome 2 open reading frame 51##NM_152670|C2orf51|200523|chromosome 2 open reading frame 51##BC029522|C2orf51|200523|chromosome 2 open reading frame 51##NM_001135649|FOXI3|344167|forkhead box I3##NM_144563|RPIA|22934|ribose 5-phosphate isomerase A##AY050633|RPIA|22934|ribose 5-phosphate isomerase A##BC015529|RPIA|22934|ribose 5-phosphate isomerase A##BX648045|ANKRD36BP2|645784|ankyrin repeat domain 36B pseudogene 2##AL137717|ANKRD36BP2|645784|ankyrin repeat domain 36B pseudogene 2##BC031698|ANKRD36BP2|645784|ankyrin repeat domain 36B pseudogene 2	0.157093	
chr7	44887893	44888034	reg1000069.p2	14.609	+	TSC_hg19_v1_chr7_-_44887698 NM_012412 NM_138635 NM_201436 NM_201516 NM_201517	-237	-	TSC_hg19_v1_chr7_-_44887667 AK023973	-294	-	BC014885 AB209001 AK129989 BC000098 BC070169 TSC_hg19_v1_chr7_-_44887654	-326	-	AB464680 TSC_hg19_v1_chr7_-_44924953 AY039216 NM_033224 BC101735 BC101737	37006	-	AB463131 TSC_hg19_v1_chr7_-_45018615 AK074050	130624	-	BC113544 BC117241 TSC_hg19_v1_chr7_-_45018675 AB290179 AL832302	130699	-	NM_012412|H2AFV|94239|H2A histone family, member V##NM_138635|H2AFV|94239|H2A histone family, member V##NM_201436|H2AFV|94239|H2A histone family, member V##NM_201516|H2AFV|94239|H2A histone family, member V##NM_201517|H2AFV|94239|H2A histone family, member V##AK023973|H2AFV|94239|H2A histone family, member V##BC014885|H2AFV|94239|H2A histone family, member V##AB209001|H2AFV|94239|H2A histone family, member V##AK129989|H2AFV|94239|H2A histone family, member V##BC000098|H2AFV|94239|H2A histone family, member V##BC070169|H2AFV|94239|H2A histone family, member V##AY039216|PURB|5814|purine-rich element binding protein B##NM_033224|PURB|5814|purine-rich element binding protein B##BC101735|PURB|5814|purine-rich element binding protein B##BC101737|PURB|5814|purine-rich element binding protein B##AK074050|MYO1G|64005|myosin IG##BC113544|MYO1G|64005|myosin IG##BC117241|MYO1G|64005|myosin IG##AB290179|MYO1G|64005|myosin IG##AL832302|MYO1G|64005|myosin IG	1.758205	denovo_WM_21:-14:0.921	denovo_WM_21:-45:0.809
chr17	74667855	74668000	reg1000098.p1	14.377	+	AY096001 CU692632 BC022462 TSC_hg19_v1_chr17_-_74639807 AK310906 AY358918 BC063830 NM_018414	-28121	-	NM_006456 TSC_hg19_v1_chr17_-_74582222	-85740	-	TSC_hg19_v1_chr17_-_74581934 AK225943	-85986	-	TSC_hg19_v1_chr17_-_74707048 AB590448 NM_001008528 NM_001008529 NM_198530 BC094776	39105	-	TSC_hg19_v1_chr17_-_74707067 BC053983	39173	-	BC016837 TSC_hg19_v1_chr17_-_74722026	54065	-	AY096001|ST6GALNAC1|55808|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1##BC022462|ST6GALNAC1|55808|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1##AK310906|ST6GALNAC1|55808|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1##AY358918|ST6GALNAC1|55808|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1##BC063830|ST6GALNAC1|55808|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1##NM_018414|ST6GALNAC1|55808|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1##NM_006456|ST6GALNAC2|10610|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2##AK225943|ST6GALNAC2|10610|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2##NM_001008528|MXRA7|439921|matrix-remodelling associated 7##NM_001008529|MXRA7|439921|matrix-remodelling associated 7##NM_198530|MXRA7|439921|matrix-remodelling associated 7##BC094776|MXRA7|439921|matrix-remodelling associated 7##BC053983|MXRA7|439921|matrix-remodelling associated 7##BC016837|JMJD6|23210|jumonji domain containing 6	0.377247	denovo_WM_21:60:0.364
chr5	139781055	139781217	reg1000053.p1	14.353	+	TSC_hg19_v1_chr5_-_139781027 BC030152	-95	-	TSC_hg19_v1_chr5_-_139780719 BC079833	-419	-	AF332961 NM_031467 AF336237 BC136262 BC143602 AF313465 AB032762	-41330	+	TSC_hg19_v1_chr5_+_139781398 NM_001197030 NM_017747 NM_017978 NM_020690 NM_024668	261	+	TSC_hg19_v1_chr5_+_139781428 AK098574 AK074173 AF258557	297	+	TSC_hg19_v1_chr5_+_139781454 BC004457 BC009909 BC144623	323	+	AF332961|SLC4A9|83697|solute carrier family 4, sodium bicarbonate cotransporter, member 9##NM_031467|SLC4A9|83697|solute carrier family 4, sodium bicarbonate cotransporter, member 9##AF336237|SLC4A9|83697|solute carrier family 4, sodium bicarbonate cotransporter, member 9##BC136262|SLC4A9|83697|solute carrier family 4, sodium bicarbonate cotransporter, member 9##BC143602|SLC4A9|83697|solute carrier family 4, sodium bicarbonate cotransporter, member 9##AF313465|SLC4A9|83697|solute carrier family 4, sodium bicarbonate cotransporter, member 9##AB032762|SLC4A9|83697|solute carrier family 4, sodium bicarbonate cotransporter, member 9##NM_001197030|ANKHD1|54882|ankyrin repeat and KH domain containing 1##NM_017747|ANKHD1|54882|ankyrin repeat and KH domain containing 1##NM_017978|ANKHD1|54882|ankyrin repeat and KH domain containing 1##NM_020690|ANKHD1-EIF4EBP3|404734|ANKHD1-EIF4EBP3 readthrough##NM_024668|ANKHD1|54882|ankyrin repeat and KH domain containing 1##AK098574|ANKHD1|54882|ankyrin repeat and KH domain containing 1##AK074173|ANKHD1|54882|ankyrin repeat and KH domain containing 1##AF258557|ANKHD1|54882|ankyrin repeat and KH domain containing 1##BC004457|ANKHD1|54882|ankyrin repeat and KH domain containing 1##BC009909|ANKHD1|54882|ankyrin repeat and KH domain containing 1##BC144623|ANKHD1-EIF4EBP3|404734|ANKHD1-EIF4EBP3 readthrough	0.319697	denovo_WM_21:63:0.298
chr5	151151258	151151443	reg1000047.p2	14.276	+	TSC_hg19_v1_chr5_-_151150991 AB593120	-377	-	TSC_hg19_v1_chr5_-_151138170 AK091843 AX747215 NM_004045 AK293063 BC112248 BC112250	-13135	-	TSC_hg19_v1_chr5_-_151066495 AK096969 AK299441 AK315591 D28381 BC072457 NM_003118	-84842	-	TSC_hg19_v1_chr5_+_151151479 BX648012 NM_005754 NM_198395	122	+	TSC_hg19_v1_chr5_+_151151490 AK303580	146	+	TSC_hg19_v1_chr5_+_151151512 AK309172 AK311635 AK312572 BC006997	162	+	AB593120|LOC100652758|100652758|uncharacterized LOC100652758##AK091843|ATOX1|475|ATX1 antioxidant protein 1 homolog (yeast)##NM_004045|ATOX1|475|ATX1 antioxidant protein 1 homolog (yeast)##AK293063|ATOX1|475|ATX1 antioxidant protein 1 homolog (yeast)##BC112248|ATOX1|475|ATX1 antioxidant protein 1 homolog (yeast)##BC112250|ATOX1|475|ATX1 antioxidant protein 1 homolog (yeast)##AK096969|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##AK299441|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##AK315591|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##D28381|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##BC072457|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##NM_003118|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##BX648012|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1##NM_005754|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1##NM_198395|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1##AK303580|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1##AK309172|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1##AK312572|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1##BC006997|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1	1.088251	denovo_WM_21:11:0.744	denovo_WM_21:-63:0.344
chr12	56367552	56367737	reg1000072.p1	14.247	+	TSC_hg19_v1_chr12_+_56360579 NM_001798 NM_052827 M68520 AK293246 AK291941 X62071 BC003065	-7055	+	AK092881 AK130180 NM_006928	-7168	-	BT007202 U01874 EU176186 BC001414 M32295 M77348 S73003 TSC_hg19_v1_chr12_-_56359827 AK300150 NM_001200053 NM_001200054	-7825	-	NM_001252036 BC032740 TSC_hg19_v1_chr12_+_56367813 NM_001252037 NM_002868	118	+	TSC_hg19_v1_chr12_+_56367857 BC040143 BX647808 BX537408	206	+	TSC_hg19_v1_chr12_+_56367880 BC050558	235	+	NM_001798|CDK2|1017|cyclin-dependent kinase 2##NM_052827|CDK2|1017|cyclin-dependent kinase 2##M68520|CDK2|1017|cyclin-dependent kinase 2##AK293246|CDK2|1017|cyclin-dependent kinase 2##AK291941|CDK2|1017|cyclin-dependent kinase 2##X62071|CDK2|1017|cyclin-dependent kinase 2##BC003065|CDK2|1017|cyclin-dependent kinase 2##AK092881|PMEL|6490|premelanosome protein##AK130180|PMEL|6490|premelanosome protein##NM_006928|PMEL|6490|premelanosome protein##BT007202|PMEL|6490|premelanosome protein##U01874|PMEL|6490|premelanosome protein##EU176186|PMEL|6490|premelanosome protein##BC001414|PMEL|6490|premelanosome protein##M32295|PMEL|6490|premelanosome protein##M77348|PMEL|6490|premelanosome protein##S73003|PMEL|6490|premelanosome protein##AK300150|PMEL|6490|premelanosome protein##NM_001200053|PMEL|6490|premelanosome protein##NM_001200054|PMEL|6490|premelanosome protein##NM_001252036|RAB5B|5869|RAB5B, member RAS oncogene family##BC032740|RAB5B|5869|RAB5B, member RAS oncogene family##NM_001252037|RAB5B|5869|RAB5B, member RAS oncogene family##NM_002868|RAB5B|5869|RAB5B, member RAS oncogene family##BC040143|RAB5B|5869|RAB5B, member RAS oncogene family##BX647808|RAB5B|5869|RAB5B, member RAS oncogene family##BX537408|RAB5B|5869|RAB5B, member RAS oncogene family##BC050558|RAB5B|5869|RAB5B, member RAS oncogene family	0.306021	denovo_WM_21:21:0.291
chr19	4246936	4247073	reg1000096.p1	14.149	+	BC015364 L08187 NM_005755 BC046112 AB528398 DQ891589 EU176581 CU677281	-17484	+	NM_133475	-63654	+	TSC_hg19_v1_chr19_-_4182561 DQ896358 EU176413 AB528632 CR457200 CU678868 BC005026 BC000090 BC004218 AK299420 BC028220 AK293348 AK315048 AK301247 AK074810 AK225567 AF233396 NM_001193285 NM_016539	-64459	-	TSC_hg19_v1_chr19_+_4247086 AK001236 BC000561 AK023988 NM_018074 AF091080	86	+	AK056268 NM_020209	31593	+	HQ452865 HQ452866 AY358964 BC015655 NM_001169126 NM_144615	55400	-	BC015364|EBI3|10148|Epstein-Barr virus induced 3##L08187|EBI3|10148|Epstein-Barr virus induced 3##NM_005755|EBI3|10148|Epstein-Barr virus induced 3##BC046112|EBI3|10148|Epstein-Barr virus induced 3##DQ891589|EBI3|10148|Epstein-Barr virus induced 3##EU176581|EBI3|10148|Epstein-Barr virus induced 3##NM_133475|ANKRD24|170961|ankyrin repeat domain 24##DQ896358|SIRT6|51548|sirtuin 6##EU176413|SIRT6|51548|sirtuin 6##CR457200|SIRT6|51548|sirtuin 6##BC005026|SIRT6|51548|sirtuin 6##BC004218|SIRT6|51548|sirtuin 6##AK299420|SIRT6|51548|sirtuin 6##BC028220|SIRT6|51548|sirtuin 6##AK293348|SIRT6|51548|sirtuin 6##AK315048|SIRT6|51548|sirtuin 6##AK301247|SIRT6|51548|sirtuin 6##AK074810|SIRT6|51548|sirtuin 6##AK225567|SIRT6|51548|sirtuin 6##AF233396|SIRT6|51548|sirtuin 6##NM_001193285|SIRT6|51548|sirtuin 6##NM_016539|SIRT6|51548|sirtuin 6##AK001236|CCDC94|55702|coiled-coil domain containing 94##BC000561|CCDC94|55702|coiled-coil domain containing 94##AK023988|CCDC94|55702|coiled-coil domain containing 94##NM_018074|CCDC94|55702|coiled-coil domain containing 94##AF091080|CCDC94|55702|coiled-coil domain containing 94##AK056268|SHD|56961|Src homology 2 domain containing transforming protein D##NM_020209|SHD|56961|Src homology 2 domain containing transforming protein D##HQ452865|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##HQ452866|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##AY358964|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##BC015655|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##NM_001169126|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##NM_144615|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2	1.488492	denovo_WM_21:-6:0.902	denovo_WM_21:25:0.587
chr19	4968723	4968907	reg1000079.p1	14.115	+	TSC_hg19_v1_chr19_-_4916833 AK097879	-51987	-	TSC_hg19_v1_chr19_+_4910386 AB177624 EF560733 NM_013282	-58363	+	TSC_hg19_v1_chr19_+_4910185 AK289389	-58637	+	NM_015015 TSC_hg19_v1_chr19_+_4969124	309	+	TSC_hg19_v1_chr19_+_4969167 AB020683 BC063889	358	+	TSC_hg19_v1_chr19_+_5032899 CU687848	64084	+	AB177624|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##EF560733|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##NM_013282|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##AK289389|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##NM_015015|KDM4B|23030|lysine (K)-specific demethylase 4B##AB020683|KDM4B|23030|lysine (K)-specific demethylase 4B##BC063889|KDM4B|23030|lysine (K)-specific demethylase 4B	0.300884	denovo_WM_21:44:0.301
chr19	4472050	4472177	reg1000037.p2	14.113	+	AF272893 NM_025241	-14324	-	AF272894 BC008288 NM_001171091	-16824	-	BC067093 NM_005483 BC052620 TSC_hg19_v1_chr19_+_4402664 BC041606 AB527824 U20979 BC005813 BC011560	-69397	+	TSC_hg19_v1_chr19_+_4472263 NM_001001520 NM_032631 AY358600 AF294267 BC000755 CU674386 DQ892175 DQ895370	234	+	BC009449 TSC_hg19_v1_chr19_+_4488757	16613	+	NM_001080400	45602	-	AF272893|UBXN6|80700|UBX domain protein 6##NM_025241|UBXN6|80700|UBX domain protein 6##AF272894|UBXN6|80700|UBX domain protein 6##BC008288|UBXN6|80700|UBX domain protein 6##NM_001171091|UBXN6|80700|UBX domain protein 6##BC067093|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##NM_005483|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC052620|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC041606|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##U20979|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC005813|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC011560|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##NM_001001520|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##NM_032631|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##AY358600|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##AF294267|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##BC000755|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##DQ892175|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##DQ895370|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##BC009449|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##NM_001080400|PLIN4|729359|perilipin 4	0.979464	denovo_WM_21:-22:0.954
chr19	42901131	42901279	reg1000076.p1	14.061	+	BC101197 BC101198 AB049591 AK312080 NM_032488	-6774	-	AB011541 BC153880 NM_001410 TSC_hg19_v1_chr19_+_42829786	-71419	+	TSC_hg19_v1_chr19_+_42817516 NM_173633 AK075286	-83676	+	TSC_hg19_v1_chr19_+_42901325 AK311181	107	+	TSC_hg19_v1_chr19_-_42928157 BC029301	27008	-	AK309893 AK292482 BC029961 BC070041 NM_005357 U40002	30333	-	BC101197|CNFN|84518|cornifelin##BC101198|CNFN|84518|cornifelin##AB049591|CNFN|84518|cornifelin##AK312080|CNFN|84518|cornifelin##NM_032488|CNFN|84518|cornifelin##AB011541|MEGF8|1954|multiple EGF-like-domains 8##BC153880|MEGF8|1954|multiple EGF-like-domains 8##NM_001410|MEGF8|1954|multiple EGF-like-domains 8##NM_173633|TMEM145|284339|transmembrane protein 145##AK075286|TMEM145|284339|transmembrane protein 145##BC029301|LIPE|3991|lipase, hormone-sensitive##AK292482|LIPE|3991|lipase, hormone-sensitive##BC029961|LIPE|3991|lipase, hormone-sensitive##BC070041|LIPE|3991|lipase, hormone-sensitive##NM_005357|LIPE|3991|lipase, hormone-sensitive##U40002|LIPE|3991|lipase, hormone-sensitive	0.491082	denovo_WM_21:-49:0.475
chr22	40440627	40440763	reg1000061.p2	13.988	+	TSC_hg19_v1_chr22_+_40390935 BC031099 NM_138435	-49751	+	AK303280 AK303657 AK312830 TSC_hg19_v1_chr22_+_40322634 AK303470	-118071	+	TSC_hg19_v1_chr22_+_40297183 AF129476 AF090456 CR456498 Y18051	-143448	+	TSC_hg19_v1_chr22_+_40440774 NM_001024843	214	+	TSC_hg19_v1_chr22_+_40441403 BC028626	737	+	TSC_hg19_v1_chr22_+_40573938 NM_001162501 NM_015088 AK296590 AK294519 AB029016	133304	+	BC031099|FAM83F|113828|family with sequence similarity 83, member F##NM_138435|FAM83F|113828|family with sequence similarity 83, member F##AK303280|GRAP2|9402|GRB2-related adaptor protein 2##AK303657|GRAP2|9402|GRB2-related adaptor protein 2##AK312830|GRAP2|9402|GRB2-related adaptor protein 2##AK303470|GRAP2|9402|GRB2-related adaptor protein 2##AF129476|GRAP2|9402|GRB2-related adaptor protein 2##AF090456|GRAP2|9402|GRB2-related adaptor protein 2##CR456498|GRAP2|9402|GRB2-related adaptor protein 2##Y18051|GRAP2|9402|GRB2-related adaptor protein 2##NM_001024843|TNRC6B|23112|trinucleotide repeat containing 6B##BC028626|TNRC6B|23112|trinucleotide repeat containing 6B##NM_001162501|TNRC6B|23112|trinucleotide repeat containing 6B##NM_015088|TNRC6B|23112|trinucleotide repeat containing 6B##AK296590|TNRC6B|23112|trinucleotide repeat containing 6B##AK294519|TNRC6B|23112|trinucleotide repeat containing 6B##AB029016|TNRC6B|23112|trinucleotide repeat containing 6B	1.10197	denovo_WM_21:-47:0.862
chr19	17377946	17378103	reg1000078.p1	13.914	+	AB026290 AB040046 AK300617 AK096028 BC027910 NM_031941 AK315239 AK292031	-2477	-	AB307712 AB463945 AK298764 HQ692851 TSC_hg19_v1_chr19_-_17356214 BC063018 BC084544 BC002669 NM_005234 AK314961	-21884	-	BC029361 TSC_hg19_v1_chr19_+_17337034 BC038945 AK026362 NM_024578 CU688632	-40990	+	TSC_hg19_v1_chr19_+_17378251 AK308590 AK299493 NM_001033549 NM_014173 AF161491 AK025970 AK301193 BC006244 AL136692 AK225047	181	+	TSC_hg19_v1_chr19_+_17378266 AK000578 BC091491 BC000788	270	+	AK303628 NM_152363	14429	+	AB026290|USHBP1|83878|Usher syndrome 1C binding protein 1##AB040046|USHBP1|83878|Usher syndrome 1C binding protein 1##AK300617|USHBP1|83878|Usher syndrome 1C binding protein 1##AK096028|USHBP1|83878|Usher syndrome 1C binding protein 1##BC027910|USHBP1|83878|Usher syndrome 1C binding protein 1##NM_031941|USHBP1|83878|Usher syndrome 1C binding protein 1##AK315239|USHBP1|83878|Usher syndrome 1C binding protein 1##AK292031|USHBP1|83878|Usher syndrome 1C binding protein 1##AB307712|NR2F6|2063|nuclear receptor subfamily 2, group F, member 6##AK298764|NR2F6|2063|nuclear receptor subfamily 2, group F, member 6##HQ692851|NR2F6|2063|nuclear receptor subfamily 2, group F, member 6##BC063018|NR2F6|2063|nuclear receptor subfamily 2, group F, member 6##BC084544|NR2F6|2063|nuclear receptor subfamily 2, group F, member 6##BC002669|NR2F6|2063|nuclear receptor subfamily 2, group F, member 6##NM_005234|NR2F6|2063|nuclear receptor subfamily 2, group F, member 6##AK314961|NR2F6|2063|nuclear receptor subfamily 2, group F, member 6##BC029361|OCEL1|79629|occludin/ELL domain containing 1##BC038945|OCEL1|79629|occludin/ELL domain containing 1##AK026362|OCEL1|79629|occludin/ELL domain containing 1##NM_024578|OCEL1|79629|occludin/ELL domain containing 1##AK308590|BABAM1|29086|BRISC and BRCA1 A complex member 1##AK299493|BABAM1|29086|BRISC and BRCA1 A complex member 1##NM_001033549|BABAM1|29086|BRISC and BRCA1 A complex member 1##NM_014173|BABAM1|29086|BRISC and BRCA1 A complex member 1##AF161491|BABAM1|29086|BRISC and BRCA1 A complex member 1##AK025970|BABAM1|29086|BRISC and BRCA1 A complex member 1##AK301193|BABAM1|29086|BRISC and BRCA1 A complex member 1##BC006244|BABAM1|29086|BRISC and BRCA1 A complex member 1##AL136692|BABAM1|29086|BRISC and BRCA1 A complex member 1##AK225047|BABAM1|29086|BRISC and BRCA1 A complex member 1##AK000578|BABAM1|29086|BRISC and BRCA1 A complex member 1##BC091491|BABAM1|29086|BRISC and BRCA1 A complex member 1##BC000788|BABAM1|29086|BRISC and BRCA1 A complex member 1##AK303628|ANKLE1|126549|ankyrin repeat and LEM domain containing 1##NM_152363|ANKLE1|126549|ankyrin repeat and LEM domain containing 1	0.935351	denovo_WM_21:21:0.317	denovo_WM_21:53:0.618
chr1	43312112	43312233	reg1000101.p2	13.860	+	AY049028 AF311285 NM_018538 BC099703 BC099707 BC099712 BC099713	-20902	+	TSC_hg19_v1_chr1_-_43283067 NM_199342	-29110	-	TSC_hg19_v1_chr1_-_43282960 BC029427 AK291356	-29222	-	NM_001242739 NM_015911 TSC_hg19_v1_chr1_+_43312254	78	+	TSC_hg19_v1_chr1_+_43312284 AF131739	101	+	AK095184 TSC_hg19_v1_chr1_+_43312290	117	+	AY049028|ERMAP|114625|erythroblast membrane-associated protein (Scianna blood group)##AF311285|ERMAP|114625|erythroblast membrane-associated protein (Scianna blood group)##NM_018538|ERMAP|114625|erythroblast membrane-associated protein (Scianna blood group)##BC099703|ERMAP|114625|erythroblast membrane-associated protein (Scianna blood group)##BC099707|ERMAP|114625|erythroblast membrane-associated protein (Scianna blood group)##BC099712|ERMAP|114625|erythroblast membrane-associated protein (Scianna blood group)##BC099713|ERMAP|114625|erythroblast membrane-associated protein (Scianna blood group)##NM_199342|CCDC23|374969|coiled-coil domain containing 23##BC029427|CCDC23|374969|coiled-coil domain containing 23##AK291356|CCDC23|374969|coiled-coil domain containing 23##NM_001242739|ZNF691|51058|zinc finger protein 691##NM_015911|ZNF691|51058|zinc finger protein 691##AF131739|ZNF691|51058|zinc finger protein 691	0.853474	denovo_WM_21:22:0.839
chr12	53773362	53773546	reg1000012.p1	13.811	+	AY150674 NM_001173467	-43451	-	AB527932 EU446563 BC101549 BC113613 AY150673 AF477981 NM_152860 AF466179	-43971	-	TSC_hg19_v1_chr12_-_53715374 AK293342 BC000659 BC018836 AY237818 NM_001173466 NM_015665	-58077	-	TSC_hg19_v1_chr12_+_53773935 BC062539 NM_001251825 NM_138473 AF255682 AJ272134	536	+	BC043224 NM_003109	970	+	NM_001164690 NM_001164691 NM_020547 AK313593 AF172932 BC126316 BC136356 AY714878 HQ258327	44224	+	AY150674|SP7|121340|Sp7 transcription factor##NM_001173467|SP7|121340|Sp7 transcription factor##EU446563|SP7|121340|Sp7 transcription factor##BC101549|SP7|121340|Sp7 transcription factor##BC113613|SP7|121340|Sp7 transcription factor##AY150673|SP7|121340|Sp7 transcription factor##AF477981|SP7|121340|Sp7 transcription factor##NM_152860|SP7|121340|Sp7 transcription factor##AF466179|SP7|121340|Sp7 transcription factor##AK293342|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##BC000659|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##BC018836|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##AY237818|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##NM_001173466|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##NM_015665|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##BC062539|SP1|6667|Sp1 transcription factor##NM_001251825|SP1|6667|Sp1 transcription factor##NM_138473|SP1|6667|Sp1 transcription factor##AF255682|SP1|6667|Sp1 transcription factor##AJ272134|SP1|6667|Sp1 transcription factor##BC043224|SP1|6667|Sp1 transcription factor##NM_003109|SP1|6667|Sp1 transcription factor##NM_001164690|AMHR2|269|anti-Mullerian hormone receptor, type II##NM_001164691|AMHR2|269|anti-Mullerian hormone receptor, type II##NM_020547|AMHR2|269|anti-Mullerian hormone receptor, type II##AK313593|AMHR2|269|anti-Mullerian hormone receptor, type II##AF172932|AMHR2|269|anti-Mullerian hormone receptor, type II##BC126316|AMHR2|269|anti-Mullerian hormone receptor, type II##BC136356|AMHR2|269|anti-Mullerian hormone receptor, type II##AY714878|AMHR2|269|anti-Mullerian hormone receptor, type II##HQ258327|AMHR2|269|anti-Mullerian hormone receptor, type II	1.743833	denovo_WM_21:66:0.989	denovo_WM_21:-104:0.740
chr22	38054356	38054512	reg1000071.p1	13.807	+	TSC_hg19_v1_chr22_+_38035718 CR456576 AB463257 CU013175 CU013463	-18675	+	TSC_hg19_v1_chr22_+_38035696 AK301163	-18730	+	NM_018957 TSC_hg19_v1_chr22_+_38035684	-18750	+	TSC_hg19_v1_chr22_+_38054751 BC064922 NM_020315 BC000320 BC018844 AY125047	311	+	CR456511 NM_002305 EU363770 AK312161 BC020675 TSC_hg19_v1_chr22_+_38071644 AL832117 D28452 BC001693 AB097036 J04456 X15256 X14829	17223	+	TSC_hg19_v1_chr22_+_38082360 NM_024313 AK057139 AK294700 AK316443 BC002808 AK310084 AL160132 CR456463 AB528193 CU012996 CU013284 DQ278603	27941	+	CR456576|SH3BP1|23616|SH3-domain binding protein 1##CU013175|SH3BP1|23616|SH3-domain binding protein 1##CU013463|SH3BP1|23616|SH3-domain binding protein 1##AK301163|SH3BP1|23616|SH3-domain binding protein 1##NM_018957|SH3BP1|23616|SH3-domain binding protein 1##BC064922|PDXP|57026|pyridoxal (pyridoxine, vitamin B6) phosphatase##NM_020315|PDXP|57026|pyridoxal (pyridoxine, vitamin B6) phosphatase##BC000320|PDXP|57026|pyridoxal (pyridoxine, vitamin B6) phosphatase##BC018844|PDXP|57026|pyridoxal (pyridoxine, vitamin B6) phosphatase##AY125047|PDXP|57026|pyridoxal (pyridoxine, vitamin B6) phosphatase##CR456511|LGALS1|3956|lectin, galactoside-binding, soluble, 1##NM_002305|LGALS1|3956|lectin, galactoside-binding, soluble, 1##EU363770|LGALS1|3956|lectin, galactoside-binding, soluble, 1##AK312161|LGALS1|3956|lectin, galactoside-binding, soluble, 1##BC020675|LGALS1|3956|lectin, galactoside-binding, soluble, 1##AL832117|LGALS1|3956|lectin, galactoside-binding, soluble, 1##D28452|LGALS1|3956|lectin, galactoside-binding, soluble, 1##BC001693|LGALS1|3956|lectin, galactoside-binding, soluble, 1##AB097036|LGALS1|3956|lectin, galactoside-binding, soluble, 1##J04456|LGALS1|3956|lectin, galactoside-binding, soluble, 1##X15256|LGALS1|3956|lectin, galactoside-binding, soluble, 1##X14829|LGALS1|3956|lectin, galactoside-binding, soluble, 1##NM_024313|NOL12|79159|nucleolar protein 12##AK057139|NOL12|79159|nucleolar protein 12##AK294700|NOL12|79159|nucleolar protein 12##AK316443|NOL12|79159|nucleolar protein 12##BC002808|NOL12|79159|nucleolar protein 12##AL160132|NOL12|79159|nucleolar protein 12##CR456463|NOL12|79159|nucleolar protein 12	1.969386	denovo_WM_21:7:0.977	denovo_WM_21:-44:0.993
chr1	6845206	6845359	reg1000021.p1	13.783	+	TSC_hg19_v1_chr1_-_6761903 NM_018198	-83351	-	AF306695 TSC_hg19_v1_chr1_-_6761883	-83400	-	AL833841 BC008772 TSC_hg19_v1_chr1_-_6761875 CU675235 CU680804 BC006086 AK294539 AF306694 AK001599 BC014145 AY336749	-83425	-	TSC_hg19_v1_chr1_+_6845513 AB020640 BC151835 NM_001195563 NM_001242701 NM_015215 BC116457	209	+	TSC_hg19_v1_chr1_+_7831355 BC005941 NM_004781 AK316558 BC007050 BC003570 U64520	986094	+	BC026102 TSC_hg19_v1_chr1_+_7844403 AK308303	999127	+	NM_018198|DNAJC11|55735|DnaJ (Hsp40) homolog, subfamily C, member 11##AF306695|DNAJC11|55735|DnaJ (Hsp40) homolog, subfamily C, member 11##AL833841|DNAJC11|55735|DnaJ (Hsp40) homolog, subfamily C, member 11##BC008772|DNAJC11|55735|DnaJ (Hsp40) homolog, subfamily C, member 11##BC006086|DNAJC11|55735|DnaJ (Hsp40) homolog, subfamily C, member 11##AK294539|DNAJC11|55735|DnaJ (Hsp40) homolog, subfamily C, member 11##AF306694|DNAJC11|55735|DnaJ (Hsp40) homolog, subfamily C, member 11##AK001599|DNAJC11|55735|DnaJ (Hsp40) homolog, subfamily C, member 11##BC014145|DNAJC11|55735|DnaJ (Hsp40) homolog, subfamily C, member 11##AY336749|DNAJC11|55735|DnaJ (Hsp40) homolog, subfamily C, member 11##AB020640|CAMTA1|23261|calmodulin binding transcription activator 1##BC151835|CAMTA1|23261|calmodulin binding transcription activator 1##NM_001195563|CAMTA1|23261|calmodulin binding transcription activator 1##NM_001242701|CAMTA1|23261|calmodulin binding transcription activator 1##NM_015215|CAMTA1|23261|calmodulin binding transcription activator 1##BC116457|CAMTA1|23261|calmodulin binding transcription activator 1##BC005941|VAMP3|9341|vesicle-associated membrane protein 3 (cellubrevin)##NM_004781|VAMP3|9341|vesicle-associated membrane protein 3 (cellubrevin)##AK316558|VAMP3|9341|vesicle-associated membrane protein 3 (cellubrevin)##BC007050|VAMP3|9341|vesicle-associated membrane protein 3 (cellubrevin)##BC003570|VAMP3|9341|vesicle-associated membrane protein 3 (cellubrevin)##U64520|VAMP3|9341|vesicle-associated membrane protein 3 (cellubrevin)##BC026102|PER3|8863|period homolog 3 (Drosophila)##AK308303|PER3|8863|period homolog 3 (Drosophila)	0.799182	denovo_WM_21:-49:0.705
chr1	6052577	6052705	reg1000066.p1	13.778	+	TSC_hg19_v1_chr1_-_6052507 AK124074 AK314326 AF537130 BC040520 NM_015102	-132	-	TSC_hg19_v1_chr1_-_6052456 AY118228	-196	-	NM_001199861	-284	+	TSC_hg19_v1_chr1_+_6052753 AK289819	85	+	TSC_hg19_v1_chr1_+_6052760 AK315811 AK290044 AK312395	140	+	NM_003636 NM_172130	33431	+	AK124074|NPHP4|261734|nephronophthisis 4##AK314326|NPHP4|261734|nephronophthisis 4##AF537130|NPHP4|261734|nephronophthisis 4##BC040520|NPHP4|261734|nephronophthisis 4##NM_015102|NPHP4|261734|nephronophthisis 4##AY118228|NPHP4|261734|nephronophthisis 4##NM_001199861|KCNAB2|8514|potassium voltage-gated channel, shaker-related subfamily, beta member 2##AK289819|KCNAB2|8514|potassium voltage-gated channel, shaker-related subfamily, beta member 2##AK315811|KCNAB2|8514|potassium voltage-gated channel, shaker-related subfamily, beta member 2##AK290044|KCNAB2|8514|potassium voltage-gated channel, shaker-related subfamily, beta member 2##AK312395|KCNAB2|8514|potassium voltage-gated channel, shaker-related subfamily, beta member 2##NM_003636|KCNAB2|8514|potassium voltage-gated channel, shaker-related subfamily, beta member 2##NM_172130|KCNAB2|8514|potassium voltage-gated channel, shaker-related subfamily, beta member 2	2.998216	denovo_WM_21:15:0.256	denovo_WM_21:-38:0.755	denovo_WM_21:46:0.993	denovo_WM_21:-81:0.994
chr1	151254512	151254677	reg1000085.p1	13.713	+	TSC_hg19_v1_chr1_+_151254004 CR749307	-552	+	TSC_hg19_v1_chr1_+_151227240 AB033605 BC002365 AB527552	-27347	+	TSC_hg19_v1_chr1_+_151227209 BC072008	-27373	+	TSC_hg19_v1_chr1_+_151254774 AB037862 BC032463 NM_020832	179	+	TSC_hg19_v1_chr1_-_151299858 BC000029 AK294606	45256	-	AK311292 NM_001198773 NM_001198775 NM_002651 TSC_hg19_v1_chr1_-_151300134	45555	-	CR749307|ZNF687|57592|zinc finger protein 687##AB033605|PSMD4|5710|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4##BC002365|PSMD4|5710|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4##BC072008|PSMD4|5710|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4##AB037862|ZNF687|57592|zinc finger protein 687##BC032463|ZNF687|57592|zinc finger protein 687##NM_020832|ZNF687|57592|zinc finger protein 687##BC000029|PI4KB|5298|phosphatidylinositol 4-kinase, catalytic, beta##AK294606|PI4KB|5298|phosphatidylinositol 4-kinase, catalytic, beta##AK311292|PI4KB|5298|phosphatidylinositol 4-kinase, catalytic, beta##NM_001198773|PI4KB|5298|phosphatidylinositol 4-kinase, catalytic, beta##NM_001198775|PI4KB|5298|phosphatidylinositol 4-kinase, catalytic, beta##NM_002651|PI4KB|5298|phosphatidylinositol 4-kinase, catalytic, beta	0.983919	denovo_WM_21:-47:0.781
chr9	37465687	37465872	reg1000059.p2	13.679	+	TSC_hg19_v1_chr9_-_37465448 AK292404	-338	-	TSC_hg19_v1_chr9_-_37465398 AB002352 NM_014872	-384	-	BC010007 TSC_hg19_v1_chr9_-_37465267	-519	-	TSC_hg19_v1_chr9_+_37485944 BC014331 AK023452 AK302345 AK303167 NM_022490 AK301347 AK024032 AK225050 BC017766 BC001337 CR457313 AK091294 AX746899	20251	+	AF174598 AF176705 NM_012166 TSC_hg19_v1_chr9_-_37576280	110486	-	CR627326 AB435233 TSC_hg19_v1_chr9_-_37592574 BC034247	126740	-	AK292404|ZBTB5|9925|zinc finger and BTB domain containing 5##AB002352|ZBTB5|9925|zinc finger and BTB domain containing 5##NM_014872|ZBTB5|9925|zinc finger and BTB domain containing 5##BC010007|ZBTB5|9925|zinc finger and BTB domain containing 5##BC014331|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK023452|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK302345|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK303167|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##NM_022490|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK301347|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK024032|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK225050|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##BC017766|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##BC001337|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##CR457313|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK091294|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AF174598|FBXO10|26267|F-box protein 10##AF176705|FBXO10|26267|F-box protein 10##NM_012166|FBXO10|26267|F-box protein 10##AB435233|TOMM5|401505|translocase of outer mitochondrial membrane 5 homolog (yeast)##BC034247|TOMM5|401505|translocase of outer mitochondrial membrane 5 homolog (yeast)	1.204729	denovo_WM_21:-3:0.939	denovo_WM_21:47:0.266
chr19	18315084	18315200	reg1000090.p2	13.672	+	M28210 TSC_hg19_v1_chr19_-_18314858 AF254795 BC011782 AK293467 AK289559 NM_002866	-338	-	TSC_hg19_v1_chr19_+_18304077 NM_032683 BC093008 BC005064 BC028146 AF320622 AF416712 AK094091	-11107	+	TSC_hg19_v1_chr19_+_18284633 AB590284 CU676848 CU689078 DQ884410 DQ892016 DQ895206	-30501	+	NM_001098819 U88712	20160	-	AK300888 AK300983 TSC_hg19_v1_chr19_-_18337249 NM_001098818 U88713	22117	-	NM_000923 U66346	43867	-	M28210|RAB3A|5864|RAB3A, member RAS oncogene family##AF254795|RAB3A|5864|RAB3A, member RAS oncogene family##BC011782|RAB3A|5864|RAB3A, member RAS oncogene family##AK293467|RAB3A|5864|RAB3A, member RAS oncogene family##AK289559|RAB3A|5864|RAB3A, member RAS oncogene family##NM_002866|RAB3A|5864|RAB3A, member RAS oncogene family##NM_032683|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##BC093008|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##BC005064|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##BC028146|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##AF320622|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##AF416712|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##AK094091|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##DQ884410|IFI30|10437|interferon, gamma-inducible protein 30##DQ892016|IFI30|10437|interferon, gamma-inducible protein 30##DQ895206|IFI30|10437|interferon, gamma-inducible protein 30##NM_001098819|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##U88712|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##AK300888|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##AK300983|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##NM_001098818|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##U88713|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##NM_000923|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##U66346|PDE4C|5143|phosphodiesterase 4C, cAMP-specific	1.146643	denovo_WM_21:-2:0.994
chr2	73460425	73460544	reg1000081.p1	13.656	+	TSC_hg19_v1_chr2_-_73460365 AY358605 BC005069 NM_032319 AK312077	-120	-	TSC_hg19_v1_chr2_+_73441372 NM_006062 AK300779 AK301809 BC073806 AB527925 U50383	-19079	+	AK295936 NM_001134462 AK316410	-31077	+	NM_001009570 NM_001166284 NM_001166285 NM_006429 BC088351 TSC_hg19_v1_chr2_+_73461435 AK291961 AK293597 AK297846 AK298153 AK302078	915	+	TSC_hg19_v1_chr2_+_73461445 AK098549 AK293175	959	+	TSC_hg19_v1_chr2_+_73461452 AF026292 BC019296	966	+	AY358605|PRADC1|84279|protease-associated domain containing 1##BC005069|PRADC1|84279|protease-associated domain containing 1##NM_032319|PRADC1|84279|protease-associated domain containing 1##AK312077|PRADC1|84279|protease-associated domain containing 1##NM_006062|SMYD5|10322|SMYD family member 5##AK300779|SMYD5|10322|SMYD family member 5##AK301809|SMYD5|10322|SMYD family member 5##BC073806|SMYD5|10322|SMYD family member 5##U50383|SMYD5|10322|SMYD family member 5##AK295936|NOTO|344022|notochord homeobox##NM_001134462|NOTO|344022|notochord homeobox##AK316410|NOTO|344022|notochord homeobox##NM_001009570|CCT7|10574|chaperonin containing TCP1, subunit 7 (eta)##NM_001166284|CCT7|10574|chaperonin containing TCP1, subunit 7 (eta)##NM_001166285|CCT7|10574|chaperonin containing TCP1, subunit 7 (eta)##NM_006429|CCT7|10574|chaperonin containing TCP1, subunit 7 (eta)##BC088351|CCT7|10574|chaperonin containing TCP1, subunit 7 (eta)##AK291961|CCT7|10574|chaperonin containing TCP1, subunit 7 (eta)##AK293597|CCT7|10574|chaperonin containing TCP1, subunit 7 (eta)##AK297846|CCT7|10574|chaperonin containing TCP1, subunit 7 (eta)##AK298153|CCT7|10574|chaperonin containing TCP1, subunit 7 (eta)##AK302078|CCT7|10574|chaperonin containing TCP1, subunit 7 (eta)##AK098549|CCT7|10574|chaperonin containing TCP1, subunit 7 (eta)##AK293175|CCT7|10574|chaperonin containing TCP1, subunit 7 (eta)##AF026292|CCT7|10574|chaperonin containing TCP1, subunit 7 (eta)##BC019296|CCT7|10574|chaperonin containing TCP1, subunit 7 (eta)	1.093392	denovo_WM_21:18:0.898
chr12	14927151	14927276	reg1000094.p1	13.555	+	AB527963 TSC_hg19_v1_chr12_-_14924064 AK311916 BC020884 NM_175054	-3172	-	BC136544 BC136545 M73489 TSC_hg19_v1_chr12_-_14849534 S57551 AK310034 NM_004963	-77728	-	NM_024829 TSC_hg19_v1_chr12_-_14720806	-206409	-	NM_177925 TSC_hg19_v1_chr12_+_14927302	72	+	TSC_hg19_v1_chr12_+_14927338 AK001765 AK303301 BC003602 CU678528 AL133626	197	+	AF118023 TSC_hg19_v1_chr12_-_14956333	29113	-	BC020884|HIST4H4|121504|histone cluster 4, H4##NM_175054|HIST4H4|121504|histone cluster 4, H4##BC136544|GUCY2C|2984|guanylate cyclase 2C (heat stable enterotoxin receptor)##BC136545|GUCY2C|2984|guanylate cyclase 2C (heat stable enterotoxin receptor)##M73489|GUCY2C|2984|guanylate cyclase 2C (heat stable enterotoxin receptor)##S57551|GUCY2C|2984|guanylate cyclase 2C (heat stable enterotoxin receptor)##AK310034|GUCY2C|2984|guanylate cyclase 2C (heat stable enterotoxin receptor)##NM_004963|GUCY2C|2984|guanylate cyclase 2C (heat stable enterotoxin receptor)##NM_024829|PLBD1|79887|phospholipase B domain containing 1##NM_177925|H2AFJ|55766|H2A histone family, member J##AK001765|H2AFJ|55766|H2A histone family, member J##AK303301|H2AFJ|55766|H2A histone family, member J##BC003602|H2AFJ|55766|H2A histone family, member J##AL133626|H2AFJ|55766|H2A histone family, member J##AF118023|WBP11|51729|WW domain binding protein 11	1.602474	denovo_WM_21:47:0.763	denovo_WM_21:64:0.839
chr19	18303745	18303929	reg1000073.p2	13.514	+	TSC_hg19_v1_chr19_+_18284633 AB590284 CU676848 CU689078 DQ884410 DQ892016 DQ895206	-19196	+	TSC_hg19_v1_chr19_+_18284622 BC021136 BC031020 AF097362	-19216	+	NM_006332 TSC_hg19_v1_chr19_+_18284600 AB049659 AK291551	-19246	+	TSC_hg19_v1_chr19_+_18304077 NM_032683 BC093008 BC005064 BC028146 AF320622 AF416712 AK094091	198	+	M28210 TSC_hg19_v1_chr19_-_18314858 AF254795 BC011782 AK293467 AK289559 NM_002866	10967	-	NM_001098819 U88712	31465	-	DQ884410|IFI30|10437|interferon, gamma-inducible protein 30##DQ892016|IFI30|10437|interferon, gamma-inducible protein 30##DQ895206|IFI30|10437|interferon, gamma-inducible protein 30##BC021136|IFI30|10437|interferon, gamma-inducible protein 30##BC031020|IFI30|10437|interferon, gamma-inducible protein 30##NM_006332|IFI30|10437|interferon, gamma-inducible protein 30##AB049659|IFI30|10437|interferon, gamma-inducible protein 30##AK291551|IFI30|10437|interferon, gamma-inducible protein 30##NM_032683|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##BC093008|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##BC005064|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##BC028146|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##AF320622|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##AF416712|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##AK094091|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##M28210|RAB3A|5864|RAB3A, member RAS oncogene family##AF254795|RAB3A|5864|RAB3A, member RAS oncogene family##BC011782|RAB3A|5864|RAB3A, member RAS oncogene family##AK293467|RAB3A|5864|RAB3A, member RAS oncogene family##AK289559|RAB3A|5864|RAB3A, member RAS oncogene family##NM_002866|RAB3A|5864|RAB3A, member RAS oncogene family##NM_001098819|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##U88712|PDE4C|5143|phosphodiesterase 4C, cAMP-specific	1.936848	denovo_WM_21:-21:0.949	denovo_WM_21:41:0.812
chr19	19174380	19174540	reg1000015.p1	13.485	+	BC067125 TSC_hg19_v1_chr19_+_19144690	-29800	+	TSC_hg19_v1_chr19_+_19144524 BC056161	-29913	+	TSC_hg19_v1_chr19_+_19144418 NM_001199196 NM_033415 BC010051 AK303914 BX648486	-30030	+	TSC_hg19_v1_chr19_+_19174802 NM_178526 BC045598 FN356975	349	+	TSC_hg19_v1_chr19_-_19249264 AK225424 AK000429 NM_017814	74794	-	TSC_hg19_v1_chr19_-_19249268 BC005210 AK096964	74815	-	BC067125|ARMC6|93436|armadillo repeat containing 6##BC056161|ARMC6|93436|armadillo repeat containing 6##NM_001199196|ARMC6|93436|armadillo repeat containing 6##NM_033415|ARMC6|93436|armadillo repeat containing 6##AK303914|ARMC6|93436|armadillo repeat containing 6##BX648486|ARMC6|93436|armadillo repeat containing 6##NM_178526|SLC25A42|284439|solute carrier family 25, member 42##BC045598|SLC25A42|284439|solute carrier family 25, member 42##FN356975|SLC25A42|284439|solute carrier family 25, member 42##AK225424|TMEM161A|54929|transmembrane protein 161A##AK000429|TMEM161A|54929|transmembrane protein 161A##NM_017814|TMEM161A|54929|transmembrane protein 161A##BC005210|TMEM161A|54929|transmembrane protein 161A##AK096964|TMEM161A|54929|transmembrane protein 161A	0.177333	
chr9	131843085	131843265	reg1000031.p1	13.474	+	AK303036 BC009114 NM_032809	-43943	+	TSC_hg19_v1_chr9_+_131798900 AK074127 AK075421 AK301241	-44245	+	EU832345 EU832430 TSC_hg19_v1_chr9_-_131790591 AF257319 AF258589 AB058751 BC014635 NM_020145	-52643	-	TSC_hg19_v1_chr9_+_131843403 AY189675 AK290713 NM_001135917 NM_020438 BC067858 AK293627 BC033686 BC022553 BC009493 BC040152	220	+	TSC_hg19_v1_chr9_+_131870105 DQ655950 DQ655951	26954	+	X78706 TSC_hg19_v1_chr9_-_131872824 BT006801 CU674362	29629	-	AK303036|FAM73B|84895|family with sequence similarity 73, member B##BC009114|FAM73B|84895|family with sequence similarity 73, member B##NM_032809|FAM73B|84895|family with sequence similarity 73, member B##AK074127|FAM73B|84895|family with sequence similarity 73, member B##AK075421|FAM73B|84895|family with sequence similarity 73, member B##AK301241|FAM73B|84895|family with sequence similarity 73, member B##EU832345|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##EU832430|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##AF257319|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##AF258589|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##AB058751|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##BC014635|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##NM_020145|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##AY189675|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##AK290713|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##NM_001135917|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##NM_020438|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##BC067858|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##AK293627|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##BC033686|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##BC022553|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##BC009493|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##BC040152|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##X78706|CRAT|1384|carnitine O-acetyltransferase##BT006801|CRAT|1384|carnitine O-acetyltransferase	2.398745	denovo_WM_21:-11:0.988	denovo_WM_21:-59:0.993	denovo_WM_21:71:0.329
chr2	71454254	71454403	reg1000115.p1	13.449	+	TSC_hg19_v1_chr2_-_71454205 AB032981 NM_020459	-98	-	TSC_hg19_v1_chr2_+_71357768 AK310931 BC041084 X98494	-96543	+	TSC_hg19_v1_chr2_+_71357454 AK056862 NM_005791 BC126389	-96839	+	TSC_hg19_v1_chr2_+_71503722 AK303723 AK309221 AK293938	49398	+	TSC_hg19_v1_chr2_+_71558911 NM_001014972 NM_001252612 NM_001252613 NM_014497 CR749322 D83032 BC010355 BX537425 AK291198 BC024000 BC143728 BC083513	104569	+	NM_001130976 NM_001130977 NM_001130978 NM_001130979 NM_001130980 NM_001130981 NM_003494 AF075575 BC171803 EU515155 EU515156 EU515157 EU515158 EU515159 EU515160	226473	+	AB032981|PAIP2B|400961|poly(A) binding protein interacting protein 2B##NM_020459|PAIP2B|400961|poly(A) binding protein interacting protein 2B##AK310931|MPHOSPH10|10199|M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)##BC041084|MPHOSPH10|10199|M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)##X98494|MPHOSPH10|10199|M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)##AK056862|MPHOSPH10|10199|M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)##NM_005791|MPHOSPH10|10199|M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)##BC126389|MPHOSPH10|10199|M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)##AK303723|ZNF638|27332|zinc finger protein 638##AK309221|ZNF638|27332|zinc finger protein 638##AK293938|ZNF638|27332|zinc finger protein 638##NM_001014972|ZNF638|27332|zinc finger protein 638##NM_001252612|ZNF638|27332|zinc finger protein 638##NM_001252613|ZNF638|27332|zinc finger protein 638##NM_014497|ZNF638|27332|zinc finger protein 638##CR749322|ZNF638|27332|zinc finger protein 638##D83032|ZNF638|27332|zinc finger protein 638##BC010355|ZNF638|27332|zinc finger protein 638##BX537425|ZNF638|27332|zinc finger protein 638##AK291198|ZNF638|27332|zinc finger protein 638##BC024000|ZNF638|27332|zinc finger protein 638##BC143728|ZNF638|27332|zinc finger protein 638##BC083513|ZNF638|27332|zinc finger protein 638##NM_001130976|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130977|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130978|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130979|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130980|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130981|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_003494|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##AF075575|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##BC171803|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515155|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515156|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515157|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515158|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515159|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515160|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)	1.774879	denovo_WM_21:19:0.786	denovo_WM_21:74:0.989
chr22	35696129	35696255	reg1000121.p1	13.410	+	TSC_hg19_v1_chr22_+_35695886 AK097066 AK297827 AK295918 AK296670 AK314522 AK097926 CR456595 BC005144 BC040006 BC046151 AB463301 CU013195 CU013483 CU692314	-296	+	TSC_hg19_v1_chr22_+_35695855 NM_001135730 NM_001135732 NM_005488 AK026576 AJ006973 AY358980	-361	+	AK293694 NM_001135729	-925	+	CR456505 NM_002133 TSC_hg19_v1_chr22_+_35777085 X06985	80876	+	TSC_hg19_v1_chr22_+_35777088 AK313120 BC001491 M23041 AB528477 BT019785 CR541945 CR541968 CU013103 CU013391 DQ892310 DQ895510 JF323038	80934	+	AF051791 TSC_hg19_v1_chr22_+_35779219	82970	+	AK097066|TOM1|10043|target of myb1 (chicken)##AK297827|TOM1|10043|target of myb1 (chicken)##AK295918|TOM1|10043|target of myb1 (chicken)##AK296670|TOM1|10043|target of myb1 (chicken)##AK314522|TOM1|10043|target of myb1 (chicken)##AK097926|TOM1|10043|target of myb1 (chicken)##CR456595|TOM1|10043|target of myb1 (chicken)##BC040006|TOM1|10043|target of myb1 (chicken)##BC046151|TOM1|10043|target of myb1 (chicken)##CU013195|TOM1|10043|target of myb1 (chicken)##CU013483|TOM1|10043|target of myb1 (chicken)##NM_001135730|TOM1|10043|target of myb1 (chicken)##NM_001135732|TOM1|10043|target of myb1 (chicken)##NM_005488|TOM1|10043|target of myb1 (chicken)##AK026576|TOM1|10043|target of myb1 (chicken)##AJ006973|TOM1|10043|target of myb1 (chicken)##AY358980|TOM1|10043|target of myb1 (chicken)##AK293694|TOM1|10043|target of myb1 (chicken)##NM_001135729|TOM1|10043|target of myb1 (chicken)##CR456505|HMOX1|3162|heme oxygenase (decycling) 1##NM_002133|HMOX1|3162|heme oxygenase (decycling) 1##X06985|HMOX1|3162|heme oxygenase (decycling) 1##AK313120|HMOX1|3162|heme oxygenase (decycling) 1##BC001491|HMOX1|3162|heme oxygenase (decycling) 1##M23041|HMOX1|3162|heme oxygenase (decycling) 1##BT019785|HMOX1|3162|heme oxygenase (decycling) 1##CR541945|HMOX1|3162|heme oxygenase (decycling) 1##CR541968|HMOX1|3162|heme oxygenase (decycling) 1##CU013103|HMOX1|3162|heme oxygenase (decycling) 1##CU013391|HMOX1|3162|heme oxygenase (decycling) 1##DQ892310|HMOX1|3162|heme oxygenase (decycling) 1##DQ895510|HMOX1|3162|heme oxygenase (decycling) 1##JF323038|HMOX1|3162|heme oxygenase (decycling) 1##AF051791|HMOX1|3162|heme oxygenase (decycling) 1	0.066524	
chr19	33462937	33463061	reg1000057.p1	13.401	+	BC029978 TSC_hg19_v1_chr19_-_33462855 AK001375 BC136328 AL832158 BC032307 NM_032816	-156	-	BC029802 AF141289 AB033548 AK026446 AK223147 AK313708 BC017962 NM_001126335 NM_001243036 NM_014270	-102338	-	NM_001110822 BC049000	-252320	+	AK309396 NM_152266 AK128668 BC020247 BC010170 BC003535	171	+	AF423421 AJ347750 DQ892111 DQ895305 TSC_hg19_v1_chr19_-_33555795 AF268032 AK098246 AK300775 AK315105 BC036447 NM_033103	92791	-	BC006108 NM_018025	108786	+	BC029978|CEP89|84902|centrosomal protein 89kDa##BC136328|CEP89|84902|centrosomal protein 89kDa##AL832158|CEP89|84902|centrosomal protein 89kDa##BC032307|CEP89|84902|centrosomal protein 89kDa##NM_032816|CEP89|84902|centrosomal protein 89kDa##BC029802|SLC7A9|11136|solute carrier family 7 (glycoprotein-associated amino acid transporter light chain, bo,+ system), member 9##AF141289|SLC7A9|11136|solute carrier family 7 (glycoprotein-associated amino acid transporter light chain, bo,+ system), member 9##AB033548|SLC7A9|11136|solute carrier family 7 (glycoprotein-associated amino acid transporter light chain, bo,+ system), member 9##AK026446|SLC7A9|11136|solute carrier family 7 (glycoprotein-associated amino acid transporter light chain, bo,+ system), member 9##AK223147|SLC7A9|11136|solute carrier family 7 (glycoprotein-associated amino acid transporter light chain, bo,+ system), member 9##AK313708|SLC7A9|11136|solute carrier family 7 (glycoprotein-associated amino acid transporter light chain, bo,+ system), member 9##BC017962|SLC7A9|11136|solute carrier family 7 (glycoprotein-associated amino acid transporter light chain, bo,+ system), member 9##NM_001126335|SLC7A9|11136|solute carrier family 7 (glycoprotein-associated amino acid transporter light chain, bo,+ system), member 9##NM_001243036|SLC7A9|11136|solute carrier family 7 (glycoprotein-associated amino acid transporter light chain, bo,+ system), member 9##NM_014270|SLC7A9|11136|solute carrier family 7 (glycoprotein-associated amino acid transporter light chain, bo,+ system), member 9##NM_001110822|TDRD12|91646|tudor domain containing 12##BC049000|TDRD12|91646|tudor domain containing 12##NM_152266|C19orf40|91442|chromosome 19 open reading frame 40##AK128668|C19orf40|91442|chromosome 19 open reading frame 40##BC020247|C19orf40|91442|chromosome 19 open reading frame 40##BC010170|C19orf40|91442|chromosome 19 open reading frame 40##BC003535|C19orf40|91442|chromosome 19 open reading frame 40##AF423421|RHPN2|85415|rhophilin, Rho GTPase binding protein 2##AJ347750|RHPN2|85415|rhophilin, Rho GTPase binding protein 2##DQ892111|RHPN2|85415|rhophilin, Rho GTPase binding protein 2##DQ895305|RHPN2|85415|rhophilin, Rho GTPase binding protein 2##AF268032|RHPN2|85415|rhophilin, Rho GTPase binding protein 2##AK098246|RHPN2|85415|rhophilin, Rho GTPase binding protein 2##AK300775|RHPN2|85415|rhophilin, Rho GTPase binding protein 2##AK315105|RHPN2|85415|rhophilin, Rho GTPase binding protein 2##BC036447|RHPN2|85415|rhophilin, Rho GTPase binding protein 2##NM_033103|RHPN2|85415|rhophilin, Rho GTPase binding protein 2##BC006108|GPATCH1|55094|G patch domain containing 1##NM_018025|GPATCH1|55094|G patch domain containing 1	2.367942	denovo_WM_21:-50:0.981	denovo_WM_21:50:0.961	denovo_WM_21:-75:0.426
chr7	27702580	27702717	reg1000107.p1	13.399	+	TSC_hg19_v1_chr7_-_27702556 AK311650 NM_152740	-71	-	TSC_hg19_v1_chr7_-_27702469 AF529362 DQ894677 AK316605 BC020167 AB050000 BC032324	-220	-	AK299188 NM_001989	-420485	+	AK299729 NM_001206901	76343	+	TSC_hg19_v1_chr7_+_27779734 NM_001079864 NM_001206902 NM_006024	77076	+	AK314292 TSC_hg19_v1_chr7_+_27779787 AK296720 BC024600 AK301064 AF090891 AK000098 AL136586	77127	+	NM_152740|HIBADH|11112|3-hydroxyisobutyrate dehydrogenase##AF529362|HIBADH|11112|3-hydroxyisobutyrate dehydrogenase##DQ894677|HIBADH|11112|3-hydroxyisobutyrate dehydrogenase##AK316605|HIBADH|11112|3-hydroxyisobutyrate dehydrogenase##BC020167|HIBADH|11112|3-hydroxyisobutyrate dehydrogenase##AB050000|HIBADH|11112|3-hydroxyisobutyrate dehydrogenase##BC032324|HIBADH|11112|3-hydroxyisobutyrate dehydrogenase##AK299188|EVX1|2128|even-skipped homeobox 1##NM_001989|EVX1|2128|even-skipped homeobox 1##AK299729|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##NM_001206901|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##NM_001079864|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##NM_001206902|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##NM_006024|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK314292|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK296720|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##BC024600|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK301064|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AF090891|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK000098|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AL136586|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1	1.938454	denovo_WM_21:-8:0.978	denovo_WM_21:28:0.961
chr5	145826719	145826864	reg1000099.p2	13.349	+	BC104923 BC112207 NM_002700 AB464668 EU446649 HQ258176	-108161	+	TSC_hg19_v1_chr5_+_145583167 BC009537 BX647384 NM_018989 BC029648	-243625	+	AK128738 TSC_hg19_v1_chr5_+_145583122	-243674	+	TSC_hg19_v1_chr5_+_145826895 NM_001040006 NM_006706 AK304319 BC006109 BC014151 BC062351 AK126455 BC111727 AB209910 AB464301 AF017789	103	+	AB463658 AY351676 NM_194251 AK122627	68922	-	CU689232 DQ891785 DQ894969 TSC_hg19_v1_chr5_-_146257712	430883	-	BC104923|POU4F3|5459|POU class 4 homeobox 3##BC112207|POU4F3|5459|POU class 4 homeobox 3##NM_002700|POU4F3|5459|POU class 4 homeobox 3##EU446649|POU4F3|5459|POU class 4 homeobox 3##HQ258176|POU4F3|5459|POU class 4 homeobox 3##BC009537|RBM27|54439|RNA binding motif protein 27##BX647384|RBM27|54439|RNA binding motif protein 27##NM_018989|RBM27|54439|RNA binding motif protein 27##BC029648|RBM27|54439|RNA binding motif protein 27##AK128738|RBM27|54439|RNA binding motif protein 27##NM_001040006|TCERG1|10915|transcription elongation regulator 1##NM_006706|TCERG1|10915|transcription elongation regulator 1##AK304319|TCERG1|10915|transcription elongation regulator 1##BC006109|TCERG1|10915|transcription elongation regulator 1##BC014151|TCERG1|10915|transcription elongation regulator 1##BC062351|TCERG1|10915|transcription elongation regulator 1##AK126455|TCERG1|10915|transcription elongation regulator 1##BC111727|TCERG1|10915|transcription elongation regulator 1##AB209910|TCERG1|10915|transcription elongation regulator 1##AF017789|TCERG1|10915|transcription elongation regulator 1##AY351676|GPR151|134391|G protein-coupled receptor 151##NM_194251|GPR151|134391|G protein-coupled receptor 151##DQ891785|PPP2R2B|5521|protein phosphatase 2, regulatory subunit B, beta##DQ894969|PPP2R2B|5521|protein phosphatase 2, regulatory subunit B, beta	0.970202	denovo_WM_21:77:0.970
chr11	66056638	66056821	reg1000105.p1	13.335	+	AK308988 TSC_hg19_v1_chr11_-_66056607 AK226003 AK291124 NM_020470	-105	-	CR456710 TSC_hg19_v1_chr11_-_66056606 AK311173 AK310521 AF004876 BC001299	-199	-	TSC_hg19_v1_chr11_+_66045696 BC047953 NM_182553	-11053	+	TSC_hg19_v1_chr11_+_66059337 BC033898	2609	+	TSC_hg19_v1_chr11_+_66059364 NM_153266	2645	+	BC051340 AF279142 TSC_hg19_v1_chr11_-_66084516 AJ295846 BC098158 BC104484 BC105633 NM_020404	27783	-	AK308988|YIF1A|10897|Yip1 interacting factor homolog A (S. cerevisiae)##AK226003|YIF1A|10897|Yip1 interacting factor homolog A (S. cerevisiae)##AK291124|YIF1A|10897|Yip1 interacting factor homolog A (S. cerevisiae)##NM_020470|YIF1A|10897|Yip1 interacting factor homolog A (S. cerevisiae)##CR456710|YIF1A|10897|Yip1 interacting factor homolog A (S. cerevisiae)##AK310521|YIF1A|10897|Yip1 interacting factor homolog A (S. cerevisiae)##AF004876|YIF1A|10897|Yip1 interacting factor homolog A (S. cerevisiae)##BC001299|YIF1A|10897|Yip1 interacting factor homolog A (S. cerevisiae)##BC047953|CNIH2|254263|cornichon homolog 2 (Drosophila)##NM_182553|CNIH2|254263|cornichon homolog 2 (Drosophila)##BC033898|TMEM151A|256472|transmembrane protein 151A##NM_153266|TMEM151A|256472|transmembrane protein 151A##BC051340|CD248|57124|CD248 molecule, endosialin##AF279142|CD248|57124|CD248 molecule, endosialin##AJ295846|CD248|57124|CD248 molecule, endosialin##BC104484|CD248|57124|CD248 molecule, endosialin##BC105633|CD248|57124|CD248 molecule, endosialin##NM_020404|CD248|57124|CD248 molecule, endosialin	1.827519	denovo_WM_21:73:0.851	denovo_WM_21:-97:0.811
chr20	44486078	44486182	reg1000055.p1	13.306	+	AF124264 CR541771 CR541778 HQ258192 BC117155 BC117157 TSC_hg19_v1_chr20_-_44486011 AF014404 AK056668 AK298783 AK292494 X86032 AK296973 NM_005469	-121	-	TSC_hg19_v1_chr20_+_44462788 AK297622 AK095851	-23310	+	TSC_hg19_v1_chr20_+_44462489 AK293443 BC012904 NM_001042632 NM_001042633 NM_033421 NM_152897 AF523834 AL591562 BC019823 AF395845	-23654	+	NM_080752 AK056641 AK302767 AK316214 BC027611	110	+	NM_080603 TSC_hg19_v1_chr20_+_44509872 AK291304 AK026450 BC001672 BC080525	23733	+	BC039607 NM_080608	30107	-	AF124264|ACOT8|10005|acyl-CoA thioesterase 8##CR541771|ACOT8|10005|acyl-CoA thioesterase 8##CR541778|ACOT8|10005|acyl-CoA thioesterase 8##HQ258192|ACOT8|10005|acyl-CoA thioesterase 8##BC117155|ACOT8|10005|acyl-CoA thioesterase 8##BC117157|ACOT8|10005|acyl-CoA thioesterase 8##AF014404|ACOT8|10005|acyl-CoA thioesterase 8##AK056668|ACOT8|10005|acyl-CoA thioesterase 8##AK298783|ACOT8|10005|acyl-CoA thioesterase 8##AK292494|ACOT8|10005|acyl-CoA thioesterase 8##X86032|ACOT8|10005|acyl-CoA thioesterase 8##AK296973|ACOT8|10005|acyl-CoA thioesterase 8##NM_005469|ACOT8|10005|acyl-CoA thioesterase 8##AK297622|SNX21|90203|sorting nexin family member 21##AK095851|SNX21|90203|sorting nexin family member 21##AK293443|SNX21|90203|sorting nexin family member 21##BC012904|SNX21|90203|sorting nexin family member 21##NM_001042632|SNX21|90203|sorting nexin family member 21##NM_001042633|SNX21|90203|sorting nexin family member 21##NM_033421|SNX21|90203|sorting nexin family member 21##NM_152897|SNX21|90203|sorting nexin family member 21##AF523834|SNX21|90203|sorting nexin family member 21##AL591562|SNX21|90203|sorting nexin family member 21##BC019823|SNX21|90203|sorting nexin family member 21##AF395845|SNX21|90203|sorting nexin family member 21##NM_080752|ZSWIM3|140831|zinc finger, SWIM-type containing 3##AK056641|ZSWIM3|140831|zinc finger, SWIM-type containing 3##AK302767|ZSWIM3|140831|zinc finger, SWIM-type containing 3##AK316214|ZSWIM3|140831|zinc finger, SWIM-type containing 3##BC027611|ZSWIM3|140831|zinc finger, SWIM-type containing 3##NM_080603|ZSWIM1|90204|zinc finger, SWIM-type containing 1##AK291304|ZSWIM1|90204|zinc finger, SWIM-type containing 1##BC001672|ZSWIM1|90204|zinc finger, SWIM-type containing 1##BC080525|ZSWIM1|90204|zinc finger, SWIM-type containing 1##BC039607|SPATA25|128497|spermatogenesis associated 25##NM_080608|SPATA25|128497|spermatogenesis associated 25	0.44566	denovo_WM_21:-36:0.446
chr19	48972330	48972509	reg1000123.p2	13.271	+	BC035918 NM_170720	-7914	+	AF081466 NM_013348	-13654	+	TSC_hg19_v1_chr19_+_48949248 AF337808 BC002440 EF011614 AL713729 CU677962 DQ892630 DQ895868 AB075822 BC036281 BC047351	-23160	+	NM_004228 NM_017457 TSC_hg19_v1_chr19_+_48972572	99	+	TSC_hg19_v1_chr19_+_48972625 AB209573 BC038713 AK292405 U70728 AK299590 BC004361 AB528907 DQ892565 DQ896856 X99753	250	+	AB384647 TSC_hg19_v1_chr19_-_49014849	42421	-	BC035918|KCNJ14|3770|potassium inwardly-rectifying channel, subfamily J, member 14##NM_170720|KCNJ14|3770|potassium inwardly-rectifying channel, subfamily J, member 14##AF081466|KCNJ14|3770|potassium inwardly-rectifying channel, subfamily J, member 14##NM_013348|KCNJ14|3770|potassium inwardly-rectifying channel, subfamily J, member 14##AF337808|GRWD1|83743|glutamate-rich WD repeat containing 1##BC002440|GRWD1|83743|glutamate-rich WD repeat containing 1##EF011614|GRWD1|83743|glutamate-rich WD repeat containing 1##AL713729|GRWD1|83743|glutamate-rich WD repeat containing 1##DQ892630|GRWD1|83743|glutamate-rich WD repeat containing 1##DQ895868|GRWD1|83743|glutamate-rich WD repeat containing 1##BC036281|GRWD1|83743|glutamate-rich WD repeat containing 1##BC047351|GRWD1|83743|glutamate-rich WD repeat containing 1##NM_004228|CYTH2|9266|cytohesin 2##NM_017457|CYTH2|9266|cytohesin 2##AB209573|CYTH2|9266|cytohesin 2##BC038713|CYTH2|9266|cytohesin 2##AK292405|CYTH2|9266|cytohesin 2##U70728|CYTH2|9266|cytohesin 2##AK299590|CYTH2|9266|cytohesin 2##BC004361|CYTH2|9266|cytohesin 2##DQ892565|CYTH2|9266|cytohesin 2##DQ896856|CYTH2|9266|cytohesin 2##X99753|CYTH2|9266|cytohesin 2	1.272448	denovo_WM_21:12:0.972	denovo_WM_21:-58:0.301
chr1	154955675	154955805	reg1000125.p1	13.210	+	TSC_hg19_v1_chr1_+_154947168 AK307066 BC007751 AF274941 AF279897 BC015629 X54941 AB590248 DQ890700 DQ892972 DQ893884 DQ895958 EU176486 EU176487 BT007196 AF274943	-8509	+	TSC_hg19_v1_chr1_+_154947156 AK311769 BC070319 BC070320	-8587	+	TSC_hg19_v1_chr1_+_154947138 NM_001826	-8611	+	NM_001184891 NM_001184892 NM_025207 NM_201398 TSC_hg19_v1_chr1_+_154955827 AK090542 AX746501 BC032323 AK308243	63	+	BC011378 TSC_hg19_v1_chr1_+_154955840 AK025979 AF218022 AF520568 BC021096	107	+	AF268478 BC069140 NM_018655 BC096714 BC098148 BC098246 BC098253 AB451457	10332	+	AK307066|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##BC007751|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##AF274941|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##AF279897|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##BC015629|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##X54941|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##DQ890700|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##DQ892972|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##DQ893884|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##DQ895958|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##EU176486|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##EU176487|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##BT007196|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##AF274943|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##AK311769|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##BC070319|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##BC070320|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##NM_001826|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##NM_001184891|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##NM_001184892|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##NM_025207|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##NM_201398|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##AK090542|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##BC032323|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##AK308243|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##BC011378|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##AK025979|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##AF218022|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##AF520568|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##BC021096|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##AF268478|LENEP|55891|lens epithelial protein##BC069140|LENEP|55891|lens epithelial protein##NM_018655|LENEP|55891|lens epithelial protein##BC096714|LENEP|55891|lens epithelial protein##BC098148|LENEP|55891|lens epithelial protein##BC098246|LENEP|55891|lens epithelial protein##BC098253|LENEP|55891|lens epithelial protein##AB451457|LENEP|55891|lens epithelial protein	0.0	
chr12	54718751	54718892	reg1000136.p1	13.210	+	TSC_hg19_v1_chr12_-_54694800 L13974 BC005044 NM_001136023 AK313207	-24014	-	L24122 TSC_hg19_v1_chr12_-_54694667	-24164	-	TSC_hg19_v1_chr12_-_54689543 AK290555 AK290564 NM_006163 S77763	-29282	-	AF151878 NM_016057 AK311027 TSC_hg19_v1_chr12_+_54718914 AF161529 AK025956 AK026190	91	+	TSC_hg19_v1_chr12_+_54718922 AK293377 AK295325	99	+	TSC_hg19_v1_chr12_+_54718925 AB047848 AF086911	104	+	L13974|NFE2|4778|nuclear factor (erythroid-derived 2), 45kDa##BC005044|NFE2|4778|nuclear factor (erythroid-derived 2), 45kDa##NM_001136023|NFE2|4778|nuclear factor (erythroid-derived 2), 45kDa##AK313207|NFE2|4778|nuclear factor (erythroid-derived 2), 45kDa##L24122|NFE2|4778|nuclear factor (erythroid-derived 2), 45kDa##AK290555|NFE2|4778|nuclear factor (erythroid-derived 2), 45kDa##AK290564|NFE2|4778|nuclear factor (erythroid-derived 2), 45kDa##NM_006163|NFE2|4778|nuclear factor (erythroid-derived 2), 45kDa##S77763|NFE2|4778|nuclear factor (erythroid-derived 2), 45kDa##AF151878|COPZ1|22818|coatomer protein complex, subunit zeta 1##NM_016057|COPZ1|22818|coatomer protein complex, subunit zeta 1##AK311027|COPZ1|22818|coatomer protein complex, subunit zeta 1##AF161529|COPZ1|22818|coatomer protein complex, subunit zeta 1##AK025956|COPZ1|22818|coatomer protein complex, subunit zeta 1##AK026190|COPZ1|22818|coatomer protein complex, subunit zeta 1##AK293377|COPZ1|22818|coatomer protein complex, subunit zeta 1##AK295325|COPZ1|22818|coatomer protein complex, subunit zeta 1##AB047848|COPZ1|22818|coatomer protein complex, subunit zeta 1##AF086911|COPZ1|22818|coatomer protein complex, subunit zeta 1	1.100897	denovo_WM_21:73:0.934
chr9	34989471	34989655	reg1000109.p2	13.206	+	AB028968 TSC_hg19_v1_chr9_+_34958324	-31240	+	TSC_hg19_v1_chr9_+_34958175 BC041169 NM_015297	-31382	+	AK301951 AK302320 NM_001141917	-260065	-	NM_001135004 NM_012266 TSC_hg19_v1_chr9_+_34989739 AK023253 BC012115 AK314671 AF087870	154	+	AK299647 NM_001135005 TSC_hg19_v1_chr9_+_34990289	715	+	AF088982 TSC_hg19_v1_chr9_+_34990719	1155	+	AB028968|KIAA1045|23349|KIAA1045##BC041169|KIAA1045|23349|KIAA1045##NM_015297|KIAA1045|23349|KIAA1045##AK302320|FAM205A|259308|family with sequence similarity 205, member A##NM_001141917|FAM205A|259308|family with sequence similarity 205, member A##NM_001135004|DNAJB5|25822|DnaJ (Hsp40) homolog, subfamily B, member 5##NM_012266|DNAJB5|25822|DnaJ (Hsp40) homolog, subfamily B, member 5##AK023253|DNAJB5|25822|DnaJ (Hsp40) homolog, subfamily B, member 5##AK314671|DNAJB5|25822|DnaJ (Hsp40) homolog, subfamily B, member 5##AF087870|DNAJB5|25822|DnaJ (Hsp40) homolog, subfamily B, member 5##AK299647|DNAJB5|25822|DnaJ (Hsp40) homolog, subfamily B, member 5##NM_001135005|DNAJB5|25822|DnaJ (Hsp40) homolog, subfamily B, member 5##AF088982|DNAJB5|25822|DnaJ (Hsp40) homolog, subfamily B, member 5	0.267102	denovo_WM_21:-41:0.218
chr11	125462549	125462699	reg1000103.p1	13.200	+	AK291951 TSC_hg19_v1_chr11_+_125439375 AF010313 BC002390	-23217	+	TSC_hg19_v1_chr11_+_125439372 AK316539	-23253	+	TSC_hg19_v1_chr11_+_125439366 AK315841	-23258	+	TSC_hg19_v1_chr11_+_125462736 L47337 NM_152713 AK290040 AK290657 AX799092 L38961	114	+	TSC_hg19_v1_chr11_+_125462746 AK308902	122	+	TSC_hg19_v1_chr11_+_125462752 BX649102 BC020965 AK295892	133	+	AK291951|EI24|9538|etoposide induced 2.4 mRNA##AF010313|EI24|9538|etoposide induced 2.4 mRNA##BC002390|EI24|9538|etoposide induced 2.4 mRNA##AK316539|EI24|9538|etoposide induced 2.4 mRNA##AK315841|EI24|9538|etoposide induced 2.4 mRNA##L47337|STT3A|3703|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)##NM_152713|STT3A|3703|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)##AK290040|STT3A|3703|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)##AK290657|STT3A|3703|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)##L38961|STT3A|3703|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)##AK308902|STT3A|3703|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)##BX649102|STT3A|3703|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)##BC020965|STT3A|3703|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)##AK295892|STT3A|3703|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	0.287694	
chr16	1832631	1832815	reg1000035.p1	13.159	+	TSC_hg19_v1_chr16_-_1832576 NM_080861	-131	-	AK057850 TSC_hg19_v1_chr16_-_1832573	-150	-	TSC_hg19_v1_chr16_-_1832545 BC041897 BC047441 BC007588 BC035065 BC024244 AK074190 AK302041 BC065515	-288	-	TSC_hg19_v1_chr16_+_1832982 AK093593 AX748219 NM_012225 BC008005 AK001023 AF118394 BC002768 BX648907 AK315611 AK300696	236	+	TSC_hg19_v1_chr16_+_1833010 CU675895	289	+	AB464593 DQ891534 DQ894723 AK292182 AK313198 M86826 AK315808 AK309598 AK303146 BC025681 NM_001146006 NM_004970	10969	-	NM_080861|SPSB3|90864|splA/ryanodine receptor domain and SOCS box containing 3##AK057850|SPSB3|90864|splA/ryanodine receptor domain and SOCS box containing 3##BC041897|SPSB3|90864|splA/ryanodine receptor domain and SOCS box containing 3##BC047441|SPSB3|90864|splA/ryanodine receptor domain and SOCS box containing 3##BC007588|SPSB3|90864|splA/ryanodine receptor domain and SOCS box containing 3##BC035065|SPSB3|90864|splA/ryanodine receptor domain and SOCS box containing 3##BC024244|SPSB3|90864|splA/ryanodine receptor domain and SOCS box containing 3##AK074190|SPSB3|90864|splA/ryanodine receptor domain and SOCS box containing 3##BC065515|SPSB3|90864|splA/ryanodine receptor domain and SOCS box containing 3##AK093593|NUBP2|10101|nucleotide binding protein 2##NM_012225|NUBP2|10101|nucleotide binding protein 2##BC008005|NUBP2|10101|nucleotide binding protein 2##AK001023|NUBP2|10101|nucleotide binding protein 2##AF118394|NUBP2|10101|nucleotide binding protein 2##BC002768|NUBP2|10101|nucleotide binding protein 2##BX648907|NUBP2|10101|nucleotide binding protein 2##AK315611|NUBP2|10101|nucleotide binding protein 2##AK300696|NUBP2|10101|nucleotide binding protein 2##DQ891534|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##DQ894723|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##AK292182|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##AK313198|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##M86826|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##AK315808|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##AK303146|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##BC025681|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##NM_001146006|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##NM_004970|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit	0.898046	denovo_WM_21:-6:0.898
chr19	1041053	1041190	reg1000108.p1	13.154	+	AK310127 TSC_hg19_v1_chr19_+_1040114 AK301108 AK310909	-987	+	TSC_hg19_v1_chr19_+_1040105 NM_019112	-1029	+	AK024835 AK057960 AK293171 TSC_hg19_v1_chr19_+_1026627 BC141818 BC141833 D83735 AK222924 AK300788 D86059 BC148264 CR541810 CR541831 AY927510 AY927514	-14459	+	TSC_hg19_v1_chr19_+_1067170 BC065223 NM_012292	26022	+	AK304271 TSC_hg19_v1_chr19_+_1067315 AK304765 D86976	26205	+	TSC_hg19_v1_chr19_+_1067558 BC035564	26451	+	AK310127|ABCA7|10347|ATP-binding cassette, sub-family A (ABC1), member 7##AK301108|ABCA7|10347|ATP-binding cassette, sub-family A (ABC1), member 7##AK310909|ABCA7|10347|ATP-binding cassette, sub-family A (ABC1), member 7##NM_019112|ABCA7|10347|ATP-binding cassette, sub-family A (ABC1), member 7##AK024835|CNN2|1265|calponin 2##AK057960|CNN2|1265|calponin 2##AK293171|CNN2|1265|calponin 2##BC141818|CNN2|1265|calponin 2##BC141833|CNN2|1265|calponin 2##D83735|CNN2|1265|calponin 2##AK222924|CNN2|1265|calponin 2##AK300788|CNN2|1265|calponin 2##D86059|CNN2|1265|calponin 2##BC148264|CNN2|1265|calponin 2##CR541810|CNN2|1265|calponin 2##CR541831|CNN2|1265|calponin 2##AY927514|CNN2|1265|calponin 2##BC065223|HMHA1|23526|histocompatibility (minor) HA-1##NM_012292|HMHA1|23526|histocompatibility (minor) HA-1##AK304271|HMHA1|23526|histocompatibility (minor) HA-1##AK304765|HMHA1|23526|histocompatibility (minor) HA-1##D86976|HMHA1|23526|histocompatibility (minor) HA-1##BC035564|HMHA1|23526|histocompatibility (minor) HA-1	1.88561	denovo_WM_21:-2:0.929	denovo_WM_21:31:0.956
chr16	57769234	57769374	reg1000083.p1	13.104	+	TSC_hg19_v1_chr16_+_57728717 NM_032269 AK292558 BC030661 BC036667 AK093035 AX747872	-40575	+	AK172801 NM_170776 BC064508 AB049169 AK310124 AK301258 BC044222 AY140959	-67097	+	NM_001145774 AK297236 AK311156 TSC_hg19_v1_chr16_+_57673403 BC013207	-95987	+	TSC_hg19_v1_chr16_+_57769662 NM_005886	341	+	TSC_hg19_v1_chr16_+_57769741 AB209250	420	+	BC041132 AK299431 AK291737 NM_001130099	62497	-	NM_032269|CCDC135|84229|coiled-coil domain containing 135##AK292558|CCDC135|84229|coiled-coil domain containing 135##BC030661|CCDC135|84229|coiled-coil domain containing 135##BC036667|CCDC135|84229|coiled-coil domain containing 135##AK093035|CCDC135|84229|coiled-coil domain containing 135##AK172801|GPR97|222487|G protein-coupled receptor 97##NM_170776|GPR97|222487|G protein-coupled receptor 97##BC064508|GPR97|222487|G protein-coupled receptor 97##AB049169|GPR97|222487|G protein-coupled receptor 97##AK310124|GPR97|222487|G protein-coupled receptor 97##AK301258|GPR97|222487|G protein-coupled receptor 97##BC044222|GPR97|222487|G protein-coupled receptor 97##AY140959|GPR97|222487|G protein-coupled receptor 97##NM_001145774|GPR56|9289|G protein-coupled receptor 56##AK297236|GPR56|9289|G protein-coupled receptor 56##AK311156|GPR56|9289|G protein-coupled receptor 56##BC013207|GPR56|9289|G protein-coupled receptor 56##NM_005886|KATNB1|10300|katanin p80 (WD repeat containing) subunit B 1##AB209250|KATNB1|10300|katanin p80 (WD repeat containing) subunit B 1##BC041132|KIFC3|3801|kinesin family member C3##AK299431|KIFC3|3801|kinesin family member C3##AK291737|KIFC3|3801|kinesin family member C3##NM_001130099|KIFC3|3801|kinesin family member C3	1.866244	denovo_WM_21:4:0.899	denovo_WM_21:-38:0.967
chr19	36248846	36248962	reg1000068.p1	13.085	+	BC068046 AK297852 TSC_hg19_v1_chr19_-_36247931 AK056951 AK300695 NM_144617	-973	-	TSC_hg19_v1_chr19_-_36246416 AJ278121	-2441	-	AK026458 TSC_hg19_v1_chr19_-_36246323	-2637	-	NM_001039887 TSC_hg19_v1_chr19_+_36249072 AL833894 AK055219 BC017947 AK124144 BC110893	173	+	TSC_hg19_v1_chr19_+_36266477 AK127255 NM_001172630 NM_052948 AK096338 BC128586	17542	+	BC039710 TSC_hg19_v1_chr19_-_36303748	54832	-	BC068046|HSPB6|126393|heat shock protein, alpha-crystallin-related, B6##AK297852|HSPB6|126393|heat shock protein, alpha-crystallin-related, B6##AK056951|HSPB6|126393|heat shock protein, alpha-crystallin-related, B6##NM_144617|HSPB6|126393|heat shock protein, alpha-crystallin-related, B6##AJ278121|HSPB6|126393|heat shock protein, alpha-crystallin-related, B6##AK026458|HSPB6|126393|heat shock protein, alpha-crystallin-related, B6##NM_001039887|C19orf55|148137|chromosome 19 open reading frame 55##AL833894|C19orf55|148137|chromosome 19 open reading frame 55##AK055219|C19orf55|148137|chromosome 19 open reading frame 55##BC017947|C19orf55|148137|chromosome 19 open reading frame 55##AK124144|C19orf55|148137|chromosome 19 open reading frame 55##BC110893|C19orf55|148137|chromosome 19 open reading frame 55##AK127255|ARHGAP33|115703|Rho GTPase activating protein 33##NM_001172630|ARHGAP33|115703|Rho GTPase activating protein 33##NM_052948|ARHGAP33|115703|Rho GTPase activating protein 33##AK096338|ARHGAP33|115703|Rho GTPase activating protein 33##BC128586|ARHGAP33|115703|Rho GTPase activating protein 33##BC039710|PRODH2|58510|proline dehydrogenase (oxidase) 2	1.10652	denovo_WM_21:-60:0.285	denovo_WM_21:70:0.821
chr1	110881830	110882015	reg1000087.p2	12.955	+	AK310193 M64676 TSC_hg19_v1_chr1_+_110754079 BC101769	-127925	+	TSC_hg19_v1_chr1_+_110753347 NM_001039574 NM_004978	-128578	+	NM_001010898 AK289982 TSC_hg19_v1_chr1_+_110693135	-188788	+	AF368062 AF368063 AF368064 NM_001201545 NM_022768 BC098140 BC103493 BC103507 BC103660 TSC_hg19_v1_chr1_+_110882045	72	+	BC047479 TSC_hg19_v1_chr1_+_110882057	135	+	TSC_hg19_v1_chr1_+_110882092 AK022541 BC006397 BC062316	159	+	AK310193|KCNC4|3749|potassium voltage-gated channel, Shaw-related subfamily, member 4##M64676|KCNC4|3749|potassium voltage-gated channel, Shaw-related subfamily, member 4##BC101769|KCNC4|3749|potassium voltage-gated channel, Shaw-related subfamily, member 4##NM_001039574|KCNC4|3749|potassium voltage-gated channel, Shaw-related subfamily, member 4##NM_004978|KCNC4|3749|potassium voltage-gated channel, Shaw-related subfamily, member 4##NM_001010898|SLC6A17|388662|solute carrier family 6, member 17##AK289982|SLC6A17|388662|solute carrier family 6, member 17##AF368062|RBM15|64783|RNA binding motif protein 15##AF368063|RBM15|64783|RNA binding motif protein 15##AF368064|RBM15|64783|RNA binding motif protein 15##NM_001201545|RBM15|64783|RNA binding motif protein 15##NM_022768|RBM15|64783|RNA binding motif protein 15##BC098140|RBM15|64783|RNA binding motif protein 15##BC103493|RBM15|64783|RNA binding motif protein 15##BC103507|RBM15|64783|RNA binding motif protein 15##BC103660|RBM15|64783|RNA binding motif protein 15##BC047479|RBM15|64783|RNA binding motif protein 15##AK022541|RBM15|64783|RNA binding motif protein 15##BC006397|RBM15|64783|RNA binding motif protein 15##BC062316|RBM15|64783|RNA binding motif protein 15	1.180893	denovo_WM_21:-26:0.337	denovo_WM_21:106:0.809
chr19	14228600	14228721	reg1000038.p1	12.945	+	TSC_hg19_v1_chr19_-_14228563 AK290147	-91	-	AB528630 X07767 TSC_hg19_v1_chr19_-_14228549 BC039846 BC108259 NM_002730	-200	-	TSC_hg19_v1_chr19_-_14224999 AF208004 AF224718 NM_207518 AK292284 AF239744	-3606	-	AB104486 AB463417 CR457235 GQ129346 GQ129347 AF279307 BC007726 BC010014 BC002518 TSC_hg19_v1_chr19_-_14247395 AK223080 AK001288	18672	-	AK302134 TSC_hg19_v1_chr19_-_14247402 BC036521 AK001466 NM_018154	18762	-	TSC_hg19_v1_chr19_+_14247979 BX537706	19331	+	AK290147|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##X07767|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##BC039846|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##BC108259|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##NM_002730|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AF208004|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AF224718|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##NM_207518|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AK292284|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AF239744|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AB104486|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##CR457235|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##GQ129346|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##GQ129347|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##AF279307|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##BC007726|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##BC010014|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##AK223080|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##AK001288|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##AK302134|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##BC036521|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##AK001466|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##NM_018154|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##BX537706|LOC100507373|100507373|uncharacterized LOC100507373	1.939898	denovo_WM_21:-18:0.946	denovo_WM_21:-61:0.878
chr19	50269732	50269916	reg1000058.p1	12.887	+	NM_021733 BC058862	-3296	-	TSC_hg19_v1_chr19_+_50194833 AK299866	-74990	+	TSC_hg19_v1_chr19_+_50194384 NM_001136052 NM_001199752 NM_001199753 NM_152359 AK096516 AK289713 AK309087 AK290092 BC029104 AF357970	-75438	+	TSC_hg19_v1_chr19_+_50270224 NM_014203 NM_130787 AK302005	327	+	AK124343 TSC_hg19_v1_chr19_+_50270264	439	+	TSC_hg19_v1_chr19_+_50270274 BC014214 AL136925 DQ892253 DQ895454 AB527855 CU676931	568	+	NM_021733|TSKS|60385|testis-specific serine kinase substrate##BC058862|TSKS|60385|testis-specific serine kinase substrate##AK299866|CPT1C|126129|carnitine palmitoyltransferase 1C##NM_001136052|CPT1C|126129|carnitine palmitoyltransferase 1C##NM_001199752|CPT1C|126129|carnitine palmitoyltransferase 1C##NM_001199753|CPT1C|126129|carnitine palmitoyltransferase 1C##NM_152359|CPT1C|126129|carnitine palmitoyltransferase 1C##AK096516|CPT1C|126129|carnitine palmitoyltransferase 1C##AK289713|CPT1C|126129|carnitine palmitoyltransferase 1C##AK309087|CPT1C|126129|carnitine palmitoyltransferase 1C##AK290092|CPT1C|126129|carnitine palmitoyltransferase 1C##BC029104|CPT1C|126129|carnitine palmitoyltransferase 1C##AF357970|CPT1C|126129|carnitine palmitoyltransferase 1C##NM_014203|AP2A1|160|adaptor-related protein complex 2, alpha 1 subunit##NM_130787|AP2A1|160|adaptor-related protein complex 2, alpha 1 subunit##AK302005|AP2A1|160|adaptor-related protein complex 2, alpha 1 subunit##AK124343|AP2A1|160|adaptor-related protein complex 2, alpha 1 subunit##BC014214|AP2A1|160|adaptor-related protein complex 2, alpha 1 subunit##AL136925|AP2A1|160|adaptor-related protein complex 2, alpha 1 subunit##DQ892253|AP2A1|160|adaptor-related protein complex 2, alpha 1 subunit##DQ895454|AP2A1|160|adaptor-related protein complex 2, alpha 1 subunit	0.443597	denovo_WM_21:44:0.444
chr19	45873883	45874006	reg1000126.p1	12.844	+	TSC_hg19_v1_chr19_-_45873851 NM_000400 NM_001130867	-99	-	BC008346 TSC_hg19_v1_chr19_-_45873816 BC108255 AK303358 BC110522 BC110523	-206	-	BC025318 NM_177417 BC062998 BC073841	-29937	+	BC032298 AY869712 BC014499 BC020259 NM_006663 TSC_hg19_v1_chr19_-_45908318	34369	-	NM_012099 U86751 BC054044 BC046141 BC108889	35639	+	AK130326 BC064913 TSC_hg19_v1_chr19_-_45909620 NM_001142502	35651	-	NM_000400|ERCC2|2068|excision repair cross-complementing rodent repair deficiency, complementation group 2##NM_001130867|ERCC2|2068|excision repair cross-complementing rodent repair deficiency, complementation group 2##BC008346|ERCC2|2068|excision repair cross-complementing rodent repair deficiency, complementation group 2##BC108255|ERCC2|2068|excision repair cross-complementing rodent repair deficiency, complementation group 2##AK303358|ERCC2|2068|excision repair cross-complementing rodent repair deficiency, complementation group 2##BC110522|ERCC2|2068|excision repair cross-complementing rodent repair deficiency, complementation group 2##BC110523|ERCC2|2068|excision repair cross-complementing rodent repair deficiency, complementation group 2##BC025318|KLC3|147700|kinesin light chain 3##NM_177417|KLC3|147700|kinesin light chain 3##BC062998|KLC3|147700|kinesin light chain 3##BC073841|KLC3|147700|kinesin light chain 3##BC032298|PPP1R13L|10848|protein phosphatase 1, regulatory subunit 13 like##AY869712|PPP1R13L|10848|protein phosphatase 1, regulatory subunit 13 like##BC014499|PPP1R13L|10848|protein phosphatase 1, regulatory subunit 13 like##BC020259|PPP1R13L|10848|protein phosphatase 1, regulatory subunit 13 like##NM_006663|PPP1R13L|10848|protein phosphatase 1, regulatory subunit 13 like##NM_012099|CD3EAP|10849|CD3e molecule, epsilon associated protein##U86751|CD3EAP|10849|CD3e molecule, epsilon associated protein##BC054044|CD3EAP|10849|CD3e molecule, epsilon associated protein##BC046141|CD3EAP|10849|CD3e molecule, epsilon associated protein##BC108889|CD3EAP|10849|CD3e molecule, epsilon associated protein##AK130326|PPP1R13L|10848|protein phosphatase 1, regulatory subunit 13 like##BC064913|PPP1R13L|10848|protein phosphatase 1, regulatory subunit 13 like##NM_001142502|PPP1R13L|10848|protein phosphatase 1, regulatory subunit 13 like	1.79869	denovo_WM_21:4:0.875	denovo_WM_21:97:0.924
chr14	94492590	94492686	reg1000089.p1	12.843	+	TSC_hg19_v1_chr14_-_94443079 AB488462 AK057078 NM_001202429	-49562	-	AK303686 TSC_hg19_v1_chr14_-_94442905	-49730	-	AB056723 NM_016150	-68872	-	TSC_hg19_v1_chr14_+_94492685 BC009615 BC068058 NM_023112	65	+	AK025569 TSC_hg19_v1_chr14_+_94492747	110	+	AB209382 AF161446 AK294613 TSC_hg19_v1_chr14_-_94547557 BC096826 AL136886 BC008847 BC009406 BX537533 AK296726 AK297232 AK304504 AK025162 AF214731 NM_020414	54888	-	AB488462|ASB2|51676|ankyrin repeat and SOCS box containing 2##AK057078|ASB2|51676|ankyrin repeat and SOCS box containing 2##NM_001202429|ASB2|51676|ankyrin repeat and SOCS box containing 2##AK303686|ASB2|51676|ankyrin repeat and SOCS box containing 2##AB056723|ASB2|51676|ankyrin repeat and SOCS box containing 2##NM_016150|ASB2|51676|ankyrin repeat and SOCS box containing 2##BC009615|OTUB2|78990|OTU domain, ubiquitin aldehyde binding 2##BC068058|OTUB2|78990|OTU domain, ubiquitin aldehyde binding 2##NM_023112|OTUB2|78990|OTU domain, ubiquitin aldehyde binding 2##AK025569|OTUB2|78990|OTU domain, ubiquitin aldehyde binding 2##AB209382|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24##AF161446|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24##AK294613|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24##BC096826|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24##AL136886|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24##BC008847|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24##BC009406|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24##BX537533|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24##AK296726|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24##AK297232|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24##AK304504|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24##AK025162|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24##AF214731|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24##NM_020414|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	0.121814	
chr4	52709021	52709158	reg1000046.p1	12.827	+	AK025164 NM_025087 BC137387 BC137388	-3720817	+	TSC_hg19_v1_chr4_-_48908795 CR749310 BC032808 AK298305 NM_001014446 NM_152398	-3800310	-	TSC_hg19_v1_chr4_+_48833104 NM_001079840 NM_001079841 NM_017830 AK297864 AF323665 AF324350 AK000462 BC003409 NM_001079839 NM_001079842 NM_001168254 BC088361	-3875838	+	AK124346 NM_001040402 NM_015115 TSC_hg19_v1_chr4_+_52709318 BC053897 AK294896 BX537944 AK027051 D87466 BC041702 AM392554 AM392637 AM392729 AM393240	197	+	CR749811 NM_001024611	174696	-	BT019433 CR456810 DQ893140 DQ896425 EU176433 U29586 TSC_hg19_v1_chr4_-_52904447 AK299765 BC020709 AK289892 U31116 NM_000232	195368	-	AK025164|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##NM_025087|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##BC137387|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##BC137388|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##CR749310|OCIAD2|132299|OCIA domain containing 2##BC032808|OCIAD2|132299|OCIA domain containing 2##AK298305|OCIAD2|132299|OCIA domain containing 2##NM_001014446|OCIAD2|132299|OCIA domain containing 2##NM_152398|OCIAD2|132299|OCIA domain containing 2##NM_001079840|OCIAD1|54940|OCIA domain containing 1##NM_001079841|OCIAD1|54940|OCIA domain containing 1##NM_017830|OCIAD1|54940|OCIA domain containing 1##AK297864|OCIAD1|54940|OCIA domain containing 1##AF323665|OCIAD1|54940|OCIA domain containing 1##AF324350|OCIAD1|54940|OCIA domain containing 1##AK000462|OCIAD1|54940|OCIA domain containing 1##BC003409|OCIAD1|54940|OCIA domain containing 1##NM_001079839|OCIAD1|54940|OCIA domain containing 1##NM_001079842|OCIAD1|54940|OCIA domain containing 1##NM_001168254|OCIAD1|54940|OCIA domain containing 1##BC088361|OCIAD1|54940|OCIA domain containing 1##AK124346|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##NM_001040402|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##NM_015115|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##BC053897|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AK294896|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##BX537944|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AK027051|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##D87466|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##BC041702|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM392554|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM392637|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM392729|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM393240|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##CR749811|LRRC66|339977|leucine rich repeat containing 66##NM_001024611|LRRC66|339977|leucine rich repeat containing 66##BT019433|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##CR456810|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##DQ893140|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##DQ896425|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##EU176433|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##U29586|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##AK299765|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##BC020709|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##AK289892|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##U31116|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##NM_000232|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)	0.071514	
chrX	49047673	49047857	reg1000077.p2	12.827	+	TSC_hg19_v1_chrX_-_49042854 AK299407	-4911	-	TSC_hg19_v1_chrX_-_49042840 BT007423 CR457211 DQ891474 DQ894662 AB464065 AJ011654 NM_006150 AK300866 AK314788 BC002468 BC016856	-4975	-	NM_002668 TSC_hg19_v1_chrX_+_49028254 L09604 BC109066 AB591027	-19502	+	TSC_hg19_v1_chrX_+_49047887 CU687901	125	+	TSC_hg19_v1_chrX_-_49056653 AB464258 CU687900 AK313030 AK094376 AK295524 AK315953 BC064550 NM_003179	8917	-	AF067227 JF701915 AF201304 AJ224874 NM_005183	42036	-	AK299407|PRICKLE3|4007|prickle homolog 3 (Drosophila)##BT007423|PRICKLE3|4007|prickle homolog 3 (Drosophila)##CR457211|PRICKLE3|4007|prickle homolog 3 (Drosophila)##DQ891474|PRICKLE3|4007|prickle homolog 3 (Drosophila)##DQ894662|PRICKLE3|4007|prickle homolog 3 (Drosophila)##AJ011654|PRICKLE3|4007|prickle homolog 3 (Drosophila)##NM_006150|PRICKLE3|4007|prickle homolog 3 (Drosophila)##AK300866|PRICKLE3|4007|prickle homolog 3 (Drosophila)##AK314788|PRICKLE3|4007|prickle homolog 3 (Drosophila)##BC002468|PRICKLE3|4007|prickle homolog 3 (Drosophila)##BC016856|PRICKLE3|4007|prickle homolog 3 (Drosophila)##NM_002668|PLP2|5355|proteolipid protein 2 (colonic epithelium-enriched)##L09604|PLP2|5355|proteolipid protein 2 (colonic epithelium-enriched)##BC109066|PLP2|5355|proteolipid protein 2 (colonic epithelium-enriched)##AK313030|SYP|6855|synaptophysin##AK094376|SYP|6855|synaptophysin##AK295524|SYP|6855|synaptophysin##AK315953|SYP|6855|synaptophysin##BC064550|SYP|6855|synaptophysin##NM_003179|SYP|6855|synaptophysin##AF067227|CACNA1F|778|calcium channel, voltage-dependent, L type, alpha 1F subunit##JF701915|CACNA1F|778|calcium channel, voltage-dependent, L type, alpha 1F subunit##AF201304|CACNA1F|778|calcium channel, voltage-dependent, L type, alpha 1F subunit##AJ224874|CACNA1F|778|calcium channel, voltage-dependent, L type, alpha 1F subunit##NM_005183|CACNA1F|778|calcium channel, voltage-dependent, L type, alpha 1F subunit	2.696374	denovo_WM_21:-13:0.744	denovo_WM_21:57:0.980
chr19	41769874	41770056	reg1000102.p1	12.822	+	TSC_hg19_v1_chr19_+_41768461 NM_144732 AK225850 AK023006 AK308078	-1498	+	TSC_hg19_v1_chr19_+_41725293 AK310881 AB385214 DQ894117	-44677	+	TSC_hg19_v1_chr19_+_41725261 S65125 X57019	-44704	+	TSC_hg19_v1_chr19_+_41770226 NM_007040 AJ007509	184	+	TSC_hg19_v1_chr19_+_41770281 AK022863 AK127057 AK291762 AK308156	312	+	TSC_hg19_v1_chr19_+_41770326 BC009988	341	+	NM_144732|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK225850|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK023006|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK308078|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK310881|AXL|558|AXL receptor tyrosine kinase##DQ894117|AXL|558|AXL receptor tyrosine kinase##S65125|AXL|558|AXL receptor tyrosine kinase##X57019|AXL|558|AXL receptor tyrosine kinase##NM_007040|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AJ007509|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK022863|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK127057|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK291762|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK308156|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##BC009988|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1	1.578946	denovo_WM_21:8:0.415	denovo_WM_21:38:0.641	denovo_WM_21:-80:0.439
chr3	88108203	88108318	reg1000112.p1	12.820	+	BC052980 TSC_hg19_v1_chr3_-_88108150 AL117392 NM_001008390 NM_003663	-117	-	NM_000866	-76535	+	AB587506 L18781 X72215 X62429 D10216 NM_000306 NM_001122757	-782587	-	AF543494 NM_018293	80001	+	NM_001195308 BC005222	90764	-	AL832398 NM_173824 TSC_hg19_v1_chr3_+_88199126 BC024188 AK297719 AK313547	90768	+	BC052980|CGGBP1|8545|CGG triplet repeat binding protein 1##AL117392|CGGBP1|8545|CGG triplet repeat binding protein 1##NM_001008390|CGGBP1|8545|CGG triplet repeat binding protein 1##NM_003663|CGGBP1|8545|CGG triplet repeat binding protein 1##NM_000866|HTR1F|3355|5-hydroxytryptamine (serotonin) receptor 1F##L18781|POU1F1|5449|POU class 1 homeobox 1##X72215|POU1F1|5449|POU class 1 homeobox 1##X62429|POU1F1|5449|POU class 1 homeobox 1##D10216|POU1F1|5449|POU class 1 homeobox 1##NM_000306|POU1F1|5449|POU class 1 homeobox 1##NM_001122757|POU1F1|5449|POU class 1 homeobox 1##AF543494|ZNF654|55279|zinc finger protein 654##NM_018293|ZNF654|55279|zinc finger protein 654##NM_001195308|CGGBP1|8545|CGG triplet repeat binding protein 1##BC005222|CGGBP1|8545|CGG triplet repeat binding protein 1##AL832398|C3orf38|285237|chromosome 3 open reading frame 38##NM_173824|C3orf38|285237|chromosome 3 open reading frame 38##BC024188|C3orf38|285237|chromosome 3 open reading frame 38##AK297719|C3orf38|285237|chromosome 3 open reading frame 38##AK313547|C3orf38|285237|chromosome 3 open reading frame 38	0.010029	
chr19	39340661	39340845	reg1000064.p1	12.807	+	AB587509 TSC_hg19_v1_chr19_-_39340622 AB044547 NM_001533	-128	-	AK298384 TSC_hg19_v1_chr19_-_39340578	-177	-	TSC_hg19_v1_chr19_-_39340551 AK313652 BC069184	-202	-	TSC_hg19_v1_chr19_-_39342988 AK292115 NM_001005335 AK301062	2223	-	TSC_hg19_v1_chr19_-_39368901 AK127808 AK126119 AK298327 NM_001195833 NM_198445	28157	-	TSC_hg19_v1_chr19_+_39390332 NM_001243116 AB362577	49548	+	AB044547|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##NM_001533|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AK298384|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AK313652|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##BC069184|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AK292115|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##NM_001005335|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AK301062|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AK127808|RINL|126432|Ras and Rab interactor-like##AK126119|RINL|126432|Ras and Rab interactor-like##AK298327|RINL|126432|Ras and Rab interactor-like##NM_001195833|RINL|126432|Ras and Rab interactor-like##NM_198445|RINL|126432|Ras and Rab interactor-like##NM_001243116|NFKBIB|4793|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta	0.658812	denovo_WM_21:-9:0.659
chrX	49125622	49125807	reg1000129.p1	12.772	+	AK292052 AK299988 TSC_hg19_v1_chrX_-_49121173 AF277993 NM_001114377 NM_014009	-4485	-	BC000972 AK316375 TSC_hg19_v1_chrX_+_49091994 AJ005890 DQ894170 EU176573 AB527482 BC011675	-33677	+	AK298264 TSC_hg19_v1_chrX_+_49091935 AK296911 AK291976	-33766	+	TSC_hg19_v1_chrX_+_49126305 AK303738 NM_001184745 NM_033215	589	+	TSC_hg19_v1_chrX_+_49126329 BC131588	615	+	AK056909 TSC_hg19_v1_chrX_+_49126512	784	+	AK292052|FOXP3|50943|forkhead box P3##AK299988|FOXP3|50943|forkhead box P3##AF277993|FOXP3|50943|forkhead box P3##NM_001114377|FOXP3|50943|forkhead box P3##NM_014009|FOXP3|50943|forkhead box P3##BC000972|CCDC22|28952|coiled-coil domain containing 22##AK316375|CCDC22|28952|coiled-coil domain containing 22##AJ005890|CCDC22|28952|coiled-coil domain containing 22##DQ894170|CCDC22|28952|coiled-coil domain containing 22##EU176573|CCDC22|28952|coiled-coil domain containing 22##BC011675|CCDC22|28952|coiled-coil domain containing 22##AK298264|CCDC22|28952|coiled-coil domain containing 22##AK296911|CCDC22|28952|coiled-coil domain containing 22##AK291976|CCDC22|28952|coiled-coil domain containing 22##AK303738|PPP1R3F|89801|protein phosphatase 1, regulatory subunit 3F##NM_001184745|PPP1R3F|89801|protein phosphatase 1, regulatory subunit 3F##NM_033215|PPP1R3F|89801|protein phosphatase 1, regulatory subunit 3F##BC131588|PPP1R3F|89801|protein phosphatase 1, regulatory subunit 3F##AK056909|PPP1R3F|89801|protein phosphatase 1, regulatory subunit 3F	2.59776	denovo_WM_21:-25:0.423	denovo_WM_21:25:0.486	denovo_WM_21:-77:0.908	denovo_WM_21:88:0.781
chr1	206137850	206138035	reg1000025.p1	12.731	+	TSC_hg19_v1_chr1_-_206137445 AK124556	-494	-	BC151208 BC136538 BC144233 AF331525 NM_052934 NM_134325	-225376	-	BC039170 BC063477 AK057131 AK290786 TSC_hg19_v1_chr1_-_205819261 NM_152491	-318683	-	BC035696 NM_001123168 BC137545 BC137546	974	+	NM_000707 AF030512 AF101726 L37112 AB528977 EU432111	86419	+	AK122631 NM_001007544	150704	-	AK124556|LOC100132966|100132966|uncharacterized LOC100132966##BC151208|SLC26A9|115019|solute carrier family 26, member 9##BC136538|SLC26A9|115019|solute carrier family 26, member 9##BC144233|SLC26A9|115019|solute carrier family 26, member 9##AF331525|SLC26A9|115019|solute carrier family 26, member 9##NM_052934|SLC26A9|115019|solute carrier family 26, member 9##NM_134325|SLC26A9|115019|solute carrier family 26, member 9##BC039170|PM20D1|148811|peptidase M20 domain containing 1##BC063477|PM20D1|148811|peptidase M20 domain containing 1##AK057131|PM20D1|148811|peptidase M20 domain containing 1##AK290786|PM20D1|148811|peptidase M20 domain containing 1##NM_152491|PM20D1|148811|peptidase M20 domain containing 1##BC035696|FAM72A|729533|family with sequence similarity 72, member A##NM_001123168|FAM72A|729533|family with sequence similarity 72, member A##BC137545|FAM72A|729533|family with sequence similarity 72, member A##BC137546|FAM72B|653820|family with sequence similarity 72, member B##NM_000707|AVPR1B|553|arginine vasopressin receptor 1B##AF030512|AVPR1B|553|arginine vasopressin receptor 1B##AF101726|AVPR1B|553|arginine vasopressin receptor 1B##L37112|AVPR1B|553|arginine vasopressin receptor 1B##EU432111|AVPR1B|553|arginine vasopressin receptor 1B##AK122631|C1orf186|440712|chromosome 1 open reading frame 186##NM_001007544|C1orf186|440712|chromosome 1 open reading frame 186	0.965236	denovo_WM_21:-50:0.965
chr2	97523816	97523943	reg1000128.p1	12.731	+	TSC_hg19_v1_chr2_-_97523744 AB528054 CU689148 AF151034 BC031303 AB209367 AK312193 NM_016466	-137	-	AF492401 AY196212 BC107056 AK057011 AK092564 AX747600 NM_144994	-14134	-	TSC_hg19_v1_chr2_+_97482006 BC037272 AK126847 NM_017623 NM_199078 BC007199 AF216965 AK000025 CU675553	-41397	+	TSC_hg19_v1_chr2_-_97535634 BC109104 BC109103	11752	-	TSC_hg19_v1_chr2_-_97535818 AY358842 NM_017789	11882	-	AF151068 NM_001172667	36997	-	AF151034|ANKRD39|51239|ankyrin repeat domain 39##BC031303|ANKRD39|51239|ankyrin repeat domain 39##AK312193|ANKRD39|51239|ankyrin repeat domain 39##NM_016466|ANKRD39|51239|ankyrin repeat domain 39##AF492401|ANKRD23|200539|ankyrin repeat domain 23##AY196212|ANKRD23|200539|ankyrin repeat domain 23##BC107056|ANKRD23|200539|ankyrin repeat domain 23##AK057011|ANKRD23|200539|ankyrin repeat domain 23##AK092564|ANKRD23|200539|ankyrin repeat domain 23##NM_144994|ANKRD23|200539|ankyrin repeat domain 23##BC037272|CNNM3|26505|cyclin M3##AK126847|CNNM3|26505|cyclin M3##NM_017623|CNNM3|26505|cyclin M3##NM_199078|CNNM3|26505|cyclin M3##BC007199|CNNM3|26505|cyclin M3##AF216965|CNNM3|26505|cyclin M3##AK000025|CNNM3|26505|cyclin M3##BC109104|SEMA4C|54910|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C##BC109103|SEMA4C|54910|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C##AY358842|SEMA4C|54910|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C##NM_017789|SEMA4C|54910|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C##AF151068|FAM178B|51252|family with sequence similarity 178, member B##NM_001172667|FAM178B|51252|family with sequence similarity 178, member B	0.146687	
chr1	150601634	150601792	reg1000150.p1	12.716	+	TSC_hg19_v1_chr1_-_150601610 AK290064 NM_207045 NM_207046 NM_207047	-131	-	TSC_hg19_v1_chr1_-_150587883 AK124918	-13794	-	TSC_hg19_v1_chr1_-_150552129 NM_001197320 NM_021960 NM_182763	-49543	-	TSC_hg19_v1_chr1_-_150601913 CR457130 CR536578 EU832303 EU832387	216	-	TSC_hg19_v1_chr1_-_150602036 BC069208	315	-	TSC_hg19_v1_chr1_-_150602045 BC000436 BC004461	330	-	AK290064|ENSA|2029|endosulfine alpha##NM_207045|ENSA|2029|endosulfine alpha##NM_207046|ENSA|2029|endosulfine alpha##NM_207047|ENSA|2029|endosulfine alpha##NM_001197320|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##NM_021960|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##NM_182763|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##CR457130|ENSA|2029|endosulfine alpha##CR536578|ENSA|2029|endosulfine alpha##EU832303|ENSA|2029|endosulfine alpha##EU832387|ENSA|2029|endosulfine alpha##BC069208|ENSA|2029|endosulfine alpha##BC000436|ENSA|2029|endosulfine alpha##BC004461|ENSA|2029|endosulfine alpha	1.029721	denovo_WM_21:-30:0.891
chr14	23755389	23755526	reg1000116.p1	12.620	+	NM_020834 TSC_hg19_v1_chr14_-_23755308	-132	-	AB037864 AF463523 TSC_hg19_v1_chr14_-_23755306 AK296927	-188	-	TSC_hg19_v1_chr14_-_23652870 AL365342 NM_012244 Y18483 AL365346 AK223610	-102585	-	NM_001199864 NM_004050 AK289519 TSC_hg19_v1_chr14_+_23776072 BC104789 BC113522 D87461 BC011637 NM_001199839	20587	+	NM_004643	33939	+	TSC_hg19_v1_chr14_+_23790671 BX247976 BC010939	35217	+	NM_020834|HOMEZ|57594|homeobox and leucine zipper encoding##AB037864|HOMEZ|57594|homeobox and leucine zipper encoding##AF463523|HOMEZ|57594|homeobox and leucine zipper encoding##AK296927|HOMEZ|57594|homeobox and leucine zipper encoding##AL365342|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##NM_012244|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##Y18483|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##AL365346|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##AK223610|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##NM_001199864|BCL2L2-PABPN1|100529063|BCL2L2-PABPN1 readthrough##NM_004050|BCL2L2|599|BCL2-like 2##AK289519|BCL2L2|599|BCL2-like 2##BC104789|BCL2L2|599|BCL2-like 2##BC113522|BCL2L2|599|BCL2-like 2##D87461|BCL2L2|599|BCL2-like 2##BC011637|BCL2L2-PABPN1|100529063|BCL2L2-PABPN1 readthrough##NM_001199839|BCL2L2|599|BCL2-like 2##NM_004643|PABPN1|8106|poly(A) binding protein, nuclear 1##BX247976|PABPN1|8106|poly(A) binding protein, nuclear 1##BC010939|PABPN1|8106|poly(A) binding protein, nuclear 1	0.488201	denovo_WM_21:-18:0.388
chr2	44395513	44395689	reg1000082.p2	12.616	+	TSC_hg19_v1_chr2_-_44223145 BC130285 AY289212 NM_133259	-172462	-	BC026034 TSC_hg19_v1_chr2_-_44223116	-172483	-	AK299869 TSC_hg19_v1_chr2_-_44223114 AK125781 AK290016 AK308348	-172488	-	TSC_hg19_v1_chr2_+_44396013 NM_001033556 NM_001033557 NM_002706 NM_177968 NM_177969 AK056009 AK291214 DQ023508 DQ023509 DQ023510 DQ023511 BC064381 AJ271832 AJ271835 BC012002	414	+	TSC_hg19_v1_chr2_+_44396066 AL833035	509	+	NM_000341 BC022386 AK309145 AK313157 AB033549 AK091932 AK289636 L11696 M95548 AK223146 BC093624 BC093626 D82326 CU692594 DQ892031 DQ895222 DQ023513 DQ023515 DQ023516 DQ023517	107034	+	BC130285|LRPPRC|10128|leucine-rich PPR-motif containing##AY289212|LRPPRC|10128|leucine-rich PPR-motif containing##NM_133259|LRPPRC|10128|leucine-rich PPR-motif containing##BC026034|LRPPRC|10128|leucine-rich PPR-motif containing##AK299869|LRPPRC|10128|leucine-rich PPR-motif containing##AK125781|LRPPRC|10128|leucine-rich PPR-motif containing##AK290016|LRPPRC|10128|leucine-rich PPR-motif containing##AK308348|LRPPRC|10128|leucine-rich PPR-motif containing##NM_001033556|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_001033557|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_002706|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_177968|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_177969|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AK056009|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AK291214|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023508|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023509|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023510|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023511|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC064381|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AJ271832|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AJ271835|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC012002|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AL833035|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_000341|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC022386|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK309145|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK313157|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AB033549|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK091932|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK289636|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##L11696|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##M95548|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK223146|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC093624|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC093626|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ892031|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ895222|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023513|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023515|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023516|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023517|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1	0.954363	denovo_WM_21:-40:0.954
chr11	13299045	13299189	reg1000137.p1	12.589	+	TSC_hg19_v1_chr11_+_13030883 NM_001080521	-268193	+	TSC_hg19_v1_chr11_+_12960793 AK075236	-338306	+	TSC_hg19_v1_chr11_+_12695982 NM_021961	-603154	+	TSC_hg19_v1_chr11_+_13299288 NM_001030272 NM_001030273 NM_001178	175	+	TSC_hg19_v1_chr11_+_13299331 AK315174	215	+	BC041129 TSC_hg19_v1_chr11_+_13299351 AK291510	241	+	NM_001080521|RASSF10|644943|Ras association (RalGDS/AF-6) domain family (N-terminal) member 10##AK075236|TEAD1|7003|TEA domain family member 1 (SV40 transcriptional enhancer factor)##NM_021961|TEAD1|7003|TEA domain family member 1 (SV40 transcriptional enhancer factor)##NM_001030272|ARNTL|406|aryl hydrocarbon receptor nuclear translocator-like##NM_001030273|ARNTL|406|aryl hydrocarbon receptor nuclear translocator-like##NM_001178|ARNTL|406|aryl hydrocarbon receptor nuclear translocator-like##AK315174|ARNTL|406|aryl hydrocarbon receptor nuclear translocator-like##BC041129|ARNTL|406|aryl hydrocarbon receptor nuclear translocator-like##AK291510|ARNTL|406|aryl hydrocarbon receptor nuclear translocator-like	1.07284	denovo_WM_21:35:0.287	denovo_WM_21:81:0.664
chr3	126422969	126423075	reg1000106.p1	12.571	+	TSC_hg19_v1_chr3_-_126373968 NM_001173513 NM_052883	-49046	-	TSC_hg19_v1_chr3_-_126373947 AK299502 BC030028 BC050032	-49108	-	AB113648 NM_001039783	-95625	-	TSC_hg19_v1_chr3_+_126423084 AK311056 AK310910 BC006123 NM_032343	55	+	AB385178 NM_032242 X87832	284418	+	AK097460 BC137154 BC137155 TSC_hg19_v1_chr3_+_126912016	488972	+	NM_001173513|TXNRD3|114112|thioredoxin reductase 3##NM_052883|TXNRD3|114112|thioredoxin reductase 3##AK299502|TXNRD3|114112|thioredoxin reductase 3##BC030028|TXNRD3|114112|thioredoxin reductase 3##BC050032|TXNRD3|114112|thioredoxin reductase 3##AB113648|TXNRD3NB|645840|thioredoxin reductase 3 neighbor##NM_001039783|TXNRD3NB|645840|thioredoxin reductase 3 neighbor##AK311056|CHCHD6|84303|coiled-coil-helix-coiled-coil-helix domain containing 6##AK310910|CHCHD6|84303|coiled-coil-helix-coiled-coil-helix domain containing 6##BC006123|CHCHD6|84303|coiled-coil-helix-coiled-coil-helix domain containing 6##NM_032343|CHCHD6|84303|coiled-coil-helix-coiled-coil-helix domain containing 6##NM_032242|PLXNA1|5361|plexin A1##X87832|PLXNA1|5361|plexin A1##AK097460|C3orf56|285311|chromosome 3 open reading frame 56##BC137154|C3orf56|285311|chromosome 3 open reading frame 56##BC137155|C3orf56|285311|chromosome 3 open reading frame 56	0.059307	
chr19	55851070	55851208	reg1000032.p2	12.520	+	BC171904 BC171893 BC171901 TSC_hg19_v1_chr19_-_55836705 NM_001085488	-14450	-	BC016681 TSC_hg19_v1_chr19_+_55813629	-37524	+	TSC_hg19_v1_chr19_+_55813404 AK124999	-37726	+	AK308586 NM_032701 TSC_hg19_v1_chr19_+_55851243 AK304562 BC044889	121	+	BC064548 AK057427 AY152398 BC026123 NM_144613	14983	-	TSC_hg19_v1_chr19_-_55874621 BC031875 AK127979 NM_001145402	23475	-	BC171904|TMEM150B|284417|transmembrane protein 150B##BC171893|TMEM150B|284417|transmembrane protein 150B##BC171901|TMEM150B|284417|transmembrane protein 150B##NM_001085488|TMEM150B|284417|transmembrane protein 150B##BC016681|BRSK1|84446|BR serine/threonine kinase 1##AK124999|BRSK1|84446|BR serine/threonine kinase 1##AK308586|SUV420H2|84787|suppressor of variegation 4-20 homolog 2 (Drosophila)##NM_032701|SUV420H2|84787|suppressor of variegation 4-20 homolog 2 (Drosophila)##AK304562|SUV420H2|84787|suppressor of variegation 4-20 homolog 2 (Drosophila)##BC044889|SUV420H2|84787|suppressor of variegation 4-20 homolog 2 (Drosophila)##BC064548|COX6B2|125965|cytochrome c oxidase subunit VIb polypeptide 2 (testis)##AK057427|COX6B2|125965|cytochrome c oxidase subunit VIb polypeptide 2 (testis)##AY152398|COX6B2|125965|cytochrome c oxidase subunit VIb polypeptide 2 (testis)##BC026123|COX6B2|125965|cytochrome c oxidase subunit VIb polypeptide 2 (testis)##NM_144613|COX6B2|125965|cytochrome c oxidase subunit VIb polypeptide 2 (testis)##BC031875|FAM71E2|284418|family with sequence similarity 71, member E2##AK127979|FAM71E2|284418|family with sequence similarity 71, member E2##NM_001145402|FAM71E2|284418|family with sequence similarity 71, member E2	1.666772	denovo_WM_21:-8:0.946	denovo_WM_21:44:0.710
chr16	74700813	74700972	reg1000142.p1	12.513	+	TSC_hg19_v1_chr16_-_74700775 NM_018124	-115	-	TSC_hg19_v1_chr16_-_74700758 AK291200	-140	-	TSC_hg19_v1_chr16_-_74700738 BC059371	-162	-	BC028141 AK091708 AX747141 NM_001142497 NM_152649	33845	-	TSC_hg19_v1_chr16_-_74808693 AK315512 BC002679 BC004263	107693	-	BC017049 TSC_hg19_v1_chr16_-_74808722 AK058016 AK303878 NM_024306	107832	-	NM_018124|RFWD3|55159|ring finger and WD repeat domain 3##AK291200|RFWD3|55159|ring finger and WD repeat domain 3##BC059371|RFWD3|55159|ring finger and WD repeat domain 3##BC028141|MLKL|197259|mixed lineage kinase domain-like##AK091708|MLKL|197259|mixed lineage kinase domain-like##NM_001142497|MLKL|197259|mixed lineage kinase domain-like##NM_152649|MLKL|197259|mixed lineage kinase domain-like##AK315512|FA2H|79152|fatty acid 2-hydroxylase##BC002679|FA2H|79152|fatty acid 2-hydroxylase##BC004263|FA2H|79152|fatty acid 2-hydroxylase##BC017049|FA2H|79152|fatty acid 2-hydroxylase##AK058016|FA2H|79152|fatty acid 2-hydroxylase##AK303878|FA2H|79152|fatty acid 2-hydroxylase##NM_024306|FA2H|79152|fatty acid 2-hydroxylase	1.822377	denovo_WM_21:18:0.988	denovo_WM_21:-64:0.824
chr19	54663563	54663741	reg1000118.p1	12.500	+	DQ892220 DQ895417 DQ895418 TSC_hg19_v1_chr19_-_54663482 BC014986 NM_024316	-194	-	TSC_hg19_v1_chr19_+_54641477 BC016474 AK300434 AK160386	-22135	+	TSC_hg19_v1_chr19_+_54641468 NM_014516	-22205	+	DQ892181 DQ895377 AY263166 BC025323 TSC_hg19_v1_chr19_-_54676855 AK314973 AY236492 NM_001145303 NM_144686	13226	-	S82470 TSC_hg19_v1_chr19_-_54692218 AK293199 BC002512 EU016381	28594	-	TSC_hg19_v1_chr19_-_54693214 BC003164 BC015857	29578	-	DQ892220|LENG1|79165|leukocyte receptor cluster (LRC) member 1##DQ895417|LENG1|79165|leukocyte receptor cluster (LRC) member 1##DQ895418|LENG1|79165|leukocyte receptor cluster (LRC) member 1##BC014986|LENG1|79165|leukocyte receptor cluster (LRC) member 1##NM_024316|LENG1|79165|leukocyte receptor cluster (LRC) member 1##BC016474|CNOT3|4849|CCR4-NOT transcription complex, subunit 3##AK300434|CNOT3|4849|CCR4-NOT transcription complex, subunit 3##AK160386|CNOT3|4849|CCR4-NOT transcription complex, subunit 3##NM_014516|CNOT3|4849|CCR4-NOT transcription complex, subunit 3##DQ892181|TMC4|147798|transmembrane channel-like 4##DQ895377|TMC4|147798|transmembrane channel-like 4##AY263166|TMC4|147798|transmembrane channel-like 4##BC025323|TMC4|147798|transmembrane channel-like 4##AK314973|TMC4|147798|transmembrane channel-like 4##AY236492|TMC4|147798|transmembrane channel-like 4##NM_001145303|TMC4|147798|transmembrane channel-like 4##NM_144686|TMC4|147798|transmembrane channel-like 4##S82470|MBOAT7|79143|membrane bound O-acyltransferase domain containing 7##AK293199|MBOAT7|79143|membrane bound O-acyltransferase domain containing 7##BC002512|MBOAT7|79143|membrane bound O-acyltransferase domain containing 7##EU016381|MBOAT7|79143|membrane bound O-acyltransferase domain containing 7##BC003164|MBOAT7|79143|membrane bound O-acyltransferase domain containing 7##BC015857|MBOAT7|79143|membrane bound O-acyltransferase domain containing 7	1.34499	denovo_WM_21:19:0.616	denovo_WM_21:63:0.510	denovo_WM_21:-70:0.219
chr16	89557178	89557337	reg1000086.p2	12.492	+	BC052290 BC069013 BC041059 BC017437 TSC_hg19_v1_chr16_-_89556970 AY373756 NM_013275	-326	-	AK293862 NM_001242885	-169717	+	BC041585 TSC_hg19_v1_chr16_-_89351073	-206301	-	NM_003119 NM_199367 TSC_hg19_v1_chr16_+_89574810 BC036104 Y16610 BC007692 EU832769 GQ129312 AB527784	17557	+	TSC_hg19_v1_chr16_+_89627066 BC106058 NM_000977 NM_001243130 NM_001243131	69808	+	TSC_hg19_v1_chr16_+_89627089 BC093063 AK026501 AK093246 AK130964 AK290893 AK294655 AK308545 BC066320 D28432 X64707 AK025405 AK127579 AK130963 AK297198 BC007345 BC004954 BC006179 BC063378 BC007805 BC013078 BC014167 BC027463 BC010994 BC000851 BC020804 NM_033251 BC007563	69850	+	BC052290|ANKRD11|29123|ankyrin repeat domain 11##BC069013|ANKRD11|29123|ankyrin repeat domain 11##BC041059|ANKRD11|29123|ankyrin repeat domain 11##BC017437|ANKRD11|29123|ankyrin repeat domain 11##AY373756|ANKRD11|29123|ankyrin repeat domain 11##NM_013275|ANKRD11|29123|ankyrin repeat domain 11##AK293862|LOC100287036|100287036|uncharacterized LOC100287036##NM_001242885|LOC100287036|100287036|uncharacterized LOC100287036##BC041585|ANKRD11|29123|ankyrin repeat domain 11##NM_003119|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##NM_199367|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC036104|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##Y16610|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC007692|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##EU832769|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##GQ129312|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC106058|RPL13|6137|ribosomal protein L13##NM_000977|RPL13|6137|ribosomal protein L13##NM_001243130|RPL13|6137|ribosomal protein L13##NM_001243131|RPL13|6137|ribosomal protein L13##BC093063|RPL13|6137|ribosomal protein L13##AK026501|RPL13|6137|ribosomal protein L13##AK130964|RPL13|6137|ribosomal protein L13##AK290893|RPL13|6137|ribosomal protein L13##AK294655|RPL13|6137|ribosomal protein L13##AK308545|RPL13|6137|ribosomal protein L13##BC066320|RPL13|6137|ribosomal protein L13##D28432|RPL13|6137|ribosomal protein L13##X64707|RPL13|6137|ribosomal protein L13##AK025405|RPL13|6137|ribosomal protein L13##AK127579|RPL13|6137|ribosomal protein L13##AK130963|RPL13|6137|ribosomal protein L13##AK297198|RPL13|6137|ribosomal protein L13##BC007345|RPL13|6137|ribosomal protein L13##BC004954|RPL13|6137|ribosomal protein L13##BC006179|RPL13|6137|ribosomal protein L13##BC063378|RPL13|6137|ribosomal protein L13##BC007805|RPL13|6137|ribosomal protein L13##BC013078|RPL13|6137|ribosomal protein L13##BC014167|RPL13|6137|ribosomal protein L13##BC027463|RPL13|6137|ribosomal protein L13##BC010994|RPL13|6137|ribosomal protein L13##BC000851|RPL13|6137|ribosomal protein L13##BC020804|RPL13|6137|ribosomal protein L13##NM_033251|RPL13|6137|ribosomal protein L13##BC007563|RPL13|6137|ribosomal protein L13	0.055441	
chr17	57232597	57232775	reg1000119.p1	12.465	+	BC106003 AK022820 TSC_hg19_v1_chr17_-_57232539 AK056473 FJ648812 BC017873	-140	-	TSC_hg19_v1_chr17_-_57184207 AK294850 NM_001005207 NM_015294	-48465	-	TSC_hg19_v1_chr17_-_57184116 AK292459	-48547	-	NM_001100595 NM_182620	113	-	NM_018304	173	+	AK225380 TSC_hg19_v1_chr17_+_57233106 AK001891 AK225377 FJ161961 BC008669	434	+	BC106003|SKA2|348235|spindle and kinetochore associated complex subunit 2##AK022820|SKA2|348235|spindle and kinetochore associated complex subunit 2##AK056473|SKA2|348235|spindle and kinetochore associated complex subunit 2##FJ648812|SKA2|348235|spindle and kinetochore associated complex subunit 2##BC017873|SKA2|348235|spindle and kinetochore associated complex subunit 2##AK294850|TRIM37|4591|tripartite motif containing 37##NM_001005207|TRIM37|4591|tripartite motif containing 37##NM_015294|TRIM37|4591|tripartite motif containing 37##AK292459|TRIM37|4591|tripartite motif containing 37##NM_001100595|SKA2|348235|spindle and kinetochore associated complex subunit 2##NM_182620|SKA2|348235|spindle and kinetochore associated complex subunit 2##NM_018304|PRR11|55771|proline rich 11##AK225380|PRR11|55771|proline rich 11##AK001891|PRR11|55771|proline rich 11##AK225377|PRR11|55771|proline rich 11##FJ161961|PRR11|55771|proline rich 11##BC008669|PRR11|55771|proline rich 11	1.75918	denovo_WM_21:-56:0.789	denovo_WM_21:77:0.839
chr19	55973067	55973242	reg1000110.p1	12.441	+	NM_001136201 NM_001136202 NM_024710 TSC_hg19_v1_chr19_-_55973052	-99	-	AK311540 TSC_hg19_v1_chr19_-_55973007 AK027122	-145	-	BC017344 TSC_hg19_v1_chr19_-_55972980	-191	-	BC089449 NM_033113	14544	+	TSC_hg19_v1_chr19_+_55996577 NM_020378 AF086533 BC019079 AB038651	23418	+	TSC_hg19_v1_chr19_+_55999863 AK092577 AX747607 NM_001144950 NM_001195267	26710	+	NM_001136201|ISOC2|79763|isochorismatase domain containing 2##NM_001136202|ISOC2|79763|isochorismatase domain containing 2##NM_024710|ISOC2|79763|isochorismatase domain containing 2##AK311540|ISOC2|79763|isochorismatase domain containing 2##AK027122|ISOC2|79763|isochorismatase domain containing 2##BC017344|ISOC2|79763|isochorismatase domain containing 2##BC089449|ZNF628|89887|zinc finger protein 628##NM_033113|ZNF628|89887|zinc finger protein 628##NM_020378|NAT14|57106|N-acetyltransferase 14 (GCN5-related, putative)##AF086533|NAT14|57106|N-acetyltransferase 14 (GCN5-related, putative)##BC019079|NAT14|57106|N-acetyltransferase 14 (GCN5-related, putative)##AB038651|NAT14|57106|N-acetyltransferase 14 (GCN5-related, putative)##AK092577|SSC5D|284297|scavenger receptor cysteine rich domain containing (5 domains)##NM_001144950|SSC5D|284297|scavenger receptor cysteine rich domain containing (5 domains)##NM_001195267|SSC5D|284297|scavenger receptor cysteine rich domain containing (5 domains)	0.528174	denovo_WM_21:-78:0.203
chr19	17420202	17420342	reg1000162.p1	12.417	+	BC021801 NM_023937 TSC_hg19_v1_chr19_+_17416677 AB049652 BC000071	-3681	+	BC020173 BC039087 TSC_hg19_v1_chr19_-_17414209 BC007895 AK225140 AK315366 AK021805 AK225340 AK298251 NM_024527	-6090	-	AK303628 NM_152363	-27819	+	TSC_hg19_v1_chr19_+_17420345 NM_024050	9	+	TSC_hg19_v1_chr19_+_17420358 AY563006 DQ090952 BC000615	86	+	BC037307 TSC_hg19_v1_chr19_-_17445581 AB046843 NM_020959	25364	-	BC021801|MRPL34|64981|mitochondrial ribosomal protein L34##NM_023937|MRPL34|64981|mitochondrial ribosomal protein L34##AB049652|MRPL34|64981|mitochondrial ribosomal protein L34##BC000071|MRPL34|64981|mitochondrial ribosomal protein L34##BC020173|ABHD8|79575|abhydrolase domain containing 8##BC039087|ABHD8|79575|abhydrolase domain containing 8##BC007895|ABHD8|79575|abhydrolase domain containing 8##AK225140|ABHD8|79575|abhydrolase domain containing 8##AK315366|ABHD8|79575|abhydrolase domain containing 8##AK021805|ABHD8|79575|abhydrolase domain containing 8##AK225340|ABHD8|79575|abhydrolase domain containing 8##AK298251|ABHD8|79575|abhydrolase domain containing 8##NM_024527|ABHD8|79575|abhydrolase domain containing 8##AK303628|ANKLE1|126549|ankyrin repeat and LEM domain containing 1##NM_152363|ANKLE1|126549|ankyrin repeat and LEM domain containing 1##NM_024050|DDA1|79016|DET1 and DDB1 associated 1##AY563006|DDA1|79016|DET1 and DDB1 associated 1##DQ090952|DDA1|79016|DET1 and DDB1 associated 1##BC000615|DDA1|79016|DET1 and DDB1 associated 1##BC037307|ANO8|57719|anoctamin 8##AB046843|ANO8|57719|anoctamin 8##NM_020959|ANO8|57719|anoctamin 8	1.684416	denovo_WM_21:0:0.754	denovo_WM_21:-29:0.792
chr17	73452571	73452700	reg1000163.p2	12.383	+	NM_002086 NM_203506 TSC_hg19_v1_chr17_-_73401791	-50832	-	TSC_hg19_v1_chr17_-_73401781 AK315565	-50856	-	TSC_hg19_v1_chr17_-_73401738 BC000631	-50901	-	NM_014738 TSC_hg19_v1_chr17_+_73452737 AK308160 BC042942 AK304819 D83779 BC045540	103	+	AK316060 TSC_hg19_v1_chr17_+_73472617 AK294526 CR936809	19967	+	AK300354 NM_001142643 AK315936	53306	-	NM_002086|GRB2|2885|growth factor receptor-bound protein 2##NM_203506|GRB2|2885|growth factor receptor-bound protein 2##AK315565|GRB2|2885|growth factor receptor-bound protein 2##BC000631|GRB2|2885|growth factor receptor-bound protein 2##NM_014738|KIAA0195|9772|KIAA0195##AK308160|KIAA0195|9772|KIAA0195##BC042942|KIAA0195|9772|KIAA0195##AK304819|KIAA0195|9772|KIAA0195##D83779|KIAA0195|9772|KIAA0195##BC045540|KIAA0195|9772|KIAA0195##AK316060|KIAA0195|9772|KIAA0195##AK294526|KIAA0195|9772|KIAA0195##CR936809|KIAA0195|9772|KIAA0195##AK300354|CASKIN2|57513|CASK interacting protein 2##NM_001142643|CASKIN2|57513|CASK interacting protein 2##AK315936|CASKIN2|57513|CASK interacting protein 2	1.47981	denovo_WM_21:-19:0.985	denovo_WM_21:20:0.495
chr1	150669761	150669920	reg1000084.p2	12.363	+	AJ296153 TSC_hg19_v1_chr1_-_150669631 AK300635 AK315594 NM_018178	-255	-	TSC_hg19_v1_chr1_-_150602089 NM_004436 NM_207042 NM_207043 NM_207044 NM_207168	-67747	-	TSC_hg19_v1_chr1_-_150602054 AF157509 AF157510 AF067170 CR749580 BC068544 X99906 AK057673 AK001981	-67781	-	AK098633 BC033014 AK097390 BC047406 AL136755 AY626344 NM_001199829 NM_032132	23502	-	TSC_hg19_v1_chr1_-_150738233 BC002642	68392	-	TSC_hg19_v1_chr1_-_150738255 AK301472 AK314482	68428	-	AJ296153|GOLPH3L|55204|golgi phosphoprotein 3-like##AK300635|GOLPH3L|55204|golgi phosphoprotein 3-like##AK315594|GOLPH3L|55204|golgi phosphoprotein 3-like##NM_018178|GOLPH3L|55204|golgi phosphoprotein 3-like##NM_004436|ENSA|2029|endosulfine alpha##NM_207042|ENSA|2029|endosulfine alpha##NM_207043|ENSA|2029|endosulfine alpha##NM_207044|ENSA|2029|endosulfine alpha##NM_207168|ENSA|2029|endosulfine alpha##AF157509|ENSA|2029|endosulfine alpha##AF157510|ENSA|2029|endosulfine alpha##AF067170|ENSA|2029|endosulfine alpha##CR749580|ENSA|2029|endosulfine alpha##BC068544|ENSA|2029|endosulfine alpha##X99906|ENSA|2029|endosulfine alpha##AK057673|ENSA|2029|endosulfine alpha##AK001981|ENSA|2029|endosulfine alpha##AK098633|HORMAD1|84072|HORMA domain containing 1##BC033014|HORMAD1|84072|HORMA domain containing 1##AK097390|HORMAD1|84072|HORMA domain containing 1##BC047406|HORMAD1|84072|HORMA domain containing 1##AL136755|HORMAD1|84072|HORMA domain containing 1##AY626344|HORMAD1|84072|HORMA domain containing 1##NM_001199829|HORMAD1|84072|HORMA domain containing 1##NM_032132|HORMAD1|84072|HORMA domain containing 1##BC002642|CTSS|1520|cathepsin S##AK301472|CTSS|1520|cathepsin S##AK314482|CTSS|1520|cathepsin S	1.299473	denovo_WM_21:-16:0.333	denovo_WM_21:47:0.966
chr22	20004397	20004514	reg1000183.p1	12.355	+	TSC_hg19_v1_chr22_-_20004347 NM_001670 U51269	-132	-	AB462972 BT007125 CR456997 CU012983 CU013271 CU680120 DQ893411 DQ896732 FJ410132 TSC_hg19_v1_chr22_+_19950078 NM_007310 EF217321 EF217322 EF212883 FJ410131 CU674210	-54273	+	NM_001135162 BC100018	-65407	+	TSC_hg19_v1_chr22_+_20008632 AK316056 BC041339 NM_152906 AK301054 AK301366 AK311676	4162	+	AK297922 AK298593 TSC_hg19_v1_chr22_+_20008634 AK297075 AK316020 AK092484 AX747566 CR627452	4188	+	TSC_hg19_v1_chr22_+_20067801 NM_001190326 NM_022720 AK313357 BC037564 BC009984	63327	+	NM_001670|ARVCF|421|armadillo repeat gene deleted in velocardiofacial syndrome##U51269|ARVCF|421|armadillo repeat gene deleted in velocardiofacial syndrome##BT007125|COMT|1312|catechol-O-methyltransferase##CR456997|COMT|1312|catechol-O-methyltransferase##CU012983|COMT|1312|catechol-O-methyltransferase##CU013271|COMT|1312|catechol-O-methyltransferase##DQ893411|COMT|1312|catechol-O-methyltransferase##DQ896732|COMT|1312|catechol-O-methyltransferase##FJ410132|COMT|1312|catechol-O-methyltransferase##NM_007310|COMT|1312|catechol-O-methyltransferase##EF217321|COMT|1312|catechol-O-methyltransferase##EF217322|COMT|1312|catechol-O-methyltransferase##FJ410131|COMT|1312|catechol-O-methyltransferase##NM_001135162|COMT|1312|catechol-O-methyltransferase##BC100018|COMT|1312|catechol-O-methyltransferase##AK316056|C22orf25|128989|chromosome 22 open reading frame 25##BC041339|C22orf25|128989|chromosome 22 open reading frame 25##NM_152906|C22orf25|128989|chromosome 22 open reading frame 25##AK301054|C22orf25|128989|chromosome 22 open reading frame 25##AK301366|C22orf25|128989|chromosome 22 open reading frame 25##AK311676|C22orf25|128989|chromosome 22 open reading frame 25##AK297922|C22orf25|128989|chromosome 22 open reading frame 25##AK298593|C22orf25|128989|chromosome 22 open reading frame 25##AK297075|C22orf25|128989|chromosome 22 open reading frame 25##AK316020|C22orf25|128989|chromosome 22 open reading frame 25##AK092484|C22orf25|128989|chromosome 22 open reading frame 25##CR627452|C22orf25|128989|chromosome 22 open reading frame 25##NM_001190326|DGCR8|54487|DiGeorge syndrome critical region gene 8##NM_022720|DGCR8|54487|DiGeorge syndrome critical region gene 8##AK313357|DGCR8|54487|DiGeorge syndrome critical region gene 8##BC037564|DGCR8|54487|DiGeorge syndrome critical region gene 8##BC009984|DGCR8|54487|DiGeorge syndrome critical region gene 8	0.926038	denovo_WM_21:-46:0.904
chr8	42010303	42010433	reg1000113.p1	12.354	+	U47742 BC142659 BC142959 NM_001099412 NM_001099413 NM_006766 TSC_hg19_v1_chr8_-_41909506	-100869	-	TSC_hg19_v1_chr8_-_41754260 AB209418 NM_001142446	-256058	-	AK026601 TSC_hg19_v1_chr8_+_41685847	-324543	+	NM_001134296 NM_006803 AK315228 BX648354 BC056398 BX648390 D38293	165	+	X07393 M15518 BC007231 BC002795 BC013968 BC018636 TSC_hg19_v1_chr8_-_42065084 AK297738 AK297937 AK299205 AK300984 AK313342 BC095403 X13097 X02901	54720	-	AK289387 AK290575 NM_000930 NM_033011 TSC_hg19_v1_chr8_-_42065195	54826	-	U47742|KAT6A|7994|K(lysine) acetyltransferase 6A##BC142659|KAT6A|7994|K(lysine) acetyltransferase 6A##BC142959|KAT6A|7994|K(lysine) acetyltransferase 6A##NM_001099412|KAT6A|7994|K(lysine) acetyltransferase 6A##NM_001099413|KAT6A|7994|K(lysine) acetyltransferase 6A##NM_006766|KAT6A|7994|K(lysine) acetyltransferase 6A##AB209418|ANK1|286|ankyrin 1, erythrocytic##NM_001142446|ANK1|286|ankyrin 1, erythrocytic##NM_001134296|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##NM_006803|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##AK315228|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##BX648354|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##BC056398|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##BX648390|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##D38293|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##X07393|PLAT|5327|plasminogen activator, tissue##M15518|PLAT|5327|plasminogen activator, tissue##BC007231|PLAT|5327|plasminogen activator, tissue##BC002795|PLAT|5327|plasminogen activator, tissue##BC013968|PLAT|5327|plasminogen activator, tissue##BC018636|PLAT|5327|plasminogen activator, tissue##AK297738|PLAT|5327|plasminogen activator, tissue##AK297937|PLAT|5327|plasminogen activator, tissue##AK299205|PLAT|5327|plasminogen activator, tissue##AK300984|PLAT|5327|plasminogen activator, tissue##AK313342|PLAT|5327|plasminogen activator, tissue##BC095403|PLAT|5327|plasminogen activator, tissue##X13097|PLAT|5327|plasminogen activator, tissue##X02901|PLAT|5327|plasminogen activator, tissue##AK289387|PLAT|5327|plasminogen activator, tissue##AK290575|PLAT|5327|plasminogen activator, tissue##NM_000930|PLAT|5327|plasminogen activator, tissue##NM_033011|PLAT|5327|plasminogen activator, tissue	1.201809	denovo_WM_21:24:0.804
chr3	114866146	114866331	reg1000144.p1	12.325	+	TSC_hg19_v1_chr3_-_114866114 BC010934 BX647778 BX648237 NM_015642	-124	-	BC090936 NM_001164343	-75998	-	AK225788 NM_001164344 NM_001164345	-388118	-	NM_001130064 NM_002045	475912	+	TSC_hg19_v1_chr3_+_115342501 AK289699 M25667 AK313658 BX648458 AK290100 BC007936 AM392759 AM393509 DQ893244 DQ896574 AB463057 BT019771 BT019810	476181	+	AK315286 TSC_hg19_v1_chr3_-_116164338	1298093	-	BC010934|ZBTB20|26137|zinc finger and BTB domain containing 20##BX647778|ZBTB20|26137|zinc finger and BTB domain containing 20##BX648237|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_015642|ZBTB20|26137|zinc finger and BTB domain containing 20##BC090936|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164343|ZBTB20|26137|zinc finger and BTB domain containing 20##AK225788|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164344|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164345|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001130064|GAP43|2596|growth associated protein 43##NM_002045|GAP43|2596|growth associated protein 43##AK289699|GAP43|2596|growth associated protein 43##M25667|GAP43|2596|growth associated protein 43##AK313658|GAP43|2596|growth associated protein 43##BX648458|GAP43|2596|growth associated protein 43##AK290100|GAP43|2596|growth associated protein 43##BC007936|GAP43|2596|growth associated protein 43##AM392759|GAP43|2596|growth associated protein 43##AM393509|GAP43|2596|growth associated protein 43##DQ893244|GAP43|2596|growth associated protein 43##DQ896574|GAP43|2596|growth associated protein 43##BT019771|GAP43|2596|growth associated protein 43##BT019810|GAP43|2596|growth associated protein 43##AK315286|LSAMP|4045|limbic system-associated membrane protein	1.008496	denovo_WM_21:-14:0.986
chr4	331425	331558	reg1000146.p1	12.296	+	AK302099 NM_001137608	-41548	-	TSC_hg19_v1_chr4_+_124389 AK096662 AL833758 BC104026 BC104028	-207117	+	TSC_hg19_v1_chr4_+_53214 AK300505 AK311343 BC036110 BC043151 AK301848 AK309855 AK056302 BC020836 BC009008 BX537887 NM_182524	-278267	+	TSC_hg19_v1_chr4_+_331602 NM_003441	104	+	TSC_hg19_v1_chr4_+_331608 BC036854 BC057244 L15309 BC074853	179	+	BC098116 BC098259 BC098291 BC099730 TSC_hg19_v1_chr4_-_467940 BC040413 BC036795 BC060316 BC065035 AK024359 AK303674	136412	-	AK302099|ZNF732|654254|zinc finger protein 732##NM_001137608|ZNF732|654254|zinc finger protein 732##AK096662|ZNF718|255403|zinc finger protein 718##AL833758|ZNF718|255403|zinc finger protein 718##BC104026|ZNF718|255403|zinc finger protein 718##BC104028|ZNF718|255403|zinc finger protein 718##AK300505|ZNF595|152687|zinc finger protein 595##BC036110|ZNF595|152687|zinc finger protein 595##BC043151|ZNF595|152687|zinc finger protein 595##AK301848|ZNF595|152687|zinc finger protein 595##AK309855|ZNF595|152687|zinc finger protein 595##AK056302|ZNF595|152687|zinc finger protein 595##BC020836|ZNF718|255403|zinc finger protein 718##BX537887|ZNF595|152687|zinc finger protein 595##NM_182524|ZNF595|152687|zinc finger protein 595##NM_003441|ZNF141|7700|zinc finger protein 141##BC036854|ZNF141|7700|zinc finger protein 141##BC057244|ZNF141|7700|zinc finger protein 141##L15309|ZNF141|7700|zinc finger protein 141##BC074853|ZNF141|7700|zinc finger protein 141##BC098116|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC098259|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC098291|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC099730|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC040413|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC060316|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##AK024359|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##AK303674|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene	0.889579	denovo_WM_21:34:0.890
chr6	136571472	136571636	reg1000165.p1	12.291	+	TSC_hg19_v1_chr6_-_136571414 AK292303 BC063688 AK125758 NM_001099286 NM_138419	-125	-	AK290582 AB038040 NM_018945 TSC_hg19_v1_chr6_+_136172838 AJ251860 BC070267	-398703	+	BC127001 BC127000 TSC_hg19_v1_chr6_+_135818964 BC040979	-752590	+	BC078160 BC063846 TSC_hg19_v1_chr6_-_136610926 BX649160 BC016682	39356	-	BC132780 BC144281 BC144282 BC144299 TSC_hg19_v1_chr6_-_136610938 BC047887 BC056894 D79986 NM_001077440 NM_001077441 NM_014739	39406	-	AK299355 NM_001198615	216458	-	AK292303|FAM54A|113115|family with sequence similarity 54, member A##BC063688|FAM54A|113115|family with sequence similarity 54, member A##AK125758|FAM54A|113115|family with sequence similarity 54, member A##NM_001099286|FAM54A|113115|family with sequence similarity 54, member A##NM_138419|FAM54A|113115|family with sequence similarity 54, member A##AK290582|PDE7B|27115|phosphodiesterase 7B##AB038040|PDE7B|27115|phosphodiesterase 7B##NM_018945|PDE7B|27115|phosphodiesterase 7B##AJ251860|PDE7B|27115|phosphodiesterase 7B##BC070267|PDE7B|27115|phosphodiesterase 7B##BC127001|LINC00271|100131814|long intergenic non-protein coding RNA 271##BC127000|LINC00271|100131814|long intergenic non-protein coding RNA 271##BC040979|LINC00271|100131814|long intergenic non-protein coding RNA 271##BC078160|BCLAF1|9774|BCL2-associated transcription factor 1##BC063846|BCLAF1|9774|BCL2-associated transcription factor 1##BX649160|BCLAF1|9774|BCL2-associated transcription factor 1##BC016682|BCLAF1|9774|BCL2-associated transcription factor 1##BC132780|BCLAF1|9774|BCL2-associated transcription factor 1##BC144281|BCLAF1|9774|BCL2-associated transcription factor 1##BC144282|BCLAF1|9774|BCL2-associated transcription factor 1##BC144299|BCLAF1|9774|BCL2-associated transcription factor 1##BC047887|BCLAF1|9774|BCL2-associated transcription factor 1##BC056894|BCLAF1|9774|BCL2-associated transcription factor 1##D79986|BCLAF1|9774|BCL2-associated transcription factor 1##NM_001077440|BCLAF1|9774|BCL2-associated transcription factor 1##NM_001077441|BCLAF1|9774|BCL2-associated transcription factor 1##NM_014739|BCLAF1|9774|BCL2-associated transcription factor 1##AK299355|MAP7|9053|microtubule-associated protein 7##NM_001198615|MAP7|9053|microtubule-associated protein 7	1.947841	denovo_WM_21:-16:0.978	denovo_WM_21:64:0.970
chr2	232645999	232646133	reg1000159.p1	12.248	+	BT007278 CR456980 AB464015 DQ893223 DQ896553 AJ001626 TSC_hg19_v1_chr2_-_232645990 BC007831 AF022912 NM_002601 BC001054 AK311623	-141	-	BC001624 BC098420 BC070480 BC003510 BC051265 BC071879 BC071647 TSC_hg19_v1_chr2_+_232573265 M26708 M14483 BC066905 M14794 DQ892963 DQ896210 AF170294 AF348514 AY169282	-72734	+	TSC_hg19_v1_chr2_+_232573239 NM_001099285 NM_002823 BC022433 AK223605 AK314106 M14630 BC034921	-72832	+	TSC_hg19_v1_chr2_+_232646442 AK307486	371	+	TSC_hg19_v1_chr2_+_232651154 AK024273 AK222879 BC091493 AK022674 NM_022730	5050	+	BC069120 AB464626 BC105065 BC105067 NM_024409 TSC_hg19_v1_chr2_-_232791107	144967	-	BT007278|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##CR456980|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##DQ893223|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##DQ896553|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##AJ001626|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##BC007831|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##AF022912|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##NM_002601|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##BC001054|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##BC098420|PTMA|5757|prothymosin, alpha##BC070480|PTMA|5757|prothymosin, alpha##BC003510|PTMA|5757|prothymosin, alpha##BC051265|PTMA|5757|prothymosin, alpha##BC071879|PTMA|5757|prothymosin, alpha##BC071647|PTMA|5757|prothymosin, alpha##M26708|PTMA|5757|prothymosin, alpha##M14483|PTMA|5757|prothymosin, alpha##BC066905|PTMA|5757|prothymosin, alpha##M14794|PTMA|5757|prothymosin, alpha##DQ892963|PTMA|5757|prothymosin, alpha##DQ896210|PTMA|5757|prothymosin, alpha##AF348514|PTMA|5757|prothymosin, alpha##AY169282|PTMA|5757|prothymosin, alpha##NM_001099285|PTMA|5757|prothymosin, alpha##NM_002823|PTMA|5757|prothymosin, alpha##BC022433|PTMA|5757|prothymosin, alpha##AK223605|PTMA|5757|prothymosin, alpha##AK314106|PTMA|5757|prothymosin, alpha##M14630|PTMA|5757|prothymosin, alpha##BC034921|PTMA|5757|prothymosin, alpha##AK307486|COPS7B|64708|COP9 constitutive photomorphogenic homolog subunit 7B (Arabidopsis)##AK024273|COPS7B|64708|COP9 constitutive photomorphogenic homolog subunit 7B (Arabidopsis)##AK222879|COPS7B|64708|COP9 constitutive photomorphogenic homolog subunit 7B (Arabidopsis)##BC091493|COPS7B|64708|COP9 constitutive photomorphogenic homolog subunit 7B (Arabidopsis)##AK022674|COPS7B|64708|COP9 constitutive photomorphogenic homolog subunit 7B (Arabidopsis)##NM_022730|COPS7B|64708|COP9 constitutive photomorphogenic homolog subunit 7B (Arabidopsis)##BC069120|NPPC|4880|natriuretic peptide C##BC105065|NPPC|4880|natriuretic peptide C##BC105067|NPPC|4880|natriuretic peptide C##NM_024409|NPPC|4880|natriuretic peptide C	0.828483	denovo_WM_21:-29:0.767
chr20	17662929	17663062	reg1000143.p1	12.242	+	TSC_hg19_v1_chr20_-_17662888 AB037819 BC009700 NM_001042576 NM_004587	-112	-	BC128578 BC128577 TSC_hg19_v1_chr20_-_17662793 AF006751	-230	-	TSC_hg19_v1_chr20_-_17641123 AB287347 AB384598	-21859	-	NM_001159495	11324	+	BC054871 NM_001014977 NM_178477 BC062735	17603	+	BT007191 AB464237 TSC_hg19_v1_chr20_-_17949155 AK223308 AK001793 AK129505 NM_014426 BC093623 BC093980 BC143274	286219	-	AB037819|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##BC009700|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##NM_001042576|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##NM_004587|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##BC128578|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##BC128577|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##AF006751|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##AB287347|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##NM_001159495|BANF2|140836|barrier to autointegration factor 2##BC054871|BANF2|140836|barrier to autointegration factor 2##NM_001014977|BANF2|140836|barrier to autointegration factor 2##NM_178477|BANF2|140836|barrier to autointegration factor 2##BC062735|BANF2|140836|barrier to autointegration factor 2##BT007191|SNX5|27131|sorting nexin 5##AK223308|SNX5|27131|sorting nexin 5##AK001793|SNX5|27131|sorting nexin 5##AK129505|SNX5|27131|sorting nexin 5##NM_014426|SNX5|27131|sorting nexin 5##BC093623|SNX5|27131|sorting nexin 5##BC093980|SNX5|27131|sorting nexin 5##BC143274|SNX5|27131|sorting nexin 5	1.865954	denovo_WM_21:-15:0.904	denovo_WM_21:90:0.946
chr1	120838359	120838543	reg1000034.p1	12.225	+	TSC_hg19_v1_chr1_-_120612318 NM_001200001 NM_024408	-226136	-	TSC_hg19_v1_chr1_-_120612272 BC071562	-226185	-	TSC_hg19_v1_chr1_-_120612211 AK307843	-226245	-	NM_001100910	553	+	L03419 L03420 TSC_hg19_v1_chr1_-_120935918 BC110416 AK308886	97458	-	AK291502 AK307244 AK311502 NM_001004340 NM_001017986 NM_001244910 TSC_hg19_v1_chr1_-_120935945	97501	-	NM_001200001|NOTCH2|4853|notch 2##NM_024408|NOTCH2|4853|notch 2##BC071562|NOTCH2|4853|notch 2##AK307843|NOTCH2|4853|notch 2##NM_001100910|FAM72B|653820|family with sequence similarity 72, member B##L03419|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##L03420|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##BC110416|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##AK308886|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##AK291502|FCGR1A|2209|Fc fragment of IgG, high affinity Ia, receptor (CD64)##AK307244|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##AK311502|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001004340|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001017986|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001244910|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)	0.965236	denovo_WM_21:-30:0.965
chr16	30381966	30382151	reg1000056.p1	12.181	+	TSC_hg19_v1_chr16_-_30381505 AB527435 BC015680 NM_015527	-534	-	NM_006110 TSC_hg19_v1_chr16_-_30366682	-15376	-	AK315708 TSC_hg19_v1_chr16_-_30366603 BC000495 BC001947 AF104222	-15458	-	AK314082 M21812 X57543 BC012571 BX649054 NM_013292 TSC_hg19_v1_chr16_+_30386122 AF363061	4052	+	NM_001214906 NM_001214907	7575	+	BC012161 AK301045 AF085235 AY034176 TSC_hg19_v1_chr16_-_30393883	11818	-	NM_015527|TBC1D10B|26000|TBC1 domain family, member 10B##NM_006110|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##AK315708|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##BC000495|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##BC001947|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##AF104222|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##AK314082|MYLPF|29895|myosin light chain, phosphorylatable, fast skeletal muscle##M21812|MYLPF|29895|myosin light chain, phosphorylatable, fast skeletal muscle##X57543|MYLPF|29895|myosin light chain, phosphorylatable, fast skeletal muscle##BC012571|MYLPF|29895|myosin light chain, phosphorylatable, fast skeletal muscle##BX649054|MYLPF|29895|myosin light chain, phosphorylatable, fast skeletal muscle##NM_013292|MYLPF|29895|myosin light chain, phosphorylatable, fast skeletal muscle##AF363061|MYLPF|29895|myosin light chain, phosphorylatable, fast skeletal muscle##NM_001214906|ZNF48|197407|zinc finger protein 48##NM_001214907|ZNF48|197407|zinc finger protein 48##BC012161|SEPT1|1731|septin 1##AK301045|SEPT1|1731|septin 1##AF085235|SEPT1|1731|septin 1##AY034176|SEPT1|1731|septin 1	1.955914	denovo_WM_21:1:0.755	denovo_WM_21:33:0.220	denovo_WM_21:-47:0.981
chr15	90895365	90895490	reg1000184.p1	12.175	+	TSC_hg19_v1_chr15_+_90808921 AB029315 NM_001033088 AL834503 BC007222 AL360142 AK312641 BC017192 BC019023 AF242770 AL355700 BC009389 BC096824 AF225423	-86507	+	TSC_hg19_v1_chr15_+_90792763 BC036668 NM_001029964 AK127965 BC052201	-102652	+	TSC_hg19_v1_chr15_+_90777469 BC127821 NM_001013657	-117953	+	AK289385 NM_001004309 BC067279 CR749343	96	+	BC151834 D29640 TSC_hg19_v1_chr15_+_90931449	36027	+	TSC_hg19_v1_chr15_+_90931479 NM_003870	36050	+	AB029315|NGRN|51335|neugrin, neurite outgrowth associated##NM_001033088|NGRN|51335|neugrin, neurite outgrowth associated##AL834503|NGRN|51335|neugrin, neurite outgrowth associated##BC007222|NGRN|51335|neugrin, neurite outgrowth associated##AL360142|NGRN|51335|neugrin, neurite outgrowth associated##AK312641|NGRN|51335|neugrin, neurite outgrowth associated##BC017192|NGRN|51335|neugrin, neurite outgrowth associated##BC019023|NGRN|51335|neugrin, neurite outgrowth associated##AF242770|NGRN|51335|neugrin, neurite outgrowth associated##AL355700|NGRN|51335|neugrin, neurite outgrowth associated##BC009389|NGRN|51335|neugrin, neurite outgrowth associated##BC096824|NGRN|51335|neugrin, neurite outgrowth associated##AF225423|NGRN|51335|neugrin, neurite outgrowth associated##BC036668|TTLL13|440307|tubulin tyrosine ligase-like family, member 13##NM_001029964|TTLL13|440307|tubulin tyrosine ligase-like family, member 13##AK127965|TTLL13|440307|tubulin tyrosine ligase-like family, member 13##BC127821|C15orf58|390637|chromosome 15 open reading frame 58##NM_001013657|C15orf58|390637|chromosome 15 open reading frame 58##AK289385|ZNF774|342132|zinc finger protein 774##NM_001004309|ZNF774|342132|zinc finger protein 774##BC067279|ZNF774|342132|zinc finger protein 774##CR749343|ZNF774|342132|zinc finger protein 774##BC151834|IQGAP1|8826|IQ motif containing GTPase activating protein 1##D29640|IQGAP1|8826|IQ motif containing GTPase activating protein 1##NM_003870|IQGAP1|8826|IQ motif containing GTPase activating protein 1	0.774122	denovo_WM_21:28:0.774
chr19	39340963	39341147	reg1000064.p2	12.175	+	AB587509 TSC_hg19_v1_chr19_-_39340622 AB044547 NM_001533	-430	-	AK298384 TSC_hg19_v1_chr19_-_39340578	-479	-	TSC_hg19_v1_chr19_-_39340551 AK313652 BC069184	-504	-	TSC_hg19_v1_chr19_-_39342988 AK292115 NM_001005335 AK301062	1921	-	TSC_hg19_v1_chr19_-_39368901 AK127808 AK126119 AK298327 NM_001195833 NM_198445	27855	-	TSC_hg19_v1_chr19_+_39390332 NM_001243116 AB362577	49246	+	AB044547|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##NM_001533|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AK298384|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AK313652|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##BC069184|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AK292115|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##NM_001005335|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AK301062|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AK127808|RINL|126432|Ras and Rab interactor-like##AK126119|RINL|126432|Ras and Rab interactor-like##AK298327|RINL|126432|Ras and Rab interactor-like##NM_001195833|RINL|126432|Ras and Rab interactor-like##NM_198445|RINL|126432|Ras and Rab interactor-like##NM_001243116|NFKBIB|4793|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta	1.520506	denovo_WM_21:51:0.699	denovo_WM_21:-90:0.821	denovo_WM_21:113:0.979
chr19	41082647	41082774	reg1000187.p1	12.137	+	TSC_hg19_v1_chr19_+_41036433 AK309418	-46279	+	TSC_hg19_v1_chr19_+_41036379 AF311856 NM_025213	-46330	+	AF082075 AF311855 NM_020971	-109623	+	TSC_hg19_v1_chr19_+_41082760 NM_138392 AF258553 AK075057 AK300819	39	+	TSC_hg19_v1_chr19_+_41082789 BC022855	78	+	AK312748 TSC_hg19_v1_chr19_+_41082792	82	+	AK309418|SPTBN4|57731|spectrin, beta, non-erythrocytic 4##AF311856|SPTBN4|57731|spectrin, beta, non-erythrocytic 4##NM_025213|SPTBN4|57731|spectrin, beta, non-erythrocytic 4##AF082075|SPTBN4|57731|spectrin, beta, non-erythrocytic 4##AF311855|SPTBN4|57731|spectrin, beta, non-erythrocytic 4##NM_020971|SPTBN4|57731|spectrin, beta, non-erythrocytic 4##NM_138392|SHKBP1|92799|SH3KBP1 binding protein 1##AF258553|SHKBP1|92799|SH3KBP1 binding protein 1##AK075057|SHKBP1|92799|SH3KBP1 binding protein 1##AK300819|SHKBP1|92799|SH3KBP1 binding protein 1##BC022855|SHKBP1|92799|SH3KBP1 binding protein 1##AK312748|SHKBP1|92799|SH3KBP1 binding protein 1	0.067628	
chr1	10458961	10459090	reg1000188.p1	12.121	+	TSC_hg19_v1_chr1_+_10270680 AK308121 NM_015074 NM_183416 AF257176 AY139835	-188254	+	AB014584 TSC_hg19_v1_chr1_+_10093218	-365812	+	TSC_hg19_v1_chr1_+_10093015 AB028839 NM_001105562 NM_006048	-366010	+	NM_002631 TSC_hg19_v1_chr1_+_10459125 AK300952 AK290404 AK296889 AK303898 AK304423 BC000368 U30255 AB463169 AK298830	104	+	AF521016 NM_198544 NM_199006 NM_199294	31133	+	TSC_hg19_v1_chr1_+_10490434 AF516753 BC029430	31468	+	AK308121|KIF1B|23095|kinesin family member 1B##NM_015074|KIF1B|23095|kinesin family member 1B##NM_183416|KIF1B|23095|kinesin family member 1B##AF257176|KIF1B|23095|kinesin family member 1B##AY139835|KIF1B|23095|kinesin family member 1B##AB014584|UBE4B|10277|ubiquitination factor E4B##AB028839|UBE4B|10277|ubiquitination factor E4B##NM_001105562|UBE4B|10277|ubiquitination factor E4B##NM_006048|UBE4B|10277|ubiquitination factor E4B##NM_002631|PGD|5226|phosphogluconate dehydrogenase##AK300952|PGD|5226|phosphogluconate dehydrogenase##AK290404|PGD|5226|phosphogluconate dehydrogenase##AK296889|PGD|5226|phosphogluconate dehydrogenase##AK303898|PGD|5226|phosphogluconate dehydrogenase##AK304423|PGD|5226|phosphogluconate dehydrogenase##BC000368|PGD|5226|phosphogluconate dehydrogenase##U30255|PGD|5226|phosphogluconate dehydrogenase##AK298830|PGD|5226|phosphogluconate dehydrogenase##AF521016|APITD1-CORT|100526739|APITD1-CORT readthrough##NM_198544|APITD1-CORT|100526739|APITD1-CORT readthrough##NM_199006|APITD1-CORT|100526739|APITD1-CORT readthrough##NM_199294|APITD1|378708|apoptosis-inducing, TAF9-like domain 1##AF516753|APITD1-CORT|100526739|APITD1-CORT readthrough##BC029430|APITD1|378708|apoptosis-inducing, TAF9-like domain 1	0.325263	denovo_WM_21:29:0.325
chr1	33502509	33502643	reg1000135.p1	12.121	+	TSC_hg19_v1_chr1_-_33502485 NM_001199199 NM_001625 NM_013411	-76	-	AB005622 TSC_hg19_v1_chr1_-_33502470	-101	-	TSC_hg19_v1_chr1_-_33502465 AB005621	-110	-	TSC_hg19_v1_chr1_+_33546755 BC028128 NM_052998 AK095127 AL832640 AK057051 AK315677 AY325129 BC010449	44157	+	TSC_hg19_v1_chr1_-_33647643 AX775827 AX775829 AX776017 AK122896 NM_018207	145072	-	TSC_hg19_v1_chr1_+_33722167 NM_152493	219589	+	NM_001199199|AK2|204|adenylate kinase 2##NM_001625|AK2|204|adenylate kinase 2##NM_013411|AK2|204|adenylate kinase 2##AB005622|AK2|204|adenylate kinase 2##AB005621|AK2|204|adenylate kinase 2##BC028128|ADC|113451|arginine decarboxylase##NM_052998|ADC|113451|arginine decarboxylase##AK095127|ADC|113451|arginine decarboxylase##AL832640|ADC|113451|arginine decarboxylase##AK057051|ADC|113451|arginine decarboxylase##AK315677|ADC|113451|arginine decarboxylase##AY325129|ADC|113451|arginine decarboxylase##BC010449|ADC|113451|arginine decarboxylase##AK122896|TRIM62|55223|tripartite motif containing 62##NM_018207|TRIM62|55223|tripartite motif containing 62##NM_152493|ZNF362|149076|zinc finger protein 362	0.777662	denovo_WM_21:58:0.778
chr22	39101512	39101696	reg1000132.p2	12.068	+	CR456923 CU677177 CU013023 CU013311 CR456473 AK291827 BC015026 D31884 TSC_hg19_v1_chr22_-_39096285 NM_014876	-5380	-	AK312076 TSC_hg19_v1_chr22_+_39077979 CU013025 CU013313 DQ893045 DQ896289	-23623	+	TSC_hg19_v1_chr22_+_39077977 BC009363 CR456475	-23628	+	NM_004286 TSC_hg19_v1_chr22_+_39101925	261	+	TSC_hg19_v1_chr22_+_39101984 EU831484 EU831571 BC014075 AB385030 CR456501 CU013098 CU013386 U87964	423	+	AK304188 TSC_hg19_v1_chr22_-_39150957 AK295787	49379	-	CR456923|JOSD1|9929|Josephin domain containing 1##CU013023|JOSD1|9929|Josephin domain containing 1##CU013311|JOSD1|9929|Josephin domain containing 1##CR456473|JOSD1|9929|Josephin domain containing 1##AK291827|JOSD1|9929|Josephin domain containing 1##BC015026|JOSD1|9929|Josephin domain containing 1##D31884|JOSD1|9929|Josephin domain containing 1##NM_014876|JOSD1|9929|Josephin domain containing 1##AK312076|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##CU013025|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##CU013313|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##DQ893045|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##DQ896289|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##BC009363|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##CR456475|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##NM_004286|GTPBP1|9567|GTP binding protein 1##EU831484|GTPBP1|9567|GTP binding protein 1##EU831571|GTPBP1|9567|GTP binding protein 1##BC014075|GTPBP1|9567|GTP binding protein 1##CR456501|GTPBP1|9567|GTP binding protein 1##CU013098|GTPBP1|9567|GTP binding protein 1##CU013386|GTPBP1|9567|GTP binding protein 1##U87964|GTPBP1|9567|GTP binding protein 1##AK304188|SUN2|25777|Sad1 and UNC84 domain containing 2##AK295787|SUN2|25777|Sad1 and UNC84 domain containing 2	0.708223	denovo_WM_21:-8:0.708
chr14	23938582	23938725	reg1000141.p1	12.038	+	M58018 TSC_hg19_v1_chr14_-_23904870 AK307590 EU747717 NM_000257	-33794	-	TSC_hg19_v1_chr14_-_23877483 AK309494 NM_002471 X56181	-61170	-	TSC_hg19_v1_chr14_+_23845933 AF479262 NM_001037288 NM_138460	-92679	+	TSC_hg19_v1_chr14_+_23938899 NM_001042635 NM_015514 AK124318	238	+	TSC_hg19_v1_chr14_+_23938911 AK291875 AL050003 BC030817 AK022215 CU689028 EU832521 EU832603	260	+	BC131533 TSC_hg19_v1_chr14_-_24020861 AB028979 NM_033400	82167	-	M58018|MYH7|4625|myosin, heavy chain 7, cardiac muscle, beta##AK307590|MYH7|4625|myosin, heavy chain 7, cardiac muscle, beta##EU747717|MYH7|4625|myosin, heavy chain 7, cardiac muscle, beta##NM_000257|MYH7|4625|myosin, heavy chain 7, cardiac muscle, beta##AK309494|MYH6|4624|myosin, heavy chain 6, cardiac muscle, alpha##NM_002471|MYH6|4624|myosin, heavy chain 6, cardiac muscle, alpha##X56181|MYH6|4624|myosin, heavy chain 6, cardiac muscle, alpha##AF479262|CMTM5|116173|CKLF-like MARVEL transmembrane domain containing 5##NM_001037288|CMTM5|116173|CKLF-like MARVEL transmembrane domain containing 5##NM_138460|CMTM5|116173|CKLF-like MARVEL transmembrane domain containing 5##NM_001042635|NGDN|25983|neuroguidin, EIF4E binding protein##NM_015514|NGDN|25983|neuroguidin, EIF4E binding protein##AK124318|NGDN|25983|neuroguidin, EIF4E binding protein##AK291875|NGDN|25983|neuroguidin, EIF4E binding protein##AL050003|NGDN|25983|neuroguidin, EIF4E binding protein##BC030817|NGDN|25983|neuroguidin, EIF4E binding protein##AK022215|NGDN|25983|neuroguidin, EIF4E binding protein##EU832521|NGDN|25983|neuroguidin, EIF4E binding protein##EU832603|NGDN|25983|neuroguidin, EIF4E binding protein##BC131533|ZFHX2|85446|zinc finger homeobox 2##AB028979|ZFHX2|85446|zinc finger homeobox 2##NM_033400|ZFHX2|85446|zinc finger homeobox 2	1.954979	denovo_WM_21:-11:0.987	denovo_WM_21:-53:0.608
chr14	78083185	78083349	reg1000095.p1	12.036	+	AB011098 NM_004863 TSC_hg19_v1_chr14_-_78083124	-141	-	Y08686 TSC_hg19_v1_chr14_-_78082981 BC005123	-273	-	CU675001 DQ893297 DQ896786 TSC_hg19_v1_chr14_-_78082949	-332	-	BC015024 X91992 TSC_hg19_v1_chr14_-_78174367 CU693074 DQ890543 DQ893703 BC025787 NM_006020 BX537699	91085	-	NM_031210 TSC_hg19_v1_chr14_+_78174435 AF271779	91163	+	TSC_hg19_v1_chr14_+_78174445 BC017895 AF253980 AJ272055 AY860853 HQ257938	91179	+	AB011098|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2##NM_004863|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2##Y08686|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2##BC005123|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2##DQ893297|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2##DQ896786|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2##BC015024|ALKBH1|8846|alkB, alkylation repair homolog 1 (E. coli)##X91992|ALKBH1|8846|alkB, alkylation repair homolog 1 (E. coli)##DQ890543|ALKBH1|8846|alkB, alkylation repair homolog 1 (E. coli)##DQ893703|ALKBH1|8846|alkB, alkylation repair homolog 1 (E. coli)##BC025787|ALKBH1|8846|alkB, alkylation repair homolog 1 (E. coli)##NM_006020|ALKBH1|8846|alkB, alkylation repair homolog 1 (E. coli)##BX537699|ALKBH1|8846|alkB, alkylation repair homolog 1 (E. coli)##NM_031210|SLIRP|81892|SRA stem-loop interacting RNA binding protein##AF271779|SLIRP|81892|SRA stem-loop interacting RNA binding protein##BC017895|SLIRP|81892|SRA stem-loop interacting RNA binding protein##AF253980|SLIRP|81892|SRA stem-loop interacting RNA binding protein##AJ272055|SLIRP|81892|SRA stem-loop interacting RNA binding protein##AY860853|SLIRP|81892|SRA stem-loop interacting RNA binding protein##HQ257938|SLIRP|81892|SRA stem-loop interacting RNA binding protein	0.560432	denovo_WM_21:-44:0.546
chr22	37172180	37172348	reg1000092.p1	12.024	+	AL022729 TSC_hg19_v1_chr22_-_37172162 AK307105 AK307382 BC000566 AB209424 NM_001177701 NM_006860	-109	-	NM_001177702	-8191	-	AB528094 AF096322 CU012974 CU013262 CU686936 HQ258186 CR456414 BC112297 BC112299 BC069612 NM_006078	-73610	-	BC069300 NM_002854 BC096112 BC096113 BC096114 BC096115 X63070	43255	-	TSC_hg19_v1_chr22_+_37257047 BC002798 NM_000631 NM_013416 AK223324 AK290924 CR456528 AB025219 AB025220 AB463139 CU013128 CU013416 BT007346 CR542078	84844	+	TSC_hg19_v1_chr22_+_37309687 BC070085 NM_000395	137394	+	AL022729|IFT27|11020|intraflagellar transport 27 homolog (Chlamydomonas)##AK307105|IFT27|11020|intraflagellar transport 27 homolog (Chlamydomonas)##AK307382|IFT27|11020|intraflagellar transport 27 homolog (Chlamydomonas)##BC000566|IFT27|11020|intraflagellar transport 27 homolog (Chlamydomonas)##AB209424|IFT27|11020|intraflagellar transport 27 homolog (Chlamydomonas)##NM_001177701|IFT27|11020|intraflagellar transport 27 homolog (Chlamydomonas)##NM_006860|IFT27|11020|intraflagellar transport 27 homolog (Chlamydomonas)##NM_001177702|IFT27|11020|intraflagellar transport 27 homolog (Chlamydomonas)##AF096322|CACNG2|10369|calcium channel, voltage-dependent, gamma subunit 2##CU012974|CACNG2|10369|calcium channel, voltage-dependent, gamma subunit 2##CU013262|CACNG2|10369|calcium channel, voltage-dependent, gamma subunit 2##HQ258186|CACNG2|10369|calcium channel, voltage-dependent, gamma subunit 2##CR456414|CACNG2|10369|calcium channel, voltage-dependent, gamma subunit 2##BC112297|CACNG2|10369|calcium channel, voltage-dependent, gamma subunit 2##BC112299|CACNG2|10369|calcium channel, voltage-dependent, gamma subunit 2##BC069612|CACNG2|10369|calcium channel, voltage-dependent, gamma subunit 2##NM_006078|CACNG2|10369|calcium channel, voltage-dependent, gamma subunit 2##BC069300|PVALB|5816|parvalbumin##NM_002854|PVALB|5816|parvalbumin##BC096112|PVALB|5816|parvalbumin##BC096113|PVALB|5816|parvalbumin##BC096114|PVALB|5816|parvalbumin##BC096115|PVALB|5816|parvalbumin##X63070|PVALB|5816|parvalbumin##BC002798|NCF4|4689|neutrophil cytosolic factor 4, 40kDa##NM_000631|NCF4|4689|neutrophil cytosolic factor 4, 40kDa##NM_013416|NCF4|4689|neutrophil cytosolic factor 4, 40kDa##AK223324|NCF4|4689|neutrophil cytosolic factor 4, 40kDa##AK290924|NCF4|4689|neutrophil cytosolic factor 4, 40kDa##CR456528|NCF4|4689|neutrophil cytosolic factor 4, 40kDa##AB025219|NCF4|4689|neutrophil cytosolic factor 4, 40kDa##AB025220|NCF4|4689|neutrophil cytosolic factor 4, 40kDa##CU013128|NCF4|4689|neutrophil cytosolic factor 4, 40kDa##CU013416|NCF4|4689|neutrophil cytosolic factor 4, 40kDa##BT007346|NCF4|4689|neutrophil cytosolic factor 4, 40kDa##CR542078|NCF4|4689|neutrophil cytosolic factor 4, 40kDa##BC070085|CSF2RB|1439|colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)##NM_000395|CSF2RB|1439|colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	1.385094	denovo_WM_21:-20:0.909	denovo_WM_21:-68:0.476
chr2	74685350	74685506	reg1000074.p1	12.014	+	NM_031288 TSC_hg19_v1_chr2_+_74682219 AK295889 AK055333 AK295901 BC039617 BC064425 AB054538 BC050666	-3224	+	TSC_hg19_v1_chr2_-_74669065 NM_001015055	-16363	-	TSC_hg19_v1_chr2_-_74669029 AF049227 AK310036	-16392	-	NM_012477 TSC_hg19_v1_chr2_+_74685564 BC010012 BC071626 AK094297 AK315745 BC071850 BC064482 AF087888 AB464438 CU679571 DQ893075 EU176763	199	+	BC117250 BC117252 BC143934 TSC_hg19_v1_chr2_-_74692487 AK292553 AK304655	7026	-	TSC_hg19_v1_chr2_-_74692510 X87237 BC002804 BC028337 AK307991	7084	-	NM_031288|INO80B|83444|INO80 complex subunit B##AK295889|INO80B|83444|INO80 complex subunit B##AK295901|INO80B|83444|INO80 complex subunit B##BC039617|INO80B|83444|INO80 complex subunit B##BC064425|INO80B|83444|INO80 complex subunit B##AB054538|INO80B|83444|INO80 complex subunit B##BC050666|INO80B|83444|INO80 complex subunit B##NM_001015055|RTKN|6242|rhotekin##AF049227|RTKN|6242|rhotekin##NM_012477|WBP1|23559|WW domain binding protein 1##BC010012|WBP1|23559|WW domain binding protein 1##BC071626|WBP1|23559|WW domain binding protein 1##AK094297|WBP1|23559|WW domain binding protein 1##AK315745|WBP1|23559|WW domain binding protein 1##BC071850|WBP1|23559|WW domain binding protein 1##BC064482|WBP1|23559|WW domain binding protein 1##AF087888|WBP1|23559|WW domain binding protein 1##DQ893075|WBP1|23559|WW domain binding protein 1##EU176763|WBP1|23559|WW domain binding protein 1##BC117250|MOGS|7841|mannosyl-oligosaccharide glucosidase##BC117252|MOGS|7841|mannosyl-oligosaccharide glucosidase##BC143934|MOGS|7841|mannosyl-oligosaccharide glucosidase##AK292553|MOGS|7841|mannosyl-oligosaccharide glucosidase##AK304655|MOGS|7841|mannosyl-oligosaccharide glucosidase##X87237|MOGS|7841|mannosyl-oligosaccharide glucosidase##BC002804|MOGS|7841|mannosyl-oligosaccharide glucosidase##BC028337|MOGS|7841|mannosyl-oligosaccharide glucosidase##AK307991|MOGS|7841|mannosyl-oligosaccharide glucosidase	0.984826	denovo_WM_21:83:0.933
chr7	150725390	150725510	reg1000149.p1	11.987	+	BC128587 AK096734 AY515311 NM_173681	-3882	-	AK292928 AK302686 M93718 AK315213 TSC_hg19_v1_chr7_+_150690869 AK223636 AK225827 M95296 BC069465 HQ257992 AF400594 DQ256129 DQ256130 DQ256131 NM_001160109 NM_001160110 NM_001160111	-34586	+	NM_000603 BC063294 AK300390	-37283	+	TSC_hg19_v1_chr7_+_150725538 AK128129 NM_007188 AK094636 AK002018 AK094005 AK222911 AK294344 AK310796 AK314721 BC141814 BC141836 BC151235 AF047690 BC130036 AK024401 BC143080 BC146829	113	+	BC030282 NM_004769 NM_020321 NM_020322	20154	+	AY049778 BT006680 CR457041 CU674995 DQ411039 AB463550 L04658 TSC_hg19_v1_chr7_-_150754948 BC005115 X66364 AK026533	29506	-	BC128587|ATG9B|285973|ATG9 autophagy related 9 homolog B (S. cerevisiae)##AK096734|ATG9B|285973|ATG9 autophagy related 9 homolog B (S. cerevisiae)##AY515311|ATG9B|285973|ATG9 autophagy related 9 homolog B (S. cerevisiae)##NM_173681|ATG9B|285973|ATG9 autophagy related 9 homolog B (S. cerevisiae)##AK292928|NOS3|4846|nitric oxide synthase 3 (endothelial cell)##AK302686|NOS3|4846|nitric oxide synthase 3 (endothelial cell)##M93718|NOS3|4846|nitric oxide synthase 3 (endothelial cell)##AK315213|NOS3|4846|nitric oxide synthase 3 (endothelial cell)##AK223636|NOS3|4846|nitric oxide synthase 3 (endothelial cell)##AK225827|NOS3|4846|nitric oxide synthase 3 (endothelial cell)##M95296|NOS3|4846|nitric oxide synthase 3 (endothelial cell)##BC069465|NOS3|4846|nitric oxide synthase 3 (endothelial cell)##HQ257992|NOS3|4846|nitric oxide synthase 3 (endothelial cell)##AF400594|NOS3|4846|nitric oxide synthase 3 (endothelial cell)##DQ256129|NOS3|4846|nitric oxide synthase 3 (endothelial cell)##DQ256130|NOS3|4846|nitric oxide synthase 3 (endothelial cell)##DQ256131|NOS3|4846|nitric oxide synthase 3 (endothelial cell)##NM_001160109|NOS3|4846|nitric oxide synthase 3 (endothelial cell)##NM_001160110|NOS3|4846|nitric oxide synthase 3 (endothelial cell)##NM_001160111|NOS3|4846|nitric oxide synthase 3 (endothelial cell)##NM_000603|NOS3|4846|nitric oxide synthase 3 (endothelial cell)##BC063294|NOS3|4846|nitric oxide synthase 3 (endothelial cell)##AK300390|NOS3|4846|nitric oxide synthase 3 (endothelial cell)##NM_007188|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8##AK094636|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8##AK002018|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8##AK094005|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8##AK222911|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8##AK294344|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8##AK310796|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8##AK314721|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8##BC141814|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8##BC141836|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8##BC151235|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8##AF047690|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8##AK024401|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8##BC143080|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8##BC146829|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8##BC030282|ACCN3|9311|amiloride-sensitive cation channel 3##NM_004769|ACCN3|9311|amiloride-sensitive cation channel 3##NM_020321|ACCN3|9311|amiloride-sensitive cation channel 3##NM_020322|ACCN3|9311|amiloride-sensitive cation channel 3##AY049778|CDK5|1020|cyclin-dependent kinase 5##BT006680|CDK5|1020|cyclin-dependent kinase 5##CR457041|CDK5|1020|cyclin-dependent kinase 5##DQ411039|CDK5|1020|cyclin-dependent kinase 5##L04658|CDK5|1020|cyclin-dependent kinase 5##BC005115|CDK5|1020|cyclin-dependent kinase 5##X66364|CDK5|1020|cyclin-dependent kinase 5##AK026533|CDK5|1020|cyclin-dependent kinase 5	0.261905	
chr19	19174637	19174762	reg1000015.p2	11.977	+	BC067125 TSC_hg19_v1_chr19_+_19144690	-30039	+	TSC_hg19_v1_chr19_+_19144524 BC056161	-30152	+	TSC_hg19_v1_chr19_+_19144418 NM_001199196 NM_033415 BC010051 AK303914 BX648486	-30269	+	TSC_hg19_v1_chr19_+_19174802 NM_178526 BC045598 FN356975	110	+	TSC_hg19_v1_chr19_-_19249264 AK225424 AK000429 NM_017814	74555	-	TSC_hg19_v1_chr19_-_19249268 BC005210 AK096964	74576	-	BC067125|ARMC6|93436|armadillo repeat containing 6##BC056161|ARMC6|93436|armadillo repeat containing 6##NM_001199196|ARMC6|93436|armadillo repeat containing 6##NM_033415|ARMC6|93436|armadillo repeat containing 6##AK303914|ARMC6|93436|armadillo repeat containing 6##BX648486|ARMC6|93436|armadillo repeat containing 6##NM_178526|SLC25A42|284439|solute carrier family 25, member 42##BC045598|SLC25A42|284439|solute carrier family 25, member 42##FN356975|SLC25A42|284439|solute carrier family 25, member 42##AK225424|TMEM161A|54929|transmembrane protein 161A##AK000429|TMEM161A|54929|transmembrane protein 161A##NM_017814|TMEM161A|54929|transmembrane protein 161A##BC005210|TMEM161A|54929|transmembrane protein 161A##AK096964|TMEM161A|54929|transmembrane protein 161A	1.255263	denovo_WM_21:-23:0.260	denovo_WM_21:56:0.891
chr7	8008243	8008383	reg1000170.p1	11.973	+	BC009868 NM_002947	-250076	-	TSC_hg19_v1_chr7_+_7680382 AK295253	-327940	+	BT007320 AB464142 TSC_hg19_v1_chr7_-_7680067 L07493 BC005264 AK311842	-328226	-	TSC_hg19_v1_chr7_+_8008451 NM_138426 BC050291	120	+	NM_022307 U26591 TSC_hg19_v1_chr7_-_8301746	293403	-	U26592 AK292106 NM_001136020 TSC_hg19_v1_chr7_-_8301805	293478	-	BC009868|RPA3|6119|replication protein A3, 14kDa##NM_002947|RPA3|6119|replication protein A3, 14kDa##AK295253|LOC729852|729852|uncharacterized LOC729852##BT007320|RPA3|6119|replication protein A3, 14kDa##L07493|RPA3|6119|replication protein A3, 14kDa##BC005264|RPA3|6119|replication protein A3, 14kDa##AK311842|RPA3|6119|replication protein A3, 14kDa##NM_138426|GLCCI1|113263|glucocorticoid induced transcript 1##BC050291|GLCCI1|113263|glucocorticoid induced transcript 1##NM_022307|ICA1|3382|islet cell autoantigen 1, 69kDa##U26591|ICA1|3382|islet cell autoantigen 1, 69kDa##U26592|ICA1|3382|islet cell autoantigen 1, 69kDa##AK292106|ICA1|3382|islet cell autoantigen 1, 69kDa##NM_001136020|ICA1|3382|islet cell autoantigen 1, 69kDa	1.394911	denovo_WM_21:33:0.839	denovo_WM_21:-37:0.556
chr12	112563211	112563321	reg1000093.p1	11.949	+	TSC_hg19_v1_chr12_-_112546588 BC065481 AB054990 AK309772 AK307494 BC095484 BX647450 BC034357 BX641140 AK292485 BC113585 BC113587 NM_024953	-16668	-	X94910 TSC_hg19_v1_chr12_+_112451266 CR541667	-112001	+	TSC_hg19_v1_chr12_+_112451229 AK309426	-112036	+	TSC_hg19_v1_chr12_+_112563341 AK309916 AK312601 NM_001143906 NM_006700	56	+	TSC_hg19_v1_chr12_+_112563363 AK122620 AK291331 AK295474 AB007447	125	+	TSC_hg19_v1_chr12_-_112630525 AF174498	67262	-	BC065481|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##AB054990|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##AK309772|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##AK307494|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BC095484|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BX647450|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BC034357|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BX641140|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##AK292485|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BC113585|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BC113587|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##NM_024953|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##X94910|ERP29|10961|endoplasmic reticulum protein 29##CR541667|ERP29|10961|endoplasmic reticulum protein 29##AK309916|TRAFD1|10906|TRAF-type zinc finger domain containing 1##AK312601|TRAFD1|10906|TRAF-type zinc finger domain containing 1##NM_001143906|TRAFD1|10906|TRAF-type zinc finger domain containing 1##NM_006700|TRAFD1|10906|TRAF-type zinc finger domain containing 1##AK122620|TRAFD1|10906|TRAF-type zinc finger domain containing 1##AK291331|TRAFD1|10906|TRAF-type zinc finger domain containing 1##AK295474|TRAFD1|10906|TRAF-type zinc finger domain containing 1##AB007447|TRAFD1|10906|TRAF-type zinc finger domain containing 1##AF174498|C12orf51|283450|chromosome 12 open reading frame 51	1.426249	denovo_WM_21:24:0.751	denovo_WM_21:-54:0.675
chr12	58087732	58087916	reg1000172.p2	11.937	+	TSC_hg19_v1_chr12_-_58026955 AB209460 AK289690 BC029828 NM_001478 AK299845	-60880	-	M83651 TSC_hg19_v1_chr12_-_58026719	-61159	-	AK293432 TSC_hg19_v1_chr12_-_58026433 AK302503	-61379	-	NM_001017956 NM_001017957 NM_001017958 NM_006812 AK303291 AK291374 TSC_hg19_v1_chr12_+_58087929 AB002806 AK129781 AK293435 AK294870 AK130733 AK296770 AK298532 AK303858 AK304533 BC000532 BC007254 BC023513 AB590116 CR456791 CU674262 CU675585 DQ892759 DQ896004	16	+	TSC_hg19_v1_chr12_+_58120054 AK301303 BC069024 BC098453 BC039697 BC019026	32244	+	AY128689 NM_001122772	44204	-	AB209460|B4GALNT1|2583|beta-1,4-N-acetyl-galactosaminyl transferase 1##AK289690|B4GALNT1|2583|beta-1,4-N-acetyl-galactosaminyl transferase 1##BC029828|B4GALNT1|2583|beta-1,4-N-acetyl-galactosaminyl transferase 1##NM_001478|B4GALNT1|2583|beta-1,4-N-acetyl-galactosaminyl transferase 1##AK299845|B4GALNT1|2583|beta-1,4-N-acetyl-galactosaminyl transferase 1##M83651|B4GALNT1|2583|beta-1,4-N-acetyl-galactosaminyl transferase 1##AK293432|B4GALNT1|2583|beta-1,4-N-acetyl-galactosaminyl transferase 1##AK302503|B4GALNT1|2583|beta-1,4-N-acetyl-galactosaminyl transferase 1##NM_001017956|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##NM_001017957|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##NM_001017958|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##NM_006812|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##AK303291|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##AK291374|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##AB002806|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##AK129781|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##AK293435|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##AK294870|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##AK130733|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##AK296770|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##AK298532|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##AK303858|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##AK304533|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##BC000532|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##BC007254|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##BC023513|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##CR456791|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##DQ892759|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##DQ896004|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##AK301303|LOC100130776|100130776|uncharacterized LOC100130776##BC069024|LOC100130776|100130776|uncharacterized LOC100130776##BC039697|LOC100130776|100130776|uncharacterized LOC100130776##BC019026|LOC100130776|100130776|uncharacterized LOC100130776##AY128689|AGAP2|116986|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2##NM_001122772|AGAP2|116986|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	1.295812	denovo_WM_21:33:0.524	denovo_WM_21:-77:0.432	denovo_WM_21:-96:0.340
chr5	32313280	32313404	reg1000114.p1	11.934	+	TSC_hg19_v1_chr5_-_32313095 AK000483 NM_001040446	-209	-	AB385495 CU691208 TSC_hg19_v1_chr5_-_32313046 BC057393 AB051469 AY028703	-337	-	TSC_hg19_v1_chr5_-_32174429 BC033725 AK057544 AK075156 NM_022130	-138911	-	TSC_hg19_v1_chr5_-_32388605 AK295297	75278	-	TSC_hg19_v1_chr5_-_32388710 AK025481	75382	-	TSC_hg19_v1_chr5_-_32403324 BC062986 BC051893	90011	-	AK000483|MTMR12|54545|myotubularin related protein 12##NM_001040446|MTMR12|54545|myotubularin related protein 12##BC057393|MTMR12|54545|myotubularin related protein 12##AB051469|MTMR12|54545|myotubularin related protein 12##AY028703|MTMR12|54545|myotubularin related protein 12##BC033725|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)##AK057544|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)##AK075156|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)##NM_022130|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)##AK295297|ZFR|51663|zinc finger RNA binding protein##AK025481|ZFR|51663|zinc finger RNA binding protein##BC062986|ZFR|51663|zinc finger RNA binding protein##BC051893|ZFR|51663|zinc finger RNA binding protein	1.029566	denovo_WM_21:-72:0.988
chr10	76586193	76586332	reg1000111.p2	11.923	+	TSC_hg19_v1_chr10_+_75936554 DQ890624 EU176483	-649675	+	TSC_hg19_v1_chr10_+_75936527 BC003568 U90339	-649732	+	U50196 TSC_hg19_v1_chr10_+_75936520 AK290633 AK302706	-649780	+	TSC_hg19_v1_chr10_+_76586357 AK074816 BC014143 BC048199 NM_012330 AF217500 BC150618	92	+	AY686755 NM_001003892 BC137321 BC137322	232043	-	AB027004 AB103375 NM_016364	272985	-	DQ890624|ADK|132|adenosine kinase##EU176483|ADK|132|adenosine kinase##BC003568|ADK|132|adenosine kinase##U90339|ADK|132|adenosine kinase##U50196|ADK|132|adenosine kinase##AK290633|ADK|132|adenosine kinase##AK302706|ADK|132|adenosine kinase##AK074816|KAT6B|23522|K(lysine) acetyltransferase 6B##BC014143|KAT6B|23522|K(lysine) acetyltransferase 6B##BC048199|KAT6B|23522|K(lysine) acetyltransferase 6B##NM_012330|KAT6B|23522|K(lysine) acetyltransferase 6B##AF217500|KAT6B|23522|K(lysine) acetyltransferase 6B##BC150618|KAT6B|23522|K(lysine) acetyltransferase 6B##AY686755|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##NM_001003892|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##BC137321|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##BC137322|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##AB027004|DUSP13|51207|dual specificity phosphatase 13##AB103375|DUSP13|51207|dual specificity phosphatase 13##NM_016364|DUSP13|51207|dual specificity phosphatase 13	0.0	
chr16	58663824	58663962	reg1000140.p1	11.876	+	TSC_hg19_v1_chr16_-_58663742 BC040523 AL833549 NM_016284 NM_206999	-148	-	AK300281 AK056927 BX537840 TSC_hg19_v1_chr16_-_58663736 EF553522 AL832769	-157	-	TSC_hg19_v1_chr16_-_58663731 BX647815	-164	-	TSC_hg19_v1_chr16_-_58718647 BC063399 AK222932 AK022786 AK001677 AK299424 NM_018231	54763	-	CU674254 TSC_hg19_v1_chr16_-_58768221 DQ891883 DQ895068 M22632 BC000525 AK290847 AK223271 AK302249 AK295993 AK098313 NM_002080	104304	-	AK124734 NM_001796	3406845	-	BC040523|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##AL833549|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##NM_016284|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##NM_206999|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##AK300281|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##AK056927|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##BX537840|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##EF553522|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##AL832769|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##BX647815|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##BC063399|SLC38A7|55238|solute carrier family 38, member 7##AK222932|SLC38A7|55238|solute carrier family 38, member 7##AK022786|SLC38A7|55238|solute carrier family 38, member 7##AK001677|SLC38A7|55238|solute carrier family 38, member 7##AK299424|SLC38A7|55238|solute carrier family 38, member 7##NM_018231|SLC38A7|55238|solute carrier family 38, member 7##DQ891883|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##DQ895068|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##M22632|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##BC000525|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK290847|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK223271|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK302249|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK295993|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK098313|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##NM_002080|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK124734|CDH8|1006|cadherin 8, type 2##NM_001796|CDH8|1006|cadherin 8, type 2	0.505861	denovo_WM_21:-56:0.426
chr20	44441097	44441208	reg1000070.p1	11.849	+	TSC_hg19_v1_chr20_+_44420622 BC024290 CU692912	-20521	+	AK314003 TSC_hg19_v1_chr20_+_44420609	-20545	+	NM_052951 TSC_hg19_v1_chr20_+_44420592 AB035676	-20562	+	AK311949 NM_007019 NM_181799 NM_181800 NM_181802 NM_181803 BC050736 TSC_hg19_v1_chr20_+_44441282 BC016292 BC007656 U73379 BC028161	129	+	BT007300 BT020165 BT020166 CR456988 DQ892416 DQ895630 EU831629 EU831714 TSC_hg19_v1_chr20_+_44441336	187	+	NM_181801	519	+	BC024290|DNTTIP1|116092|deoxynucleotidyltransferase, terminal, interacting protein 1##AK314003|DNTTIP1|116092|deoxynucleotidyltransferase, terminal, interacting protein 1##NM_052951|DNTTIP1|116092|deoxynucleotidyltransferase, terminal, interacting protein 1##AB035676|DNTTIP1|116092|deoxynucleotidyltransferase, terminal, interacting protein 1##AK311949|UBE2C|11065|ubiquitin-conjugating enzyme E2C##NM_007019|UBE2C|11065|ubiquitin-conjugating enzyme E2C##NM_181799|UBE2C|11065|ubiquitin-conjugating enzyme E2C##NM_181800|UBE2C|11065|ubiquitin-conjugating enzyme E2C##NM_181802|UBE2C|11065|ubiquitin-conjugating enzyme E2C##NM_181803|UBE2C|11065|ubiquitin-conjugating enzyme E2C##BC050736|UBE2C|11065|ubiquitin-conjugating enzyme E2C##BC016292|UBE2C|11065|ubiquitin-conjugating enzyme E2C##BC007656|UBE2C|11065|ubiquitin-conjugating enzyme E2C##U73379|UBE2C|11065|ubiquitin-conjugating enzyme E2C##BC028161|UBE2C|11065|ubiquitin-conjugating enzyme E2C##BT007300|UBE2C|11065|ubiquitin-conjugating enzyme E2C##BT020165|UBE2C|11065|ubiquitin-conjugating enzyme E2C##BT020166|UBE2C|11065|ubiquitin-conjugating enzyme E2C##CR456988|UBE2C|11065|ubiquitin-conjugating enzyme E2C##DQ892416|UBE2C|11065|ubiquitin-conjugating enzyme E2C##DQ895630|UBE2C|11065|ubiquitin-conjugating enzyme E2C##EU831629|UBE2C|11065|ubiquitin-conjugating enzyme E2C##EU831714|UBE2C|11065|ubiquitin-conjugating enzyme E2C##NM_181801|UBE2C|11065|ubiquitin-conjugating enzyme E2C	0.531728	denovo_WM_21:41:0.242	denovo_WM_21:72:0.290
chrX	3732929	3733089	reg1000181.p1	11.758	+	TSC_hg19_v1_chrX_-_3631668 NM_005044	-101291	-	TSC_hg19_v1_chrX_-_3631645 X85545	-101364	-	TSC_hg19_v1_chrX_-_3631619 BC041073	-101467	-	AB033086 AF376803 AX773938 NM_020742	2412878	-	AK055471 BC034018 NM_181332	2413671	-	AF167078 AF167079 NM_016379	2720149	-	NM_005044|PRKX|5613|protein kinase, X-linked##X85545|PRKX|5613|protein kinase, X-linked##BC041073|PRKX|5613|protein kinase, X-linked##AB033086|NLGN4X|57502|neuroligin 4, X-linked##AF376803|NLGN4X|57502|neuroligin 4, X-linked##AX773938|NLGN4X|57502|neuroligin 4, X-linked##NM_020742|NLGN4X|57502|neuroligin 4, X-linked##AK055471|NLGN4X|57502|neuroligin 4, X-linked##BC034018|NLGN4X|57502|neuroligin 4, X-linked##NM_181332|NLGN4X|57502|neuroligin 4, X-linked##AF167078|VCX3A|51481|variable charge, X-linked 3A##AF167079|VCX2|51480|variable charge, X-linked 2##NM_016379|VCX3A|51481|variable charge, X-linked 3A	0.059872	
chr5	31532240	31532381	reg1000205.p1	11.731	+	TSC_hg19_v1_chr5_-_31532201 AK308093 AF189011 BC054003 BX647724 NM_001100412 NM_013235	-88	-	TSC_hg19_v1_chr5_+_31193875 BC000019 AK024238	-338433	+	NM_004932 TSC_hg19_v1_chr5_+_31193792 AK291290	-338514	+	NM_018356 TSC_hg19_v1_chr5_+_31532398 BC032845 AK299156 AK002055 BC021215 AB527598	125	+	TSC_hg19_v1_chr5_+_31639424 AB002298	107160	+	NM_178140	266720	+	AK308093|DROSHA|29102|drosha, ribonuclease type III##AF189011|DROSHA|29102|drosha, ribonuclease type III##BC054003|DROSHA|29102|drosha, ribonuclease type III##BX647724|DROSHA|29102|drosha, ribonuclease type III##NM_001100412|DROSHA|29102|drosha, ribonuclease type III##NM_013235|DROSHA|29102|drosha, ribonuclease type III##BC000019|CDH6|1004|cadherin 6, type 2, K-cadherin (fetal kidney)##AK024238|CDH6|1004|cadherin 6, type 2, K-cadherin (fetal kidney)##NM_004932|CDH6|1004|cadherin 6, type 2, K-cadherin (fetal kidney)##AK291290|CDH6|1004|cadherin 6, type 2, K-cadherin (fetal kidney)##NM_018356|C5orf22|55322|chromosome 5 open reading frame 22##BC032845|C5orf22|55322|chromosome 5 open reading frame 22##AK299156|C5orf22|55322|chromosome 5 open reading frame 22##AK002055|C5orf22|55322|chromosome 5 open reading frame 22##BC021215|C5orf22|55322|chromosome 5 open reading frame 22##AB002298|PDZD2|23037|PDZ domain containing 2##NM_178140|PDZD2|23037|PDZ domain containing 2	0.135927	
chr11	65382939	65383070	reg1000147.p2	11.722	+	TSC_hg19_v1_chr11_-_65382764 AK092015 AX747311	-228	-	TSC_hg19_v1_chr11_-_65381782 AK310986	-1196	-	TSC_hg19_v1_chr11_-_65381690 U07747 BC064543 AK315557 AB209655 BC011263 L32976 AK222781 NM_002419	-1311	-	TSC_hg19_v1_chr11_+_65383657 NM_032223	702	+	TSC_hg19_v1_chr11_+_65405586 NM_006747 AF029789 AK308234 BC110353 BC010492	22578	+	AB005666 NM_153253	24587	+	AK092015|MAP3K11|4296|mitogen-activated protein kinase kinase kinase 11##U07747|MAP3K11|4296|mitogen-activated protein kinase kinase kinase 11##BC064543|MAP3K11|4296|mitogen-activated protein kinase kinase kinase 11##AK315557|MAP3K11|4296|mitogen-activated protein kinase kinase kinase 11##AB209655|MAP3K11|4296|mitogen-activated protein kinase kinase kinase 11##BC011263|MAP3K11|4296|mitogen-activated protein kinase kinase kinase 11##L32976|MAP3K11|4296|mitogen-activated protein kinase kinase kinase 11##AK222781|MAP3K11|4296|mitogen-activated protein kinase kinase kinase 11##NM_002419|MAP3K11|4296|mitogen-activated protein kinase kinase kinase 11##NM_032223|PCNXL3|399909|pecanex-like 3 (Drosophila)##NM_006747|SIPA1|6494|signal-induced proliferation-associated 1##AF029789|SIPA1|6494|signal-induced proliferation-associated 1##AK308234|SIPA1|6494|signal-induced proliferation-associated 1##BC110353|SIPA1|6494|signal-induced proliferation-associated 1##BC010492|SIPA1|6494|signal-induced proliferation-associated 1##AB005666|SIPA1|6494|signal-induced proliferation-associated 1##NM_153253|SIPA1|6494|signal-induced proliferation-associated 1	0.0	
chr17	47841565	47841750	reg1000175.p1	11.719	+	NM_030802 BC037572 TSC_hg19_v1_chr17_-_47841551	-111	-	AF123073 BC065199 TSC_hg19_v1_chr17_-_47841483	-178	-	BX641166 TSC_hg19_v1_chr17_-_47785555	-56107	-	NM_001199155 NM_001199156 NM_001199157 NM_001199158 NM_007067 TSC_hg19_v1_chr17_+_47866042 AK293976 AK294014 AK023890 AK294052 AK294836 AF140360	24361	+	TSC_hg19_v1_chr17_+_47866068 BC015485 BC032640 AF217502	24424	+	TSC_hg19_v1_chr17_+_47866119 AF074606 AB463912 CU689460 DQ890883 DQ894037	24501	+	NM_030802|FAM117A|81558|family with sequence similarity 117, member A##BC037572|FAM117A|81558|family with sequence similarity 117, member A##AF123073|FAM117A|81558|family with sequence similarity 117, member A##BC065199|FAM117A|81558|family with sequence similarity 117, member A##BX641166|SLC35B1|10237|solute carrier family 35, member B1##NM_001199155|KAT7|11143|K(lysine) acetyltransferase 7##NM_001199156|KAT7|11143|K(lysine) acetyltransferase 7##NM_001199157|KAT7|11143|K(lysine) acetyltransferase 7##NM_001199158|KAT7|11143|K(lysine) acetyltransferase 7##NM_007067|KAT7|11143|K(lysine) acetyltransferase 7##AK293976|KAT7|11143|K(lysine) acetyltransferase 7##AK294014|KAT7|11143|K(lysine) acetyltransferase 7##AK023890|KAT7|11143|K(lysine) acetyltransferase 7##AK294052|KAT7|11143|K(lysine) acetyltransferase 7##AK294836|KAT7|11143|K(lysine) acetyltransferase 7##AF140360|KAT7|11143|K(lysine) acetyltransferase 7##BC015485|KAT7|11143|K(lysine) acetyltransferase 7##BC032640|KAT7|11143|K(lysine) acetyltransferase 7##AF217502|KAT7|11143|K(lysine) acetyltransferase 7##AF074606|KAT7|11143|K(lysine) acetyltransferase 7##DQ890883|KAT7|11143|K(lysine) acetyltransferase 7##DQ894037|KAT7|11143|K(lysine) acetyltransferase 7	2.060837	denovo_WM_21:65:0.923	denovo_WM_21:-88:0.595	denovo_WM_21:106:0.486
chr19	8455123	8455245	reg1000054.p2	11.699	+	NM_001039667 NM_139314 TSC_hg19_v1_chr19_+_8429039 AB056477 AF202636 AK222489 AK303269 AK222524 AY358275 AF153606 BC023647 AF169312 CU692818	-26077	+	BC035849 TSC_hg19_v1_chr19_-_8408147 AB284126 AK097023 AK128815 BC066124 BC066775 NM_198471	-47049	-	TSC_hg19_v1_chr19_+_8386383 AB055779 AK293636 AK301638 AK311925 BC070217 NM_001031 BC070218 BC000354 BC018810 L05091 U58682 BC021239 DQ891357 DQ894538 CR457055	-68790	+	TSC_hg19_v1_chr19_+_8455237 NM_004218 AK310573	35	+	TSC_hg19_v1_chr19_+_8455246 AK312994	67	+	TSC_hg19_v1_chr19_+_8455285 AK297498 AK225642 AK225036 D38516 X79780 BC110081 AB590872 AF498947 BT019535 BT019536 CR536494 CR541691 GQ129215 GQ129216	98	+	NM_001039667|ANGPTL4|51129|angiopoietin-like 4##NM_139314|ANGPTL4|51129|angiopoietin-like 4##AB056477|ANGPTL4|51129|angiopoietin-like 4##AF202636|ANGPTL4|51129|angiopoietin-like 4##AK222489|ANGPTL4|51129|angiopoietin-like 4##AK303269|ANGPTL4|51129|angiopoietin-like 4##AK222524|ANGPTL4|51129|angiopoietin-like 4##AY358275|ANGPTL4|51129|angiopoietin-like 4##AF153606|ANGPTL4|51129|angiopoietin-like 4##BC023647|ANGPTL4|51129|angiopoietin-like 4##AF169312|ANGPTL4|51129|angiopoietin-like 4##BC035849|KANK3|256949|KN motif and ankyrin repeat domains 3##AB284126|KANK3|256949|KN motif and ankyrin repeat domains 3##AK128815|KANK3|256949|KN motif and ankyrin repeat domains 3##BC066124|KANK3|256949|KN motif and ankyrin repeat domains 3##BC066775|KANK3|256949|KN motif and ankyrin repeat domains 3##NM_198471|KANK3|256949|KN motif and ankyrin repeat domains 3##AK293636|RPS28|6234|ribosomal protein S28##AK301638|RPS28|6234|ribosomal protein S28##AK311925|RPS28|6234|ribosomal protein S28##BC070217|RPS28|6234|ribosomal protein S28##NM_001031|RPS28|6234|ribosomal protein S28##BC070218|RPS28|6234|ribosomal protein S28##BC000354|RPS28|6234|ribosomal protein S28##BC018810|RPS28|6234|ribosomal protein S28##L05091|RPS28|6234|ribosomal protein S28##U58682|RPS28|6234|ribosomal protein S28##BC021239|RPS28|6234|ribosomal protein S28##DQ891357|RPS28|6234|ribosomal protein S28##DQ894538|RPS28|6234|ribosomal protein S28##CR457055|RPS28|6234|ribosomal protein S28##NM_004218|RAB11B|9230|RAB11B, member RAS oncogene family##AK312994|RAB11B|9230|RAB11B, member RAS oncogene family##AK297498|RAB11B|9230|RAB11B, member RAS oncogene family##AK225642|RAB11B|9230|RAB11B, member RAS oncogene family##AK225036|RAB11B|9230|RAB11B, member RAS oncogene family##D38516|RAB11B|9230|RAB11B, member RAS oncogene family##X79780|RAB11B|9230|RAB11B, member RAS oncogene family##BC110081|RAB11B|9230|RAB11B, member RAS oncogene family##AF498947|RAB11B|9230|RAB11B, member RAS oncogene family##BT019535|RAB11B|9230|RAB11B, member RAS oncogene family##BT019536|RAB11B|9230|RAB11B, member RAS oncogene family##CR536494|RAB11B|9230|RAB11B, member RAS oncogene family##CR541691|RAB11B|9230|RAB11B, member RAS oncogene family##GQ129215|RAB11B|9230|RAB11B, member RAS oncogene family##GQ129216|RAB11B|9230|RAB11B, member RAS oncogene family	1.021259	denovo_WM_21:-25:0.994
chr1	35658790	35658949	reg1000168.p1	11.687	+	NM_005066 TSC_hg19_v1_chr1_-_35658747 BC051192	-124	-	BC027717 TSC_hg19_v1_chr1_-_35658734 BC000546 BC027708 X70944 AK307985	-133	-	BC004534 TSC_hg19_v1_chr1_-_35658589	-324	-	TSC_hg19_v1_chr1_+_35734567 AK308320 NM_005095	75693	+	TSC_hg19_v1_chr1_+_35734624 BC127113 BC127114 AB587559	75759	+	BX648067 TSC_hg19_v1_chr1_+_35851133	192248	+	NM_005066|SFPQ|6421|splicing factor proline/glutamine-rich##BC051192|SFPQ|6421|splicing factor proline/glutamine-rich##BC027717|SFPQ|6421|splicing factor proline/glutamine-rich##BC000546|SFPQ|6421|splicing factor proline/glutamine-rich##BC027708|SFPQ|6421|splicing factor proline/glutamine-rich##X70944|SFPQ|6421|splicing factor proline/glutamine-rich##AK307985|SFPQ|6421|splicing factor proline/glutamine-rich##BC004534|SFPQ|6421|splicing factor proline/glutamine-rich##AK308320|ZMYM4|9202|zinc finger, MYM-type 4##NM_005095|ZMYM4|9202|zinc finger, MYM-type 4##BC127113|ZMYM4|9202|zinc finger, MYM-type 4##BC127114|ZMYM4|9202|zinc finger, MYM-type 4##BX648067|ZMYM4|9202|zinc finger, MYM-type 4	1.114357	denovo_WM_21:11:0.933
chrX	47420437	47420583	reg1000218.p1	11.684	+	BC015023 NM_007130 NM_153380	-78166	-	U28687 NM_003446 BC075003 AB528013 EU446919	-190487	+	TSC_hg19_v1_chrX_+_47092422 AK055588 AK098394 BC073960 BC063668 AB073597 BC000350 AB385092 U44839 AK294635	-328045	+	NM_001654 X04790 TSC_hg19_v1_chrX_+_47420605 AB208831 AK300975 AK130043 AK297453 AK307747 BC002466 BC007514	57	+	TSC_hg19_v1_chrX_+_47441773 NM_003254 AK074854 AK296116 BC000866 BC007097	21213	+	TSC_hg19_v1_chrX_+_47441834 X03124 M12670 AK310206 AK311937 AK307222 M59906 X02598	21313	+	BC015023|ZNF41|7592|zinc finger protein 41##NM_007130|ZNF41|7592|zinc finger protein 41##NM_153380|ZNF41|7592|zinc finger protein 41##U28687|ZNF157|7712|zinc finger protein 157##NM_003446|ZNF157|7712|zinc finger protein 157##BC075003|ZNF157|7712|zinc finger protein 157##EU446919|ZNF157|7712|zinc finger protein 157##AK055588|USP11|8237|ubiquitin specific peptidase 11##AK098394|USP11|8237|ubiquitin specific peptidase 11##BC073960|USP11|8237|ubiquitin specific peptidase 11##BC063668|USP11|8237|ubiquitin specific peptidase 11##AB073597|USP11|8237|ubiquitin specific peptidase 11##BC000350|USP11|8237|ubiquitin specific peptidase 11##U44839|USP11|8237|ubiquitin specific peptidase 11##AK294635|USP11|8237|ubiquitin specific peptidase 11##NM_001654|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##X04790|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AB208831|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK300975|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK130043|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK297453|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK307747|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##BC002466|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##BC007514|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##NM_003254|TIMP1|7076|TIMP metallopeptidase inhibitor 1##AK074854|TIMP1|7076|TIMP metallopeptidase inhibitor 1##AK296116|TIMP1|7076|TIMP metallopeptidase inhibitor 1##BC000866|TIMP1|7076|TIMP metallopeptidase inhibitor 1##BC007097|TIMP1|7076|TIMP metallopeptidase inhibitor 1##X03124|TIMP1|7076|TIMP metallopeptidase inhibitor 1##M12670|TIMP1|7076|TIMP metallopeptidase inhibitor 1##AK310206|TIMP1|7076|TIMP metallopeptidase inhibitor 1##AK311937|TIMP1|7076|TIMP metallopeptidase inhibitor 1##M59906|TIMP1|7076|TIMP metallopeptidase inhibitor 1##X02598|TIMP1|7076|TIMP metallopeptidase inhibitor 1	0.528348	denovo_WM_21:46:0.494
chr4	775614	775733	reg1000186.p1	11.682	+	TSC_hg19_v1_chr4_-_775606 BC040652 AK055583	-51	-	TSC_hg19_v1_chr4_+_699570 AK225892 NM_006315 AK057124 AK300290 AK125801	-76043	+	TSC_hg19_v1_chr4_-_683107 AK292010	-92557	-	AK126578 TSC_hg19_v1_chr4_-_819894 AK311921 AB593095 BC002471 NM_006651	44252	-	TSC_hg19_v1_chr4_-_925898 BT007015 D88435	150248	-	BC063606 TSC_hg19_v1_chr4_-_926081 BC008668	150412	-	BC040652|LOC100129917|100129917|uncharacterized LOC100129917##AK055583|LOC100129917|100129917|uncharacterized LOC100129917##AK225892|PCGF3|10336|polycomb group ring finger 3##NM_006315|PCGF3|10336|polycomb group ring finger 3##AK057124|PCGF3|10336|polycomb group ring finger 3##AK300290|PCGF3|10336|polycomb group ring finger 3##AK125801|PCGF3|10336|polycomb group ring finger 3##AK292010|MFSD7|84179|major facilitator superfamily domain containing 7##AK126578|CPLX1|10815|complexin 1##AK311921|CPLX1|10815|complexin 1##AB593095|CPLX1|10815|complexin 1##BC002471|CPLX1|10815|complexin 1##NM_006651|CPLX1|10815|complexin 1##BT007015|GAK|2580|cyclin G associated kinase##D88435|GAK|2580|cyclin G associated kinase##BC063606|GAK|2580|cyclin G associated kinase##BC008668|GAK|2580|cyclin G associated kinase	1.974531	denovo_WM_21:-16:0.981	denovo_WM_21:48:0.966
chr12	120638946	120639084	reg1000155.p1	11.651	+	AK001313 AK129823 M17885 TSC_hg19_v1_chr12_-_120638914 NM_001002 NM_053275	-53	-	AK129754 AK222571 AK304674 BC107717 D28418 TSC_hg19_v1_chr12_-_120638911 AK222468 AK291109	-105	-	BC019014 BC000087 TSC_hg19_v1_chr12_-_120638906 BC070194	-114	-	BX648777 NM_025157	48944	-	TSC_hg19_v1_chr12_-_120703534 AK299486 BC136787 BC136794 BC144410 U14588 AB209034 AK298057 AK314204	64499	-	TSC_hg19_v1_chr12_-_120703574 NM_001080855 NM_001243756 NM_002859	64575	-	AK001313|RPLP0|6175|ribosomal protein, large, P0##AK129823|RPLP0|6175|ribosomal protein, large, P0##M17885|RPLP0|6175|ribosomal protein, large, P0##NM_001002|RPLP0|6175|ribosomal protein, large, P0##NM_053275|RPLP0|6175|ribosomal protein, large, P0##AK129754|RPLP0|6175|ribosomal protein, large, P0##AK222571|RPLP0|6175|ribosomal protein, large, P0##AK304674|RPLP0|6175|ribosomal protein, large, P0##BC107717|RPLP0|6175|ribosomal protein, large, P0##D28418|RPLP0|6175|ribosomal protein, large, P0##AK222468|RPLP0|6175|ribosomal protein, large, P0##AK291109|RPLP0|6175|ribosomal protein, large, P0##BC019014|RPLP0|6175|ribosomal protein, large, P0##BC000087|RPLP0|6175|ribosomal protein, large, P0##BC070194|RPLP0|6175|ribosomal protein, large, P0##BX648777|PXN|5829|paxillin##NM_025157|PXN|5829|paxillin##AK299486|PXN|5829|paxillin##BC136787|PXN|5829|paxillin##BC136794|PXN|5829|paxillin##BC144410|PXN|5829|paxillin##U14588|PXN|5829|paxillin##AB209034|PXN|5829|paxillin##AK298057|PXN|5829|paxillin##AK314204|PXN|5829|paxillin##NM_001080855|PXN|5829|paxillin##NM_001243756|PXN|5829|paxillin##NM_002859|PXN|5829|paxillin	1.501368	denovo_WM_21:-25:0.459	denovo_WM_21:-54:0.993
chr15	93425638	93425770	reg1000179.p1	11.636	+	BC110328 TSC_hg19_v1_chr15_-_93277463	-148315	-	BC045729 TSC_hg19_v1_chr15_-_93198980 BC060873 AK075564 NM_207446	-226825	-	AK057393 NM_153040	-410798	+	AF006514 TSC_hg19_v1_chr15_+_93443553 NM_001042572 NM_001271 AK292850 BC107885	17782	+	TSC_hg19_v1_chr15_+_93443573 BC007347 BC020810	17876	+	AK295909 TSC_hg19_v1_chr15_+_93447798	22056	+	BC110328|FAM174B|400451|family with sequence similarity 174, member B##BC045729|FAM174B|400451|family with sequence similarity 174, member B##BC060873|FAM174B|400451|family with sequence similarity 174, member B##AK075564|FAM174B|400451|family with sequence similarity 174, member B##NM_207446|FAM174B|400451|family with sequence similarity 174, member B##AK057393|C15orf32|145858|chromosome 15 open reading frame 32##NM_153040|C15orf32|145858|chromosome 15 open reading frame 32##AF006514|CHD2|1106|chromodomain helicase DNA binding protein 2##NM_001042572|CHD2|1106|chromodomain helicase DNA binding protein 2##NM_001271|CHD2|1106|chromodomain helicase DNA binding protein 2##AK292850|CHD2|1106|chromodomain helicase DNA binding protein 2##BC107885|CHD2|1106|chromodomain helicase DNA binding protein 2##BC007347|CHD2|1106|chromodomain helicase DNA binding protein 2##BC020810|CHD2|1106|chromodomain helicase DNA binding protein 2##AK295909|CHD2|1106|chromodomain helicase DNA binding protein 2	0.357478	denovo_WM_21:34:0.227
chr4	52709165	52709271	reg1000046.p2	11.633	+	AK025164 NM_025087 BC137387 BC137388	-3720946	+	TSC_hg19_v1_chr4_-_48908795 CR749310 BC032808 AK298305 NM_001014446 NM_152398	-3800439	-	TSC_hg19_v1_chr4_+_48833104 NM_001079840 NM_001079841 NM_017830 AK297864 AF323665 AF324350 AK000462 BC003409 NM_001079839 NM_001079842 NM_001168254 BC088361	-3875967	+	AK124346 NM_001040402 NM_015115 TSC_hg19_v1_chr4_+_52709318 BC053897 AK294896 BX537944 AK027051 D87466 BC041702 AM392554 AM392637 AM392729 AM393240	68	+	CR749811 NM_001024611	174567	-	BT019433 CR456810 DQ893140 DQ896425 EU176433 U29586 TSC_hg19_v1_chr4_-_52904447 AK299765 BC020709 AK289892 U31116 NM_000232	195239	-	AK025164|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##NM_025087|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##BC137387|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##BC137388|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##CR749310|OCIAD2|132299|OCIA domain containing 2##BC032808|OCIAD2|132299|OCIA domain containing 2##AK298305|OCIAD2|132299|OCIA domain containing 2##NM_001014446|OCIAD2|132299|OCIA domain containing 2##NM_152398|OCIAD2|132299|OCIA domain containing 2##NM_001079840|OCIAD1|54940|OCIA domain containing 1##NM_001079841|OCIAD1|54940|OCIA domain containing 1##NM_017830|OCIAD1|54940|OCIA domain containing 1##AK297864|OCIAD1|54940|OCIA domain containing 1##AF323665|OCIAD1|54940|OCIA domain containing 1##AF324350|OCIAD1|54940|OCIA domain containing 1##AK000462|OCIAD1|54940|OCIA domain containing 1##BC003409|OCIAD1|54940|OCIA domain containing 1##NM_001079839|OCIAD1|54940|OCIA domain containing 1##NM_001079842|OCIAD1|54940|OCIA domain containing 1##NM_001168254|OCIAD1|54940|OCIA domain containing 1##BC088361|OCIAD1|54940|OCIA domain containing 1##AK124346|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##NM_001040402|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##NM_015115|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##BC053897|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AK294896|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##BX537944|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AK027051|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##D87466|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##BC041702|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM392554|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM392637|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM392729|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM393240|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##CR749811|LRRC66|339977|leucine rich repeat containing 66##NM_001024611|LRRC66|339977|leucine rich repeat containing 66##BT019433|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##CR456810|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##DQ893140|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##DQ896425|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##EU176433|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##U29586|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##AK299765|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##BC020709|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##AK289892|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##U31116|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##NM_000232|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)	0.479748	denovo_WM_21:53:0.385
chr19	55850794	55850957	reg1000032.p1	11.609	+	BC171904 BC171893 BC171901 TSC_hg19_v1_chr19_-_55836705 NM_001085488	-14186	-	BC016681 TSC_hg19_v1_chr19_+_55813629	-37260	+	TSC_hg19_v1_chr19_+_55813404 AK124999	-37462	+	AK308586 NM_032701 TSC_hg19_v1_chr19_+_55851243 AK304562 BC044889	385	+	BC064548 AK057427 AY152398 BC026123 NM_144613	15247	-	TSC_hg19_v1_chr19_-_55874621 BC031875 AK127979 NM_001145402	23739	-	BC171904|TMEM150B|284417|transmembrane protein 150B##BC171893|TMEM150B|284417|transmembrane protein 150B##BC171901|TMEM150B|284417|transmembrane protein 150B##NM_001085488|TMEM150B|284417|transmembrane protein 150B##BC016681|BRSK1|84446|BR serine/threonine kinase 1##AK124999|BRSK1|84446|BR serine/threonine kinase 1##AK308586|SUV420H2|84787|suppressor of variegation 4-20 homolog 2 (Drosophila)##NM_032701|SUV420H2|84787|suppressor of variegation 4-20 homolog 2 (Drosophila)##AK304562|SUV420H2|84787|suppressor of variegation 4-20 homolog 2 (Drosophila)##BC044889|SUV420H2|84787|suppressor of variegation 4-20 homolog 2 (Drosophila)##BC064548|COX6B2|125965|cytochrome c oxidase subunit VIb polypeptide 2 (testis)##AK057427|COX6B2|125965|cytochrome c oxidase subunit VIb polypeptide 2 (testis)##AY152398|COX6B2|125965|cytochrome c oxidase subunit VIb polypeptide 2 (testis)##BC026123|COX6B2|125965|cytochrome c oxidase subunit VIb polypeptide 2 (testis)##NM_144613|COX6B2|125965|cytochrome c oxidase subunit VIb polypeptide 2 (testis)##BC031875|FAM71E2|284418|family with sequence similarity 71, member E2##AK127979|FAM71E2|284418|family with sequence similarity 71, member E2##NM_001145402|FAM71E2|284418|family with sequence similarity 71, member E2	0.671833	denovo_WM_21:68:0.652
chr7	77427850	77427996	reg1000097.p1	11.599	+	TSC_hg19_v1_chr7_-_77427744 AF260336 NM_032936	-176	-	BC012192 TSC_hg19_v1_chr7_-_77427680 BC065930	-255	-	TSC_hg19_v1_chr7_+_77325775 NM_198467 BC059402 BC046353	-102166	+	TSC_hg19_v1_chr7_+_77428194 NM_001127358 NM_001127360 AK225854 AK090643 AX746556 AK308289	218	+	BC067742 TSC_hg19_v1_chr7_+_77428204 AL136883	287	+	BC022419 NM_001127357 NM_001127359 NM_020432 AL831969 BC127093 BC127094 AB463202 AM392983 AM393200 CU688318 CU692612	41586	+	AF260336|TMEM60|85025|transmembrane protein 60##NM_032936|TMEM60|85025|transmembrane protein 60##BC012192|TMEM60|85025|transmembrane protein 60##BC065930|TMEM60|85025|transmembrane protein 60##NM_198467|RSBN1L|222194|round spermatid basic protein 1-like##BC059402|RSBN1L|222194|round spermatid basic protein 1-like##BC046353|RSBN1L|222194|round spermatid basic protein 1-like##NM_001127358|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127360|PHTF2|57157|putative homeodomain transcription factor 2##AK225854|PHTF2|57157|putative homeodomain transcription factor 2##AK090643|PHTF2|57157|putative homeodomain transcription factor 2##AK308289|PHTF2|57157|putative homeodomain transcription factor 2##BC067742|PHTF2|57157|putative homeodomain transcription factor 2##AL136883|PHTF2|57157|putative homeodomain transcription factor 2##BC022419|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127357|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127359|PHTF2|57157|putative homeodomain transcription factor 2##NM_020432|PHTF2|57157|putative homeodomain transcription factor 2##AL831969|PHTF2|57157|putative homeodomain transcription factor 2##BC127093|PHTF2|57157|putative homeodomain transcription factor 2##BC127094|PHTF2|57157|putative homeodomain transcription factor 2##AM392983|PHTF2|57157|putative homeodomain transcription factor 2##AM393200|PHTF2|57157|putative homeodomain transcription factor 2	0.076408	
chr17	7475890	7476026	reg1000157.p1	11.556	+	TSC_hg19_v1_chr17_+_7465319 BC080658 AL834294 AF199459 AY008763	-10529	+	TSC_hg19_v1_chr17_+_7465295 NM_015670	-10662	+	AK225556 AK314518 AK301221 AF046888 AF114011 AY081050 AF114013 AF114012 AF184972 AY358880 BC008042 TSC_hg19_v1_chr17_+_7462318 DQ149579 EF211088 EU831984 EU832077 AF136294 BT019561 BT019562 CR542040 CR542073	-13748	+	NM_001204510 NM_001416 TSC_hg19_v1_chr17_+_7476143 AK130082 AK291971 AK296664 AK303599 AK312630 D13748 AK289453 AK297916 AK303222 AK309274 BC009585 BC006210 BC073752 AB385527 CU679411 DQ893044 DQ896288 BT019880 BT019881 BC032078	134	+	NM_001251 NM_001040059 TSC_hg19_v1_chr17_+_7482934 BC015557	6911	+	TSC_hg19_v1_chr17_+_7482955 AK290238 AK298055 BX647524 AK222492 AK222514	6990	+	BC080658|SENP3|26168|SUMO1/sentrin/SMT3 specific peptidase 3##AL834294|SENP3|26168|SUMO1/sentrin/SMT3 specific peptidase 3##AF199459|SENP3|26168|SUMO1/sentrin/SMT3 specific peptidase 3##AY008763|SENP3|26168|SUMO1/sentrin/SMT3 specific peptidase 3##NM_015670|SENP3|26168|SUMO1/sentrin/SMT3 specific peptidase 3##AK225556|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AK314518|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AK301221|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AF046888|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AF114011|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AY081050|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AF114013|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AF114012|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AF184972|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AY358880|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##BC008042|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##DQ149579|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##EF211088|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##EU831984|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##EU832077|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AF136294|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##BT019561|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##BT019562|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##CR542040|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##CR542073|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##NM_001204510|EIF4A1|1973|eukaryotic translation initiation factor 4A1##NM_001416|EIF4A1|1973|eukaryotic translation initiation factor 4A1##AK130082|EIF4A1|1973|eukaryotic translation initiation factor 4A1##AK291971|EIF4A1|1973|eukaryotic translation initiation factor 4A1##AK296664|EIF4A1|1973|eukaryotic translation initiation factor 4A1##AK303599|EIF4A1|1973|eukaryotic translation initiation factor 4A1##AK312630|EIF4A1|1973|eukaryotic translation initiation factor 4A1##D13748|EIF4A1|1973|eukaryotic translation initiation factor 4A1##AK289453|EIF4A1|1973|eukaryotic translation initiation factor 4A1##AK297916|EIF4A1|1973|eukaryotic translation initiation factor 4A1##AK303222|EIF4A1|1973|eukaryotic translation initiation factor 4A1##AK309274|EIF4A1|1973|eukaryotic translation initiation factor 4A1##BC009585|EIF4A1|1973|eukaryotic translation initiation factor 4A1##BC006210|EIF4A1|1973|eukaryotic translation initiation factor 4A1##BC073752|EIF4A1|1973|eukaryotic translation initiation factor 4A1##DQ893044|EIF4A1|1973|eukaryotic translation initiation factor 4A1##DQ896288|EIF4A1|1973|eukaryotic translation initiation factor 4A1##BT019880|EIF4A1|1973|eukaryotic translation initiation factor 4A1##BT019881|EIF4A1|1973|eukaryotic translation initiation factor 4A1##BC032078|EIF4A1|1973|eukaryotic translation initiation factor 4A1##NM_001251|CD68|968|CD68 molecule##NM_001040059|CD68|968|CD68 molecule##BC015557|CD68|968|CD68 molecule##AK290238|CD68|968|CD68 molecule##AK298055|CD68|968|CD68 molecule##BX647524|CD68|968|CD68 molecule##AK222492|CD68|968|CD68 molecule##AK222514|CD68|968|CD68 molecule	0.036815	
chr8	47368577	47368662	reg1000100.p1	11.516	+	AY462869 AY462870 NM_001002920 NM_001005365 AB464430	-4221014	+	TSC_hg19_v1_chr8_+_42995654 BC042037	-4372972	+	TSC_hg19_v1_chr8_+_42995639 AK304441	-4372986	+	TSC_hg19_v1_chr8_+_48173495 NM_001080394	804876	+	TSC_hg19_v1_chr8_+_48173521 AK303579	804900	+	TSC_hg19_v1_chr8_+_48173532 AK294248 AK309842	804913	+	AY462869|POTEA|340441|POTE ankyrin domain family, member A##AY462870|POTEA|340441|POTE ankyrin domain family, member A##NM_001002920|POTEA|340441|POTE ankyrin domain family, member A##NM_001005365|POTEA|340441|POTE ankyrin domain family, member A##BC042037|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase##AK304441|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase##NM_001080394|KIAA0146|23514|KIAA0146##AK303579|KIAA0146|23514|KIAA0146##AK294248|KIAA0146|23514|KIAA0146##AK309842|KIAA0146|23514|KIAA0146	0.0	
chr10	5932012	5932132	reg1000127.p1	11.500	+	TSC_hg19_v1_chr10_-_5931834 BC067892 NM_001009941 NM_001009943 NM_019046	-216	-	TSC_hg19_v1_chr10_-_5855394 Y13286 AK297177 AK297554 AK312485 NM_001115156 NM_001494	-76637	-	BX648038 AB451295 AB451429 BT006868 CR457073 D13988 DQ890573 DQ893733 BC005145 TSC_hg19_v1_chr10_-_5855330 AK309360	-76806	-	TSC_hg19_v1_chr10_+_5932205 AK095343	127	+	TSC_hg19_v1_chr10_+_5932214 NM_178150	139	+	TSC_hg19_v1_chr10_+_5932218 AF456237 BC113375 BC113377 AF454502 BC110884	172	+	BC067892|ANKRD16|54522|ankyrin repeat domain 16##NM_001009941|ANKRD16|54522|ankyrin repeat domain 16##NM_001009943|ANKRD16|54522|ankyrin repeat domain 16##NM_019046|ANKRD16|54522|ankyrin repeat domain 16##Y13286|GDI2|2665|GDP dissociation inhibitor 2##AK297177|GDI2|2665|GDP dissociation inhibitor 2##AK297554|GDI2|2665|GDP dissociation inhibitor 2##AK312485|GDI2|2665|GDP dissociation inhibitor 2##NM_001115156|GDI2|2665|GDP dissociation inhibitor 2##NM_001494|GDI2|2665|GDP dissociation inhibitor 2##BX648038|GDI2|2665|GDP dissociation inhibitor 2##AB451295|GDI2|2665|GDP dissociation inhibitor 2##AB451429|GDI2|2665|GDP dissociation inhibitor 2##BT006868|GDI2|2665|GDP dissociation inhibitor 2##CR457073|GDI2|2665|GDP dissociation inhibitor 2##D13988|GDI2|2665|GDP dissociation inhibitor 2##DQ890573|GDI2|2665|GDP dissociation inhibitor 2##DQ893733|GDI2|2665|GDP dissociation inhibitor 2##BC005145|GDI2|2665|GDP dissociation inhibitor 2##AK309360|GDI2|2665|GDP dissociation inhibitor 2##AK095343|FBXO18|84893|F-box protein, helicase, 18##NM_178150|FBXO18|84893|F-box protein, helicase, 18##AF456237|FBXO18|84893|F-box protein, helicase, 18##BC113375|FBXO18|84893|F-box protein, helicase, 18##BC113377|FBXO18|84893|F-box protein, helicase, 18##AF454502|FBXO18|84893|F-box protein, helicase, 18##BC110884|FBXO18|84893|F-box protein, helicase, 18	0.867286	denovo_WM_21:32:0.689
chr11	105893162	105893305	reg1000088.p2	11.475	+	TSC_hg19_v1_chr11_-_105892952 AL834523 BC041118 AB058729 NM_032424	-274	-	BC015199 NM_001112812 BC146816	-411803	+	NM_000829 NM_001077243 NM_001077244 TSC_hg19_v1_chr11_+_105480799 BC045546 BC142654 BC150209 BC035610	-412344	+	AF136978 AF151057 AF151838 AF302110 NM_015423 TSC_hg19_v1_chr11_+_105948388 BC016728 AK312529 BC015470 AK293362 AB463408 CU677695 DQ891342 DQ894524	55132	+	NM_152433 NM_198439	55231	-	BC085622 TSC_hg19_v1_chr11_-_106889260 BC130484 BC130488 BC144033 NM_000855 X63282 Z50053	995855	-	AL834523|KIAA1826|84437|KIAA1826##BC041118|KIAA1826|84437|KIAA1826##AB058729|KIAA1826|84437|KIAA1826##NM_032424|KIAA1826|84437|KIAA1826##BC015199|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##NM_001112812|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##BC146816|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##NM_000829|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##NM_001077243|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##NM_001077244|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##BC045546|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##BC142654|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##BC150209|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##BC035610|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##AF136978|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AF151057|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AF151838|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AF302110|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##NM_015423|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##BC016728|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AK312529|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##BC015470|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AK293362|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##DQ891342|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##DQ894524|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##NM_152433|KBTBD3|143879|kelch repeat and BTB (POZ) domain containing 3##NM_198439|KBTBD3|143879|kelch repeat and BTB (POZ) domain containing 3##BC130484|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##BC130488|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##BC144033|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##NM_000855|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##X63282|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##Z50053|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2	0.0	
chr14	73925284	73925415	reg1000063.p1	11.415	+	TSC_hg19_v1_chr14_-_73925284 BC068476 NM_001005743 NM_001005744 NM_001005745 NM_003744	-58	-	TSC_hg19_v1_chr14_-_73925274 BX248781	-82	-	BX248775 TSC_hg19_v1_chr14_-_73925232 BX647137 AF171938 AF171939 AF171940 AF171941 BX248073 AF015040 AK315130 BC020788	-117	-	TSC_hg19_v1_chr14_+_73957638 NM_024644	32276	+	TSC_hg19_v1_chr14_+_73957669 AK299994 AK025455 BC011350	32314	+	TSC_hg19_v1_chr14_+_73957674 AY390535	32324	+	BC068476|NUMB|8650|numb homolog (Drosophila)##NM_001005743|NUMB|8650|numb homolog (Drosophila)##NM_001005744|NUMB|8650|numb homolog (Drosophila)##NM_001005745|NUMB|8650|numb homolog (Drosophila)##NM_003744|NUMB|8650|numb homolog (Drosophila)##BX248781|NUMB|8650|numb homolog (Drosophila)##BX248775|NUMB|8650|numb homolog (Drosophila)##BX647137|NUMB|8650|numb homolog (Drosophila)##AF171938|NUMB|8650|numb homolog (Drosophila)##AF171939|NUMB|8650|numb homolog (Drosophila)##AF171940|NUMB|8650|numb homolog (Drosophila)##AF171941|NUMB|8650|numb homolog (Drosophila)##BX248073|NUMB|8650|numb homolog (Drosophila)##AF015040|NUMB|8650|numb homolog (Drosophila)##AK315130|NUMB|8650|numb homolog (Drosophila)##BC020788|NUMB|8650|numb homolog (Drosophila)##NM_024644|C14orf169|79697|chromosome 14 open reading frame 169##AK299994|C14orf169|79697|chromosome 14 open reading frame 169##AK025455|C14orf169|79697|chromosome 14 open reading frame 169##BC011350|C14orf169|79697|chromosome 14 open reading frame 169##AY390535|C14orf169|79697|chromosome 14 open reading frame 169	1.2862	denovo_WM_21:3:0.990
chr17	1619644	1619800	reg1000182.p1	11.406	+	BC119720 BC119721 TSC_hg19_v1_chr17_-_1619503 BX648321 BX640650	-234	-	NM_001164407	-6061	-	TSC_hg19_v1_chr17_-_1588132 BC000579 BC064370 NM_006445	-31568	-	AK298567 NM_001163673 NM_152348 AK091136 AX746799 BC114519 BC114568	133	+	AK127946 NM_001163811 TSC_hg19_v1_chr17_+_1628006	8198	+	TSC_hg19_v1_chr17_+_1628049 NM_001163809	8356	+	BC119720|MIR22HG|84981|MIR22 host gene (non-protein coding)##BC119721|MIR22HG|84981|MIR22 host gene (non-protein coding)##BX648321|MIR22HG|84981|MIR22 host gene (non-protein coding)##BX640650|MIR22HG|84981|MIR22 host gene (non-protein coding)##NM_001164407|TLCD2|727910|TLC domain containing 2##BC000579|PRPF8|10594|PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae)##BC064370|PRPF8|10594|PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae)##NM_006445|PRPF8|10594|PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae)##AK298567|WDR81|124997|WD repeat domain 81##NM_001163673|WDR81|124997|WD repeat domain 81##NM_152348|WDR81|124997|WD repeat domain 81##AK091136|WDR81|124997|WD repeat domain 81##BC114519|WDR81|124997|WD repeat domain 81##BC114568|WDR81|124997|WD repeat domain 81##AK127946|WDR81|124997|WD repeat domain 81##NM_001163811|WDR81|124997|WD repeat domain 81##NM_001163809|WDR81|124997|WD repeat domain 81	0.661912	denovo_WM_21:33:0.332	denovo_WM_21:-38:0.330
chr15	75531972	75532149	reg1000202.p2	11.383	+	TSC_hg19_v1_chr15_+_75494242 AF495726 BC011379 AK125604	-37817	+	BC110367 TSC_hg19_v1_chr15_+_75494233	-37827	+	TSC_hg19_v1_chr15_+_75494220 NM_015492 AK125111	-37848	+	AF263742 NM_001164404	18838	+	AF263742 NM_001145224	43118	+	NM_017828 AK225716 BC033744 AK000459 AK293708 AK057145 AK124968 AK314740 BC069195 BC068998 AL136872	96334	+	AF495726|C15orf39|56905|chromosome 15 open reading frame 39##BC011379|C15orf39|56905|chromosome 15 open reading frame 39##AK125604|C15orf39|56905|chromosome 15 open reading frame 39##BC110367|C15orf39|56905|chromosome 15 open reading frame 39##NM_015492|C15orf39|56905|chromosome 15 open reading frame 39##AK125111|C15orf39|56905|chromosome 15 open reading frame 39##AF263742|GOLGA6A|342096|golgin A6 family, member A##NM_001164404|GOLGA6C|653641|golgin A6 family, member C##AF263742|GOLGA6A|342096|golgin A6 family, member A##NM_001145224|GOLGA6D|653643|golgin A6 family, member D##NM_017828|COMMD4|54939|COMM domain containing 4##AK225716|COMMD4|54939|COMM domain containing 4##BC033744|COMMD4|54939|COMM domain containing 4##AK000459|COMMD4|54939|COMM domain containing 4##AK293708|COMMD4|54939|COMM domain containing 4##AK057145|COMMD4|54939|COMM domain containing 4##AK314740|COMMD4|54939|COMM domain containing 4##BC069195|COMMD4|54939|COMM domain containing 4##BC068998|COMMD4|54939|COMM domain containing 4##AL136872|COMMD4|54939|COMM domain containing 4	2.809236	denovo_WM_21:17:0.650	denovo_WM_21:-23:0.210	denovo_WM_21:58:0.650	denovo_WM_21:-60:0.650	denovo_WM_21:-101:0.650
chr3	107241683	107241798	reg1000197.p1	11.363	+	AK058091 NM_032600 BC030780 AF367469 CU689006 DQ890829 DQ890830 DQ893985	-145430	+	TSC_hg19_v1_chr3_+_106959546 AK309100 BC039550 AK055934	-282148	+	TSC_hg19_v1_chr3_-_106959482 BC036229	-282261	-	NM_001142568 NM_020235 AF283775 AF454941 TSC_hg19_v1_chr3_+_107241834 AF161457 AK314434 AK057010 AK291757 AF276949 BC131718	109	+	AB590342 BT006907 DQ890756 DQ891811 DQ893920 TSC_hg19_v1_chr3_-_107809906 BC010016 BC012884 X69398 BC037306 AK289813 Z25521 NM_001777 NM_198793	568133	-	AB014762 AB528382 CR457251 CU680102 DQ893050 DQ896298 TSC_hg19_v1_chr3_-_107941272 AK298854 AF139576 AK001009 BC011899 NM_018010	699552	-	AK058091|CCDC54|84692|coiled-coil domain containing 54##NM_032600|CCDC54|84692|coiled-coil domain containing 54##BC030780|CCDC54|84692|coiled-coil domain containing 54##AF367469|CCDC54|84692|coiled-coil domain containing 54##DQ890829|CCDC54|84692|coiled-coil domain containing 54##DQ890830|CCDC54|84692|coiled-coil domain containing 54##DQ893985|CCDC54|84692|coiled-coil domain containing 54##AK309100|LOC344595|344595|uncharacterized LOC344595##BC039550|LOC344595|344595|uncharacterized LOC344595##AK055934|LOC344595|344595|uncharacterized LOC344595##NM_001142568|BBX|56987|bobby sox homolog (Drosophila)##NM_020235|BBX|56987|bobby sox homolog (Drosophila)##AF283775|BBX|56987|bobby sox homolog (Drosophila)##AF454941|BBX|56987|bobby sox homolog (Drosophila)##AF161457|BBX|56987|bobby sox homolog (Drosophila)##AK314434|BBX|56987|bobby sox homolog (Drosophila)##AK057010|BBX|56987|bobby sox homolog (Drosophila)##AK291757|BBX|56987|bobby sox homolog (Drosophila)##AF276949|BBX|56987|bobby sox homolog (Drosophila)##BC131718|BBX|56987|bobby sox homolog (Drosophila)##BT006907|CD47|961|CD47 molecule##DQ890756|CD47|961|CD47 molecule##DQ891811|CD47|961|CD47 molecule##DQ893920|CD47|961|CD47 molecule##BC010016|CD47|961|CD47 molecule##BC012884|CD47|961|CD47 molecule##X69398|CD47|961|CD47 molecule##BC037306|CD47|961|CD47 molecule##AK289813|CD47|961|CD47 molecule##Z25521|CD47|961|CD47 molecule##NM_001777|CD47|961|CD47 molecule##NM_198793|CD47|961|CD47 molecule##AB014762|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##CR457251|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##DQ893050|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##DQ896298|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##AK298854|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##AF139576|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##AK001009|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##BC011899|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##NM_018010|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)	0.682514	denovo_WM_21:24:0.683
chr2	73298466	73298593	reg1000204.p1	11.357	+	TSC_hg19_v1_chr2_-_73298414 AK024193	-93	-	BC045762 NM_004097 TSC_hg19_v1_chr2_+_73144689	-153876	+	TSC_hg19_v1_chr2_+_73114529 NM_003124 AK222942 M76231 BC017310 AK291856 DQ891699 DQ894880	-183999	+	TSC_hg19_v1_chr2_-_73298842 AL833454 AK314770 AK289731 AY044437 BC101311 BC101312 BC101313 NM_144579	360	-	AK023823 TSC_hg19_v1_chr2_-_73316784	18254	-	DQ890991 DQ894168 TSC_hg19_v1_chr2_-_73339998 BC099902	41455	-	AK024193|SFXN5|94097|sideroflexin 5##BC045762|EMX1|2016|empty spiracles homeobox 1##NM_004097|EMX1|2016|empty spiracles homeobox 1##NM_003124|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##AK222942|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##M76231|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##BC017310|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##AK291856|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##DQ891699|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##DQ894880|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##AL833454|SFXN5|94097|sideroflexin 5##AK314770|SFXN5|94097|sideroflexin 5##AK289731|SFXN5|94097|sideroflexin 5##AY044437|SFXN5|94097|sideroflexin 5##BC101311|SFXN5|94097|sideroflexin 5##BC101312|SFXN5|94097|sideroflexin 5##BC101313|SFXN5|94097|sideroflexin 5##NM_144579|SFXN5|94097|sideroflexin 5##AK023823|RAB11FIP5|26056|RAB11 family interacting protein 5 (class I)##DQ890991|RAB11FIP5|26056|RAB11 family interacting protein 5 (class I)##DQ894168|RAB11FIP5|26056|RAB11 family interacting protein 5 (class I)##BC099902|RAB11FIP5|26056|RAB11 family interacting protein 5 (class I)	2.746027	denovo_WM_21:0:0.933	denovo_WM_21:42:0.904	denovo_WM_21:-69:0.909
chr19	19496325	19496445	reg1000060.p1	11.329	+	TSC_hg19_v1_chr19_+_19431662 AB385396	-64721	+	TSC_hg19_v1_chr19_+_19431637 NM_015329 AB020699	-64751	+	AK096152 AK292085 AK294618 AK301119 BC119728 BC119729 BC142988 TSC_hg19_v1_chr19_-_19431319 NM_172231	-65034	-	TSC_hg19_v1_chr19_+_19496634 NM_017660 AK303482	321	+	AB464723 DQ891603 DQ894797 AF329483 AK058166 AK313767 BC014611 NM_032037 AF348077	129980	-	TSC_hg19_v1_chr19_+_19626536 AF261134	130180	+	NM_015329|MAU2|23383|MAU2 chromatid cohesion factor homolog (C. elegans)##AB020699|MAU2|23383|MAU2 chromatid cohesion factor homolog (C. elegans)##AK096152|SUGP1|57794|SURP and G patch domain containing 1##AK292085|SUGP1|57794|SURP and G patch domain containing 1##AK294618|SUGP1|57794|SURP and G patch domain containing 1##AK301119|SUGP1|57794|SURP and G patch domain containing 1##BC119728|SUGP1|57794|SURP and G patch domain containing 1##BC119729|SUGP1|57794|SURP and G patch domain containing 1##BC142988|SUGP1|57794|SURP and G patch domain containing 1##NM_172231|SUGP1|57794|SURP and G patch domain containing 1##NM_017660|GATAD2A|54815|GATA zinc finger domain containing 2A##AK303482|GATAD2A|54815|GATA zinc finger domain containing 2A##DQ891603|TSSK6|83983|testis-specific serine kinase 6##DQ894797|TSSK6|83983|testis-specific serine kinase 6##AF329483|TSSK6|83983|testis-specific serine kinase 6##AK058166|TSSK6|83983|testis-specific serine kinase 6##AK313767|TSSK6|83983|testis-specific serine kinase 6##BC014611|TSSK6|83983|testis-specific serine kinase 6##NM_032037|TSSK6|83983|testis-specific serine kinase 6##AF348077|TSSK6|83983|testis-specific serine kinase 6##AF261134|NDUFA13|51079|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	0.0	
chr12	113658900	113659035	reg1000075.p1	11.328	+	TSC_hg19_v1_chr12_-_113658844 BC013151 NM_138451 AK127152	-105	-	AK075358 AK123762 AK027741 TSC_hg19_v1_chr12_+_113623525 AY007158 AK027733 NM_032848 AK222908	-35494	+	BC005848 BC001132 BC001848 AY148094 TSC_hg19_v1_chr12_-_113623279 AF478457 NM_001111322 NM_024072	-35720	-	TSC_hg19_v1_chr12_+_113659268 AK093490 AX748162 NM_001143819 NM_017901 AY083666	276	+	AB032995 BC152423 TSC_hg19_v1_chr12_+_113659278 BC136795 BC136796	313	+	TSC_hg19_v1_chr12_+_113659290 BC142664 AK057414 BC150203	336	+	BC013151|IQCD|115811|IQ motif containing D##NM_138451|IQCD|115811|IQ motif containing D##AK127152|IQCD|115811|IQ motif containing D##AK075358|C12orf52|84934|chromosome 12 open reading frame 52##AK123762|C12orf52|84934|chromosome 12 open reading frame 52##AK027741|C12orf52|84934|chromosome 12 open reading frame 52##AY007158|C12orf52|84934|chromosome 12 open reading frame 52##AK027733|C12orf52|84934|chromosome 12 open reading frame 52##NM_032848|C12orf52|84934|chromosome 12 open reading frame 52##AK222908|C12orf52|84934|chromosome 12 open reading frame 52##BC005848|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##BC001132|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##BC001848|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##AY148094|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##AF478457|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##NM_001111322|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##NM_024072|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##AK093490|TPCN1|53373|two pore segment channel 1##NM_001143819|TPCN1|53373|two pore segment channel 1##NM_017901|TPCN1|53373|two pore segment channel 1##AY083666|TPCN1|53373|two pore segment channel 1##AB032995|TPCN1|53373|two pore segment channel 1##BC152423|TPCN1|53373|two pore segment channel 1##BC136795|TPCN1|53373|two pore segment channel 1##BC136796|TPCN1|53373|two pore segment channel 1##BC142664|TPCN1|53373|two pore segment channel 1##AK057414|TPCN1|53373|two pore segment channel 1##BC150203|TPCN1|53373|two pore segment channel 1	1.043192	denovo_WM_21:3:0.978
chrX	58377736	58377828	reg1000124.p1	11.313	+	EU446736 TSC_hg19_v1_chrX_-_57936884 BC059356 AK292686 AK122815 NM_007156	-440823	-	TSC_hg19_v1_chrX_+_57618452 AK289766 AB384714	-759322	+	NM_007157	-759514	+	BC112360 TSC_hg19_v1_chrX_-_62571212 AK126931 AL833314 NM_001012968	4193417	-	TSC_hg19_v1_chrX_-_62648209 BC048208 AK129670	4270485	-	TSC_hg19_v1_chrX_-_62780938 AK001756 AL080202	4403085	-	EU446736|ZXDA|7789|zinc finger, X-linked, duplicated A##BC059356|ZXDA|7789|zinc finger, X-linked, duplicated A##AK292686|ZXDA|7789|zinc finger, X-linked, duplicated A##AK122815|ZXDA|7789|zinc finger, X-linked, duplicated A##NM_007156|ZXDA|7789|zinc finger, X-linked, duplicated A##AK289766|ZXDB|158586|zinc finger, X-linked, duplicated B##NM_007157|ZXDB|158586|zinc finger, X-linked, duplicated B##BC112360|SPIN4|139886|spindlin family, member 4##AK126931|SPIN4|139886|spindlin family, member 4##AL833314|SPIN4|139886|spindlin family, member 4##NM_001012968|SPIN4|139886|spindlin family, member 4##BC048208|LOC92249|92249|uncharacterized LOC92249##AK129670|LOC92249|92249|uncharacterized LOC92249##AK001756|LOC92249|92249|uncharacterized LOC92249##AL080202|LOC92249|92249|uncharacterized LOC92249	0.0	
chr16	30382259	30382443	reg1000056.p2	11.300	+	TSC_hg19_v1_chr16_-_30381505 AB527435 BC015680 NM_015527	-827	-	NM_006110 TSC_hg19_v1_chr16_-_30366682	-15669	-	AK315708 TSC_hg19_v1_chr16_-_30366603 BC000495 BC001947 AF104222	-15751	-	AK314082 M21812 X57543 BC012571 BX649054 NM_013292 TSC_hg19_v1_chr16_+_30386122 AF363061	3759	+	NM_001214906 NM_001214907	7282	+	BC012161 AK301045 AF085235 AY034176 TSC_hg19_v1_chr16_-_30393883	11525	-	NM_015527|TBC1D10B|26000|TBC1 domain family, member 10B##NM_006110|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##AK315708|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##BC000495|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##BC001947|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##AF104222|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##AK314082|MYLPF|29895|myosin light chain, phosphorylatable, fast skeletal muscle##M21812|MYLPF|29895|myosin light chain, phosphorylatable, fast skeletal muscle##X57543|MYLPF|29895|myosin light chain, phosphorylatable, fast skeletal muscle##BC012571|MYLPF|29895|myosin light chain, phosphorylatable, fast skeletal muscle##BX649054|MYLPF|29895|myosin light chain, phosphorylatable, fast skeletal muscle##NM_013292|MYLPF|29895|myosin light chain, phosphorylatable, fast skeletal muscle##AF363061|MYLPF|29895|myosin light chain, phosphorylatable, fast skeletal muscle##NM_001214906|ZNF48|197407|zinc finger protein 48##NM_001214907|ZNF48|197407|zinc finger protein 48##BC012161|SEPT1|1731|septin 1##AK301045|SEPT1|1731|septin 1##AF085235|SEPT1|1731|septin 1##AY034176|SEPT1|1731|septin 1	1.232823	denovo_WM_21:40:0.208	denovo_WM_21:98:0.972
chr1	143913146	143913271	reg1000014.p1	11.289	+	AK307197 TSC_hg19_v1_chr1_-_143913122 AB096683 NM_207418	-78	-	HQ258079 BC130376 BC130378 NM_001123068	-145344	-	BC071624 BC132962 AK097058 AK310056 TSC_hg19_v1_chr1_-_143744413 AK310186 AK309393	-168803	-	BC130376 BC130378 AB084917 NM_001135789 NM_001143883 NM_178230	451016	-	BC061517 BC073170 BC009950 BC094809 TSC_hg19_v1_chr1_-_144520932	607723	-	TSC_hg19_v1_chr1_-_144520998 BC063535 BC021732	607798	-	AK307197|FAM72D|728833|family with sequence similarity 72, member D##AB096683|FAM72D|728833|family with sequence similarity 72, member D##NM_207418|FAM72D|728833|family with sequence similarity 72, member D##HQ258079|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC130376|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC130378|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##NM_001123068|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC071624|FLJ39739|388685|uncharacterized FLJ39739##BC132962|LOC100286793|100286793|uncharacterized LOC100286793##AK097058|FLJ39739|388685|uncharacterized FLJ39739##AK310056|FLJ39739|388685|uncharacterized FLJ39739##AK310186|FLJ39739|388685|uncharacterized FLJ39739##AK309393|FLJ39739|388685|uncharacterized FLJ39739##BC130376|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC130378|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##AB084917|PPIAL4A|164022|peptidylprolyl isomerase A (cyclophilin A)-like 4A##NM_001135789|PPIAL4C|653598|peptidylprolyl isomerase A (cyclophilin A)-like 4C##NM_001143883|PPIAL4B|653505|peptidylprolyl isomerase A (cyclophilin A)-like 4B##NM_178230|PPIAL4A|164022|peptidylprolyl isomerase A (cyclophilin A)-like 4A##BC061517|LOC728855|728855|uncharacterized LOC728855##BC073170|LOC728855|728855|uncharacterized LOC728855##BC009950|LOC728855|728855|uncharacterized LOC728855##BC094809|LOC728855|728855|uncharacterized LOC728855##BC063535|LOC728855|728855|uncharacterized LOC728855##BC021732|LOC728855|728855|uncharacterized LOC728855	0.0	
chr1	153895512	153895680	reg1000212.p1	11.261	+	AK094665 NM_020699 TSC_hg19_v1_chr1_-_153895452	-145	-	BC003041 BC009916 NM_024330 AK075377 TSC_hg19_v1_chr1_+_153747897 AK123997 AY358409 AK074134 DQ893429 DQ895951 AK027499 BC029792	-147730	+	TSC_hg19_v1_chr1_+_153700548 BX640950 CR749376 CR627233 BC116458 AK290025 CR749212 BX640786 NM_023015	-195043	+	TSC_hg19_v1_chr1_-_153919148 AB007945 NM_014856	23550	-	AY726597 AK096382 BC053562 TSC_hg19_v1_chr1_-_153931074 AF289574	35397	-	TSC_hg19_v1_chr1_-_153931089 AK223559	35488	-	AK094665|GATAD2B|57459|GATA zinc finger domain containing 2B##NM_020699|GATAD2B|57459|GATA zinc finger domain containing 2B##BC003041|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##BC009916|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##NM_024330|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK075377|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK123997|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AY358409|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK074134|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##DQ893429|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##DQ895951|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK027499|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##BC029792|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##BX640950|INTS3|65123|integrator complex subunit 3##CR749376|INTS3|65123|integrator complex subunit 3##CR627233|INTS3|65123|integrator complex subunit 3##BC116458|INTS3|65123|integrator complex subunit 3##AK290025|INTS3|65123|integrator complex subunit 3##CR749212|INTS3|65123|integrator complex subunit 3##BX640786|INTS3|65123|integrator complex subunit 3##NM_023015|INTS3|65123|integrator complex subunit 3##AB007945|DENND4B|9909|DENN/MADD domain containing 4B##NM_014856|DENND4B|9909|DENN/MADD domain containing 4B##AY726597|CRTC2|200186|CREB regulated transcription coactivator 2##AK096382|CRTC2|200186|CREB regulated transcription coactivator 2##BC053562|CRTC2|200186|CREB regulated transcription coactivator 2##AF289574|CRTC2|200186|CREB regulated transcription coactivator 2##AK223559|CRTC2|200186|CREB regulated transcription coactivator 2	0.011441	
chr20	40247058	40247168	reg1000161.p1	11.255	+	TSC_hg19_v1_chr20_-_40247013 BC039860 BC040016 AK296955 BC012516 AY034072 NM_032221	-52	-	AB089149 NM_052846	-251616	-	TSC_hg19_v1_chr20_+_39969434 BX647082 NM_022896 BC140806 BC144598	-277598	+	AB006621 BC153300 TSC_hg19_v1_chr20_-_41818547 AF043644 NM_007050 NM_133170	1571397	-	TSC_hg19_v1_chr20_+_42086514 NM_006275	1839379	+	TSC_hg19_v1_chr20_+_42086535 AK291203 AK300411 AB208976 BC006832 U30828 U30829 U30883 CU675469 AB451251 AB451375	1839490	+	BC039860|CHD6|84181|chromodomain helicase DNA binding protein 6##BC040016|CHD6|84181|chromodomain helicase DNA binding protein 6##AK296955|CHD6|84181|chromodomain helicase DNA binding protein 6##BC012516|CHD6|84181|chromodomain helicase DNA binding protein 6##AY034072|CHD6|84181|chromodomain helicase DNA binding protein 6##NM_032221|CHD6|84181|chromodomain helicase DNA binding protein 6##AB089149|EMILIN3|90187|elastin microfibril interfacer 3##NM_052846|EMILIN3|90187|elastin microfibril interfacer 3##BX647082|LPIN3|64900|lipin 3##NM_022896|LPIN3|64900|lipin 3##BC140806|LPIN3|64900|lipin 3##BC144598|LPIN3|64900|lipin 3##AB006621|PTPRT|11122|protein tyrosine phosphatase, receptor type, T##BC153300|PTPRT|11122|protein tyrosine phosphatase, receptor type, T##AF043644|PTPRT|11122|protein tyrosine phosphatase, receptor type, T##NM_007050|PTPRT|11122|protein tyrosine phosphatase, receptor type, T##NM_133170|PTPRT|11122|protein tyrosine phosphatase, receptor type, T##NM_006275|SRSF6|6431|serine/arginine-rich splicing factor 6##AK291203|SRSF6|6431|serine/arginine-rich splicing factor 6##AK300411|SRSF6|6431|serine/arginine-rich splicing factor 6##AB208976|SRSF6|6431|serine/arginine-rich splicing factor 6##BC006832|SRSF6|6431|serine/arginine-rich splicing factor 6##U30828|SRSF6|6431|serine/arginine-rich splicing factor 6##U30883|SRSF6|6431|serine/arginine-rich splicing factor 6##AB451251|SRSF6|6431|serine/arginine-rich splicing factor 6##AB451375|SRSF6|6431|serine/arginine-rich splicing factor 6	0.0	
chr10	104005062	104005229	reg1000139.p1	11.251	+	BC011642 NM_005029	-3916	-	BC034344 NM_152310	-19003	+	NM_004741 TSC_hg19_v1_chr10_+_103912145 Z34289 AK225101 AK314363 AK056755 BC001883 BC006769 DQ891862 DQ895051 AY820769 D21262	-93094	+	NM_001199378 NM_001199379 NM_004193 BC057804 BC068543 TSC_hg19_v1_chr10_+_104005288 BC094763 AK025330 BC032543	134	+	TSC_hg19_v1_chr10_+_104005308 AF068755 D87435 BC117681 BC117682	222	+	NM_001077493 TSC_hg19_v1_chr10_+_104154290 BC002844 NM_001077494 S76638	149145	+	BC011642|PITX3|5309|paired-like homeodomain 3##NM_005029|PITX3|5309|paired-like homeodomain 3##BC034344|ELOVL3|83401|ELOVL fatty acid elongase 3##NM_152310|ELOVL3|83401|ELOVL fatty acid elongase 3##NM_004741|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##Z34289|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##AK225101|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##AK314363|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##AK056755|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##BC001883|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##BC006769|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##DQ891862|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##DQ895051|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##AY820769|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##D21262|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##NM_001199378|GBF1|8729|golgi brefeldin A resistant guanine nucleotide exchange factor 1##NM_001199379|GBF1|8729|golgi brefeldin A resistant guanine nucleotide exchange factor 1##NM_004193|GBF1|8729|golgi brefeldin A resistant guanine nucleotide exchange factor 1##BC094763|GBF1|8729|golgi brefeldin A resistant guanine nucleotide exchange factor 1##AK025330|GBF1|8729|golgi brefeldin A resistant guanine nucleotide exchange factor 1##BC032543|GBF1|8729|golgi brefeldin A resistant guanine nucleotide exchange factor 1##AF068755|GBF1|8729|golgi brefeldin A resistant guanine nucleotide exchange factor 1##D87435|GBF1|8729|golgi brefeldin A resistant guanine nucleotide exchange factor 1##BC117681|GBF1|8729|golgi brefeldin A resistant guanine nucleotide exchange factor 1##BC117682|GBF1|8729|golgi brefeldin A resistant guanine nucleotide exchange factor 1##NM_001077493|NFKB2|4791|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)##BC002844|NFKB2|4791|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)##NM_001077494|NFKB2|4791|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)##S76638|NFKB2|4791|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)	1.845946	denovo_WM_21:45:0.218	denovo_WM_21:-84:0.880	denovo_WM_21:87:0.748
chr19	8454926	8455097	reg1000054.p1	11.230	+	NM_001039667 NM_139314 TSC_hg19_v1_chr19_+_8429039 AB056477 AF202636 AK222489 AK303269 AK222524 AY358275 AF153606 BC023647 AF169312 CU692818	-25904	+	BC035849 TSC_hg19_v1_chr19_-_8408147 AB284126 AK097023 AK128815 BC066124 BC066775 NM_198471	-46876	-	TSC_hg19_v1_chr19_+_8386383 AB055779 AK293636 AK301638 AK311925 BC070217 NM_001031 BC070218 BC000354 BC018810 L05091 U58682 BC021239 DQ891357 DQ894538 CR457055	-68617	+	TSC_hg19_v1_chr19_+_8455237 NM_004218 AK310573	208	+	TSC_hg19_v1_chr19_+_8455246 AK312994	240	+	TSC_hg19_v1_chr19_+_8455285 AK297498 AK225642 AK225036 D38516 X79780 BC110081 AB590872 AF498947 BT019535 BT019536 CR536494 CR541691 GQ129215 GQ129216	271	+	NM_001039667|ANGPTL4|51129|angiopoietin-like 4##NM_139314|ANGPTL4|51129|angiopoietin-like 4##AB056477|ANGPTL4|51129|angiopoietin-like 4##AF202636|ANGPTL4|51129|angiopoietin-like 4##AK222489|ANGPTL4|51129|angiopoietin-like 4##AK303269|ANGPTL4|51129|angiopoietin-like 4##AK222524|ANGPTL4|51129|angiopoietin-like 4##AY358275|ANGPTL4|51129|angiopoietin-like 4##AF153606|ANGPTL4|51129|angiopoietin-like 4##BC023647|ANGPTL4|51129|angiopoietin-like 4##AF169312|ANGPTL4|51129|angiopoietin-like 4##BC035849|KANK3|256949|KN motif and ankyrin repeat domains 3##AB284126|KANK3|256949|KN motif and ankyrin repeat domains 3##AK128815|KANK3|256949|KN motif and ankyrin repeat domains 3##BC066124|KANK3|256949|KN motif and ankyrin repeat domains 3##BC066775|KANK3|256949|KN motif and ankyrin repeat domains 3##NM_198471|KANK3|256949|KN motif and ankyrin repeat domains 3##AK293636|RPS28|6234|ribosomal protein S28##AK301638|RPS28|6234|ribosomal protein S28##AK311925|RPS28|6234|ribosomal protein S28##BC070217|RPS28|6234|ribosomal protein S28##NM_001031|RPS28|6234|ribosomal protein S28##BC070218|RPS28|6234|ribosomal protein S28##BC000354|RPS28|6234|ribosomal protein S28##BC018810|RPS28|6234|ribosomal protein S28##L05091|RPS28|6234|ribosomal protein S28##U58682|RPS28|6234|ribosomal protein S28##BC021239|RPS28|6234|ribosomal protein S28##DQ891357|RPS28|6234|ribosomal protein S28##DQ894538|RPS28|6234|ribosomal protein S28##CR457055|RPS28|6234|ribosomal protein S28##NM_004218|RAB11B|9230|RAB11B, member RAS oncogene family##AK312994|RAB11B|9230|RAB11B, member RAS oncogene family##AK297498|RAB11B|9230|RAB11B, member RAS oncogene family##AK225642|RAB11B|9230|RAB11B, member RAS oncogene family##AK225036|RAB11B|9230|RAB11B, member RAS oncogene family##D38516|RAB11B|9230|RAB11B, member RAS oncogene family##X79780|RAB11B|9230|RAB11B, member RAS oncogene family##BC110081|RAB11B|9230|RAB11B, member RAS oncogene family##AF498947|RAB11B|9230|RAB11B, member RAS oncogene family##BT019535|RAB11B|9230|RAB11B, member RAS oncogene family##BT019536|RAB11B|9230|RAB11B, member RAS oncogene family##CR536494|RAB11B|9230|RAB11B, member RAS oncogene family##CR541691|RAB11B|9230|RAB11B, member RAS oncogene family##GQ129215|RAB11B|9230|RAB11B, member RAS oncogene family##GQ129216|RAB11B|9230|RAB11B, member RAS oncogene family	0.132409	
chr19	36119753	36119917	reg1000210.p1	11.223	+	TSC_hg19_v1_chr19_+_36103655 BC064390 NM_015302 BC171905 BC157882 AK307703 AB020648 BC013947	-16164	+	AK058032 AK223259 NM_000704	-65276	-	TSC_hg19_v1_chr19_-_36036923 CR627053	-82927	-	TSC_hg19_v1_chr19_+_36119937 BC031682	107	+	TSC_hg19_v1_chr19_+_36119959 BC002868 BC004204 NM_024321 AK301669 AB384666 CU678262	171	+	NM_014209 AK097439 BC040908	12835	+	BC064390|HAUS5|23354|HAUS augmin-like complex, subunit 5##NM_015302|HAUS5|23354|HAUS augmin-like complex, subunit 5##BC171905|HAUS5|23354|HAUS augmin-like complex, subunit 5##BC157882|HAUS5|23354|HAUS augmin-like complex, subunit 5##AK307703|HAUS5|23354|HAUS augmin-like complex, subunit 5##AB020648|HAUS5|23354|HAUS augmin-like complex, subunit 5##BC013947|HAUS5|23354|HAUS augmin-like complex, subunit 5##AK058032|ATP4A|495|ATPase, H+/K+ exchanging, alpha polypeptide##AK223259|ATP4A|495|ATPase, H+/K+ exchanging, alpha polypeptide##NM_000704|ATP4A|495|ATPase, H+/K+ exchanging, alpha polypeptide##CR627053|LOC100506469|100506469|uncharacterized LOC100506469##BC031682|RBM42|79171|RNA binding motif protein 42##BC002868|RBM42|79171|RNA binding motif protein 42##BC004204|RBM42|79171|RNA binding motif protein 42##NM_024321|RBM42|79171|RNA binding motif protein 42##AK301669|RBM42|79171|RNA binding motif protein 42##NM_014209|ETV2|2116|ets variant 2##AK097439|ETV2|2116|ets variant 2##BC040908|ETV2|2116|ets variant 2	2.011154	denovo_WM_21:19:0.988	denovo_WM_21:57:0.870
chr9	139743695	139743839	reg1000206.p1	11.223	+	TSC_hg19_v1_chr9_+_139743450 AF131857 AF285119	-273	+	TSC_hg19_v1_chr9_+_139743239 NM_001135861 NM_014172	-520	+	NM_001080482	-4901	+	TSC_hg19_v1_chr9_+_139743861 AF161490 AL136644 BC024648 AF164795 AB528207 AM393672 AF393504 CR533481	100	+	TSC_hg19_v1_chr9_+_139746797 AY358419 NM_206920 BC144258 BC144259	3042	+	BT009863 CR541914 DQ891577 DQ894770 AB590058 TSC_hg19_v1_chr9_-_139760757 AJ005259 AB002282 AB002283 BC015500 NM_003792 NM_153200	16971	-	AF131857|PHPT1|29085|phosphohistidine phosphatase 1##AF285119|PHPT1|29085|phosphohistidine phosphatase 1##NM_001135861|PHPT1|29085|phosphohistidine phosphatase 1##NM_014172|PHPT1|29085|phosphohistidine phosphatase 1##NM_001080482|C9orf172|389813|chromosome 9 open reading frame 172##AF161490|PHPT1|29085|phosphohistidine phosphatase 1##AL136644|PHPT1|29085|phosphohistidine phosphatase 1##BC024648|PHPT1|29085|phosphohistidine phosphatase 1##AF164795|PHPT1|29085|phosphohistidine phosphatase 1##AM393672|PHPT1|29085|phosphohistidine phosphatase 1##AF393504|PHPT1|29085|phosphohistidine phosphatase 1##CR533481|PHPT1|29085|phosphohistidine phosphatase 1##AY358419|MAMDC4|158056|MAM domain containing 4##NM_206920|MAMDC4|158056|MAM domain containing 4##BC144258|MAMDC4|158056|MAM domain containing 4##BC144259|MAMDC4|158056|MAM domain containing 4##BT009863|EDF1|8721|endothelial differentiation-related factor 1##CR541914|EDF1|8721|endothelial differentiation-related factor 1##DQ891577|EDF1|8721|endothelial differentiation-related factor 1##DQ894770|EDF1|8721|endothelial differentiation-related factor 1##AB002282|EDF1|8721|endothelial differentiation-related factor 1##AB002283|EDF1|8721|endothelial differentiation-related factor 1##BC015500|EDF1|8721|endothelial differentiation-related factor 1##NM_003792|EDF1|8721|endothelial differentiation-related factor 1##NM_153200|EDF1|8721|endothelial differentiation-related factor 1	0.694529	denovo_WM_21:-44:0.695
chr8	11659977	11660133	reg1000234.p2	11.206	+	TSC_hg19_v1_chr8_+_11627280 NM_001135746 NM_001135747 NM_001135748 NM_145043 AK097389 AK294224 AK225837 AK056206 BX537529 BC013952 BC013964	-32787	+	TSC_hg19_v1_chr8_+_11561713 NM_002052 BC033672	-98335	+	S76617 NM_001715 BC018703 BC004473 BC038555	-308462	+	TSC_hg19_v1_chr8_+_11660183 NM_004462	129	+	TSC_hg19_v1_chr8_+_11660249 AK296043 AK315993 AK311246 X69141 AK301617	183	+	BC003573 BC009251 TSC_hg19_v1_chr8_+_11660279 S76822	226	+	NM_001135746|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_001135747|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_001135748|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_145043|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK097389|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK294224|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK225837|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK056206|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BX537529|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BC013952|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BC013964|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_002052|GATA4|2626|GATA binding protein 4##BC033672|GATA4|2626|GATA binding protein 4##S76617|BLK|640|B lymphoid tyrosine kinase##NM_001715|BLK|640|B lymphoid tyrosine kinase##BC018703|BLK|640|B lymphoid tyrosine kinase##BC004473|BLK|640|B lymphoid tyrosine kinase##BC038555|BLK|640|B lymphoid tyrosine kinase##NM_004462|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##AK296043|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##AK315993|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##AK311246|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##X69141|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##AK301617|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##BC003573|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##BC009251|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##S76822|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1	0.947601	denovo_WM_21:67:0.934
chr19	19030302	19030474	reg1000160.p1	11.204	+	TSC_hg19_v1_chr19_-_19030197 NM_007263 NM_199442 NM_199444	-188	-	AF092438 TSC_hg19_v1_chr19_-_19030196	-192	-	AK222584 AK315281 TSC_hg19_v1_chr19_-_19030195	-193	-	TSC_hg19_v1_chr19_+_19030483 NM_019070	92	+	TSC_hg19_v1_chr19_+_19030502 BC002674	109	+	AK291916 TSC_hg19_v1_chr19_+_19030523 AK001294 BC000979 AK223294 BX647408 CU678106	154	+	NM_007263|COPE|11316|coatomer protein complex, subunit epsilon##NM_199442|COPE|11316|coatomer protein complex, subunit epsilon##NM_199444|COPE|11316|coatomer protein complex, subunit epsilon##AF092438|COPE|11316|coatomer protein complex, subunit epsilon##AK222584|COPE|11316|coatomer protein complex, subunit epsilon##AK315281|COPE|11316|coatomer protein complex, subunit epsilon##NM_019070|DDX49|54555|DEAD (Asp-Glu-Ala-Asp) box polypeptide 49##BC002674|DDX49|54555|DEAD (Asp-Glu-Ala-Asp) box polypeptide 49##AK291916|DDX49|54555|DEAD (Asp-Glu-Ala-Asp) box polypeptide 49##AK001294|DDX49|54555|DEAD (Asp-Glu-Ala-Asp) box polypeptide 49##BC000979|DDX49|54555|DEAD (Asp-Glu-Ala-Asp) box polypeptide 49##AK223294|DDX49|54555|DEAD (Asp-Glu-Ala-Asp) box polypeptide 49##BX647408|DDX49|54555|DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	1.104215	denovo_WM_21:-25:0.738	denovo_WM_21:67:0.366
chr19	50180319	50180451	reg1000134.p2	11.200	+	AB590882 TSC_hg19_v1_chr19_+_50169270 BC007724	-11198	+	TSC_hg19_v1_chr19_-_50169088 BC000660 AK314421 BC009395 AK057577 AK292027 NM_001197122 NM_001197123 NM_001197124 NM_001197125 NM_001197126 NM_001197127 NM_001197128 NM_001571	-11306	-	TSC_hg19_v1_chr19_-_50168868 Z56281 HM357932 HM357933 HM357934 HM357935 HM357936 HM357937	-11472	-	AK304660 NM_001207042 NM_001536 NM_198318 TSC_hg19_v1_chr19_+_50180491	64	+	AK295973 TSC_hg19_v1_chr19_+_50180493 AB590883 BC019268 AY775289 D66904 Y10805 Y10806 Y10807 BC109282 BC109283	136	+	BC032764 NM_001101340	11545	+	BC007724|BCL2L12|83596|BCL2-like 12 (proline rich)##BC000660|IRF3|3661|interferon regulatory factor 3##AK314421|IRF3|3661|interferon regulatory factor 3##BC009395|IRF3|3661|interferon regulatory factor 3##AK057577|IRF3|3661|interferon regulatory factor 3##AK292027|IRF3|3661|interferon regulatory factor 3##NM_001197122|IRF3|3661|interferon regulatory factor 3##NM_001197123|IRF3|3661|interferon regulatory factor 3##NM_001197124|IRF3|3661|interferon regulatory factor 3##NM_001197125|IRF3|3661|interferon regulatory factor 3##NM_001197126|IRF3|3661|interferon regulatory factor 3##NM_001197127|IRF3|3661|interferon regulatory factor 3##NM_001197128|IRF3|3661|interferon regulatory factor 3##NM_001571|IRF3|3661|interferon regulatory factor 3##Z56281|IRF3|3661|interferon regulatory factor 3##HM357932|IRF3|3661|interferon regulatory factor 3##HM357933|IRF3|3661|interferon regulatory factor 3##HM357934|IRF3|3661|interferon regulatory factor 3##HM357935|IRF3|3661|interferon regulatory factor 3##HM357936|IRF3|3661|interferon regulatory factor 3##HM357937|IRF3|3661|interferon regulatory factor 3##AK304660|PRMT1|3276|protein arginine methyltransferase 1##NM_001207042|PRMT1|3276|protein arginine methyltransferase 1##NM_001536|PRMT1|3276|protein arginine methyltransferase 1##NM_198318|PRMT1|3276|protein arginine methyltransferase 1##AK295973|PRMT1|3276|protein arginine methyltransferase 1##BC019268|PRMT1|3276|protein arginine methyltransferase 1##AY775289|PRMT1|3276|protein arginine methyltransferase 1##D66904|PRMT1|3276|protein arginine methyltransferase 1##Y10805|PRMT1|3276|protein arginine methyltransferase 1##Y10806|PRMT1|3276|protein arginine methyltransferase 1##Y10807|PRMT1|3276|protein arginine methyltransferase 1##BC109282|PRMT1|3276|protein arginine methyltransferase 1##BC109283|PRMT1|3276|protein arginine methyltransferase 1##BC032764|C19orf76|199800|chromosome 19 open reading frame 76##NM_001101340|C19orf76|199800|chromosome 19 open reading frame 76	0.021237	
chr19	58892612	58892741	reg1000223.p2	11.196	+	TSC_hg19_v1_chr19_-_58892398 BC029960 NM_001129730 NM_138466	-260	-	BC118983 BC125273 AK124712 AK125350 TSC_hg19_v1_chr19_-_58874199 AK126727 AK172804 AK131209 NM_001207009 NM_198458	-18494	-	TSC_hg19_v1_chr19_-_58864830 AK289417 AF414429 AK055885 AB073611 NM_130786	-27834	-	TSC_hg19_v1_chr19_+_58898635 AK223106 AK311938 D28455 NM_001009 BC015405 BC018828 BC018151 BC035830 U14970	5976	+	NM_001195135	14780	+	TSC_hg19_v1_chr19_+_58920045 AK290068 BC033149 NM_173548	27371	+	BC029960|ZNF837|116412|zinc finger protein 837##NM_001129730|ZNF837|116412|zinc finger protein 837##NM_138466|ZNF837|116412|zinc finger protein 837##BC118983|ZNF497|162968|zinc finger protein 497##BC125273|ZNF497|162968|zinc finger protein 497##AK126727|ZNF497|162968|zinc finger protein 497##AK131209|ZNF497|162968|zinc finger protein 497##NM_001207009|ZNF497|162968|zinc finger protein 497##NM_198458|ZNF497|162968|zinc finger protein 497##AK289417|A1BG|1|alpha-1-B glycoprotein##AF414429|A1BG|1|alpha-1-B glycoprotein##AK055885|A1BG|1|alpha-1-B glycoprotein##AB073611|A1BG|1|alpha-1-B glycoprotein##NM_130786|A1BG|1|alpha-1-B glycoprotein##AK223106|RPS5|6193|ribosomal protein S5##AK311938|RPS5|6193|ribosomal protein S5##D28455|RPS5|6193|ribosomal protein S5##NM_001009|RPS5|6193|ribosomal protein S5##BC015405|RPS5|6193|ribosomal protein S5##BC018828|RPS5|6193|ribosomal protein S5##BC018151|RPS5|6193|ribosomal protein S5##BC035830|RPS5|6193|ribosomal protein S5##U14970|RPS5|6193|ribosomal protein S5##NM_001195135|LOC646862|646862|uncharacterized LOC646862##AK290068|ZNF584|201514|zinc finger protein 584##BC033149|ZNF584|201514|zinc finger protein 584##NM_173548|ZNF584|201514|zinc finger protein 584	0.0	
chr12	53473198	53473319	reg1000195.p1	11.173	+	TSC_hg19_v1_chr12_-_53473175 AK294092 NM_032840	-71	-	TSC_hg19_v1_chr12_-_53473167 AK074694	-90	-	BC136312 AK027706 TSC_hg19_v1_chr12_-_53473165	-109	-	TSC_hg19_v1_chr12_+_53491420 NM_002178 BC010162	18169	+	M62402 TSC_hg19_v1_chr12_+_53491450 AK313158 BC003507 BC011708 BC005007 DQ892995 DQ896243 AB528507 CR541791 M69054	18219	+	NM_003578 TSC_hg19_v1_chr12_+_53497278	24017	+	AK294092|SPRYD3|84926|SPRY domain containing 3##NM_032840|SPRYD3|84926|SPRY domain containing 3##AK074694|SPRYD3|84926|SPRY domain containing 3##BC136312|SPRYD3|84926|SPRY domain containing 3##AK027706|SPRYD3|84926|SPRY domain containing 3##NM_002178|IGFBP6|3489|insulin-like growth factor binding protein 6##BC010162|IGFBP6|3489|insulin-like growth factor binding protein 6##M62402|IGFBP6|3489|insulin-like growth factor binding protein 6##AK313158|IGFBP6|3489|insulin-like growth factor binding protein 6##BC003507|IGFBP6|3489|insulin-like growth factor binding protein 6##BC011708|IGFBP6|3489|insulin-like growth factor binding protein 6##BC005007|IGFBP6|3489|insulin-like growth factor binding protein 6##DQ892995|IGFBP6|3489|insulin-like growth factor binding protein 6##DQ896243|IGFBP6|3489|insulin-like growth factor binding protein 6##CR541791|IGFBP6|3489|insulin-like growth factor binding protein 6##M69054|IGFBP6|3489|insulin-like growth factor binding protein 6##NM_003578|SOAT2|8435|sterol O-acyltransferase 2	1.942964	denovo_WM_21:12:0.983	denovo_WM_21:-27:0.960
chr18	71959280	71959412	reg1000217.p1	11.145	+	CR456990 CU677229 DQ891283 DQ894343 M60174 TSC_hg19_v1_chr18_-_71959202 M22865 AK026310 BC015182 AB209617 NM_001190807 NM_001914 NM_148923	-167	-	NM_014177 TSC_hg19_v1_chr18_+_71815757 AK289923 AK313936 BC000892 AF161503	-143552	+	BC029579 NM_152676 TSC_hg19_v1_chr18_-_71815087 AK094215 NM_001142958	-144319	-	CR749350 NM_001174123	23763	+	TSC_hg19_v1_chr18_-_72124545 NM_001044369	165183	-	TSC_hg19_v1_chr18_+_72163567 NM_018235	204112	+	CR456990|CYB5A|1528|cytochrome b5 type A (microsomal)##DQ891283|CYB5A|1528|cytochrome b5 type A (microsomal)##DQ894343|CYB5A|1528|cytochrome b5 type A (microsomal)##M60174|CYB5A|1528|cytochrome b5 type A (microsomal)##M22865|CYB5A|1528|cytochrome b5 type A (microsomal)##AK026310|CYB5A|1528|cytochrome b5 type A (microsomal)##BC015182|CYB5A|1528|cytochrome b5 type A (microsomal)##AB209617|CYB5A|1528|cytochrome b5 type A (microsomal)##NM_001190807|CYB5A|1528|cytochrome b5 type A (microsomal)##NM_001914|CYB5A|1528|cytochrome b5 type A (microsomal)##NM_148923|CYB5A|1528|cytochrome b5 type A (microsomal)##NM_014177|TIMM21|29090|translocase of inner mitochondrial membrane 21 homolog (yeast)##AK289923|TIMM21|29090|translocase of inner mitochondrial membrane 21 homolog (yeast)##AK313936|TIMM21|29090|translocase of inner mitochondrial membrane 21 homolog (yeast)##BC000892|TIMM21|29090|translocase of inner mitochondrial membrane 21 homolog (yeast)##AF161503|TIMM21|29090|translocase of inner mitochondrial membrane 21 homolog (yeast)##BC029579|FBXO15|201456|F-box protein 15##NM_152676|FBXO15|201456|F-box protein 15##AK094215|FBXO15|201456|F-box protein 15##NM_001142958|FBXO15|201456|F-box protein 15##CR749350|C18orf63|644041|chromosome 18 open reading frame 63##NM_001174123|C18orf63|644041|chromosome 18 open reading frame 63##NM_001044369|FAM69C|125704|family with sequence similarity 69, member C##NM_018235|CNDP2|55748|CNDP dipeptidase 2 (metallopeptidase M20 family)	0.105757	
chr15	64673712	64673847	reg1000228.p1	11.134	+	AF529370 AY598324 AB463081 CU675545 BC005832 D14657 BC007101 TSC_hg19_v1_chr15_-_64673641 AK290748 BC016782 NM_001029989 NM_014736	-144	-	TSC_hg19_v1_chr15_-_64648373 AK225960 NM_022048	-25379	-	BC130613 BC136504 AL832551 TSC_hg19_v1_chr15_-_64648283	-25511	-	NM_016213 TSC_hg19_v1_chr15_+_64680041 BC012448 AK314319 AB464298 EU446746	6257	+	TSC_hg19_v1_chr15_+_64752786 BC142647	79080	+	NM_015042	117839	+	AF529370|KIAA0101|9768|KIAA0101##AY598324|KIAA0101|9768|KIAA0101##BC005832|KIAA0101|9768|KIAA0101##D14657|KIAA0101|9768|KIAA0101##BC007101|KIAA0101|9768|KIAA0101##AK290748|KIAA0101|9768|KIAA0101##BC016782|KIAA0101|9768|KIAA0101##NM_001029989|KIAA0101|9768|KIAA0101##NM_014736|KIAA0101|9768|KIAA0101##AK225960|CSNK1G1|53944|casein kinase 1, gamma 1##NM_022048|CSNK1G1|53944|casein kinase 1, gamma 1##BC130613|CSNK1G1|53944|casein kinase 1, gamma 1##BC136504|CSNK1G1|53944|casein kinase 1, gamma 1##AL832551|CSNK1G1|53944|casein kinase 1, gamma 1##NM_016213|TRIP4|9325|thyroid hormone receptor interactor 4##BC012448|TRIP4|9325|thyroid hormone receptor interactor 4##AK314319|TRIP4|9325|thyroid hormone receptor interactor 4##EU446746|TRIP4|9325|thyroid hormone receptor interactor 4##BC142647|ZNF609|23060|zinc finger protein 609##NM_015042|ZNF609|23060|zinc finger protein 609	0.988498	denovo_WM_21:-59:0.956
chr14	105957345	105957520	reg1000199.p1	11.131	+	BX248038 NM_001134877	-913	+	BX161477 NM_001198983	-1241	+	TSC_hg19_v1_chr14_+_105953533 AK098290 U09770 BC002738 DQ892958 DQ896205 BT007181 U58630	-3869	+	TSC_hg19_v1_chr14_+_105957582 NM_001134875 NM_001134876 BX248283 BX248074 BC016028	204	+	TSC_hg19_v1_chr14_+_105992939 BC004221 NM_025268	35509	+	TSC_hg19_v1_chr14_-_106092257 AJ294733 L13487	134904	-	BX248038|C14orf80|283643|chromosome 14 open reading frame 80##NM_001134877|C14orf80|283643|chromosome 14 open reading frame 80##BX161477|C14orf80|283643|chromosome 14 open reading frame 80##NM_001198983|C14orf80|283643|chromosome 14 open reading frame 80##AK098290|CRIP1|1396|cysteine-rich protein 1 (intestinal)##U09770|CRIP1|1396|cysteine-rich protein 1 (intestinal)##BC002738|CRIP1|1396|cysteine-rich protein 1 (intestinal)##DQ892958|CRIP1|1396|cysteine-rich protein 1 (intestinal)##DQ896205|CRIP1|1396|cysteine-rich protein 1 (intestinal)##BT007181|CRIP1|1396|cysteine-rich protein 1 (intestinal)##U58630|CRIP1|1396|cysteine-rich protein 1 (intestinal)##NM_001134875|C14orf80|283643|chromosome 14 open reading frame 80##NM_001134876|C14orf80|283643|chromosome 14 open reading frame 80##BX248283|C14orf80|283643|chromosome 14 open reading frame 80##BX248074|C14orf80|283643|chromosome 14 open reading frame 80##BC016028|C14orf80|283643|chromosome 14 open reading frame 80##BC004221|TMEM121|80757|transmembrane protein 121##NM_025268|TMEM121|80757|transmembrane protein 121##AJ294733|IGHG4|3503|immunoglobulin heavy constant gamma 4 (G4m marker)	0.232456	denovo_WM_21:0:0.206
chr14	23790521	23790634	reg1000138.p2	11.130	+	NM_004643	-1181	+	NM_001199864 NM_004050 AK289519 TSC_hg19_v1_chr14_+_23776072 BC104789 BC113522 D87461 BC011637 NM_001199839	-14533	+	NM_020834 TSC_hg19_v1_chr14_-_23755308	-35252	-	TSC_hg19_v1_chr14_+_23790671 BX247976 BC010939	97	+	AB529096 DQ658848 BC020565 NM_020372	30873	-	TSC_hg19_v1_chr14_-_23822095 BX161416 NM_016609 BC030559	31498	-	NM_004643|PABPN1|8106|poly(A) binding protein, nuclear 1##NM_001199864|BCL2L2-PABPN1|100529063|BCL2L2-PABPN1 readthrough##NM_004050|BCL2L2|599|BCL2-like 2##AK289519|BCL2L2|599|BCL2-like 2##BC104789|BCL2L2|599|BCL2-like 2##BC113522|BCL2L2|599|BCL2-like 2##D87461|BCL2L2|599|BCL2-like 2##BC011637|BCL2L2-PABPN1|100529063|BCL2L2-PABPN1 readthrough##NM_001199839|BCL2L2|599|BCL2-like 2##NM_020834|HOMEZ|57594|homeobox and leucine zipper encoding##BX247976|PABPN1|8106|poly(A) binding protein, nuclear 1##BC010939|PABPN1|8106|poly(A) binding protein, nuclear 1##DQ658848|SLC22A17|51310|solute carrier family 22, member 17##BC020565|SLC22A17|51310|solute carrier family 22, member 17##NM_020372|SLC22A17|51310|solute carrier family 22, member 17##BX161416|SLC22A17|51310|solute carrier family 22, member 17##NM_016609|SLC22A17|51310|solute carrier family 22, member 17##BC030559|SLC22A17|51310|solute carrier family 22, member 17	0.0	
chr16	70323442	70323541	reg1000176.p1	11.120	+	TSC_hg19_v1_chr16_-_70323413 AK222824 AK225116 AK307782 D32050 NM_001605	-80	-	BC011451 TSC_hg19_v1_chr16_-_70323364 AK299098	-124	-	TSC_hg19_v1_chr16_-_70285844 BC052252 NM_058219 BC039194	-37658	-	TSC_hg19_v1_chr16_+_70333090 AK296868 NM_001014449 NM_001014451 NM_007242 AK316346 AK223115	9585	+	AK027378 AL136639 TSC_hg19_v1_chr16_+_70333096 BC003626 BC010008 AF136175 AF183422 EU831645 EU831729 AB527308 CU678542 AJ237946 CR457215 CR533509	9657	+	TSC_hg19_v1_chr16_+_70380805 AK001988 CR749227 BC025771 AK125701 AK310804 AK223262 AK310604 AL832970 BC005162 BC006544 NM_018332 BC137496 BC137497 AK299539 CU675025	57337	+	AK222824|AARS|16|alanyl-tRNA synthetase##AK225116|AARS|16|alanyl-tRNA synthetase##AK307782|AARS|16|alanyl-tRNA synthetase##D32050|AARS|16|alanyl-tRNA synthetase##NM_001605|AARS|16|alanyl-tRNA synthetase##BC011451|AARS|16|alanyl-tRNA synthetase##AK299098|AARS|16|alanyl-tRNA synthetase##BC052252|EXOSC6|118460|exosome component 6##NM_058219|EXOSC6|118460|exosome component 6##AK296868|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_001014449|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_001014451|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_007242|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK316346|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK223115|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK027378|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AL136639|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##BC003626|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##BC010008|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##EU831645|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##EU831729|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AJ237946|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##CR457215|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##CR533509|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK001988|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##CR749227|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC025771|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK125701|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK310804|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK223262|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK310604|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AL832970|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC005162|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC006544|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##NM_018332|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC137496|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC137497|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK299539|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A	0.994086	denovo_WM_21:-34:0.959
chr19	2841336	2841459	reg1000209.p1	11.051	+	TSC_hg19_v1_chr19_+_2819942 BC000113 CU690506	-21392	+	TSC_hg19_v1_chr19_+_2819873 NM_001102651 AK299752 BC047777 AK092136 AX747373	-21524	+	TSC_hg19_v1_chr19_+_2785534 BC002391 NM_003249 BC000135 BC013878 Z50115 U29366 EU176234 CU677940 CU680690	-55836	+	NM_001172775 NM_152791 AK093163 AX747966 AL832140 BX647423 BC022022 AK292954	61	+	AK021699 AK225297 NM_024967 BC009374	25945	+	EF534355 NM_173480 TSC_hg19_v1_chr19_+_2900954 BX537601 BC028974 AK314848	59538	+	BC000113|ZNF554|115196|zinc finger protein 554##NM_001102651|ZNF554|115196|zinc finger protein 554##AK299752|ZNF554|115196|zinc finger protein 554##BC047777|ZNF554|115196|zinc finger protein 554##AK092136|ZNF554|115196|zinc finger protein 554##BC002391|THOP1|7064|thimet oligopeptidase 1##NM_003249|THOP1|7064|thimet oligopeptidase 1##BC000135|THOP1|7064|thimet oligopeptidase 1##BC013878|THOP1|7064|thimet oligopeptidase 1##Z50115|THOP1|7064|thimet oligopeptidase 1##U29366|THOP1|7064|thimet oligopeptidase 1##EU176234|THOP1|7064|thimet oligopeptidase 1##NM_001172775|ZNF555|148254|zinc finger protein 555##NM_152791|ZNF555|148254|zinc finger protein 555##AK093163|ZNF555|148254|zinc finger protein 555##AL832140|ZNF555|148254|zinc finger protein 555##BX647423|ZNF555|148254|zinc finger protein 555##BC022022|ZNF555|148254|zinc finger protein 555##AK292954|ZNF555|148254|zinc finger protein 555##AK021699|ZNF556|80032|zinc finger protein 556##AK225297|ZNF556|80032|zinc finger protein 556##NM_024967|ZNF556|80032|zinc finger protein 556##BC009374|ZNF556|80032|zinc finger protein 556##EF534355|ZNF57|126295|zinc finger protein 57##NM_173480|ZNF57|126295|zinc finger protein 57##BX537601|ZNF57|126295|zinc finger protein 57##BC028974|ZNF57|126295|zinc finger protein 57##AK314848|ZNF57|126295|zinc finger protein 57	2.289721	denovo_WM_21:-13:0.497	denovo_WM_21:18:0.952	denovo_WM_21:-87:0.740
chr16	4852920	4853039	reg1000215.p2	11.014	+	AK296334 TSC_hg19_v1_chr16_-_4852886	-81	-	CR457355 CR533547 CU680440 AM393155 AB528292 TSC_hg19_v1_chr16_-_4852635 BC012901 AK098348 AL136675 AK026039 NM_024589	-345	-	BC128383 NM_001253793 NM_001253794	-7658	+	BC048291 AF217521 BC071698 BC073868 TSC_hg19_v1_chr16_-_4855051	1924	-	TSC_hg19_v1_chr16_-_4855167 BC063039	2188	-	TSC_hg19_v1_chr16_-_4896209 BC003693	43224	-	CR457355|ROGDI|79641|rogdi homolog (Drosophila)##CR533547|ROGDI|79641|rogdi homolog (Drosophila)##AM393155|ROGDI|79641|rogdi homolog (Drosophila)##BC012901|ROGDI|79641|rogdi homolog (Drosophila)##AK098348|ROGDI|79641|rogdi homolog (Drosophila)##AL136675|ROGDI|79641|rogdi homolog (Drosophila)##AK026039|ROGDI|79641|rogdi homolog (Drosophila)##NM_024589|ROGDI|79641|rogdi homolog (Drosophila)##NM_001253793|LOC440335|440335|uncharacterized LOC440335##NM_001253794|LOC440335|440335|uncharacterized LOC440335##BC048291|GLYR1|84656|glyoxylate reductase 1 homolog (Arabidopsis)##AF217521|GLYR1|84656|glyoxylate reductase 1 homolog (Arabidopsis)##BC073868|GLYR1|84656|glyoxylate reductase 1 homolog (Arabidopsis)##BC063039|GLYR1|84656|glyoxylate reductase 1 homolog (Arabidopsis)##BC003693|GLYR1|84656|glyoxylate reductase 1 homolog (Arabidopsis)	1.277978	denovo_WM_21:8:0.652	denovo_WM_21:47:0.626
chr1	11322674	11322822	reg1000148.p1	10.985	+	TSC_hg19_v1_chr1_-_11322609 NM_004958	-141	-	TSC_hg19_v1_chr1_-_11322598 AK304273 AK302863	-150	-	TSC_hg19_v1_chr1_-_11322588 AB209995	-160	-	TSC_hg19_v1_chr1_+_11333254 AK222808 NM_013319 AK074890 AF117064	10568	+	TSC_hg19_v1_chr1_+_11333566 BC004468 BT006832	10797	+	TSC_hg19_v1_chr1_+_11539211 AB593117 AK311332 AB037758 NM_020780	216487	+	NM_004958|MTOR|2475|mechanistic target of rapamycin (serine/threonine kinase)##AK304273|MTOR|2475|mechanistic target of rapamycin (serine/threonine kinase)##AK302863|MTOR|2475|mechanistic target of rapamycin (serine/threonine kinase)##AB209995|MTOR|2475|mechanistic target of rapamycin (serine/threonine kinase)##AK222808|UBIAD1|29914|UbiA prenyltransferase domain containing 1##NM_013319|UBIAD1|29914|UbiA prenyltransferase domain containing 1##AK074890|UBIAD1|29914|UbiA prenyltransferase domain containing 1##AF117064|UBIAD1|29914|UbiA prenyltransferase domain containing 1##BC004468|UBIAD1|29914|UbiA prenyltransferase domain containing 1##BT006832|UBIAD1|29914|UbiA prenyltransferase domain containing 1##AB593117|PTCHD2|57540|patched domain containing 2##AB037758|PTCHD2|57540|patched domain containing 2##NM_020780|PTCHD2|57540|patched domain containing 2	0.563526	denovo_WM_21:-64:0.204	denovo_WM_21:-105:0.360
chr18	14132447	14132599	reg1000241.p2	10.982	+	BC010705 AK096748 BC024227 BC037787 NM_145287	-66	-	AK315319 BC094710 NM_000529 AK289381	-216987	-	BC095531 NM_005913	-306981	+	TSC_hg19_v1_chr18_+_14179298 BC127726	46786	+	BC140940 BX649118 AK307658 NM_001137671	411021	-	AF269088 NM_001145029 BC028407	615762	+	BC010705|ZNF519|162655|zinc finger protein 519##AK096748|ZNF519|162655|zinc finger protein 519##BC024227|ZNF519|162655|zinc finger protein 519##BC037787|ZNF519|162655|zinc finger protein 519##NM_145287|ZNF519|162655|zinc finger protein 519##AK315319|MC2R|4158|melanocortin 2 receptor (adrenocorticotropic hormone)##BC094710|MC2R|4158|melanocortin 2 receptor (adrenocorticotropic hormone)##NM_000529|MC2R|4158|melanocortin 2 receptor (adrenocorticotropic hormone)##AK289381|MC2R|4158|melanocortin 2 receptor (adrenocorticotropic hormone)##BC095531|MC5R|4161|melanocortin 5 receptor##NM_005913|MC5R|4161|melanocortin 5 receptor##BC127726|ANKRD20A5P|440482|ankyrin repeat domain 20 family, member A5, pseudogene##BC140940|POTEC|388468|POTE ankyrin domain family, member C##BX649118|POTEC|388468|POTE ankyrin domain family, member C##AK307658|POTEC|388468|POTE ankyrin domain family, member C##NM_001137671|POTEC|388468|POTE ankyrin domain family, member C##AF269088|ANKRD30B|374860|ankyrin repeat domain 30B##NM_001145029|ANKRD30B|374860|ankyrin repeat domain 30B##BC028407|ANKRD30B|374860|ankyrin repeat domain 30B	0.858649	denovo_WM_21:-7:0.848
chr14	68286385	68286520	reg1000280.p1	10.960	+	AB425197 BC144594 TSC_hg19_v1_chr14_-_68283303 BX537886 AK304428 BX648036 BX648683 CR749276 CR749365 AK308233 NM_015346	-3153	-	AK315462 NM_152443	-117850	+	CR457180 CU680026 CU691474 CU693194 BC011727 BC000112 TSC_hg19_v1_chr14_-_68162477 AK289427 BC026274 DQ426886 AK057195 AK293355 BC051291 AF151840 AF167438 AF395068 AK307500 AK314465 BC037302 AK074749 NM_001252650 NM_016026	-123988	-	AK309787 NM_002877 NM_133509 NM_133510 U92074 U84138 TSC_hg19_v1_chr14_+_68286537 Y15571 AK310686 BC030219 BX161515 BX248766 BX248061	68	+	AB385016 BT019468 X99404 DQ891349 DQ894529 BC018340 AK294363 TSC_hg19_v1_chr14_-_69259782 AK303917	973268	-	NM_001244698 NM_004926	974178	-	AB425197|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BC144594|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX537886|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK304428|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648036|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648683|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749276|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749365|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK308233|ZFYVE26|23503|zinc finger, FYVE domain containing 26##NM_015346|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK315462|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##NM_152443|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##CR457180|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##BC011727|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##BC000112|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AK289427|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##BC026274|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##DQ426886|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AK057195|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AK293355|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##BC051291|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AF151840|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AF167438|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AF395068|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AK307500|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AK314465|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##BC037302|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AK074749|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##NM_001252650|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##NM_016026|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AK309787|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_002877|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133509|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133510|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U92074|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U84138|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##Y15571|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AK310686|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BC030219|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX161515|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248766|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248061|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BT019468|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##X99404|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ891349|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ894529|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##BC018340|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK294363|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK303917|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244698|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_004926|ZFP36L1|677|zinc finger protein 36, C3H type-like 1	0.978938	denovo_WM_21:0:0.979
chr1	24742143	24742307	reg1000259.p1	10.943	+	BC040212 NM_001199012	-639	-	TSC_hg19_v1_chr1_-_24740273 AK090659 AK299401 AX746563 BC035061 NM_001199013 NM_001199014 NM_178122	-2003	-	AY231160 AY231161 NM_021180	-92696	+	NM_020448 TSC_hg19_v1_chr1_+_24742291 AK312433 BX640883 BC012492 BC001265 BC063583 U90918	78	+	TSC_hg19_v1_chr1_+_24828833 NM_001251979 NM_001251984 JN228252 GQ411200 HQ317421 HQ317422	86595	+	TSC_hg19_v1_chr1_+_24829420 BC035854 NM_001251977 NM_001251981 NM_001251983 NM_013441 HQ287726	87226	+	BC040212|C1orf201|90529|chromosome 1 open reading frame 201##NM_001199012|C1orf201|90529|chromosome 1 open reading frame 201##AK299401|C1orf201|90529|chromosome 1 open reading frame 201##BC035061|C1orf201|90529|chromosome 1 open reading frame 201##NM_001199013|C1orf201|90529|chromosome 1 open reading frame 201##NM_001199014|C1orf201|90529|chromosome 1 open reading frame 201##NM_178122|C1orf201|90529|chromosome 1 open reading frame 201##AY231160|GRHL3|57822|grainyhead-like 3 (Drosophila)##AY231161|GRHL3|57822|grainyhead-like 3 (Drosophila)##NM_021180|GRHL3|57822|grainyhead-like 3 (Drosophila)##NM_020448|NIPAL3|57185|NIPA-like domain containing 3##AK312433|NIPAL3|57185|NIPA-like domain containing 3##BX640883|NIPAL3|57185|NIPA-like domain containing 3##BC012492|NIPAL3|57185|NIPA-like domain containing 3##BC001265|NIPAL3|57185|NIPA-like domain containing 3##BC063583|NIPAL3|57185|NIPA-like domain containing 3##U90918|NIPAL3|57185|NIPA-like domain containing 3##NM_001251979|RCAN3|11123|RCAN family member 3##NM_001251984|RCAN3|11123|RCAN family member 3##JN228252|RCAN3|11123|RCAN family member 3##GQ411200|RCAN3|11123|RCAN family member 3##HQ317421|RCAN3|11123|RCAN family member 3##HQ317422|RCAN3|11123|RCAN family member 3##BC035854|RCAN3|11123|RCAN family member 3##NM_001251977|RCAN3|11123|RCAN family member 3##NM_001251981|RCAN3|11123|RCAN family member 3##NM_001251983|RCAN3|11123|RCAN family member 3##NM_013441|RCAN3|11123|RCAN family member 3##HQ287726|RCAN3|11123|RCAN family member 3	0.033763	
chr15	43213053	43213183	reg1000192.p1	10.935	+	AF525400 TSC_hg19_v1_chr15_-_43212975 AK131372 BC041876 NM_173500 BC071556	-136	-	TSC_hg19_v1_chr15_-_43029327 AF525398 NM_138477	-183751	-	TSC_hg19_v1_chr15_-_43029313 BC052568 BC066640	-183898	-	AF525401 AY061886 AK292516 TSC_hg19_v1_chr15_-_43398234 AK056441 NM_174916 BC113505 BC113507 AK302489	185121	-	TSC_hg19_v1_chr15_-_43408716 D28374	195591	-	TSC_hg19_v1_chr15_+_43425795 BC009981 NM_024956	212795	+	AF525400|TTBK2|146057|tau tubulin kinase 2##AK131372|TTBK2|146057|tau tubulin kinase 2##BC041876|TTBK2|146057|tau tubulin kinase 2##NM_173500|TTBK2|146057|tau tubulin kinase 2##BC071556|TTBK2|146057|tau tubulin kinase 2##AF525398|CDAN1|146059|congenital dyserythropoietic anemia, type I##NM_138477|CDAN1|146059|congenital dyserythropoietic anemia, type I##BC052568|CDAN1|146059|congenital dyserythropoietic anemia, type I##BC066640|CDAN1|146059|congenital dyserythropoietic anemia, type I##AF525401|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##AY061886|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##AK292516|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##AK056441|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##NM_174916|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##BC113505|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##BC113507|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##AK302489|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##D28374|RPS3A|6189|ribosomal protein S3A##BC009981|TMEM62|80021|transmembrane protein 62##NM_024956|TMEM62|80021|transmembrane protein 62	0.148143	
chr1	153940187	153940323	reg1000225.p1	10.931	+	BC014303 NM_014437	-68	-	BC047288 BC069261 TSC_hg19_v1_chr1_-_153936009 BC007886 BC002563 AJ243649 AJ271671 AK293389 AK297983 AK300244 AK075257	-4257	-	CR457217 DQ893619 DQ895350 CU675849 CU678404 BC003152 AF132942 TSC_hg19_v1_chr1_-_153935228	-5046	-	AK297703 TSC_hg19_v1_chr1_+_153940377 AY049977 AK309767 AK304665 AB052778 NM_130898 BC038962	119	+	AF151056 AF131797 TSC_hg19_v1_chr1_-_153950108 BC001667 BC019277 BC000996	9807	-	BC004239 TSC_hg19_v1_chr1_-_153950119	9862	-	BC014303|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##NM_014437|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##BC047288|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##BC069261|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##BC007886|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##BC002563|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##AJ243649|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##AJ271671|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##AK293389|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##AK297983|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##AK300244|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##AK075257|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##CR457217|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##DQ893619|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##DQ895350|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##BC003152|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##AF132942|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##AK297703|CREB3L4|148327|cAMP responsive element binding protein 3-like 4##AY049977|CREB3L4|148327|cAMP responsive element binding protein 3-like 4##AK304665|CREB3L4|148327|cAMP responsive element binding protein 3-like 4##AB052778|CREB3L4|148327|cAMP responsive element binding protein 3-like 4##NM_130898|CREB3L4|148327|cAMP responsive element binding protein 3-like 4##BC038962|CREB3L4|148327|cAMP responsive element binding protein 3-like 4##AF151056|JTB|10899|jumping translocation breakpoint##AF131797|JTB|10899|jumping translocation breakpoint##BC001667|JTB|10899|jumping translocation breakpoint##BC019277|JTB|10899|jumping translocation breakpoint##BC000996|JTB|10899|jumping translocation breakpoint##BC004239|JTB|10899|jumping translocation breakpoint	0.03054	
chr5	43313807	43313940	reg1000167.p2	10.918	+	TSC_hg19_v1_chr5_-_43313581 NM_001098272 NM_002130	-277	-	BC000297 BC082234 M15802 X66435 TSC_hg19_v1_chr5_-_43313515 AK095492 AK315593	-342	-	BC036422 NM_153361	-121547	+	TSC_hg19_v1_chr5_-_43397231 AK307307	83353	-	AB590493 AF220210 CU686894 HM067700 BC062668 BC069532 AF266504 AF110384 AK312120 NM_148672	98579	-	BC013351 BC063832 AK094078 TSC_hg19_v1_chr5_-_43483947 AK025310 AK225220 NM_022483 AK315466	170091	-	NM_001098272|HMGCS1|3157|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)##NM_002130|HMGCS1|3157|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)##BC000297|HMGCS1|3157|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)##BC082234|HMGCS1|3157|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)##M15802|HMGCS1|3157|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)##X66435|HMGCS1|3157|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)##AK095492|HMGCS1|3157|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)##AK315593|HMGCS1|3157|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)##BC036422|NIM1|167359|serine/threonine-protein kinase NIM1##NM_153361|NIM1|167359|serine/threonine-protein kinase NIM1##AK307307|CCL28|56477|chemokine (C-C motif) ligand 28##AF220210|CCL28|56477|chemokine (C-C motif) ligand 28##HM067700|CCL28|56477|chemokine (C-C motif) ligand 28##BC062668|CCL28|56477|chemokine (C-C motif) ligand 28##BC069532|CCL28|56477|chemokine (C-C motif) ligand 28##AF266504|CCL28|56477|chemokine (C-C motif) ligand 28##AF110384|CCL28|56477|chemokine (C-C motif) ligand 28##AK312120|CCL28|56477|chemokine (C-C motif) ligand 28##NM_148672|CCL28|56477|chemokine (C-C motif) ligand 28##BC013351|C5orf28|64417|chromosome 5 open reading frame 28##BC063832|C5orf28|64417|chromosome 5 open reading frame 28##AK025310|C5orf28|64417|chromosome 5 open reading frame 28##AK225220|C5orf28|64417|chromosome 5 open reading frame 28##NM_022483|C5orf28|64417|chromosome 5 open reading frame 28##AK315466|C5orf28|64417|chromosome 5 open reading frame 28	0.721003	denovo_WM_21:-30:0.260	denovo_WM_21:30:0.403
chr1	143913655	143913783	reg1000014.p3	10.906	+	AK307197 TSC_hg19_v1_chr1_-_143913122 AB096683 NM_207418	-589	-	HQ258079 BC130376 BC130378 NM_001123068	-145855	-	BC071624 BC132962 AK097058 AK310056 TSC_hg19_v1_chr1_-_143744413 AK310186 AK309393	-169314	-	BC130376 BC130378 AB084917 NM_001135789 NM_001143883 NM_178230	450505	-	BC061517 BC073170 BC009950 BC094809 TSC_hg19_v1_chr1_-_144520932	607212	-	TSC_hg19_v1_chr1_-_144520998 BC063535 BC021732	607287	-	AK307197|FAM72D|728833|family with sequence similarity 72, member D##AB096683|FAM72D|728833|family with sequence similarity 72, member D##NM_207418|FAM72D|728833|family with sequence similarity 72, member D##HQ258079|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC130376|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC130378|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##NM_001123068|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC071624|FLJ39739|388685|uncharacterized FLJ39739##BC132962|LOC100286793|100286793|uncharacterized LOC100286793##AK097058|FLJ39739|388685|uncharacterized FLJ39739##AK310056|FLJ39739|388685|uncharacterized FLJ39739##AK310186|FLJ39739|388685|uncharacterized FLJ39739##AK309393|FLJ39739|388685|uncharacterized FLJ39739##BC130376|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC130378|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##AB084917|PPIAL4A|164022|peptidylprolyl isomerase A (cyclophilin A)-like 4A##NM_001135789|PPIAL4C|653598|peptidylprolyl isomerase A (cyclophilin A)-like 4C##NM_001143883|PPIAL4B|653505|peptidylprolyl isomerase A (cyclophilin A)-like 4B##NM_178230|PPIAL4A|164022|peptidylprolyl isomerase A (cyclophilin A)-like 4A##BC061517|LOC728855|728855|uncharacterized LOC728855##BC073170|LOC728855|728855|uncharacterized LOC728855##BC009950|LOC728855|728855|uncharacterized LOC728855##BC094809|LOC728855|728855|uncharacterized LOC728855##BC063535|LOC728855|728855|uncharacterized LOC728855##BC021732|LOC728855|728855|uncharacterized LOC728855	0.965236	denovo_WM_21:-9:0.965
chr5	145583018	145583128	reg1000166.p1	10.896	+	TSC_hg19_v1_chr5_-_145562236 NM_020117	-20809	-	TSC_hg19_v1_chr5_-_145562214 AB037773 BC152422	-20852	-	TSC_hg19_v1_chr5_-_145562187 BC131798 BC110084 D84223 BC151214 AK304134 BC068041 AK293750 AK025441 AK295874 AF151026 BC105581 AK315178 BC150213	-20934	-	AK128738 TSC_hg19_v1_chr5_+_145583122	44	+	TSC_hg19_v1_chr5_+_145583167 BC009537 BX647384 NM_018989 BC029648	93	+	BC104923 BC112207 NM_002700 AB464668 EU446649 HQ258176	135557	+	NM_020117|LARS|51520|leucyl-tRNA synthetase##AB037773|LARS|51520|leucyl-tRNA synthetase##BC152422|LARS|51520|leucyl-tRNA synthetase##BC131798|LARS|51520|leucyl-tRNA synthetase##BC110084|LARS|51520|leucyl-tRNA synthetase##D84223|LARS|51520|leucyl-tRNA synthetase##BC151214|LARS|51520|leucyl-tRNA synthetase##AK304134|LARS|51520|leucyl-tRNA synthetase##BC068041|LARS|51520|leucyl-tRNA synthetase##AK293750|LARS|51520|leucyl-tRNA synthetase##AK025441|LARS|51520|leucyl-tRNA synthetase##AK295874|LARS|51520|leucyl-tRNA synthetase##AF151026|LARS|51520|leucyl-tRNA synthetase##BC105581|LARS|51520|leucyl-tRNA synthetase##AK315178|LARS|51520|leucyl-tRNA synthetase##BC150213|LARS|51520|leucyl-tRNA synthetase##AK128738|RBM27|54439|RNA binding motif protein 27##BC009537|RBM27|54439|RNA binding motif protein 27##BX647384|RBM27|54439|RNA binding motif protein 27##NM_018989|RBM27|54439|RNA binding motif protein 27##BC029648|RBM27|54439|RNA binding motif protein 27##BC104923|POU4F3|5459|POU class 4 homeobox 3##BC112207|POU4F3|5459|POU class 4 homeobox 3##NM_002700|POU4F3|5459|POU class 4 homeobox 3##EU446649|POU4F3|5459|POU class 4 homeobox 3##HQ258176|POU4F3|5459|POU class 4 homeobox 3	0.886139	denovo_WM_21:-16:0.797
chr16	22385966	22386094	reg1000226.p1	10.879	+	CU676000 DQ892203 DQ892204 DQ895399 D12981 AB528417 AK292273 M63256 TSC_hg19_v1_chr16_-_22385939 BC017503 NM_001802	-235	-	TSC_hg19_v1_chr16_+_22308740 AK026645 AK300735 AK023160 NM_018119 AK023231 AK296813 AK222789 BC000285 AK001371 AK222671 AB040885	-77282	+	TSC_hg19_v1_chr16_+_22217630 NM_013302 AK308757 BC032665	-168357	+	NM_001135865 BC036263 AK296338 CU690320	138952	+	TSC_hg19_v1_chr16_+_22825482 AY359095 AK313463	439472	+	AB209794 AF105374 AF105375 NM_006043 BC093734 BC093736	439821	+	DQ892203|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##DQ892204|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##DQ895399|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##D12981|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##AK292273|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##M63256|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##BC017503|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##NM_001802|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##AK026645|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK300735|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK023160|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##NM_018119|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK023231|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK296813|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK222789|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##BC000285|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK001371|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK222671|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AB040885|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##NM_013302|EEF2K|29904|eukaryotic elongation factor-2 kinase##AK308757|EEF2K|29904|eukaryotic elongation factor-2 kinase##BC032665|EEF2K|29904|eukaryotic elongation factor-2 kinase##NM_001135865|LOC100132247|100132247|nuclear pore complex interacting protein related gene##BC036263|NPIPL3|23117|nuclear pore complex interacting protein-like 3##AK296338|LOC100132247|100132247|nuclear pore complex interacting protein related gene##AY359095|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AK313463|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AB209794|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AF105374|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AF105375|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##NM_006043|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##BC093734|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##BC093736|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2	0.440233	denovo_WM_21:-36:0.352
chr14	76127224	76127358	reg1000240.p1	10.865	+	AF134159 TSC_hg19_v1_chr14_-_76127220 AK311764 AL136658 AF136971 AF161406 BC002444	-95	-	AK297002 NM_001195283	-55487	+	NM_017791 AY260572 AY260577 BC019087 AK000378	-82326	+	TSC_hg19_v1_chr14_-_76127535 BX248022 NM_007176	264	-	NM_015072 TSC_hg19_v1_chr14_+_76127588 BC110652	278	+	TSC_hg19_v1_chr14_+_76127610 AK309748 AY237126 BC002766	326	+	AF134159|C14orf1|11161|chromosome 14 open reading frame 1##AK311764|C14orf1|11161|chromosome 14 open reading frame 1##AL136658|C14orf1|11161|chromosome 14 open reading frame 1##AF136971|C14orf1|11161|chromosome 14 open reading frame 1##AF161406|C14orf1|11161|chromosome 14 open reading frame 1##BC002444|C14orf1|11161|chromosome 14 open reading frame 1##AK297002|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##NM_001195283|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##NM_017791|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AY260572|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AY260577|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##BC019087|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AK000378|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##BX248022|C14orf1|11161|chromosome 14 open reading frame 1##NM_007176|C14orf1|11161|chromosome 14 open reading frame 1##NM_015072|TTLL5|23093|tubulin tyrosine ligase-like family, member 5##BC110652|TTLL5|23093|tubulin tyrosine ligase-like family, member 5##AK309748|TTLL5|23093|tubulin tyrosine ligase-like family, member 5##AY237126|TTLL5|23093|tubulin tyrosine ligase-like family, member 5	1.117627	denovo_WM_21:-11:0.994
chr19	10491277	10491445	reg1000227.p1	10.855	+	TSC_hg19_v1_chr19_-_10491245 AK308360 NM_003331 AK303627 AK308379	-82	-	TSC_hg19_v1_chr19_-_10491192 X54637 AK222672 BC014243	-170	-	AF340060 AF340061 AB463787 BC040123 S50015 AK309643 BC058903 X69819 TSC_hg19_v1_chr19_-_10450307 AK301071 AX746321 X69711 BC034409 BC046121 AK312826 AK226023 NM_002162	-41052	-	AB463478 AM393285 AM393349 BT006796 CR542249 DQ892174 DQ895369 U43077 TSC_hg19_v1_chr19_-_10514182	22808	-	TSC_hg19_v1_chr19_-_10514219 BC000083 BC008793 U63131	22852	-	TSC_hg19_v1_chr19_-_10514250 NM_007065	22895	-	AK308360|TYK2|7297|tyrosine kinase 2##NM_003331|TYK2|7297|tyrosine kinase 2##AK303627|TYK2|7297|tyrosine kinase 2##AK308379|TYK2|7297|tyrosine kinase 2##X54637|TYK2|7297|tyrosine kinase 2##AK222672|TYK2|7297|tyrosine kinase 2##BC014243|TYK2|7297|tyrosine kinase 2##AF340060|ICAM3|3385|intercellular adhesion molecule 3##AF340061|ICAM3|3385|intercellular adhesion molecule 3##BC040123|ICAM3|3385|intercellular adhesion molecule 3##S50015|ICAM3|3385|intercellular adhesion molecule 3##AK309643|ICAM3|3385|intercellular adhesion molecule 3##BC058903|ICAM3|3385|intercellular adhesion molecule 3##X69819|ICAM3|3385|intercellular adhesion molecule 3##AX746321|ICAM3|3385|intercellular adhesion molecule 3##X69711|ICAM3|3385|intercellular adhesion molecule 3##BC034409|ICAM3|3385|intercellular adhesion molecule 3##BC046121|ICAM3|3385|intercellular adhesion molecule 3##AK312826|ICAM3|3385|intercellular adhesion molecule 3##AK226023|ICAM3|3385|intercellular adhesion molecule 3##NM_002162|ICAM3|3385|intercellular adhesion molecule 3##AM393285|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##AM393349|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BT006796|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##CR542249|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##DQ892174|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##DQ895369|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##U43077|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BC000083|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BC008793|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##U63131|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##NM_007065|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)	3.248093	denovo_WM_21:12:0.963	denovo_WM_21:46:0.502	denovo_WM_21:-86:0.946	denovo_WM_21:86:0.801
chr19	14063061	14063192	reg1000133.p1	10.848	+	TSC_hg19_v1_chr19_-_14049167 AK290731 BC057786 NM_024825	-13899	-	AK296101 CU691234 TSC_hg19_v1_chr19_-_14049115	-14130	-	TSC_hg19_v1_chr19_+_14017058 BC064981	-46065	+	TSC_hg19_v1_chr19_+_14063308 AK093072 AX747902	172	+	BC080575 NM_138353 TSC_hg19_v1_chr19_+_14063318	192	+	AK027100 AK298489 NM_001146254 NM_001146255	1071	-	AK290731|PODNL1|79883|podocan-like 1##BC057786|PODNL1|79883|podocan-like 1##NM_024825|PODNL1|79883|podocan-like 1##AK296101|PODNL1|79883|podocan-like 1##BC064981|CC2D1A|54862|coiled-coil and C2 domain containing 1A##AK093072|DCAF15|90379|DDB1 and CUL4 associated factor 15##BC080575|DCAF15|90379|DDB1 and CUL4 associated factor 15##NM_138353|DCAF15|90379|DDB1 and CUL4 associated factor 15##AK027100|PODNL1|79883|podocan-like 1##AK298489|PODNL1|79883|podocan-like 1##NM_001146254|PODNL1|79883|podocan-like 1##NM_001146255|PODNL1|79883|podocan-like 1	0.0	
chr13	20437826	20437945	reg1000214.p1	10.837	+	TSC_hg19_v1_chr13_-_20437790 NM_001039649 NM_001039650 NM_001142684	-77	-	AK312724 BC007048 AJ133352 AJ133353 AJ133354 AJ133355 TSC_hg19_v1_chr13_-_20437745	-205	-	TSC_hg19_v1_chr13_-_20357160 NM_001042414	-80741	-	TSC_hg19_v1_chr13_+_20532834 BC036372 NM_003453 NM_197968 AL136621 NM_001190964 Y13472	94932	+	TSC_hg19_v1_chr13_+_20532881 AK226118 AK289741	94999	+	TSC_hg19_v1_chr13_+_20532911 AJ224901 BX647944 NM_001190965	95080	+	NM_001039649|ZMYM5|9205|zinc finger, MYM-type 5##NM_001039650|ZMYM5|9205|zinc finger, MYM-type 5##NM_001142684|ZMYM5|9205|zinc finger, MYM-type 5##AK312724|ZMYM5|9205|zinc finger, MYM-type 5##BC007048|ZMYM5|9205|zinc finger, MYM-type 5##AJ133352|ZMYM5|9205|zinc finger, MYM-type 5##AJ133353|ZMYM5|9205|zinc finger, MYM-type 5##AJ133354|ZMYM5|9205|zinc finger, MYM-type 5##AJ133355|ZMYM5|9205|zinc finger, MYM-type 5##NM_001042414|PSPC1|55269|paraspeckle component 1##BC036372|ZMYM2|7750|zinc finger, MYM-type 2##NM_003453|ZMYM2|7750|zinc finger, MYM-type 2##NM_197968|ZMYM2|7750|zinc finger, MYM-type 2##AL136621|ZMYM2|7750|zinc finger, MYM-type 2##NM_001190964|ZMYM2|7750|zinc finger, MYM-type 2##Y13472|ZMYM2|7750|zinc finger, MYM-type 2##AK226118|ZMYM2|7750|zinc finger, MYM-type 2##AK289741|ZMYM2|7750|zinc finger, MYM-type 2##AJ224901|ZMYM2|7750|zinc finger, MYM-type 2##BX647944|ZMYM2|7750|zinc finger, MYM-type 2##NM_001190965|ZMYM2|7750|zinc finger, MYM-type 2	0.983818	denovo_WM_21:5:0.858
chr9	135905897	135906064	reg1000216.p1	10.827	+	TSC_hg19_v1_chr9_+_135894809 BC070500	-11173	+	AY428733 NM_001135031 NM_004188	-51883	+	TSC_hg19_v1_chr9_-_135820004 AK303030 AK308412 AK297326 AF013168 BC108668 AK299654 BC070032 NM_000368 NM_001162426 NM_001162427	-85971	-	NM_001122823 NM_012087 TSC_hg19_v1_chr9_+_135906094 AK225761 AK311481 AK055092 AF133124 BC011355 BC017337	119	+	TSC_hg19_v1_chr9_+_135906386 AK000194 AK097295 AK293980 BC006409 AY007123 DQ892071 DQ895265 AJ420443 BC030157	408	+	NM_001807 S79774 M85201 BC042510 AK299965	31395	+	BC070500|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AY428733|GFI1B|8328|growth factor independent 1B transcription repressor##NM_001135031|GFI1B|8328|growth factor independent 1B transcription repressor##NM_004188|GFI1B|8328|growth factor independent 1B transcription repressor##AK303030|TSC1|7248|tuberous sclerosis 1##AK308412|TSC1|7248|tuberous sclerosis 1##AK297326|TSC1|7248|tuberous sclerosis 1##AF013168|TSC1|7248|tuberous sclerosis 1##BC108668|TSC1|7248|tuberous sclerosis 1##AK299654|TSC1|7248|tuberous sclerosis 1##BC070032|TSC1|7248|tuberous sclerosis 1##NM_000368|TSC1|7248|tuberous sclerosis 1##NM_001162426|TSC1|7248|tuberous sclerosis 1##NM_001162427|TSC1|7248|tuberous sclerosis 1##NM_001122823|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##NM_012087|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AK225761|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AK311481|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AK055092|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AF133124|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##BC011355|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##BC017337|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AK000194|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AK097295|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AK293980|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##BC006409|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AY007123|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##DQ892071|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##DQ895265|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AJ420443|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##BC030157|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##NM_001807|CEL|1056|carboxyl ester lipase (bile salt-stimulated lipase)##S79774|CEL|1056|carboxyl ester lipase (bile salt-stimulated lipase)##M85201|CEL|1056|carboxyl ester lipase (bile salt-stimulated lipase)##BC042510|CEL|1056|carboxyl ester lipase (bile salt-stimulated lipase)##AK299965|CEL|1056|carboxyl ester lipase (bile salt-stimulated lipase)	2.44005	denovo_WM_21:-9:0.468	denovo_WM_21:50:0.986	denovo_WM_21:89:0.986
chr19	21541619	21541798	reg1000276.p1	10.794	+	TSC_hg19_v1_chr19_-_21512183 AK128184 AK131527 NM_021269 AK095062 BX647526	-29515	-	BX647597 TSC_hg19_v1_chr19_+_21324836 AK308127 NM_133473 AK293072 AB075849 BC065374 BC040506	-216852	+	NM_182515 AL834415 TSC_hg19_v1_chr19_+_21264973 AK056006 BC022527 BC037782 BC050468 BC064985	-276705	+	BC034499 TSC_hg19_v1_chr19_+_21541801 AK027579 AK291002 AK291193	72	+	TSC_hg19_v1_chr19_+_21579931 NM_001076678 NM_145326 NM_175910 BX648842 AK092178 AK128494 AB209086 BC006408 BC022394 AX721142 EU446562	38253	+	CR627135 TSC_hg19_v1_chr19_-_21646716	104997	-	AK128184|ZNF708|7562|zinc finger protein 708##AK131527|ZNF708|7562|zinc finger protein 708##NM_021269|ZNF708|7562|zinc finger protein 708##BX647526|ZNF708|7562|zinc finger protein 708##BX647597|ZNF431|170959|zinc finger protein 431##AK308127|ZNF431|170959|zinc finger protein 431##NM_133473|ZNF431|170959|zinc finger protein 431##AK293072|ZNF431|170959|zinc finger protein 431##AB075849|ZNF431|170959|zinc finger protein 431##BC040506|ZNF431|170959|zinc finger protein 431##NM_182515|ZNF714|148206|zinc finger protein 714##AK056006|ZNF714|148206|zinc finger protein 714##BC022527|ZNF714|148206|zinc finger protein 714##BC037782|ZNF714|148206|zinc finger protein 714##BC050468|ZNF714|148206|zinc finger protein 714##BC064985|ZNF714|148206|zinc finger protein 714##BC034499|ZNF738|148203|zinc finger protein 738##AK027579|ZNF738|148203|zinc finger protein 738##AK291002|ZNF738|148203|zinc finger protein 738##AK291193|ZNF738|148203|zinc finger protein 738##NM_001076678|ZNF493|284443|zinc finger protein 493##NM_145326|ZNF493|284443|zinc finger protein 493##NM_175910|ZNF493|284443|zinc finger protein 493##BX648842|ZNF493|284443|zinc finger protein 493##AK092178|ZNF493|284443|zinc finger protein 493##AK128494|ZNF493|284443|zinc finger protein 493##AB209086|ZNF493|284443|zinc finger protein 493##BC006408|ZNF493|284443|zinc finger protein 493##BC022394|ZNF493|284443|zinc finger protein 493##EU446562|ZNF493|284443|zinc finger protein 493	0.917504	denovo_WM_21:0:0.890
chr19	12405675	12405799	reg1000232.p1	10.736	+	TSC_hg19_v1_chr19_-_12405615 BC136502 AK297528 BC032246 AB021642 BC001868 NM_001164276 NM_016264	-85	-	TSC_hg19_v1_chr19_+_12305871 AK093188 AX721123	-99831	+	AK023304 TSC_hg19_v1_chr19_+_12305836	-99904	+	AK313755 BC022523 AK092116 AX747362 NM_145276	38747	-	AK024418 AK295923 NM_030824	70723	-	TSC_hg19_v1_chr19_-_12512035 BC057831 NM_001080821	106317	-	BC136502|ZNF44|51710|zinc finger protein 44##AK297528|ZNF44|51710|zinc finger protein 44##BC032246|ZNF44|51710|zinc finger protein 44##AB021642|ZNF44|51710|zinc finger protein 44##BC001868|ZNF44|51710|zinc finger protein 44##NM_001164276|ZNF44|51710|zinc finger protein 44##NM_016264|ZNF44|51710|zinc finger protein 44##AK023304|LOC100289333|100289333|uncharacterized LOC100289333##AK313755|ZNF563|147837|zinc finger protein 563##BC022523|ZNF563|147837|zinc finger protein 563##AK092116|ZNF563|147837|zinc finger protein 563##NM_145276|ZNF563|147837|zinc finger protein 563##AK024418|ZNF442|79973|zinc finger protein 442##AK295923|ZNF442|79973|zinc finger protein 442##NM_030824|ZNF442|79973|zinc finger protein 442##NM_001080821|ZNF799|90576|zinc finger protein 799	0.098269	
chr19	46498513	46498672	reg1000122.p1	10.730	+	NM_001080402	-254	+	TSC_hg19_v1_chr19_-_46476556 U70477 AF083898 NM_002516	-21986	-	HQ258065 BC042883 NM_001029861 BC117484 BC117486	-80553	-	TSC_hg19_v1_chr19_+_46498724 GQ375050	135	+	NM_005091	27963	-	AY672114 NM_001002923	45681	-	NM_001080402|CCDC61|729440|coiled-coil domain containing 61##U70477|NOVA2|4858|neuro-oncological ventral antigen 2##AF083898|NOVA2|4858|neuro-oncological ventral antigen 2##NM_002516|NOVA2|4858|neuro-oncological ventral antigen 2##HQ258065|NANOS2|339345|nanos homolog 2 (Drosophila)##BC042883|NANOS2|339345|nanos homolog 2 (Drosophila)##NM_001029861|NANOS2|339345|nanos homolog 2 (Drosophila)##BC117484|NANOS2|339345|nanos homolog 2 (Drosophila)##BC117486|NANOS2|339345|nanos homolog 2 (Drosophila)##GQ375050|CCDC61|729440|coiled-coil domain containing 61##NM_005091|PGLYRP1|8993|peptidoglycan recognition protein 1##AY672114|IGFL4|444882|IGF-like family member 4##NM_001002923|IGFL4|444882|IGF-like family member 4	1.598034	denovo_WM_21:-13:0.620	denovo_WM_21:86:0.978
chr17	38210616	38210761	reg1000250.p2	10.727	+	TSC_hg19_v1_chr17_-_38210662 EU392536 EU392541 D50920 AK022508 AK303502 AK303745 AK291040 AK293309 AK299864 AK300992	-44	-	NM_000759 NM_001178147 NM_172219 NM_172220 AK290247 AK298116 M17706 AK313509 X03438 X03655 BC033245 AB591019 AB102881 CR541891	-39018	+	TSC_hg19_v1_chr17_+_38137216 AB385069 CU674020 CU676540 CU678776 CU680278 BT007217 CR456772	-73484	+	NM_001079518 NM_014815	200	-	AK290530 NM_001190919 AB209346	7771	+	TSC_hg19_v1_chr17_+_38219217 BC035137 NM_001190918 NM_003250 NM_199334 X55005 BC000261 BC002728 M24899 Y00479	8485	+	EU392536|MED24|9862|mediator complex subunit 24##EU392541|MED24|9862|mediator complex subunit 24##D50920|MED24|9862|mediator complex subunit 24##AK022508|MED24|9862|mediator complex subunit 24##AK303502|MED24|9862|mediator complex subunit 24##AK303745|MED24|9862|mediator complex subunit 24##AK291040|MED24|9862|mediator complex subunit 24##AK293309|MED24|9862|mediator complex subunit 24##AK299864|MED24|9862|mediator complex subunit 24##AK300992|MED24|9862|mediator complex subunit 24##NM_000759|CSF3|1440|colony stimulating factor 3 (granulocyte)##NM_001178147|CSF3|1440|colony stimulating factor 3 (granulocyte)##NM_172219|CSF3|1440|colony stimulating factor 3 (granulocyte)##NM_172220|CSF3|1440|colony stimulating factor 3 (granulocyte)##AK290247|CSF3|1440|colony stimulating factor 3 (granulocyte)##AK298116|CSF3|1440|colony stimulating factor 3 (granulocyte)##M17706|CSF3|1440|colony stimulating factor 3 (granulocyte)##AK313509|CSF3|1440|colony stimulating factor 3 (granulocyte)##X03438|CSF3|1440|colony stimulating factor 3 (granulocyte)##X03655|CSF3|1440|colony stimulating factor 3 (granulocyte)##BC033245|CSF3|1440|colony stimulating factor 3 (granulocyte)##AB102881|CSF3|1440|colony stimulating factor 3 (granulocyte)##CR541891|CSF3|1440|colony stimulating factor 3 (granulocyte)##BT007217|PSMD3|5709|proteasome (prosome, macropain) 26S subunit, non-ATPase, 3##CR456772|PSMD3|5709|proteasome (prosome, macropain) 26S subunit, non-ATPase, 3##NM_001079518|MED24|9862|mediator complex subunit 24##NM_014815|MED24|9862|mediator complex subunit 24##AK290530|THRA|7067|thyroid hormone receptor, alpha##NM_001190919|THRA|7067|thyroid hormone receptor, alpha##AB209346|THRA|7067|thyroid hormone receptor, alpha##BC035137|THRA|7067|thyroid hormone receptor, alpha##NM_001190918|THRA|7067|thyroid hormone receptor, alpha##NM_003250|THRA|7067|thyroid hormone receptor, alpha##NM_199334|THRA|7067|thyroid hormone receptor, alpha##X55005|THRA|7067|thyroid hormone receptor, alpha##BC000261|THRA|7067|thyroid hormone receptor, alpha##BC002728|THRA|7067|thyroid hormone receptor, alpha##M24899|THRA|7067|thyroid hormone receptor, alpha##Y00479|THRA|7067|thyroid hormone receptor, alpha	1.585463	denovo_WM_21:-9:0.830	denovo_WM_21:18:0.755
chr22	40440191	40440354	reg1000061.p1	10.719	+	TSC_hg19_v1_chr22_+_40390935 BC031099 NM_138435	-49328	+	AK303280 AK303657 AK312830 TSC_hg19_v1_chr22_+_40322634 AK303470	-117648	+	TSC_hg19_v1_chr22_+_40297183 AF129476 AF090456 CR456498 Y18051	-143025	+	TSC_hg19_v1_chr22_+_40440774 NM_001024843	637	+	TSC_hg19_v1_chr22_+_40441403 BC028626	1160	+	TSC_hg19_v1_chr22_+_40573938 NM_001162501 NM_015088 AK296590 AK294519 AB029016	133727	+	BC031099|FAM83F|113828|family with sequence similarity 83, member F##NM_138435|FAM83F|113828|family with sequence similarity 83, member F##AK303280|GRAP2|9402|GRB2-related adaptor protein 2##AK303657|GRAP2|9402|GRB2-related adaptor protein 2##AK312830|GRAP2|9402|GRB2-related adaptor protein 2##AK303470|GRAP2|9402|GRB2-related adaptor protein 2##AF129476|GRAP2|9402|GRB2-related adaptor protein 2##AF090456|GRAP2|9402|GRB2-related adaptor protein 2##CR456498|GRAP2|9402|GRB2-related adaptor protein 2##Y18051|GRAP2|9402|GRB2-related adaptor protein 2##NM_001024843|TNRC6B|23112|trinucleotide repeat containing 6B##BC028626|TNRC6B|23112|trinucleotide repeat containing 6B##NM_001162501|TNRC6B|23112|trinucleotide repeat containing 6B##NM_015088|TNRC6B|23112|trinucleotide repeat containing 6B##AK296590|TNRC6B|23112|trinucleotide repeat containing 6B##AK294519|TNRC6B|23112|trinucleotide repeat containing 6B##AB029016|TNRC6B|23112|trinucleotide repeat containing 6B	0.031686	
chr19	4471676	4471860	reg1000037.p1	10.700	+	AF272893 NM_025241	-13979	-	AF272894 BC008288 NM_001171091	-16479	-	BC067093 NM_005483 BC052620 TSC_hg19_v1_chr19_+_4402664 BC041606 AB527824 U20979 BC005813 BC011560	-69052	+	TSC_hg19_v1_chr19_+_4472263 NM_001001520 NM_032631 AY358600 AF294267 BC000755 CU674386 DQ892175 DQ895370	579	+	BC009449 TSC_hg19_v1_chr19_+_4488757	16958	+	NM_001080400	45947	-	AF272893|UBXN6|80700|UBX domain protein 6##NM_025241|UBXN6|80700|UBX domain protein 6##AF272894|UBXN6|80700|UBX domain protein 6##BC008288|UBXN6|80700|UBX domain protein 6##NM_001171091|UBXN6|80700|UBX domain protein 6##BC067093|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##NM_005483|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC052620|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC041606|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##U20979|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC005813|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC011560|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##NM_001001520|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##NM_032631|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##AY358600|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##AF294267|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##BC000755|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##DQ892175|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##DQ895370|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##BC009449|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##NM_001080400|PLIN4|729359|perilipin 4	0.461709	denovo_WM_21:-80:0.426
chr11	62599174	62599294	reg1000258.p1	10.698	+	BT019646 BT019647 CU678088 U26648 TSC_hg19_v1_chr11_-_62599128 AB464274	-359	-	AF112880 AF126246 AJ132712 AB528336 DQ892931 DQ896180 CU678798 BC028041 AB209915 BC004904 TSC_hg19_v1_chr11_-_62572913 AK304743 AK304082 AK307998 AK307961 AK304137 NM_001081491 NM_006362	-26339	-	BC042801 TSC_hg19_v1_chr11_-_62559478 BC008643 BC094837 BC035565 BC020914 NM_001080501 BC127679	-39777	-	TSC_hg19_v1_chr11_-_62599513 BC002645	247	-	TSC_hg19_v1_chr11_-_62599524 AK296675 AK313497 BC012137 BX537426 NM_001244666 NM_003164	368	-	TSC_hg19_v1_chr11_-_62607063 CU675359 AK303186 AY500828 BC006351	7831	-	BT019646|STX5|6811|syntaxin 5##BT019647|STX5|6811|syntaxin 5##U26648|STX5|6811|syntaxin 5##AF112880|NXF1|10482|nuclear RNA export factor 1##AF126246|NXF1|10482|nuclear RNA export factor 1##AJ132712|NXF1|10482|nuclear RNA export factor 1##DQ892931|NXF1|10482|nuclear RNA export factor 1##DQ896180|NXF1|10482|nuclear RNA export factor 1##BC028041|NXF1|10482|nuclear RNA export factor 1##AB209915|NXF1|10482|nuclear RNA export factor 1##BC004904|NXF1|10482|nuclear RNA export factor 1##AK304743|NXF1|10482|nuclear RNA export factor 1##AK304082|NXF1|10482|nuclear RNA export factor 1##AK307998|NXF1|10482|nuclear RNA export factor 1##AK307961|NXF1|10482|nuclear RNA export factor 1##AK304137|NXF1|10482|nuclear RNA export factor 1##NM_001081491|NXF1|10482|nuclear RNA export factor 1##NM_006362|NXF1|10482|nuclear RNA export factor 1##BC042801|TMEM223|79064|transmembrane protein 223##BC008643|TMEM223|79064|transmembrane protein 223##BC094837|TMEM223|79064|transmembrane protein 223##BC035565|TMEM223|79064|transmembrane protein 223##BC020914|TMEM223|79064|transmembrane protein 223##NM_001080501|TMEM223|79064|transmembrane protein 223##BC127679|TMEM223|79064|transmembrane protein 223##BC002645|STX5|6811|syntaxin 5##AK296675|STX5|6811|syntaxin 5##AK313497|STX5|6811|syntaxin 5##BC012137|STX5|6811|syntaxin 5##BX537426|STX5|6811|syntaxin 5##NM_001244666|STX5|6811|syntaxin 5##NM_003164|STX5|6811|syntaxin 5##AK303186|WDR74|54663|WD repeat domain 74##AY500828|WDR74|54663|WD repeat domain 74##BC006351|WDR74|54663|WD repeat domain 74	0.704735	denovo_WM_21:39:0.705
chr15	75744143	75744327	reg1000156.p1	10.696	+	TSC_hg19_v1_chr15_-_75744032 AK096477 NM_001145358	-178	-	BC137098 BC137099 AF418569 AK027559 NM_015477 BC066364 TSC_hg19_v1_chr15_-_75744028 BX649162	-333	-	AK225145 TSC_hg19_v1_chr15_-_75660949 AK294892 AK301170 AK311065	-83278	-	AL832463 NM_001145357	3888	-	CU687108 TSC_hg19_v1_chr15_-_75871151 BT007405 CU679831 DQ890986 BC010863	126884	-	TSC_hg19_v1_chr15_-_75871604 M83738 NM_002833	127331	-	AK096477|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##NM_001145358|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BC137098|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BC137099|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##AF418569|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##AK027559|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##NM_015477|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BC066364|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BX649162|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##AK225145|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AK294892|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AK301170|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AK311065|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AL832463|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##NM_001145357|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BT007405|PTPN9|5780|protein tyrosine phosphatase, non-receptor type 9##DQ890986|PTPN9|5780|protein tyrosine phosphatase, non-receptor type 9##BC010863|PTPN9|5780|protein tyrosine phosphatase, non-receptor type 9##M83738|PTPN9|5780|protein tyrosine phosphatase, non-receptor type 9##NM_002833|PTPN9|5780|protein tyrosine phosphatase, non-receptor type 9	0.143855	
chr14	50087299	50087436	reg1000213.p1	10.663	+	TSC_hg19_v1_chr14_-_50087339 BC003145 BC000741 BC070207 AK311959 AB063609 NM_001001 BC107716	-23	-	NM_152329 NM_203467 TSC_hg19_v1_chr14_+_50065473 BC030142 BX648029	-21907	+	BC032813 BC035313 L31610 U14973 AK026649 BC015974 NM_001030001 NM_001032 AB055780 AK307833 TSC_hg19_v1_chr14_-_50053095	-34274	-	TSC_hg19_v1_chr14_+_50087493 NM_002408 BC006390 BC018912 AK075199 AK056167 AK293231 DQ892713 DQ896859	340	+	BC013322 TSC_hg19_v1_chr14_-_50100693 BX248264 BC011400 AK001425	13329	-	FJ158843 TSC_hg19_v1_chr14_-_50101912	14525	-	BC003145|RPL36AL|6166|ribosomal protein L36a-like##BC000741|RPL36AL|6166|ribosomal protein L36a-like##BC070207|RPL36AL|6166|ribosomal protein L36a-like##AK311959|RPL36AL|6166|ribosomal protein L36a-like##AB063609|RPL36AL|6166|ribosomal protein L36a-like##NM_001001|RPL36AL|6166|ribosomal protein L36a-like##BC107716|RPL36AL|6166|ribosomal protein L36a-like##NM_152329|LRR1|122769|leucine rich repeat protein 1##NM_203467|LRR1|122769|leucine rich repeat protein 1##BC030142|LRR1|122769|leucine rich repeat protein 1##BX648029|LRR1|122769|leucine rich repeat protein 1##BC032813|RPS29|6235|ribosomal protein S29##BC035313|RPS29|6235|ribosomal protein S29##L31610|RPS29|6235|ribosomal protein S29##U14973|RPS29|6235|ribosomal protein S29##AK026649|RPS29|6235|ribosomal protein S29##BC015974|RPS29|6235|ribosomal protein S29##NM_001030001|RPS29|6235|ribosomal protein S29##NM_001032|RPS29|6235|ribosomal protein S29##AB055780|RPS29|6235|ribosomal protein S29##NM_002408|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##BC006390|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##BC018912|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK075199|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK056167|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK293231|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##DQ892713|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##DQ896859|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##BC013322|DNAAF2|55172|dynein, axonemal, assembly factor 2##BX248264|DNAAF2|55172|dynein, axonemal, assembly factor 2##BC011400|DNAAF2|55172|dynein, axonemal, assembly factor 2##AK001425|DNAAF2|55172|dynein, axonemal, assembly factor 2##FJ158843|DNAAF2|55172|dynein, axonemal, assembly factor 2	0.752739	denovo_WM_21:35:0.753
chr12	133264038	133264154	reg1000151.p1	10.653	+	TSC_hg19_v1_chr12_-_133264011 AF128542	-75	-	TSC_hg19_v1_chr12_-_133263981 U49356 S60080 BC144561 L09561 NM_006231	-156	-	BC021559 TSC_hg19_v1_chr12_-_133215909	-48254	-	TSC_hg19_v1_chr12_+_133264236 AF250136 NM_018663 BC073997 AY044439	108	+	TSC_hg19_v1_chr12_+_133287427 NM_001170543 NM_001170544 NM_138575 EU249757 BC008196	23340	+	AK025933 TSC_hg19_v1_chr12_-_133306584	42462	-	AF128542|POLE|5426|polymerase (DNA directed), epsilon##U49356|POLE|5426|polymerase (DNA directed), epsilon##S60080|POLE|5426|polymerase (DNA directed), epsilon##BC144561|POLE|5426|polymerase (DNA directed), epsilon##L09561|POLE|5426|polymerase (DNA directed), epsilon##NM_006231|POLE|5426|polymerase (DNA directed), epsilon##BC021559|POLE|5426|polymerase (DNA directed), epsilon##AF250136|PXMP2|5827|peroxisomal membrane protein 2, 22kDa##NM_018663|PXMP2|5827|peroxisomal membrane protein 2, 22kDa##BC073997|PXMP2|5827|peroxisomal membrane protein 2, 22kDa##AY044439|PXMP2|5827|peroxisomal membrane protein 2, 22kDa##NM_001170543|PGAM5|192111|phosphoglycerate mutase family member 5##NM_001170544|PGAM5|192111|phosphoglycerate mutase family member 5##NM_138575|PGAM5|192111|phosphoglycerate mutase family member 5##EU249757|PGAM5|192111|phosphoglycerate mutase family member 5##BC008196|PGAM5|192111|phosphoglycerate mutase family member 5##AK025933|ANKLE2|23141|ankyrin repeat and LEM domain containing 2	0.039078	
chr16	2264910	2265034	reg1000120.p1	10.638	+	TSC_hg19_v1_chr16_-_2264800 AB590051 BC035985 NM_001042371	-156	-	BC039154 NM_182563	-3933	-	TSC_hg19_v1_chr16_+_2255760 AK022227 NM_001199174	-9176	+	TSC_hg19_v1_chr16_+_2273591 NM_004424 BC080524 AK225132 U87269 AK296784 BC014068	8604	+	TSC_hg19_v1_chr16_+_2273604 AK290329	8641	+	BC063710 NM_001374 BC035205	21496	+	BC035985|PGP|283871|phosphoglycolate phosphatase##NM_001042371|PGP|283871|phosphoglycolate phosphatase##BC039154|C16orf79|283870|chromosome 16 open reading frame 79##NM_182563|C16orf79|283870|chromosome 16 open reading frame 79##AK022227|MLST8|64223|MTOR associated protein, LST8 homolog (S. cerevisiae)##NM_001199174|MLST8|64223|MTOR associated protein, LST8 homolog (S. cerevisiae)##NM_004424|E4F1|1877|E4F transcription factor 1##BC080524|E4F1|1877|E4F transcription factor 1##AK225132|E4F1|1877|E4F transcription factor 1##U87269|E4F1|1877|E4F transcription factor 1##AK296784|E4F1|1877|E4F transcription factor 1##BC014068|E4F1|1877|E4F transcription factor 1##AK290329|E4F1|1877|E4F transcription factor 1##BC063710|DNASE1L2|1775|deoxyribonuclease I-like 2##NM_001374|DNASE1L2|1775|deoxyribonuclease I-like 2##BC035205|DNASE1L2|1775|deoxyribonuclease I-like 2	2.674328	denovo_WM_21:13:0.208	denovo_WM_21:43:0.776	denovo_WM_21:-81:0.751	denovo_WM_21:-110:0.878
chr1	10270399	10270531	reg1000253.p1	10.609	+	AB014584 TSC_hg19_v1_chr1_+_10093218	-177252	+	TSC_hg19_v1_chr1_+_10093015 AB028839 NM_001105562 NM_006048	-177450	+	BC063013 NM_052960 BC033883 AF399927 AK312027 AY145438 CU687628	-213181	+	TSC_hg19_v1_chr1_+_10270680 AK308121 NM_015074 NM_183416 AF257176 AY139835	306	+	NM_002631 TSC_hg19_v1_chr1_+_10459125 AK300952 AK290404 AK296889 AK303898 AK304423 BC000368 U30255 AB463169 AK298830	188664	+	AF521016 NM_198544 NM_199006 NM_199294	219693	+	AB014584|UBE4B|10277|ubiquitination factor E4B##AB028839|UBE4B|10277|ubiquitination factor E4B##NM_001105562|UBE4B|10277|ubiquitination factor E4B##NM_006048|UBE4B|10277|ubiquitination factor E4B##BC063013|RBP7|116362|retinol binding protein 7, cellular##NM_052960|RBP7|116362|retinol binding protein 7, cellular##BC033883|RBP7|116362|retinol binding protein 7, cellular##AF399927|RBP7|116362|retinol binding protein 7, cellular##AK312027|RBP7|116362|retinol binding protein 7, cellular##AY145438|RBP7|116362|retinol binding protein 7, cellular##AK308121|KIF1B|23095|kinesin family member 1B##NM_015074|KIF1B|23095|kinesin family member 1B##NM_183416|KIF1B|23095|kinesin family member 1B##AF257176|KIF1B|23095|kinesin family member 1B##AY139835|KIF1B|23095|kinesin family member 1B##NM_002631|PGD|5226|phosphogluconate dehydrogenase##AK300952|PGD|5226|phosphogluconate dehydrogenase##AK290404|PGD|5226|phosphogluconate dehydrogenase##AK296889|PGD|5226|phosphogluconate dehydrogenase##AK303898|PGD|5226|phosphogluconate dehydrogenase##AK304423|PGD|5226|phosphogluconate dehydrogenase##BC000368|PGD|5226|phosphogluconate dehydrogenase##U30255|PGD|5226|phosphogluconate dehydrogenase##AK298830|PGD|5226|phosphogluconate dehydrogenase##AF521016|APITD1-CORT|100526739|APITD1-CORT readthrough##NM_198544|APITD1-CORT|100526739|APITD1-CORT readthrough##NM_199006|APITD1-CORT|100526739|APITD1-CORT readthrough##NM_199294|APITD1|378708|apoptosis-inducing, TAF9-like domain 1	1.419389	denovo_WM_21:6:0.556	denovo_WM_21:37:0.864
chr5	159546655	159546811	reg1000117.p2	10.601	+	TSC_hg19_v1_chr5_-_159546405 AB067522 BC035076 BC105110 BC143437 NM_001130864 NM_052927	-274	-	AK222641 TSC_hg19_v1_chr5_+_159436161 AK222984 NM_003314 U46570	-110566	+	TSC_hg19_v1_chr5_+_159436145 AK315262	-110586	+	DQ132786 NM_001130958	67640	+	NM_001040442 AB528665	79347	+	NM_001445 X90908 U19869 CU692652	109766	+	AB067522|PWWP2A|114825|PWWP domain containing 2A##BC035076|PWWP2A|114825|PWWP domain containing 2A##BC105110|PWWP2A|114825|PWWP domain containing 2A##BC143437|PWWP2A|114825|PWWP domain containing 2A##NM_001130864|PWWP2A|114825|PWWP domain containing 2A##NM_052927|PWWP2A|114825|PWWP domain containing 2A##AK222641|TTC1|7265|tetratricopeptide repeat domain 1##AK222984|TTC1|7265|tetratricopeptide repeat domain 1##NM_003314|TTC1|7265|tetratricopeptide repeat domain 1##U46570|TTC1|7265|tetratricopeptide repeat domain 1##AK315262|TTC1|7265|tetratricopeptide repeat domain 1##DQ132786|FABP6|2172|fatty acid binding protein 6, ileal##NM_001130958|FABP6|2172|fatty acid binding protein 6, ileal##NM_001040442|FABP6|2172|fatty acid binding protein 6, ileal##NM_001445|FABP6|2172|fatty acid binding protein 6, ileal##X90908|FABP6|2172|fatty acid binding protein 6, ileal##U19869|FABP6|2172|fatty acid binding protein 6, ileal	1.759259	denovo_WM_21:23:0.774
chr6	159527894	159528002	reg1000243.p1	10.590	+	TSC_hg19_v1_chr6_-_159466024 BC111731 AK097090 BC015859 AL832662 AF385429 AF385430 NM_054114 NM_138810 NM_152133	-61847	-	TSC_hg19_v1_chr6_-_159421220 BC050604 NM_031924 AK057931 BC011590	-106727	-	AF353618 AK057655 TSC_hg19_v1_chr6_-_159420825	-107129	-	DQ009660 NM_032532 TSC_hg19_v1_chr6_+_159590431	62482	+	AY280720 AY280721 AY280719 BT006967 AB528757 DQ890587 DQ893752 AM392836 X07834 AK313082 BC012423 BC035422 X15132 X59445 BC016934 TSC_hg19_v1_chr6_-_160114277 Y00472 AK296809 AK304766 AL050388 X14322 M36693 Y00985	586302	-	TSC_hg19_v1_chr6_-_160114357 NM_000636 NM_001024465 NM_001024466	586414	-	BC111731|TAGAP|117289|T-cell activation RhoGTPase activating protein##AK097090|TAGAP|117289|T-cell activation RhoGTPase activating protein##BC015859|TAGAP|117289|T-cell activation RhoGTPase activating protein##AL832662|TAGAP|117289|T-cell activation RhoGTPase activating protein##AF385429|TAGAP|117289|T-cell activation RhoGTPase activating protein##AF385430|TAGAP|117289|T-cell activation RhoGTPase activating protein##NM_054114|TAGAP|117289|T-cell activation RhoGTPase activating protein##NM_138810|TAGAP|117289|T-cell activation RhoGTPase activating protein##NM_152133|TAGAP|117289|T-cell activation RhoGTPase activating protein##BC050604|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##NM_031924|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AK057931|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##BC011590|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AF353618|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AK057655|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##DQ009660|FNDC1|84624|fibronectin type III domain containing 1##NM_032532|FNDC1|84624|fibronectin type III domain containing 1##AY280720|SOD2|6648|superoxide dismutase 2, mitochondrial##AY280721|SOD2|6648|superoxide dismutase 2, mitochondrial##AY280719|SOD2|6648|superoxide dismutase 2, mitochondrial##BT006967|SOD2|6648|superoxide dismutase 2, mitochondrial##DQ890587|SOD2|6648|superoxide dismutase 2, mitochondrial##DQ893752|SOD2|6648|superoxide dismutase 2, mitochondrial##AM392836|SOD2|6648|superoxide dismutase 2, mitochondrial##X07834|SOD2|6648|superoxide dismutase 2, mitochondrial##AK313082|SOD2|6648|superoxide dismutase 2, mitochondrial##BC012423|SOD2|6648|superoxide dismutase 2, mitochondrial##BC035422|SOD2|6648|superoxide dismutase 2, mitochondrial##X15132|SOD2|6648|superoxide dismutase 2, mitochondrial##X59445|SOD2|6648|superoxide dismutase 2, mitochondrial##BC016934|SOD2|6648|superoxide dismutase 2, mitochondrial##Y00472|SOD2|6648|superoxide dismutase 2, mitochondrial##AK296809|SOD2|6648|superoxide dismutase 2, mitochondrial##AK304766|SOD2|6648|superoxide dismutase 2, mitochondrial##AL050388|SOD2|6648|superoxide dismutase 2, mitochondrial##X14322|SOD2|6648|superoxide dismutase 2, mitochondrial##M36693|SOD2|6648|superoxide dismutase 2, mitochondrial##Y00985|SOD2|6648|superoxide dismutase 2, mitochondrial##NM_000636|SOD2|6648|superoxide dismutase 2, mitochondrial##NM_001024465|SOD2|6648|superoxide dismutase 2, mitochondrial##NM_001024466|SOD2|6648|superoxide dismutase 2, mitochondrial	1.537974	denovo_WM_21:17:0.548	denovo_WM_21:-18:0.990
chr9	131843293	131843412	reg1000031.p2	10.572	+	AK303036 BC009114 NM_032809	-44120	+	TSC_hg19_v1_chr9_+_131798900 AK074127 AK075421 AK301241	-44422	+	EU832345 EU832430 TSC_hg19_v1_chr9_-_131790591 AF257319 AF258589 AB058751 BC014635 NM_020145	-52820	-	TSC_hg19_v1_chr9_+_131843403 AY189675 AK290713 NM_001135917 NM_020438 BC067858 AK293627 BC033686 BC022553 BC009493 BC040152	43	+	TSC_hg19_v1_chr9_+_131870105 DQ655950 DQ655951	26777	+	X78706 TSC_hg19_v1_chr9_-_131872824 BT006801 CU674362	29452	-	AK303036|FAM73B|84895|family with sequence similarity 73, member B##BC009114|FAM73B|84895|family with sequence similarity 73, member B##NM_032809|FAM73B|84895|family with sequence similarity 73, member B##AK074127|FAM73B|84895|family with sequence similarity 73, member B##AK075421|FAM73B|84895|family with sequence similarity 73, member B##AK301241|FAM73B|84895|family with sequence similarity 73, member B##EU832345|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##EU832430|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##AF257319|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##AF258589|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##AB058751|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##BC014635|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##NM_020145|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##AY189675|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##AK290713|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##NM_001135917|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##NM_020438|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##BC067858|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##AK293627|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##BC033686|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##BC022553|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##BC009493|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##BC040152|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##X78706|CRAT|1384|carnitine O-acetyltransferase##BT006801|CRAT|1384|carnitine O-acetyltransferase	1.369108	denovo_WM_21:24:0.781	denovo_WM_21:-35:0.207
chr19	4402347	4402498	reg1000260.p2	10.563	+	BC001270 TSC_hg19_v1_chr19_-_4400513 AK315450 BC098565 AK299166 NM_001199943 NM_003025	-1869	-	TSC_hg19_v1_chr19_-_4400419 AY364240 CR542087 AB527297 DQ891258 DQ894444 U65999 X99656 AK097616 NM_001199944	-2029	-	NM_001159846 NM_032868 AK027887 AK308468 TSC_hg19_v1_chr19_+_4343562 BC032652	-58863	+	BC067093 NM_005483 BC052620 TSC_hg19_v1_chr19_+_4402664 BC041606 AB527824 U20979 BC005813 BC011560	294	+	AF272894 BC008288 NM_001171091	52867	-	AF272893 NM_025241	55367	-	BC001270|SH3GL1|6455|SH3-domain GRB2-like 1##AK315450|SH3GL1|6455|SH3-domain GRB2-like 1##BC098565|SH3GL1|6455|SH3-domain GRB2-like 1##AK299166|SH3GL1|6455|SH3-domain GRB2-like 1##NM_001199943|SH3GL1|6455|SH3-domain GRB2-like 1##NM_003025|SH3GL1|6455|SH3-domain GRB2-like 1##AY364240|SH3GL1|6455|SH3-domain GRB2-like 1##CR542087|SH3GL1|6455|SH3-domain GRB2-like 1##DQ891258|SH3GL1|6455|SH3-domain GRB2-like 1##DQ894444|SH3GL1|6455|SH3-domain GRB2-like 1##U65999|SH3GL1|6455|SH3-domain GRB2-like 1##X99656|SH3GL1|6455|SH3-domain GRB2-like 1##AK097616|SH3GL1|6455|SH3-domain GRB2-like 1##NM_001199944|SH3GL1|6455|SH3-domain GRB2-like 1##NM_001159846|MPND|84954|MPN domain containing##NM_032868|MPND|84954|MPN domain containing##AK027887|MPND|84954|MPN domain containing##AK308468|MPND|84954|MPN domain containing##BC032652|MPND|84954|MPN domain containing##BC067093|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##NM_005483|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC052620|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC041606|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##U20979|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC005813|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC011560|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##AF272894|UBXN6|80700|UBX domain protein 6##BC008288|UBXN6|80700|UBX domain protein 6##NM_001171091|UBXN6|80700|UBX domain protein 6##AF272893|UBXN6|80700|UBX domain protein 6##NM_025241|UBXN6|80700|UBX domain protein 6	0.975963	denovo_WM_21:30:0.911
chr13	103451334	103451488	reg1000263.p2	10.557	+	BC051860 TSC_hg19_v1_chr13_-_103451388 AY358959 AK074974 AK222567 AK225103 AK309238 BC001297 NM_024089	-74	-	NM_138779 TSC_hg19_v1_chr13_-_103426169	-25253	-	TSC_hg19_v1_chr13_-_103426133 BC048011 BC015148	-25274	-	AF411385 NM_001159596 NM_017693 TSC_hg19_v1_chr13_+_103451468 AK290658 AK304391 BC112339	230	+	NM_001204425 BC075084 BC075085 AB209312 AK000166 AK225229 BC020663 BC051813	8249	+	TSC_hg19_v1_chr13_+_103498240 NM_000123 BC031522 AF462447	46798	+	BC051860|KDELC1|79070|KDEL (Lys-Asp-Glu-Leu) containing 1##AY358959|KDELC1|79070|KDEL (Lys-Asp-Glu-Leu) containing 1##AK074974|KDELC1|79070|KDEL (Lys-Asp-Glu-Leu) containing 1##AK222567|KDELC1|79070|KDEL (Lys-Asp-Glu-Leu) containing 1##AK225103|KDELC1|79070|KDEL (Lys-Asp-Glu-Leu) containing 1##AK309238|KDELC1|79070|KDEL (Lys-Asp-Glu-Leu) containing 1##BC001297|KDELC1|79070|KDEL (Lys-Asp-Glu-Leu) containing 1##NM_024089|KDELC1|79070|KDEL (Lys-Asp-Glu-Leu) containing 1##NM_138779|C13orf27|93081|chromosome 13 open reading frame 27##BC048011|C13orf27|93081|chromosome 13 open reading frame 27##BC015148|C13orf27|93081|chromosome 13 open reading frame 27##AF411385|BIVM|54841|basic, immunoglobulin-like variable motif containing##NM_001159596|BIVM|54841|basic, immunoglobulin-like variable motif containing##NM_017693|BIVM|54841|basic, immunoglobulin-like variable motif containing##AK290658|BIVM|54841|basic, immunoglobulin-like variable motif containing##AK304391|BIVM|54841|basic, immunoglobulin-like variable motif containing##BC112339|BIVM|54841|basic, immunoglobulin-like variable motif containing##NM_001204425|BIVM-ERCC5|100533467|BIVM-ERCC5 readthrough##BC075084|BIVM|54841|basic, immunoglobulin-like variable motif containing##BC075085|BIVM|54841|basic, immunoglobulin-like variable motif containing##AB209312|BIVM-ERCC5|100533467|BIVM-ERCC5 readthrough##AK000166|BIVM|54841|basic, immunoglobulin-like variable motif containing##AK225229|BIVM|54841|basic, immunoglobulin-like variable motif containing##BC020663|BIVM|54841|basic, immunoglobulin-like variable motif containing##BC051813|BIVM|54841|basic, immunoglobulin-like variable motif containing##NM_000123|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##BC031522|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##AF462447|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5	0.0	
chr19	13944475	13944632	reg1000286.p1	10.535	+	TSC_hg19_v1_chr19_+_13906256 AK024452 NM_023072	-38308	+	TSC_hg19_v1_chr19_+_13885286 BC015465 AF086483 AF078852 DQ891569 DQ894761 AK311855	-59269	+	TSC_hg19_v1_chr19_+_13885269 NM_014047	-59288	+	AL832183 BX640708 TSC_hg19_v1_chr19_-_13947102	2549	-	BC101209 BC101210 NM_001098622	43509	+	AK097431 NM_024323	72355	-	AK024452|ZSWIM4|65249|zinc finger, SWIM-type containing 4##NM_023072|ZSWIM4|65249|zinc finger, SWIM-type containing 4##BC015465|C19orf53|28974|chromosome 19 open reading frame 53##AF086483|C19orf53|28974|chromosome 19 open reading frame 53##AF078852|C19orf53|28974|chromosome 19 open reading frame 53##DQ891569|C19orf53|28974|chromosome 19 open reading frame 53##DQ894761|C19orf53|28974|chromosome 19 open reading frame 53##AK311855|C19orf53|28974|chromosome 19 open reading frame 53##NM_014047|C19orf53|28974|chromosome 19 open reading frame 53##AL832183|LOC284454|284454|uncharacterized LOC284454##BX640708|LOC284454|284454|uncharacterized LOC284454##BC101209|NANOS3|342977|nanos homolog 3 (Drosophila)##BC101210|NANOS3|342977|nanos homolog 3 (Drosophila)##NM_001098622|NANOS3|342977|nanos homolog 3 (Drosophila)##AK097431|C19orf57|79173|chromosome 19 open reading frame 57##NM_024323|C19orf57|79173|chromosome 19 open reading frame 57	1.012128	denovo_WM_21:33:0.972
chr22	29999283	29999409	reg1000198.p1	10.533	+	AJ001258 NM_003634	-22021	-	BC002371 BC006473 TSC_hg19_v1_chr22_-_29977083 AK290953 AK098367 AK298816 NM_001202502 AK314407	-22251	-	NM_001002878 NM_001002879 BC003615 TSC_hg19_v1_chr22_-_29949699 AK025385 AB023200 AK225752 NM_001002877 NM_003678	-49649	-	NM_000268 NM_016418 NM_181825 NM_181828 NM_181829 NM_181830 NM_181831 NM_181832 NM_181833 TSC_hg19_v1_chr22_+_29999554	205	+	TSC_hg19_v1_chr22_+_29999565 AF369657 AF369658 AF369659 AF369660	236	+	AK297116 TSC_hg19_v1_chr22_+_29999605	259	+	AJ001258|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##NM_003634|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##BC002371|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##BC006473|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##AK290953|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##AK098367|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##AK298816|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##NM_001202502|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##AK314407|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##NM_001002878|THOC5|8563|THO complex 5##NM_001002879|THOC5|8563|THO complex 5##BC003615|THOC5|8563|THO complex 5##AK025385|THOC5|8563|THO complex 5##AB023200|THOC5|8563|THO complex 5##AK225752|THOC5|8563|THO complex 5##NM_001002877|THOC5|8563|THO complex 5##NM_003678|THOC5|8563|THO complex 5##NM_000268|NF2|4771|neurofibromin 2 (merlin)##NM_016418|NF2|4771|neurofibromin 2 (merlin)##NM_181825|NF2|4771|neurofibromin 2 (merlin)##NM_181828|NF2|4771|neurofibromin 2 (merlin)##NM_181829|NF2|4771|neurofibromin 2 (merlin)##NM_181830|NF2|4771|neurofibromin 2 (merlin)##NM_181831|NF2|4771|neurofibromin 2 (merlin)##NM_181832|NF2|4771|neurofibromin 2 (merlin)##NM_181833|NF2|4771|neurofibromin 2 (merlin)##AF369657|NF2|4771|neurofibromin 2 (merlin)##AF369658|NF2|4771|neurofibromin 2 (merlin)##AF369659|NF2|4771|neurofibromin 2 (merlin)##AF369660|NF2|4771|neurofibromin 2 (merlin)##AK297116|NF2|4771|neurofibromin 2 (merlin)	0.9592	
chr16	3054006	3054112	reg1000131.p1	10.515	+	TSC_hg19_v1_chr16_-_3030479 NM_004203 NM_182687	-23553	-	AK098452 TSC_hg19_v1_chr16_-_3030418 AK301926 AK303005 AK097642	-23652	-	TSC_hg19_v1_chr16_+_3019556 AK291373 AK054564 AK092173 AX747391 BC033703 AL832527 EU831903 EU831998 AY424282	-34489	+	AK091002 NM_020982	8397	+	BC008934 AK075329 NM_021195	14115	-	TSC_hg19_v1_chr16_+_3070368 NM_016639 BC002718 AB035480 AB035481 AF191148 BC064377 BC020538 DQ892968 DQ896216 AB590147	16296	+	NM_004203|PKMYT1|9088|protein kinase, membrane associated tyrosine/threonine 1##NM_182687|PKMYT1|9088|protein kinase, membrane associated tyrosine/threonine 1##AK098452|PKMYT1|9088|protein kinase, membrane associated tyrosine/threonine 1##AK301926|PKMYT1|9088|protein kinase, membrane associated tyrosine/threonine 1##AK303005|PKMYT1|9088|protein kinase, membrane associated tyrosine/threonine 1##AK097642|PKMYT1|9088|protein kinase, membrane associated tyrosine/threonine 1##AK291373|PAQR4|124222|progestin and adipoQ receptor family member IV##AK054564|PAQR4|124222|progestin and adipoQ receptor family member IV##AK092173|PAQR4|124222|progestin and adipoQ receptor family member IV##BC033703|PAQR4|124222|progestin and adipoQ receptor family member IV##AL832527|PAQR4|124222|progestin and adipoQ receptor family member IV##EU831903|PAQR4|124222|progestin and adipoQ receptor family member IV##EU831998|PAQR4|124222|progestin and adipoQ receptor family member IV##AY424282|PAQR4|124222|progestin and adipoQ receptor family member IV##AK091002|CLDN9|9080|claudin 9##NM_020982|CLDN9|9080|claudin 9##BC008934|CLDN6|9074|claudin 6##AK075329|CLDN6|9074|claudin 6##NM_021195|CLDN6|9074|claudin 6##NM_016639|TNFRSF12A|51330|tumor necrosis factor receptor superfamily, member 12A##BC002718|TNFRSF12A|51330|tumor necrosis factor receptor superfamily, member 12A##AB035480|TNFRSF12A|51330|tumor necrosis factor receptor superfamily, member 12A##AB035481|TNFRSF12A|51330|tumor necrosis factor receptor superfamily, member 12A##AF191148|TNFRSF12A|51330|tumor necrosis factor receptor superfamily, member 12A##BC064377|TNFRSF12A|51330|tumor necrosis factor receptor superfamily, member 12A##BC020538|TNFRSF12A|51330|tumor necrosis factor receptor superfamily, member 12A##DQ892968|TNFRSF12A|51330|tumor necrosis factor receptor superfamily, member 12A##DQ896216|TNFRSF12A|51330|tumor necrosis factor receptor superfamily, member 12A	2.76557	denovo_WM_21:32:0.602	denovo_WM_21:-37:0.994	denovo_WM_21:63:0.894	denovo_WM_21:-97:0.276
chr16	67225881	67226008	reg1000211.p1	10.511	+	AK092858 AX747772 BC034287 AK292004 AK092906 AX747800 AK300915 AY255669 NM_178516	-1892	-	TSC_hg19_v1_chr16_-_67217867 AL834156 NM_001040715	-8082	-	TSC_hg19_v1_chr16_-_67217476 AK094787 AK096855 BC080183	-8503	-	TSC_hg19_v1_chr16_+_67226057 NM_001950 U15641	103	+	TSC_hg19_v1_chr16_+_67226087 BC010079 BC031071 S75174	139	+	TSC_hg19_v1_chr16_+_67226106 BC021050 BC033180 X86096 AB451292 AB451425 DQ892803	182	+	AK092858|EXOC3L1|283849|exocyst complex component 3-like 1##BC034287|EXOC3L1|283849|exocyst complex component 3-like 1##AK292004|EXOC3L1|283849|exocyst complex component 3-like 1##AK092906|EXOC3L1|283849|exocyst complex component 3-like 1##AK300915|EXOC3L1|283849|exocyst complex component 3-like 1##NM_178516|EXOC3L1|283849|exocyst complex component 3-like 1##AL834156|KIAA0895L|653319|KIAA0895-like##NM_001040715|KIAA0895L|653319|KIAA0895-like##AK094787|KIAA0895L|653319|KIAA0895-like##AK096855|KIAA0895L|653319|KIAA0895-like##BC080183|KIAA0895L|653319|KIAA0895-like##NM_001950|E2F4|1874|E2F transcription factor 4, p107/p130-binding##U15641|E2F4|1874|E2F transcription factor 4, p107/p130-binding##BC031071|E2F4|1874|E2F transcription factor 4, p107/p130-binding##S75174|E2F4|1874|E2F transcription factor 4, p107/p130-binding##BC021050|E2F4|1874|E2F transcription factor 4, p107/p130-binding##BC033180|E2F4|1874|E2F transcription factor 4, p107/p130-binding##X86096|E2F4|1874|E2F transcription factor 4, p107/p130-binding##AB451292|E2F4|1874|E2F transcription factor 4, p107/p130-binding##AB451425|E2F4|1874|E2F transcription factor 4, p107/p130-binding##DQ892803|E2F4|1874|E2F transcription factor 4, p107/p130-binding	0.0	
chr9	134248870	134248984	reg1000169.p1	10.499	+	TSC_hg19_v1_chr9_+_134165108 AK075207 NM_032728 BC006362 AK027568 AK315502 AB385550	-83699	+	BC049388 NM_033387 AK095423	-97008	-	TSC_hg19_v1_chr9_+_134001016 D14689 AB159230	-247877	+	TSC_hg19_v1_chr9_+_134269515 BC002872	20639	+	NM_013318 TSC_hg19_v1_chr9_+_134305488	56555	+	CU678266 TSC_hg19_v1_chr9_+_134305548	56613	+	AK075207|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##NM_032728|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##BC006362|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##AK027568|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##AK315502|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##BC049388|FAM78A|286336|family with sequence similarity 78, member A##NM_033387|FAM78A|286336|family with sequence similarity 78, member A##AK095423|FAM78A|286336|family with sequence similarity 78, member A##D14689|NUP214|8021|nucleoporin 214kDa##AB159230|NUP214|8021|nucleoporin 214kDa##BC002872|PRRC2B|84726|proline-rich coiled-coil 2B##NM_013318|PRRC2B|84726|proline-rich coiled-coil 2B	1.093504	denovo_WM_21:-44:0.972
chrX	46988578	46988713	reg1000284.p1	10.475	+	TSC_hg19_v1_chrX_+_46940238 AB028125 D31815	-48385	+	TSC_hg19_v1_chrX_+_46937889 BC073173 AB032064	-50715	+	TSC_hg19_v1_chrX_+_46937812 BC050371 BC058880 AK290136	-50808	+	TSC_hg19_v1_chrX_-_47004089 CR457239 BC107805 AK000501 AX810702	15432	-	TSC_hg19_v1_chrX_-_47004102 NM_001135998 NM_019056 AF044213	15465	-	BC010665 AF251063 TSC_hg19_v1_chrX_-_47004499 AY359056	15867	-	AB028125|RGN|9104|regucalcin (senescence marker protein-30)##D31815|RGN|9104|regucalcin (senescence marker protein-30)##BC073173|RGN|9104|regucalcin (senescence marker protein-30)##AB032064|RGN|9104|regucalcin (senescence marker protein-30)##BC050371|RGN|9104|regucalcin (senescence marker protein-30)##BC058880|RGN|9104|regucalcin (senescence marker protein-30)##AK290136|RGN|9104|regucalcin (senescence marker protein-30)##CR457239|NDUFB11|54539|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa##BC107805|NDUFB11|54539|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa##AK000501|NDUFB11|54539|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa##NM_001135998|NDUFB11|54539|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa##NM_019056|NDUFB11|54539|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa##AF044213|NDUFB11|54539|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa##BC010665|NDUFB11|54539|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa##AF251063|NDUFB11|54539|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa##AY359056|NDUFB11|54539|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa	0.408988	denovo_WM_21:-43:0.366
chr12	49259669	49259789	reg1000270.p1	10.441	+	AF498967 Y07923 AB464152 AB040147 AK292762 BC026356 NM_014470	-129	-	AF026402 BC002366 TSC_hg19_v1_chr12_-_49245925 AK294877 AK312379 AK128428 AK292921 NM_004818	-13797	-	NM_000725 NM_001206915 TSC_hg19_v1_chr12_+_49212307	-47446	+	NM_033124 AK302082 AK093051 AX747886 AF382188 AK314623 BC039317	38193	+	NM_001143781	58934	-	DQ892057 DQ895251 AF238079 BC027973 AY358998 BC048292 AK301455 TSC_hg19_v1_chr12_-_49319304 NM_001143782 NM_016594	59541	-	AF498967|RND1|27289|Rho family GTPase 1##Y07923|RND1|27289|Rho family GTPase 1##AB040147|RND1|27289|Rho family GTPase 1##AK292762|RND1|27289|Rho family GTPase 1##BC026356|RND1|27289|Rho family GTPase 1##NM_014470|RND1|27289|Rho family GTPase 1##AF026402|DDX23|9416|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23##BC002366|DDX23|9416|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23##AK294877|DDX23|9416|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23##AK312379|DDX23|9416|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23##AK128428|DDX23|9416|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23##AK292921|DDX23|9416|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23##NM_004818|DDX23|9416|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23##NM_000725|CACNB3|784|calcium channel, voltage-dependent, beta 3 subunit##NM_001206915|CACNB3|784|calcium channel, voltage-dependent, beta 3 subunit##NM_033124|CCDC65|85478|coiled-coil domain containing 65##AK302082|CCDC65|85478|coiled-coil domain containing 65##AK093051|CCDC65|85478|coiled-coil domain containing 65##AF382188|CCDC65|85478|coiled-coil domain containing 65##AK314623|CCDC65|85478|coiled-coil domain containing 65##BC039317|CCDC65|85478|coiled-coil domain containing 65##NM_001143781|FKBP11|51303|FK506 binding protein 11, 19 kDa##DQ892057|FKBP11|51303|FK506 binding protein 11, 19 kDa##DQ895251|FKBP11|51303|FK506 binding protein 11, 19 kDa##AF238079|FKBP11|51303|FK506 binding protein 11, 19 kDa##BC027973|FKBP11|51303|FK506 binding protein 11, 19 kDa##AY358998|FKBP11|51303|FK506 binding protein 11, 19 kDa##BC048292|FKBP11|51303|FK506 binding protein 11, 19 kDa##AK301455|FKBP11|51303|FK506 binding protein 11, 19 kDa##NM_001143782|FKBP11|51303|FK506 binding protein 11, 19 kDa##NM_016594|FKBP11|51303|FK506 binding protein 11, 19 kDa	0.944523	denovo_WM_21:-27:0.945
chr19	33166094	33166215	reg1000266.p1	10.415	+	BC050529 TSC_hg19_v1_chr19_-_33166076 AF447882 AL136784 AK054561 BC045605 NM_032139	-67	-	TSC_hg19_v1_chr19_+_33072095 NM_004708 AK293486 AB209040 BC015519 AF014955 DQ208400 AB590247 DQ893577 DQ894611 BT006694 CR456934	-94027	+	NM_207325 TSC_hg19_v1_chr19_+_32897021 AK126757 AF533710	-269097	+	AK124499 NM_207391	158	+	TSC_hg19_v1_chr19_+_33182761 NM_001105570	16623	+	NM_001110822 BC049000	44525	+	BC050529|ANKRD27|84079|ankyrin repeat domain 27 (VPS9 domain)##AF447882|ANKRD27|84079|ankyrin repeat domain 27 (VPS9 domain)##AL136784|ANKRD27|84079|ankyrin repeat domain 27 (VPS9 domain)##AK054561|ANKRD27|84079|ankyrin repeat domain 27 (VPS9 domain)##BC045605|ANKRD27|84079|ankyrin repeat domain 27 (VPS9 domain)##NM_032139|ANKRD27|84079|ankyrin repeat domain 27 (VPS9 domain)##NM_004708|PDCD5|9141|programmed cell death 5##AK293486|PDCD5|9141|programmed cell death 5##AB209040|PDCD5|9141|programmed cell death 5##BC015519|PDCD5|9141|programmed cell death 5##AF014955|PDCD5|9141|programmed cell death 5##DQ208400|PDCD5|9141|programmed cell death 5##DQ893577|PDCD5|9141|programmed cell death 5##DQ894611|PDCD5|9141|programmed cell death 5##BT006694|PDCD5|9141|programmed cell death 5##CR456934|PDCD5|9141|programmed cell death 5##NM_207325|DPY19L3|147991|dpy-19-like 3 (C. elegans)##AK126757|DPY19L3|147991|dpy-19-like 3 (C. elegans)##AF533710|DPY19L3|147991|dpy-19-like 3 (C. elegans)##AK124499|RGS9BP|388531|regulator of G protein signaling 9 binding protein##NM_207391|RGS9BP|388531|regulator of G protein signaling 9 binding protein##NM_001105570|NUDT19|390916|nudix (nucleoside diphosphate linked moiety X)-type motif 19##NM_001110822|TDRD12|91646|tudor domain containing 12##BC049000|TDRD12|91646|tudor domain containing 12	0.212415	denovo_WM_21:-14:0.212
chr1	25757192	25757332	reg1000237.p2	10.397	+	AB018644 AB018645 AB030388 AB049753 AF056965 AF177938 AM295498 AM295506 DQ178642 DQ266353 DQ266400 DQ322275 FR691748 FR691750 GU474431 GU563377 GU810838 HE572747 JF436968 S57967 X63096 X63095 AY603478 X63098 Z97026 BC075081 M34015 AF510065 AF510066 AF510067 AF510068 X54534 NM_020485 NM_138616 NM_138617 NM_138618 BC139905	-9922	-	TSC_hg19_v1_chr1_+_25664821 NM_014313 AK311092 AF087880 AL136627 AK299180 AK311355 AK312588 AY358650 AY071927 BC007341 BC066908 AF081282	-92428	+	AK297151 NM_001127691 NM_016124 X63094 BC139922 AF510069 AF510070 AF312679 Z97026 DQ451878 X63097 AB018966 AB018967 AB018968 AB018969 AB037270 AB046420 AB049754 AF037626 AF177938 AF187846 AJ704215 AM183924 AY449381 AY449382 AY449383 AY449384 AY449385 AY751491 AY751492 AY751493 AY751494 AY751495 AY751496 FR745438 FR745439 FR745440 FR745441 JF436967 L08429 S57971 S70174 S73913 S78509 S82449 EU557240 EU557241 EU661905 EU661906	-158270	+	TSC_hg19_v1_chr1_+_25757387 AK311472 NM_018202 AY845015 BC007687 AK001609 AY845035 AY845036 BC032427 BC020801	223	+	TSC_hg19_v1_chr1_+_25870097 AK091219 NM_015627	112829	+	TSC_hg19_v1_chr1_+_25870146 BC029770 AL117654 AB528624	112902	+	AB018644|RHCE|6006|Rh blood group, CcEe antigens##AB018645|RHCE|6006|Rh blood group, CcEe antigens##AB030388|RHCE|6006|Rh blood group, CcEe antigens##AB049753|RHCE|6006|Rh blood group, CcEe antigens##AF056965|RHCE|6006|Rh blood group, CcEe antigens##AF177938|RHD|6007|Rh blood group, D antigen##AM295498|RHCE|6006|Rh blood group, CcEe antigens##AM295506|RHCE|6006|Rh blood group, CcEe antigens##DQ178642|RHCE|6006|Rh blood group, CcEe antigens##DQ266353|RHCE|6006|Rh blood group, CcEe antigens##DQ266400|RHCE|6006|Rh blood group, CcEe antigens##DQ322275|RHCE|6006|Rh blood group, CcEe antigens##FR691748|RHCE|6006|Rh blood group, CcEe antigens##FR691750|RHCE|6006|Rh blood group, CcEe antigens##GU474431|RHCE|6006|Rh blood group, CcEe antigens##GU563377|RHCE|6006|Rh blood group, CcEe antigens##GU810838|RHCE|6006|Rh blood group, CcEe antigens##S57967|RHCE|6006|Rh blood group, CcEe antigens##X63096|RHCE|6006|Rh blood group, CcEe antigens##X63095|RHCE|6006|Rh blood group, CcEe antigens##AY603478|RHCE|6006|Rh blood group, CcEe antigens##X63098|RHCE|6006|Rh blood group, CcEe antigens##Z97026|RHD|6007|Rh blood group, D antigen##BC075081|RHCE|6006|Rh blood group, CcEe antigens##M34015|RHCE|6006|Rh blood group, CcEe antigens##AF510065|RHCE|6006|Rh blood group, CcEe antigens##AF510066|RHCE|6006|Rh blood group, CcEe antigens##AF510067|RHCE|6006|Rh blood group, CcEe antigens##AF510068|RHCE|6006|Rh blood group, CcEe antigens##X54534|RHCE|6006|Rh blood group, CcEe antigens##NM_020485|RHCE|6006|Rh blood group, CcEe antigens##NM_138616|RHCE|6006|Rh blood group, CcEe antigens##NM_138617|RHCE|6006|Rh blood group, CcEe antigens##NM_138618|RHCE|6006|Rh blood group, CcEe antigens##BC139905|RHCE|6006|Rh blood group, CcEe antigens##NM_014313|TMEM50A|23585|transmembrane protein 50A##AK311092|TMEM50A|23585|transmembrane protein 50A##AF087880|TMEM50A|23585|transmembrane protein 50A##AL136627|TMEM50A|23585|transmembrane protein 50A##AK299180|TMEM50A|23585|transmembrane protein 50A##AK311355|TMEM50A|23585|transmembrane protein 50A##AK312588|TMEM50A|23585|transmembrane protein 50A##AY358650|TMEM50A|23585|transmembrane protein 50A##AY071927|TMEM50A|23585|transmembrane protein 50A##BC007341|TMEM50A|23585|transmembrane protein 50A##BC066908|TMEM50A|23585|transmembrane protein 50A##AF081282|TMEM50A|23585|transmembrane protein 50A##AK297151|RHD|6007|Rh blood group, D antigen##NM_001127691|RHD|6007|Rh blood group, D antigen##NM_016124|RHD|6007|Rh blood group, D antigen##X63094|RHD|6007|Rh blood group, D antigen##BC139922|RHD|6007|Rh blood group, D antigen##AF510069|RHD|6007|Rh blood group, D antigen##AF510070|RHD|6007|Rh blood group, D antigen##AF312679|RHD|6007|Rh blood group, D antigen##Z97026|RHD|6007|Rh blood group, D antigen##DQ451878|RHD|6007|Rh blood group, D antigen##X63097|RHD|6007|Rh blood group, D antigen##AB018966|RHD|6007|Rh blood group, D antigen##AB018967|RHD|6007|Rh blood group, D antigen##AB018968|RHD|6007|Rh blood group, D antigen##AB018969|RHD|6007|Rh blood group, D antigen##AB037270|RHD|6007|Rh blood group, D antigen##AB046420|RHD|6007|Rh blood group, D antigen##AB049754|RHD|6007|Rh blood group, D antigen##AF037626|RHD|6007|Rh blood group, D antigen##AF177938|RHD|6007|Rh blood group, D antigen##AF187846|RHD|6007|Rh blood group, D antigen##AJ704215|RHD|6007|Rh blood group, D antigen##AM183924|RHD|6007|Rh blood group, D antigen##AY449381|RHD|6007|Rh blood group, D antigen##AY449382|RHD|6007|Rh blood group, D antigen##AY449383|RHD|6007|Rh blood group, D antigen##AY449384|RHD|6007|Rh blood group, D antigen##AY449385|RHD|6007|Rh blood group, D antigen##AY751491|RHD|6007|Rh blood group, D antigen##AY751492|RHD|6007|Rh blood group, D antigen##AY751493|RHD|6007|Rh blood group, D antigen##AY751494|RHD|6007|Rh blood group, D antigen##AY751495|RHD|6007|Rh blood group, D antigen##AY751496|RHD|6007|Rh blood group, D antigen##FR745438|RHD|6007|Rh blood group, D antigen##FR745439|RHD|6007|Rh blood group, D antigen##FR745440|RHD|6007|Rh blood group, D antigen##FR745441|RHD|6007|Rh blood group, D antigen##L08429|RHD|6007|Rh blood group, D antigen##S57971|RHD|6007|Rh blood group, D antigen##S70174|RHD|6007|Rh blood group, D antigen##S73913|RHD|6007|Rh blood group, D antigen##S78509|RHD|6007|Rh blood group, D antigen##S82449|RHD|6007|Rh blood group, D antigen##EU557240|RHD|6007|Rh blood group, D antigen##EU557241|RHD|6007|Rh blood group, D antigen##EU661905|RHD|6007|Rh blood group, D antigen##EU661906|RHD|6007|Rh blood group, D antigen##AK311472|TMEM57|55219|transmembrane protein 57##NM_018202|TMEM57|55219|transmembrane protein 57##AY845015|TMEM57|55219|transmembrane protein 57##BC007687|TMEM57|55219|transmembrane protein 57##AK001609|TMEM57|55219|transmembrane protein 57##AY845035|TMEM57|55219|transmembrane protein 57##AY845036|TMEM57|55219|transmembrane protein 57##BC032427|TMEM57|55219|transmembrane protein 57##BC020801|TMEM57|55219|transmembrane protein 57##AK091219|LDLRAP1|26119|low density lipoprotein receptor adaptor protein 1##NM_015627|LDLRAP1|26119|low density lipoprotein receptor adaptor protein 1##BC029770|LDLRAP1|26119|low density lipoprotein receptor adaptor protein 1##AL117654|LDLRAP1|26119|low density lipoprotein receptor adaptor protein 1	1.083744	denovo_WM_21:46:0.742	denovo_WM_21:-85:0.217
chr1	150459750	150459887	reg1000326.p1	10.394	+	TSC_hg19_v1_chr1_+_150337184 AK291703 AK304380 AK056707 AK308148 AF161362 BC045623 AB007929 EU832460 EU832492 EU832542 EU832573 AB527168	-122596	+	NM_015203 TSC_hg19_v1_chr1_+_150337109	-122762	+	TSC_hg19_v1_chr1_+_150336622 BX641025	-123173	+	TSC_hg19_v1_chr1_+_150459910 AK298773 AK022590 BC000541 AK315507 AK222814 AY450558	74	+	TSC_hg19_v1_chr1_+_150459916 AK225368 BC009997 NM_025150 AB384782 BC007824	114	+	NM_001202858 NM_004425 NM_022664 TSC_hg19_v1_chr1_+_150480582 AK097205 AK097046 BC023505 DQ010946 DQ112074 U68186 U68187	20716	+	AK291703|RPRD2|23248|regulation of nuclear pre-mRNA domain containing 2##AK304380|RPRD2|23248|regulation of nuclear pre-mRNA domain containing 2##AK056707|RPRD2|23248|regulation of nuclear pre-mRNA domain containing 2##AK308148|RPRD2|23248|regulation of nuclear pre-mRNA domain containing 2##AF161362|RPRD2|23248|regulation of nuclear pre-mRNA domain containing 2##BC045623|RPRD2|23248|regulation of nuclear pre-mRNA domain containing 2##AB007929|RPRD2|23248|regulation of nuclear pre-mRNA domain containing 2##EU832460|RPRD2|23248|regulation of nuclear pre-mRNA domain containing 2##EU832492|RPRD2|23248|regulation of nuclear pre-mRNA domain containing 2##EU832542|RPRD2|23248|regulation of nuclear pre-mRNA domain containing 2##EU832573|RPRD2|23248|regulation of nuclear pre-mRNA domain containing 2##NM_015203|RPRD2|23248|regulation of nuclear pre-mRNA domain containing 2##BX641025|RPRD2|23248|regulation of nuclear pre-mRNA domain containing 2##AK298773|TARS2|80222|threonyl-tRNA synthetase 2, mitochondrial (putative)##AK022590|TARS2|80222|threonyl-tRNA synthetase 2, mitochondrial (putative)##BC000541|TARS2|80222|threonyl-tRNA synthetase 2, mitochondrial (putative)##AK315507|TARS2|80222|threonyl-tRNA synthetase 2, mitochondrial (putative)##AK222814|TARS2|80222|threonyl-tRNA synthetase 2, mitochondrial (putative)##AY450558|TARS2|80222|threonyl-tRNA synthetase 2, mitochondrial (putative)##AK225368|TARS2|80222|threonyl-tRNA synthetase 2, mitochondrial (putative)##BC009997|TARS2|80222|threonyl-tRNA synthetase 2, mitochondrial (putative)##NM_025150|TARS2|80222|threonyl-tRNA synthetase 2, mitochondrial (putative)##BC007824|TARS2|80222|threonyl-tRNA synthetase 2, mitochondrial (putative)##NM_001202858|ECM1|1893|extracellular matrix protein 1##NM_004425|ECM1|1893|extracellular matrix protein 1##NM_022664|ECM1|1893|extracellular matrix protein 1##AK097205|ECM1|1893|extracellular matrix protein 1##AK097046|ECM1|1893|extracellular matrix protein 1##BC023505|ECM1|1893|extracellular matrix protein 1##U68186|ECM1|1893|extracellular matrix protein 1##U68187|ECM1|1893|extracellular matrix protein 1	0.946341	denovo_WM_21:10:0.349	denovo_WM_21:41:0.598
chr19	39881801	39881969	reg1000292.p2	10.389	+	AK098423 AJ401156 BC000017 NM_019088 TSC_hg19_v1_chr19_-_39881747 AK001985 BC013402 AK294625	-191	-	CU673992 DQ891839 DQ895026 TSC_hg19_v1_chr19_-_39881519	-358	-	TSC_hg19_v1_chr19_+_39833151 BC080641	-48727	+	AK300563 TSC_hg19_v1_chr19_+_39882017 AY729650 NM_017592 AB528726	98	+	TSC_hg19_v1_chr19_+_39882046 AL137304 AK000411 AK298014 BC019015 AK092909 AX747802 AK124629 AK316010 AK090877 AK297772 AX746660 AK294667	153	+	TSC_hg19_v1_chr19_+_39897486 AK314042 M92843 NM_003407 BC009693 M63625 EU446714 EU832179 EU832272 CU679443	15889	+	AK098423|PAF1|54623|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)##AJ401156|PAF1|54623|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)##BC000017|PAF1|54623|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)##NM_019088|PAF1|54623|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)##AK001985|PAF1|54623|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)##BC013402|PAF1|54623|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)##AK294625|PAF1|54623|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)##DQ891839|PAF1|54623|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)##DQ895026|PAF1|54623|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)##BC080641|SAMD4B|55095|sterile alpha motif domain containing 4B##AK300563|MED29|55588|mediator complex subunit 29##AY729650|MED29|55588|mediator complex subunit 29##NM_017592|MED29|55588|mediator complex subunit 29##AL137304|MED29|55588|mediator complex subunit 29##AK000411|MED29|55588|mediator complex subunit 29##AK298014|MED29|55588|mediator complex subunit 29##BC019015|MED29|55588|mediator complex subunit 29##AK092909|MED29|55588|mediator complex subunit 29##AK124629|MED29|55588|mediator complex subunit 29##AK316010|MED29|55588|mediator complex subunit 29##AK090877|MED29|55588|mediator complex subunit 29##AK297772|MED29|55588|mediator complex subunit 29##AK294667|MED29|55588|mediator complex subunit 29##AK314042|ZFP36|7538|zinc finger protein 36, C3H type, homolog (mouse)##M92843|ZFP36|7538|zinc finger protein 36, C3H type, homolog (mouse)##NM_003407|ZFP36|7538|zinc finger protein 36, C3H type, homolog (mouse)##BC009693|ZFP36|7538|zinc finger protein 36, C3H type, homolog (mouse)##M63625|ZFP36|7538|zinc finger protein 36, C3H type, homolog (mouse)##EU446714|ZFP36|7538|zinc finger protein 36, C3H type, homolog (mouse)##EU832179|ZFP36|7538|zinc finger protein 36, C3H type, homolog (mouse)##EU832272|ZFP36|7538|zinc finger protein 36, C3H type, homolog (mouse)	0.634644	denovo_WM_21:-13:0.212	denovo_WM_21:59:0.423
chr2	44395155	44395298	reg1000082.p1	10.372	+	TSC_hg19_v1_chr2_-_44223145 BC130285 AY289212 NM_133259	-172087	-	BC026034 TSC_hg19_v1_chr2_-_44223116	-172108	-	AK299869 TSC_hg19_v1_chr2_-_44223114 AK125781 AK290016 AK308348	-172113	-	TSC_hg19_v1_chr2_+_44396013 NM_001033556 NM_001033557 NM_002706 NM_177968 NM_177969 AK056009 AK291214 DQ023508 DQ023509 DQ023510 DQ023511 BC064381 AJ271832 AJ271835 BC012002	789	+	TSC_hg19_v1_chr2_+_44396066 AL833035	884	+	NM_000341 BC022386 AK309145 AK313157 AB033549 AK091932 AK289636 L11696 M95548 AK223146 BC093624 BC093626 D82326 CU692594 DQ892031 DQ895222 DQ023513 DQ023515 DQ023516 DQ023517	107409	+	BC130285|LRPPRC|10128|leucine-rich PPR-motif containing##AY289212|LRPPRC|10128|leucine-rich PPR-motif containing##NM_133259|LRPPRC|10128|leucine-rich PPR-motif containing##BC026034|LRPPRC|10128|leucine-rich PPR-motif containing##AK299869|LRPPRC|10128|leucine-rich PPR-motif containing##AK125781|LRPPRC|10128|leucine-rich PPR-motif containing##AK290016|LRPPRC|10128|leucine-rich PPR-motif containing##AK308348|LRPPRC|10128|leucine-rich PPR-motif containing##NM_001033556|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_001033557|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_002706|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_177968|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_177969|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AK056009|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AK291214|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023508|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023509|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023510|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023511|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC064381|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AJ271832|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AJ271835|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC012002|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AL833035|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_000341|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC022386|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK309145|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK313157|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AB033549|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK091932|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK289636|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##L11696|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##M95548|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK223146|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC093624|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC093626|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ892031|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ895222|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023513|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023515|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023516|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023517|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1	0.95687	denovo_WM_21:11:0.862
chr2	240322973	240323108	reg1000194.p2	10.353	+	TSC_hg19_v1_chr2_-_240322695 BC039904	-342	-	TSC_hg19_v1_chr2_-_240322657 AB006626 NM_006037	-392	-	BC033168 NM_057179 BC103755 BC017907 AB528459 CU689614	-566277	+	TSC_hg19_v1_chr2_-_240323341 AK308791	308	-	AF453834 TSC_hg19_v1_chr2_-_240964750 CU678462 DQ891011 DQ894191 BC031332 AF087661 AB209440 AK290778 BC003417 AF087854	641721	-	TSC_hg19_v1_chr2_-_240964807 NM_004544	641772	-	BC039904|HDAC4|9759|histone deacetylase 4##AB006626|HDAC4|9759|histone deacetylase 4##NM_006037|HDAC4|9759|histone deacetylase 4##BC033168|TWIST2|117581|twist homolog 2 (Drosophila)##NM_057179|TWIST2|117581|twist homolog 2 (Drosophila)##BC103755|TWIST2|117581|twist homolog 2 (Drosophila)##BC017907|TWIST2|117581|twist homolog 2 (Drosophila)##AK308791|HDAC4|9759|histone deacetylase 4##AF453834|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##DQ891011|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##DQ894191|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##BC031332|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AF087661|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AB209440|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AK290778|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##BC003417|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AF087854|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##NM_004544|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa	0.445267	denovo_WM_21:15:0.445
chr22	36784108	36784234	reg1000104.p1	10.339	+	TSC_hg19_v1_chr22_-_36784062 NM_002473	-113	-	TSC_hg19_v1_chr22_-_36784013 AK304840 AK291609 AB191263	-163	-	AK131080 TSC_hg19_v1_chr22_-_36783982 BC049849	-192	-	TSC_hg19_v1_chr22_-_36877665 BC013726 BC050610 AF480262 NM_012473 CR456601	93508	-	TSC_hg19_v1_chr22_-_36903081 BC027716 BC015726	118887	-	AK025714 AK225347 TSC_hg19_v1_chr22_-_36903088 AK315555 NM_024955 BC040351 NM_001102371	118946	-	NM_002473|MYH9|4627|myosin, heavy chain 9, non-muscle##AK304840|MYH9|4627|myosin, heavy chain 9, non-muscle##AK291609|MYH9|4627|myosin, heavy chain 9, non-muscle##AB191263|MYH9|4627|myosin, heavy chain 9, non-muscle##AK131080|MYH9|4627|myosin, heavy chain 9, non-muscle##BC049849|MYH9|4627|myosin, heavy chain 9, non-muscle##BC013726|TXN2|25828|thioredoxin 2##BC050610|TXN2|25828|thioredoxin 2##AF480262|TXN2|25828|thioredoxin 2##NM_012473|TXN2|25828|thioredoxin 2##CR456601|TXN2|25828|thioredoxin 2##BC027716|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##BC015726|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##AK025714|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##AK225347|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##AK315555|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##NM_024955|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##BC040351|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##NM_001102371|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2	0.0	
chr20	44509714	44509849	reg1000249.p1	10.338	+	NM_080752 AK056641 AK302767 AK316214 BC027611	-23541	+	AF124264 CR541771 CR541778 HQ258192 BC117155 BC117157 TSC_hg19_v1_chr20_-_44486011 AF014404 AK056668 AK298783 AK292494 X86032 AK296973 NM_005469	-23772	-	TSC_hg19_v1_chr20_+_44462788 AK297622 AK095851	-46961	+	NM_080603 TSC_hg19_v1_chr20_+_44509872 AK291304 AK026450 BC001672 BC080525	82	+	BC039607 NM_080608	6456	-	AK172808 TSC_hg19_v1_chr20_+_44518912	9066	+	NM_080752|ZSWIM3|140831|zinc finger, SWIM-type containing 3##AK056641|ZSWIM3|140831|zinc finger, SWIM-type containing 3##AK302767|ZSWIM3|140831|zinc finger, SWIM-type containing 3##AK316214|ZSWIM3|140831|zinc finger, SWIM-type containing 3##BC027611|ZSWIM3|140831|zinc finger, SWIM-type containing 3##AF124264|ACOT8|10005|acyl-CoA thioesterase 8##CR541771|ACOT8|10005|acyl-CoA thioesterase 8##CR541778|ACOT8|10005|acyl-CoA thioesterase 8##HQ258192|ACOT8|10005|acyl-CoA thioesterase 8##BC117155|ACOT8|10005|acyl-CoA thioesterase 8##BC117157|ACOT8|10005|acyl-CoA thioesterase 8##AF014404|ACOT8|10005|acyl-CoA thioesterase 8##AK056668|ACOT8|10005|acyl-CoA thioesterase 8##AK298783|ACOT8|10005|acyl-CoA thioesterase 8##AK292494|ACOT8|10005|acyl-CoA thioesterase 8##X86032|ACOT8|10005|acyl-CoA thioesterase 8##AK296973|ACOT8|10005|acyl-CoA thioesterase 8##NM_005469|ACOT8|10005|acyl-CoA thioesterase 8##AK297622|SNX21|90203|sorting nexin family member 21##AK095851|SNX21|90203|sorting nexin family member 21##NM_080603|ZSWIM1|90204|zinc finger, SWIM-type containing 1##AK291304|ZSWIM1|90204|zinc finger, SWIM-type containing 1##BC001672|ZSWIM1|90204|zinc finger, SWIM-type containing 1##BC080525|ZSWIM1|90204|zinc finger, SWIM-type containing 1##BC039607|SPATA25|128497|spermatogenesis associated 25##NM_080608|SPATA25|128497|spermatogenesis associated 25##AK172808|CTSA|5476|cathepsin A	0.284104	denovo_WM_21:-30:0.284
chr1	36023241	36023377	reg1000303.p1	10.337	+	TSC_hg19_v1_chr1_-_36023005 NM_024874	-278	-	AK316252 TSC_hg19_v1_chr1_-_36023002	-306	-	TSC_hg19_v1_chr1_-_36022989 BC014530 AF275679 AK314605 AY163234	-340	-	TSC_hg19_v1_chr1_+_36023399 NM_001014839 NM_001014841 NM_014284 AB018739 AB018740 BC024592 AB011179	118	+	AY326454 BC041175 NM_178548	15661	+	AK310023 NM_001199780	73828	-	NM_024874|KIAA0319L|79932|KIAA0319-like##AK316252|KIAA0319L|79932|KIAA0319-like##BC014530|KIAA0319L|79932|KIAA0319-like##AF275679|KIAA0319L|79932|KIAA0319-like##AK314605|KIAA0319L|79932|KIAA0319-like##AY163234|KIAA0319L|79932|KIAA0319-like##NM_001014839|NCDN|23154|neurochondrin##NM_001014841|NCDN|23154|neurochondrin##NM_014284|NCDN|23154|neurochondrin##AB018739|NCDN|23154|neurochondrin##AB018740|NCDN|23154|neurochondrin##BC024592|NCDN|23154|neurochondrin##AB011179|NCDN|23154|neurochondrin##AY326454|TFAP2E|339488|transcription factor AP-2 epsilon (activating enhancer binding protein 2 epsilon)##BC041175|TFAP2E|339488|transcription factor AP-2 epsilon (activating enhancer binding protein 2 epsilon)##NM_178548|TFAP2E|339488|transcription factor AP-2 epsilon (activating enhancer binding protein 2 epsilon)##AK310023|PSMB2|5690|proteasome (prosome, macropain) subunit, beta type, 2##NM_001199780|PSMB2|5690|proteasome (prosome, macropain) subunit, beta type, 2	0.647175	denovo_WM_21:4:0.647
chr1	150208555	150208685	reg1000235.p2	10.311	+	TSC_hg19_v1_chr1_-_150208505 AL832674 NM_001136478 NM_030920	-128	-	AY057381 TSC_hg19_v1_chr1_-_150208461 AK092672 AX747663	-169	-	AB528764 AM393076 AL833660 TSC_hg19_v1_chr1_-_150208332 AK303333 BC003380 AL832664 AK303392 AK223469	-353	-	AK074765 AK315469 AB025904 NM_012113 AK308964 AY358689 AK295341 BC034412 AK290609	21613	+	CU676022 AF508787 AY113698 AY113699 AF151835 AK075295 AX775955 BC017699 TSC_hg19_v1_chr1_-_150241368 BC008732 BC001230 BC015568 AK297680 AK298876 AK027879 AK314490 AX775957 BC020590 BC009501	32684	-	TSC_hg19_v1_chr1_-_150241417 AY358951 AK300640 AK075452 AK298832 AK307358 NM_001077628 NM_001243771 NM_001243772 NM_016022	32888	-	AL832674|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##NM_001136478|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##NM_030920|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AY057381|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK092672|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AM393076|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AL833660|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK303333|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##BC003380|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AL832664|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK303392|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK223469|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK074765|CA14|23632|carbonic anhydrase XIV##AK315469|CA14|23632|carbonic anhydrase XIV##AB025904|CA14|23632|carbonic anhydrase XIV##NM_012113|CA14|23632|carbonic anhydrase XIV##AY358689|CA14|23632|carbonic anhydrase XIV##AK295341|CA14|23632|carbonic anhydrase XIV##BC034412|CA14|23632|carbonic anhydrase XIV##AK290609|CA14|23632|carbonic anhydrase XIV##AF508787|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AY113698|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AY113699|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AF151835|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AK075295|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AX775955|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##BC017699|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##BC008732|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##BC001230|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##BC015568|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AK297680|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AK298876|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AK027879|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AK314490|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AX775957|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##BC020590|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##BC009501|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AY358951|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AK300640|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AK075452|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AK298832|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AK307358|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##NM_001077628|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##NM_001243771|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##NM_001243772|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##NM_016022|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)	0.572601	denovo_WM_21:-5:0.557
chr3	37034854	37034985	reg1000257.p2	10.294	+	NM_000249 TSC_hg19_v1_chr3_+_37034977	-10	+	TSC_hg19_v1_chr3_-_37034623 BC064696 AF059751 BC012624 AB018309 AY178832 NM_014805	-218	-	AB385383 CU687938 TSC_hg19_v1_chr3_-_37034574	-348	-	TSC_hg19_v1_chr3_+_37035008 BC006850 U07418 DQ648888 U07343 AK316264 AK312609 AK222810 AB527828 EU176254 EU176562 AY517558 AK311326 AB209848	104	+	BX648844 NM_001167617 NM_001167618 NM_001167619 AK295359 AK298583 AK316074 AK298324 AK311365 AK302807	383	+	TSC_hg19_v1_chr3_-_37217813 BC017703 BC053668 AK291514 NM_001134369 NM_006309 NM_017724	182868	-	NM_000249|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##BC064696|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##AF059751|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##BC012624|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##AB018309|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##AY178832|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##NM_014805|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##BC006850|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##U07418|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##DQ648888|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##U07343|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK316264|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK312609|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK222810|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##EU176254|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##EU176562|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AY517558|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK311326|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AB209848|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##BX648844|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##NM_001167617|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##NM_001167618|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##NM_001167619|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK295359|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK298583|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK316074|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK298324|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK311365|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK302807|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##BC053668|LRRFIP2|9209|leucine rich repeat (in FLII) interacting protein 2##AK291514|LRRFIP2|9209|leucine rich repeat (in FLII) interacting protein 2##NM_001134369|LRRFIP2|9209|leucine rich repeat (in FLII) interacting protein 2##NM_006309|LRRFIP2|9209|leucine rich repeat (in FLII) interacting protein 2##NM_017724|LRRFIP2|9209|leucine rich repeat (in FLII) interacting protein 2	0.355838	denovo_WM_21:60:0.219
chr12	54753026	54753134	reg1000256.p1	10.287	+	TSC_hg19_v1_chr12_+_54718927 AK223188 BC002849 AB463530 CU678240	-34143	+	TSC_hg19_v1_chr12_+_54718925 AB047848 AF086911	-34155	+	TSC_hg19_v1_chr12_+_54718922 AK293377 AK295325	-34160	+	AF237762 AF282693 TSC_hg19_v1_chr12_-_54758271 BC020614 NM_020370 AK290394	5170	-	AB528580 CR457327 TSC_hg19_v1_chr12_-_54778374	25256	-	AK296564 TSC_hg19_v1_chr12_-_54778485 AF304052 NM_015481	25394	-	AK223188|COPZ1|22818|coatomer protein complex, subunit zeta 1##BC002849|COPZ1|22818|coatomer protein complex, subunit zeta 1##AB047848|COPZ1|22818|coatomer protein complex, subunit zeta 1##AF086911|COPZ1|22818|coatomer protein complex, subunit zeta 1##AK293377|COPZ1|22818|coatomer protein complex, subunit zeta 1##AK295325|COPZ1|22818|coatomer protein complex, subunit zeta 1##AF237762|GPR84|53831|G protein-coupled receptor 84##AF282693|GPR84|53831|G protein-coupled receptor 84##BC020614|GPR84|53831|G protein-coupled receptor 84##NM_020370|GPR84|53831|G protein-coupled receptor 84##AK290394|GPR84|53831|G protein-coupled receptor 84##CR457327|ZNF385A|25946|zinc finger protein 385A##AK296564|ZNF385A|25946|zinc finger protein 385A##AF304052|ZNF385A|25946|zinc finger protein 385A##NM_015481|ZNF385A|25946|zinc finger protein 385A	2.10967	denovo_WM_21:-14:0.988	denovo_WM_21:27:0.879	denovo_WM_21:-55:0.243
chr19	14530186	14530329	reg1000275.p1	10.255	+	TSC_hg19_v1_chr19_-_14530193 U90426 NM_005804	-83	-	TSC_hg19_v1_chr19_-_14530152 BC001009 BC032128 BC010455 AK293911	-117	-	TSC_hg19_v1_chr19_-_14529877 AK301847	-368	-	TSC_hg19_v1_chr19_+_14544161 BC094766 NM_002741 BC040061	13898	+	TSC_hg19_v1_chr19_+_14544325 S75546 U33053 AK313886 DQ892477	14051	+	TSC_hg19_v1_chr19_+_14551079 AK123007	20808	+	U90426|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##NM_005804|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##BC001009|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##BC032128|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##BC010455|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##AK293911|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##AK301847|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##BC094766|PKN1|5585|protein kinase N1##NM_002741|PKN1|5585|protein kinase N1##BC040061|PKN1|5585|protein kinase N1##S75546|PKN1|5585|protein kinase N1##U33053|PKN1|5585|protein kinase N1##AK313886|PKN1|5585|protein kinase N1##DQ892477|PKN1|5585|protein kinase N1##AK123007|PKN1|5585|protein kinase N1	0.440663	denovo_WM_21:64:0.428
chr14	73925435	73925559	reg1000063.p2	10.235	+	TSC_hg19_v1_chr14_-_73925284 BC068476 NM_001005743 NM_001005744 NM_001005745 NM_003744	-206	-	TSC_hg19_v1_chr14_-_73925274 BX248781	-230	-	BX248775 TSC_hg19_v1_chr14_-_73925232 BX647137 AF171938 AF171939 AF171940 AF171941 BX248073 AF015040 AK315130 BC020788	-265	-	TSC_hg19_v1_chr14_+_73957638 NM_024644	32128	+	TSC_hg19_v1_chr14_+_73957669 AK299994 AK025455 BC011350	32166	+	TSC_hg19_v1_chr14_+_73957674 AY390535	32176	+	BC068476|NUMB|8650|numb homolog (Drosophila)##NM_001005743|NUMB|8650|numb homolog (Drosophila)##NM_001005744|NUMB|8650|numb homolog (Drosophila)##NM_001005745|NUMB|8650|numb homolog (Drosophila)##NM_003744|NUMB|8650|numb homolog (Drosophila)##BX248781|NUMB|8650|numb homolog (Drosophila)##BX248775|NUMB|8650|numb homolog (Drosophila)##BX647137|NUMB|8650|numb homolog (Drosophila)##AF171938|NUMB|8650|numb homolog (Drosophila)##AF171939|NUMB|8650|numb homolog (Drosophila)##AF171940|NUMB|8650|numb homolog (Drosophila)##AF171941|NUMB|8650|numb homolog (Drosophila)##BX248073|NUMB|8650|numb homolog (Drosophila)##AF015040|NUMB|8650|numb homolog (Drosophila)##AK315130|NUMB|8650|numb homolog (Drosophila)##BC020788|NUMB|8650|numb homolog (Drosophila)##NM_024644|C14orf169|79697|chromosome 14 open reading frame 169##AK299994|C14orf169|79697|chromosome 14 open reading frame 169##AK025455|C14orf169|79697|chromosome 14 open reading frame 169##BC011350|C14orf169|79697|chromosome 14 open reading frame 169##AY390535|C14orf169|79697|chromosome 14 open reading frame 169	0.232292	denovo_WM_21:-36:0.232
chr17	46970001	46970149	reg1000221.p2	10.229	+	NM_005831 AK293329 TSC_hg19_v1_chr17_+_46908406 AK293137 AK303313 AK304024 AK310648 AK314796 U22897 AK222666 AK223227 AK298177 BC004130	-61685	+	AK097392 AK302952 BC041368 AL834151 NM_001130918	-75651	-	CU689652 BC033563 NM_173623 AK310321	-98430	-	AK095669 TSC_hg19_v1_chr17_+_46970178 NM_001002027 NM_005175 AL080089 AK311848 D13118	110	+	TSC_hg19_v1_chr17_+_46985768 NM_023079 AK296865	15670	+	AK130303 TSC_hg19_v1_chr17_+_46985840 AK024030 AK122770	15759	+	NM_005831|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK293329|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK293137|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK303313|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK304024|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK314796|CALCOCO2|10241|calcium binding and coiled-coil domain 2##U22897|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK222666|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK223227|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK298177|CALCOCO2|10241|calcium binding and coiled-coil domain 2##BC004130|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK097392|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AK302952|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##BC041368|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AL834151|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##NM_001130918|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##BC033563|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##NM_173623|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AK310321|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AK095669|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##NM_001002027|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##NM_005175|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##AL080089|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##AK311848|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##D13118|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##NM_023079|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK296865|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK130303|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK024030|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK122770|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z	3.000727	denovo_WM_21:0:0.987	denovo_WM_21:29:0.692	denovo_WM_21:55:0.972	denovo_WM_21:-103:0.349
chr2	219134909	219135019	reg1000273.p2	10.191	+	AK131047 TSC_hg19_v1_chr2_-_219134886 NM_001087	-84	-	TSC_hg19_v1_chr2_-_219134861 BC039866 CR456755 M95627	-110	-	BC020244 AB209790 BC014122 TSC_hg19_v1_chr2_-_219134838 AK225078	-147	-	AF318057 AF417001 NM_001077399 NM_015488 AK289867 TSC_hg19_v1_chr2_+_219135241 BC036457 AY039043 BC021118 AL080092 CU676836 EU831585 EU831670 AB033010	229	+	TSC_hg19_v1_chr2_-_219157237 AF193045 BC007980 AK095270 AK300597 AK298123 BC026348 AK130713 AK298500 BC026693 AK130380 BC013428 NM_022152	22291	-	TSC_hg19_v1_chr2_+_219187970 NM_022572	52951	+	AK131047|AAMP|14|angio-associated, migratory cell protein##NM_001087|AAMP|14|angio-associated, migratory cell protein##BC039866|AAMP|14|angio-associated, migratory cell protein##CR456755|AAMP|14|angio-associated, migratory cell protein##M95627|AAMP|14|angio-associated, migratory cell protein##BC020244|AAMP|14|angio-associated, migratory cell protein##AB209790|AAMP|14|angio-associated, migratory cell protein##BC014122|AAMP|14|angio-associated, migratory cell protein##AK225078|AAMP|14|angio-associated, migratory cell protein##AF318057|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AF417001|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##NM_001077399|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##NM_015488|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AK289867|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##BC036457|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AY039043|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##BC021118|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AL080092|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##EU831585|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##EU831670|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AB033010|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AF193045|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##BC007980|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##AK300597|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##AK298123|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##BC026348|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##AK130713|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##AK298500|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##BC026693|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##AK130380|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##BC013428|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##NM_022152|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##NM_022572|PNKD|25953|paroxysmal nonkinesigenic dyskinesia	0.283878	denovo_WM_21:24:0.212
chr19	54640770	54640954	reg1000017.p1	10.190	+	TSC_hg19_v1_chr19_+_54619150 AK098547 AL050369 AB593024	-21683	+	TSC_hg19_v1_chr19_+_54619133 AK301709 AB593025	-21732	+	AK310647 AF052052 AK310627 NM_013342	-21823	-	TSC_hg19_v1_chr19_+_54641468 NM_014516	585	+	TSC_hg19_v1_chr19_+_54641477 BC016474 AK300434 AK160386	655	+	DQ892220 DQ895417 DQ895418 TSC_hg19_v1_chr19_-_54663482 BC014986 NM_024316	22596	-	AK098547|PRPF31|26121|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)##AL050369|PRPF31|26121|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)##AB593024|PRPF31|26121|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)##AK301709|PRPF31|26121|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)##AB593025|PRPF31|26121|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)##AK310647|TFPT|29844|TCF3 (E2A) fusion partner (in childhood Leukemia)##AF052052|TFPT|29844|TCF3 (E2A) fusion partner (in childhood Leukemia)##AK310627|TFPT|29844|TCF3 (E2A) fusion partner (in childhood Leukemia)##NM_013342|TFPT|29844|TCF3 (E2A) fusion partner (in childhood Leukemia)##NM_014516|CNOT3|4849|CCR4-NOT transcription complex, subunit 3##BC016474|CNOT3|4849|CCR4-NOT transcription complex, subunit 3##AK300434|CNOT3|4849|CCR4-NOT transcription complex, subunit 3##AK160386|CNOT3|4849|CCR4-NOT transcription complex, subunit 3##DQ892220|LENG1|79165|leukocyte receptor cluster (LRC) member 1##DQ895417|LENG1|79165|leukocyte receptor cluster (LRC) member 1##DQ895418|LENG1|79165|leukocyte receptor cluster (LRC) member 1##BC014986|LENG1|79165|leukocyte receptor cluster (LRC) member 1##NM_024316|LENG1|79165|leukocyte receptor cluster (LRC) member 1	0.080939	
chr4	48782435	48782557	reg1000154.p1	10.190	+	TSC_hg19_v1_chr4_-_48782286 BC040987 BC050336 NM_015030	-198	-	TSC_hg19_v1_chr4_-_48782266 AL833444	-227	-	TSC_hg19_v1_chr4_+_48492278 BC136265 AY191416 NM_175619	-290215	+	TSC_hg19_v1_chr4_+_48833104 NM_001079840 NM_001079841 NM_017830 AK297864 AF323665 AF324350 AK000462 BC003409 NM_001079839 NM_001079842 NM_001168254 BC088361	50755	+	TSC_hg19_v1_chr4_-_48908795 CR749310 BC032808 AK298305 NM_001014446 NM_152398	126283	-	AK025164 NM_025087 BC137387 BC137388	205776	+	BC040987|FRYL|285527|FRY-like##BC050336|FRYL|285527|FRY-like##NM_015030|FRYL|285527|FRY-like##AL833444|FRYL|285527|FRY-like##BC136265|ZAR1|326340|zygote arrest 1##AY191416|ZAR1|326340|zygote arrest 1##NM_175619|ZAR1|326340|zygote arrest 1##NM_001079840|OCIAD1|54940|OCIA domain containing 1##NM_001079841|OCIAD1|54940|OCIA domain containing 1##NM_017830|OCIAD1|54940|OCIA domain containing 1##AK297864|OCIAD1|54940|OCIA domain containing 1##AF323665|OCIAD1|54940|OCIA domain containing 1##AF324350|OCIAD1|54940|OCIA domain containing 1##AK000462|OCIAD1|54940|OCIA domain containing 1##BC003409|OCIAD1|54940|OCIA domain containing 1##NM_001079839|OCIAD1|54940|OCIA domain containing 1##NM_001079842|OCIAD1|54940|OCIA domain containing 1##NM_001168254|OCIAD1|54940|OCIA domain containing 1##BC088361|OCIAD1|54940|OCIA domain containing 1##CR749310|OCIAD2|132299|OCIA domain containing 2##BC032808|OCIAD2|132299|OCIA domain containing 2##AK298305|OCIAD2|132299|OCIA domain containing 2##NM_001014446|OCIAD2|132299|OCIA domain containing 2##NM_152398|OCIAD2|132299|OCIA domain containing 2##AK025164|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##NM_025087|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##BC137387|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##BC137388|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)	0.134959	
chr5	150138179	150138336	reg1000269.p1	10.140	+	AK125973 NM_001135644 AK299517	-144	-	AL136933 TSC_hg19_v1_chr5_-_150080619 BC003402 AK001152 NM_018047	-57625	-	AB463237 AM393639 TSC_hg19_v1_chr5_-_150080561 AK297019	-57690	-	CU693212 DQ892339 DQ895544 TSC_hg19_v1_chr5_-_150138580 AF195120 AK000299 AK296787 BC026323 AK025873 AK311693 AK307757 NM_001135643 NM_016221	348	-	AK125286 NM_032947	19250	+	TSC_hg19_v1_chr5_+_150158318 AK027847 BC082259 AF313413 BC009719	20097	+	AK125973|DCTN4|51164|dynactin 4 (p62)##NM_001135644|DCTN4|51164|dynactin 4 (p62)##AK299517|DCTN4|51164|dynactin 4 (p62)##AL136933|RBM22|55696|RNA binding motif protein 22##BC003402|RBM22|55696|RNA binding motif protein 22##AK001152|RBM22|55696|RNA binding motif protein 22##NM_018047|RBM22|55696|RNA binding motif protein 22##AM393639|RBM22|55696|RNA binding motif protein 22##AK297019|RBM22|55696|RNA binding motif protein 22##DQ892339|DCTN4|51164|dynactin 4 (p62)##DQ895544|DCTN4|51164|dynactin 4 (p62)##AF195120|DCTN4|51164|dynactin 4 (p62)##AK000299|DCTN4|51164|dynactin 4 (p62)##AK296787|DCTN4|51164|dynactin 4 (p62)##BC026323|DCTN4|51164|dynactin 4 (p62)##AK311693|DCTN4|51164|dynactin 4 (p62)##AK307757|DCTN4|51164|dynactin 4 (p62)##NM_001135643|DCTN4|51164|dynactin 4 (p62)##NM_016221|DCTN4|51164|dynactin 4 (p62)##AK125286|C5orf62|85027|chromosome 5 open reading frame 62##NM_032947|C5orf62|85027|chromosome 5 open reading frame 62##AK027847|C5orf62|85027|chromosome 5 open reading frame 62##AF313413|C5orf62|85027|chromosome 5 open reading frame 62##BC009719|C5orf62|85027|chromosome 5 open reading frame 62	1.757058	denovo_WM_21:61:0.798	denovo_WM_21:-62:0.959
chr1	85527875	85528006	reg1000289.p1	10.137	+	TSC_hg19_v1_chr1_-_85514184 BX647497 AK314354 NM_001253693 NM_018298	-13742	-	AF475085 AK001868 BC060765 TSC_hg19_v1_chr1_-_85514153 AK292206	-13795	-	BC104891 BC104893 TSC_hg19_v1_chr1_-_85462793 AK094010 AK309858 AX748410 NM_153259	-65232	-	NM_145172 AY049724 AK292603 AK054629 BC040265	69	+	NM_032184 TSC_hg19_v1_chr1_-_85666752	138800	-	AF387611 AF387612 AY486331 AY486332 BC029538 TSC_hg19_v1_chr1_-_85725338 AK126929 NM_198077	197399	-	BX647497|MCOLN3|55283|mucolipin 3##AK314354|MCOLN3|55283|mucolipin 3##NM_001253693|MCOLN3|55283|mucolipin 3##NM_018298|MCOLN3|55283|mucolipin 3##AF475085|MCOLN3|55283|mucolipin 3##AK001868|MCOLN3|55283|mucolipin 3##BC060765|MCOLN3|55283|mucolipin 3##AK292206|MCOLN3|55283|mucolipin 3##BC104891|MCOLN2|255231|mucolipin 2##BC104893|MCOLN2|255231|mucolipin 2##AK094010|MCOLN2|255231|mucolipin 2##AK309858|MCOLN2|255231|mucolipin 2##NM_153259|MCOLN2|255231|mucolipin 2##NM_145172|WDR63|126820|WD repeat domain 63##AY049724|WDR63|126820|WD repeat domain 63##AK292603|WDR63|126820|WD repeat domain 63##AK054629|WDR63|126820|WD repeat domain 63##BC040265|WDR63|126820|WD repeat domain 63##NM_032184|SYDE2|84144|synapse defective 1, Rho GTPase, homolog 2 (C. elegans)##AF387611|C1orf52|148423|chromosome 1 open reading frame 52##AF387612|C1orf52|148423|chromosome 1 open reading frame 52##AY486331|C1orf52|148423|chromosome 1 open reading frame 52##AY486332|C1orf52|148423|chromosome 1 open reading frame 52##BC029538|C1orf52|148423|chromosome 1 open reading frame 52##AK126929|C1orf52|148423|chromosome 1 open reading frame 52##NM_198077|C1orf52|148423|chromosome 1 open reading frame 52	0.914989	denovo_WM_21:-31:0.915
chr19	14228727	14228833	reg1000038.p2	10.137	+	TSC_hg19_v1_chr19_-_14228563 AK290147	-211	-	AB528630 X07767 TSC_hg19_v1_chr19_-_14228549 BC039846 BC108259 NM_002730	-320	-	TSC_hg19_v1_chr19_-_14224999 AF208004 AF224718 NM_207518 AK292284 AF239744	-3726	-	AB104486 AB463417 CR457235 GQ129346 GQ129347 AF279307 BC007726 BC010014 BC002518 TSC_hg19_v1_chr19_-_14247395 AK223080 AK001288	18552	-	AK302134 TSC_hg19_v1_chr19_-_14247402 BC036521 AK001466 NM_018154	18642	-	TSC_hg19_v1_chr19_+_14247979 BX537706	19211	+	AK290147|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##X07767|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##BC039846|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##BC108259|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##NM_002730|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AF208004|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AF224718|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##NM_207518|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AK292284|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AF239744|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AB104486|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##CR457235|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##GQ129346|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##GQ129347|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##AF279307|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##BC007726|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##BC010014|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##AK223080|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##AK001288|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##AK302134|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##BC036521|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##AK001466|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##NM_018154|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##BX537706|LOC100507373|100507373|uncharacterized LOC100507373	0.317342	denovo_WM_21:29:0.201
chr3	149530904	149531013	reg1000231.p1	10.133	+	TSC_hg19_v1_chr3_+_149530500 NM_007282 NM_183381 AK090638	-481	+	BC171805 NM_001144960	-20349	-	TSC_hg19_v1_chr3_-_149470277 AF059618 BC001228 BC022206 AF125096 BC093077 NM_016094	-60688	-	TSC_hg19_v1_chr3_+_149530987 AK313304	28	+	BC009781 BC009803 TSC_hg19_v1_chr3_+_149531012 AF037204 AF070558 BC017878	72	+	TSC_hg19_v1_chr3_-_149688683 AB464068 AF228738 EU832616 EU832688 AK311782 L10678 BC002964 BC095444 AK307227 AK311780 BC018049 AK297915 NM_002628 NM_053024	157738	-	NM_007282|RNF13|11342|ring finger protein 13##NM_183381|RNF13|11342|ring finger protein 13##AK090638|RNF13|11342|ring finger protein 13##BC171805|ANKUB1|389161|ankyrin repeat and ubiquitin domain containing 1##NM_001144960|ANKUB1|389161|ankyrin repeat and ubiquitin domain containing 1##AF059618|COMMD2|51122|COMM domain containing 2##BC001228|COMMD2|51122|COMM domain containing 2##BC022206|COMMD2|51122|COMM domain containing 2##AF125096|COMMD2|51122|COMM domain containing 2##BC093077|COMMD2|51122|COMM domain containing 2##NM_016094|COMMD2|51122|COMM domain containing 2##AK313304|RNF13|11342|ring finger protein 13##BC009781|RNF13|11342|ring finger protein 13##BC009803|RNF13|11342|ring finger protein 13##AF037204|RNF13|11342|ring finger protein 13##AF070558|RNF13|11342|ring finger protein 13##BC017878|RNF13|11342|ring finger protein 13##AF228738|PFN2|5217|profilin 2##EU832616|PFN2|5217|profilin 2##EU832688|PFN2|5217|profilin 2##AK311782|PFN2|5217|profilin 2##L10678|PFN2|5217|profilin 2##BC002964|PFN2|5217|profilin 2##BC095444|PFN2|5217|profilin 2##AK307227|PFN2|5217|profilin 2##AK311780|PFN2|5217|profilin 2##BC018049|PFN2|5217|profilin 2##AK297915|PFN2|5217|profilin 2##NM_002628|PFN2|5217|profilin 2##NM_053024|PFN2|5217|profilin 2	0.011973	
chr19	19496460	19496591	reg1000060.p2	10.128	+	TSC_hg19_v1_chr19_+_19431662 AB385396	-64861	+	TSC_hg19_v1_chr19_+_19431637 NM_015329 AB020699	-64891	+	AK096152 AK292085 AK294618 AK301119 BC119728 BC119729 BC142988 TSC_hg19_v1_chr19_-_19431319 NM_172231	-65174	-	TSC_hg19_v1_chr19_+_19496634 NM_017660 AK303482	181	+	AB464723 DQ891603 DQ894797 AF329483 AK058166 AK313767 BC014611 NM_032037 AF348077	129840	-	TSC_hg19_v1_chr19_+_19626536 AF261134	130040	+	NM_015329|MAU2|23383|MAU2 chromatid cohesion factor homolog (C. elegans)##AB020699|MAU2|23383|MAU2 chromatid cohesion factor homolog (C. elegans)##AK096152|SUGP1|57794|SURP and G patch domain containing 1##AK292085|SUGP1|57794|SURP and G patch domain containing 1##AK294618|SUGP1|57794|SURP and G patch domain containing 1##AK301119|SUGP1|57794|SURP and G patch domain containing 1##BC119728|SUGP1|57794|SURP and G patch domain containing 1##BC119729|SUGP1|57794|SURP and G patch domain containing 1##BC142988|SUGP1|57794|SURP and G patch domain containing 1##NM_172231|SUGP1|57794|SURP and G patch domain containing 1##NM_017660|GATAD2A|54815|GATA zinc finger domain containing 2A##AK303482|GATAD2A|54815|GATA zinc finger domain containing 2A##DQ891603|TSSK6|83983|testis-specific serine kinase 6##DQ894797|TSSK6|83983|testis-specific serine kinase 6##AF329483|TSSK6|83983|testis-specific serine kinase 6##AK058166|TSSK6|83983|testis-specific serine kinase 6##AK313767|TSSK6|83983|testis-specific serine kinase 6##BC014611|TSSK6|83983|testis-specific serine kinase 6##NM_032037|TSSK6|83983|testis-specific serine kinase 6##AF348077|TSSK6|83983|testis-specific serine kinase 6##AF261134|NDUFA13|51079|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	0.445255	denovo_WM_21:20:0.445
chr11	124981521	124981653	reg1000307.p1	10.119	+	TSC_hg19_v1_chr11_-_124981479 BC132716 BC132718 BC144270 BC144276 BC144277	-118	-	NM_001080546	-8383	-	TSC_hg19_v1_chr11_+_124933200 AK290314 AK074100 BC051314 CU690800	-48357	+	NM_022062 TSC_hg19_v1_chr11_+_125034598 AK295857 AK316268	52991	+	BC045626 TSC_hg19_v1_chr11_+_125034646 AK056506 AK298999 AK316001	53039	+	TSC_hg19_v1_chr11_-_125366162 U60060 AK296554 BC009545 NM_005103 NM_022549	384554	-	BC132716|TMEM218|219854|transmembrane protein 218##BC132718|TMEM218|219854|transmembrane protein 218##BC144270|TMEM218|219854|transmembrane protein 218##BC144276|TMEM218|219854|transmembrane protein 218##BC144277|TMEM218|219854|transmembrane protein 218##NM_001080546|TMEM218|219854|transmembrane protein 218##AK290314|SLC37A2|219855|solute carrier family 37 (glycerol-3-phosphate transporter), member 2##AK074100|SLC37A2|219855|solute carrier family 37 (glycerol-3-phosphate transporter), member 2##BC051314|SLC37A2|219855|solute carrier family 37 (glycerol-3-phosphate transporter), member 2##NM_022062|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK295857|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK316268|PKNOX2|63876|PBX/knotted 1 homeobox 2##BC045626|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK298999|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK316001|PKNOX2|63876|PBX/knotted 1 homeobox 2##U60060|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##AK296554|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##BC009545|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##NM_005103|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##NM_022549|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)	1.021478	denovo_WM_21:102:0.956
chr3	127842661	127842776	reg1000252.p1	10.091	+	AB451224 AB451347 AB590226 BT007057 DQ469310 DQ891448 DQ894627 BC012886 TSC_hg19_v1_chr3_-_127842656 AB012122 AF099084 BC000519 BC002993 AF070735 AJ010058 AK222575 Y18418 AK222563 AK312290 NM_003707	-95	-	TSC_hg19_v1_chr3_+_127771342 AB528869	-71352	+	TSC_hg19_v1_chr3_+_127771307 AF346602	-71396	+	TSC_hg19_v1_chr3_+_127872314 NM_021937	29591	+	TSC_hg19_v1_chr3_+_127872325 BC007933 AF268872	29720	+	BC050288 NM_153330	343372	-	AB451224|RUVBL1|8607|RuvB-like 1 (E. coli)##AB451347|RUVBL1|8607|RuvB-like 1 (E. coli)##BT007057|RUVBL1|8607|RuvB-like 1 (E. coli)##DQ469310|RUVBL1|8607|RuvB-like 1 (E. coli)##DQ891448|RUVBL1|8607|RuvB-like 1 (E. coli)##DQ894627|RUVBL1|8607|RuvB-like 1 (E. coli)##BC012886|RUVBL1|8607|RuvB-like 1 (E. coli)##AB012122|RUVBL1|8607|RuvB-like 1 (E. coli)##AF099084|RUVBL1|8607|RuvB-like 1 (E. coli)##BC002993|RUVBL1|8607|RuvB-like 1 (E. coli)##AF070735|RUVBL1|8607|RuvB-like 1 (E. coli)##AJ010058|RUVBL1|8607|RuvB-like 1 (E. coli)##AK222575|RUVBL1|8607|RuvB-like 1 (E. coli)##Y18418|RUVBL1|8607|RuvB-like 1 (E. coli)##AK222563|RUVBL1|8607|RuvB-like 1 (E. coli)##AK312290|RUVBL1|8607|RuvB-like 1 (E. coli)##NM_003707|RUVBL1|8607|RuvB-like 1 (E. coli)##AF346602|SEC61A1|29927|Sec61 alpha 1 subunit (S. cerevisiae)##NM_021937|EEFSEC|60678|eukaryotic elongation factor, selenocysteine-tRNA-specific##BC007933|EEFSEC|60678|eukaryotic elongation factor, selenocysteine-tRNA-specific##AF268872|EEFSEC|60678|eukaryotic elongation factor, selenocysteine-tRNA-specific##BC050288|DNAJB8|165721|DnaJ (Hsp40) homolog, subfamily B, member 8##NM_153330|DNAJB8|165721|DnaJ (Hsp40) homolog, subfamily B, member 8	0.065536	
chr19	11266503	11266662	reg1000251.p1	10.088	+	AY456387 TSC_hg19_v1_chr19_-_11266459 AK075287 AK303157 AK303266 BC105037 BC105039 NM_182513	-115	-	TSC_hg19_v1_chr19_+_11200148 AB209409 BC014514 AY114155 AB384938 DQ893879 BT007361	-66397	+	TSC_hg19_v1_chr19_+_11200138 AK295612 AK296312 AK299038 AK300313	-66450	+	AB528156 AY639929 CU687364 NM_015493	38643	-	TSC_hg19_v1_chr19_-_11308222 BC082762 AB284125 NM_001136191	41676	-	TSC_hg19_v1_chr19_-_11308465 AK000011 AK225038	41880	-	AY456387|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##AK075287|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##AK303157|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##AK303266|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##BC105037|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##BC105039|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##NM_182513|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##AB209409|LDLR|3949|low density lipoprotein receptor##BC014514|LDLR|3949|low density lipoprotein receptor##AY114155|LDLR|3949|low density lipoprotein receptor##DQ893879|LDLR|3949|low density lipoprotein receptor##BT007361|LDLR|3949|low density lipoprotein receptor##AK295612|LDLR|3949|low density lipoprotein receptor##AK296312|LDLR|3949|low density lipoprotein receptor##AK299038|LDLR|3949|low density lipoprotein receptor##AK300313|LDLR|3949|low density lipoprotein receptor##AY639929|KANK2|25959|KN motif and ankyrin repeat domains 2##NM_015493|KANK2|25959|KN motif and ankyrin repeat domains 2##BC082762|KANK2|25959|KN motif and ankyrin repeat domains 2##AB284125|KANK2|25959|KN motif and ankyrin repeat domains 2##NM_001136191|KANK2|25959|KN motif and ankyrin repeat domains 2##AK000011|KANK2|25959|KN motif and ankyrin repeat domains 2##AK225038|KANK2|25959|KN motif and ankyrin repeat domains 2	2.095946	denovo_WM_21:-15:0.707	denovo_WM_21:-53:0.600	denovo_WM_21:82:0.789
chr19	20958958	20959121	reg1000274.p1	10.086	+	BC150651 AK096221 CR749233 TSC_hg19_v1_chr19_-_20844378 BC007116 BX648764 AK131567 BC107803 NM_001076675 NM_145297	-114677	-	BC015765 TSC_hg19_v1_chr19_-_20748588 NM_001159293	-210454	-	AK126842 BC022411 TSC_hg19_v1_chr19_-_20607776 BC036006 BC016785 BC017970	-351271	-	BC067843 TSC_hg19_v1_chr19_+_20959109	70	+	NM_003429 BC068066 TSC_hg19_v1_chr19_+_21106090 U35376 M61866 BC008688	147047	+	AK290475 NM_001172671 NM_025189 TSC_hg19_v1_chr19_+_21203432 AK023721 AX721141 AY269787 BC111776	244442	+	AK096221|ZNF626|199777|zinc finger protein 626##CR749233|ZNF626|199777|zinc finger protein 626##BC007116|ZNF626|199777|zinc finger protein 626##BX648764|ZNF626|199777|zinc finger protein 626##BC107803|ZNF626|199777|zinc finger protein 626##NM_001076675|ZNF626|199777|zinc finger protein 626##NM_145297|ZNF626|199777|zinc finger protein 626##BC015765|ZNF737|100129842|zinc finger protein 737##NM_001159293|ZNF737|100129842|zinc finger protein 737##BC022411|ZNF826P|664701|zinc finger protein 826, pseudogene##BC036006|ZNF826P|664701|zinc finger protein 826, pseudogene##BC016785|ZNF826P|664701|zinc finger protein 826, pseudogene##BC017970|ZNF826P|664701|zinc finger protein 826, pseudogene##NM_003429|ZNF85|7639|zinc finger protein 85##BC068066|ZNF85|7639|zinc finger protein 85##U35376|ZNF85|7639|zinc finger protein 85##M61866|ZNF85|7639|zinc finger protein 85##BC008688|ZNF85|7639|zinc finger protein 85##AK290475|ZNF430|80264|zinc finger protein 430##NM_001172671|ZNF430|80264|zinc finger protein 430##NM_025189|ZNF430|80264|zinc finger protein 430##AK023721|ZNF430|80264|zinc finger protein 430##AY269787|ZNF430|80264|zinc finger protein 430##BC111776|ZNF430|80264|zinc finger protein 430	1.00454	denovo_WM_21:-11:0.994
chr1	227127792	227127923	reg1000193.p1	10.074	+	TSC_hg19_v1_chr1_+_227058316 NM_000447 NM_012486 AK292299 AK301143	-69577	+	BC015009 NM_002221 TSC_hg19_v1_chr1_-_226926982	-200919	-	AM393750 BC141659 TSC_hg19_v1_chr1_+_226736630	-391240	+	NM_020247 TSC_hg19_v1_chr1_+_227127955	89	+	TSC_hg19_v1_chr1_+_227127991 BX648860 BC005171	118	+	TSC_hg19_v1_chr1_+_227127998 AK074693 AK092784 AK126200 AK293571 AK297735 AX747728 AK090494 AK301012 AX746479	138	+	NM_000447|PSEN2|5664|presenilin 2 (Alzheimer disease 4)##NM_012486|PSEN2|5664|presenilin 2 (Alzheimer disease 4)##AK292299|PSEN2|5664|presenilin 2 (Alzheimer disease 4)##AK301143|PSEN2|5664|presenilin 2 (Alzheimer disease 4)##BC015009|ITPKB|3707|inositol-trisphosphate 3-kinase B##NM_002221|ITPKB|3707|inositol-trisphosphate 3-kinase B##AM393750|C1orf95|375057|chromosome 1 open reading frame 95##BC141659|C1orf95|375057|chromosome 1 open reading frame 95##NM_020247|ADCK3|56997|aarF domain containing kinase 3##BX648860|ADCK3|56997|aarF domain containing kinase 3##BC005171|ADCK3|56997|aarF domain containing kinase 3##AK074693|ADCK3|56997|aarF domain containing kinase 3##AK092784|ADCK3|56997|aarF domain containing kinase 3##AK126200|ADCK3|56997|aarF domain containing kinase 3##AK293571|ADCK3|56997|aarF domain containing kinase 3##AK297735|ADCK3|56997|aarF domain containing kinase 3##AK090494|ADCK3|56997|aarF domain containing kinase 3##AK301012|ADCK3|56997|aarF domain containing kinase 3	2.406571	denovo_WM_21:-4:0.463	denovo_WM_21:-35:0.972	denovo_WM_21:76:0.972
chr7	23053738	23053879	reg1000233.p1	10.051	+	TSC_hg19_v1_chr7_-_23053750 BC018710 NM_032581	-58	-	AB030241 AK056319 AK297399 TSC_hg19_v1_chr7_-_23053708 AL833296	-113	-	CR456960 BC071973 NM_019059 TSC_hg19_v1_chr7_-_22862463 BC001732 AJ011007 AF086336 AF150733	-191365	-	TSC_hg19_v1_chr7_+_23145396 NM_001031710 NM_001172428 AK297421 AK056390	91564	+	TSC_hg19_v1_chr7_+_23145403 AK297595 AL136597 AK296219 AK297369 BC039585 BC009555 AF111113 AK290479 EF560731 EU831631 EU831716 EU831829	91716	+	NM_018846	92108	+	BC018710|FAM126A|84668|family with sequence similarity 126, member A##NM_032581|FAM126A|84668|family with sequence similarity 126, member A##AB030241|FAM126A|84668|family with sequence similarity 126, member A##AK056319|FAM126A|84668|family with sequence similarity 126, member A##AK297399|FAM126A|84668|family with sequence similarity 126, member A##AL833296|FAM126A|84668|family with sequence similarity 126, member A##CR456960|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##BC071973|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##NM_019059|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##BC001732|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AJ011007|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AF086336|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AF150733|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##NM_001031710|KLHL7|55975|kelch-like 7 (Drosophila)##NM_001172428|KLHL7|55975|kelch-like 7 (Drosophila)##AK297421|KLHL7|55975|kelch-like 7 (Drosophila)##AK056390|KLHL7|55975|kelch-like 7 (Drosophila)##AK297595|KLHL7|55975|kelch-like 7 (Drosophila)##AL136597|KLHL7|55975|kelch-like 7 (Drosophila)##AK296219|KLHL7|55975|kelch-like 7 (Drosophila)##AK297369|KLHL7|55975|kelch-like 7 (Drosophila)##BC039585|KLHL7|55975|kelch-like 7 (Drosophila)##BC009555|KLHL7|55975|kelch-like 7 (Drosophila)##AF111113|KLHL7|55975|kelch-like 7 (Drosophila)##AK290479|KLHL7|55975|kelch-like 7 (Drosophila)##EF560731|KLHL7|55975|kelch-like 7 (Drosophila)##EU831631|KLHL7|55975|kelch-like 7 (Drosophila)##EU831716|KLHL7|55975|kelch-like 7 (Drosophila)##EU831829|KLHL7|55975|kelch-like 7 (Drosophila)##NM_018846|KLHL7|55975|kelch-like 7 (Drosophila)	0.515291	denovo_WM_21:49:0.486
chr17	58755088	58755194	reg1000171.p1	10.042	+	TSC_hg19_v1_chr17_+_58677710 BC016480 BC042418 BC032826 BC033893 DQ891047 EU176552 BT009780	-77452	+	TSC_hg19_v1_chr17_+_58677553 BC060877 NM_003620 AK312902 AK299773 U78305	-77597	+	AK307666 TSC_hg19_v1_chr17_-_58603582 BC018121 AF017782 D86981 NM_006380	-151604	-	TSC_hg19_v1_chr17_+_58755255 NM_001099432 NM_017679 AK304791 AK225757 BC017390 AK314744 AF361219 BC117275 BC143386 BC143387 AK025510	72	+	TSC_hg19_v1_chr17_+_59477203 BC052566 NM_005994 AK127429 BC070054	722095	+	TSC_hg19_v1_chr17_+_59477477 U28049	722355	+	BC016480|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC042418|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC032826|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC033893|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##DQ891047|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##EU176552|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BT009780|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC060877|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##NM_003620|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##AK312902|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##AK299773|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##U78305|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##AK307666|APPBP2|10513|amyloid beta precursor protein (cytoplasmic tail) binding protein 2##BC018121|APPBP2|10513|amyloid beta precursor protein (cytoplasmic tail) binding protein 2##AF017782|APPBP2|10513|amyloid beta precursor protein (cytoplasmic tail) binding protein 2##D86981|APPBP2|10513|amyloid beta precursor protein (cytoplasmic tail) binding protein 2##NM_006380|APPBP2|10513|amyloid beta precursor protein (cytoplasmic tail) binding protein 2##NM_001099432|BCAS3|54828|breast carcinoma amplified sequence 3##NM_017679|BCAS3|54828|breast carcinoma amplified sequence 3##AK304791|BCAS3|54828|breast carcinoma amplified sequence 3##AK225757|BCAS3|54828|breast carcinoma amplified sequence 3##BC017390|BCAS3|54828|breast carcinoma amplified sequence 3##AK314744|BCAS3|54828|breast carcinoma amplified sequence 3##AF361219|BCAS3|54828|breast carcinoma amplified sequence 3##BC117275|BCAS3|54828|breast carcinoma amplified sequence 3##BC143386|BCAS3|54828|breast carcinoma amplified sequence 3##BC143387|BCAS3|54828|breast carcinoma amplified sequence 3##AK025510|BCAS3|54828|breast carcinoma amplified sequence 3##BC052566|TBX2|6909|T-box 2##NM_005994|TBX2|6909|T-box 2##BC070054|TBX2|6909|T-box 2##U28049|TBX2|6909|T-box 2	0.222306	denovo_WM_21:15:0.222
chr6	153304212	153304333	reg1000262.p1	10.023	+	AY079515 DQ891922 DQ895106 BC018905 AF129535 TSC_hg19_v1_chr6_-_153304175 AK026197 AK314456 NM_012177	-125	-	AK313950 BC009794 NM_003381 NM_194435 AK291959 M36634	-232286	+	NM_025107 AF527367 AK024922 BC128463 BC128464 GU997693 AK021612 BC022556 AL834500 CU692694	-285167	+	AJ420499 TSC_hg19_v1_chr6_-_153304715 AK055221 NM_001142522	392	-	TSC_hg19_v1_chr6_-_153323825 AK027684 CU676987 CU680090 AK001037 AK225321 AK225970 AK290662 BC014428	19540	-	TSC_hg19_v1_chr6_-_153323845 BC105973 BC011873	19571	-	AY079515|FBXO5|26271|F-box protein 5##DQ891922|FBXO5|26271|F-box protein 5##DQ895106|FBXO5|26271|F-box protein 5##BC018905|FBXO5|26271|F-box protein 5##AF129535|FBXO5|26271|F-box protein 5##AK026197|FBXO5|26271|F-box protein 5##AK314456|FBXO5|26271|F-box protein 5##NM_012177|FBXO5|26271|F-box protein 5##AK313950|VIP|7432|vasoactive intestinal peptide##BC009794|VIP|7432|vasoactive intestinal peptide##NM_003381|VIP|7432|vasoactive intestinal peptide##NM_194435|VIP|7432|vasoactive intestinal peptide##AK291959|VIP|7432|vasoactive intestinal peptide##M36634|VIP|7432|vasoactive intestinal peptide##NM_025107|MYCT1|80177|myc target 1##AF527367|MYCT1|80177|myc target 1##AK024922|MYCT1|80177|myc target 1##BC128463|MYCT1|80177|myc target 1##BC128464|MYCT1|80177|myc target 1##GU997693|MYCT1|80177|myc target 1##AK021612|MYCT1|80177|myc target 1##BC022556|MYCT1|80177|myc target 1##AL834500|MYCT1|80177|myc target 1##AJ420499|FBXO5|26271|F-box protein 5##AK055221|FBXO5|26271|F-box protein 5##NM_001142522|FBXO5|26271|F-box protein 5##AK027684|MTRF1L|54516|mitochondrial translational release factor 1-like##AK225321|MTRF1L|54516|mitochondrial translational release factor 1-like##AK225970|MTRF1L|54516|mitochondrial translational release factor 1-like##AK290662|MTRF1L|54516|mitochondrial translational release factor 1-like##BC014428|MTRF1L|54516|mitochondrial translational release factor 1-like##BC105973|MTRF1L|54516|mitochondrial translational release factor 1-like##BC011873|MTRF1L|54516|mitochondrial translational release factor 1-like	0.348449	denovo_WM_21:1:0.305
chr13	20532706	20532828	reg1000298.p2	10.009	+	TSC_hg19_v1_chr13_-_20437790 NM_001039649 NM_001039650 NM_001142684	-94959	-	AK312724 BC007048 AJ133352 AJ133353 AJ133354 AJ133355 TSC_hg19_v1_chr13_-_20437745	-95087	-	TSC_hg19_v1_chr13_-_20357160 NM_001042414	-175623	-	TSC_hg19_v1_chr13_+_20532834 BC036372 NM_003453 NM_197968 AL136621 NM_001190964 Y13472	50	+	TSC_hg19_v1_chr13_+_20532881 AK226118 AK289741	117	+	TSC_hg19_v1_chr13_+_20532911 AJ224901 BX647944 NM_001190965	198	+	NM_001039649|ZMYM5|9205|zinc finger, MYM-type 5##NM_001039650|ZMYM5|9205|zinc finger, MYM-type 5##NM_001142684|ZMYM5|9205|zinc finger, MYM-type 5##AK312724|ZMYM5|9205|zinc finger, MYM-type 5##BC007048|ZMYM5|9205|zinc finger, MYM-type 5##AJ133352|ZMYM5|9205|zinc finger, MYM-type 5##AJ133353|ZMYM5|9205|zinc finger, MYM-type 5##AJ133354|ZMYM5|9205|zinc finger, MYM-type 5##AJ133355|ZMYM5|9205|zinc finger, MYM-type 5##NM_001042414|PSPC1|55269|paraspeckle component 1##BC036372|ZMYM2|7750|zinc finger, MYM-type 2##NM_003453|ZMYM2|7750|zinc finger, MYM-type 2##NM_197968|ZMYM2|7750|zinc finger, MYM-type 2##AL136621|ZMYM2|7750|zinc finger, MYM-type 2##NM_001190964|ZMYM2|7750|zinc finger, MYM-type 2##Y13472|ZMYM2|7750|zinc finger, MYM-type 2##AK226118|ZMYM2|7750|zinc finger, MYM-type 2##AK289741|ZMYM2|7750|zinc finger, MYM-type 2##AJ224901|ZMYM2|7750|zinc finger, MYM-type 2##BX647944|ZMYM2|7750|zinc finger, MYM-type 2##NM_001190965|ZMYM2|7750|zinc finger, MYM-type 2	1.792247	denovo_WM_21:-3:0.858	denovo_WM_21:40:0.935
chr12	122028191	122028316	reg1000320.p1	10.005	+	BC115379 BC115380 TSC_hg19_v1_chr12_-_122018879 AJ459424 BX648928 NM_032590	-9339	-	TSC_hg19_v1_chr12_-_122018152 AK127328 NM_001005366	-9994	-	TSC_hg19_v1_chr12_-_121905104 BC028612 AK299827 AK316470	-123179	-	TSC_hg19_v1_chr12_+_122064448 BC075831 NM_032790 BC013386 BC015369 BC104633 AK027372 CU677285	36390	+	BC057760 NM_173855	79306	-	TSC_hg19_v1_chr12_+_122150657 AK126568 NM_001080825 BC127768 BC127769 BC035884	122491	+	BC115379|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115380|KDM2B|84678|lysine (K)-specific demethylase 2B##AJ459424|KDM2B|84678|lysine (K)-specific demethylase 2B##BX648928|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_032590|KDM2B|84678|lysine (K)-specific demethylase 2B##AK127328|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_001005366|KDM2B|84678|lysine (K)-specific demethylase 2B##BC028612|KDM2B|84678|lysine (K)-specific demethylase 2B##AK299827|KDM2B|84678|lysine (K)-specific demethylase 2B##AK316470|KDM2B|84678|lysine (K)-specific demethylase 2B##BC075831|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##NM_032790|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC013386|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC015369|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC104633|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##AK027372|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC057760|MORN3|283385|MORN repeat containing 3##NM_173855|MORN3|283385|MORN repeat containing 3##AK126568|TMEM120B|144404|transmembrane protein 120B##NM_001080825|TMEM120B|144404|transmembrane protein 120B##BC127768|TMEM120B|144404|transmembrane protein 120B##BC127769|TMEM120B|144404|transmembrane protein 120B##BC035884|TMEM120B|144404|transmembrane protein 120B	1.682225	denovo_WM_21:5:0.915	denovo_WM_21:-38:0.767
chr19	40728025	40728129	reg1000246.p1	10.000	+	TSC_hg19_v1_chr19_-_40724275 AK054935 AK289550 BC029539 NM_152479	-3789	-	TSC_hg19_v1_chr19_+_40697520 NM_002446 X90846 Z48615	-30431	+	TSC_hg19_v1_chr19_-_40596843 AK091274 AX746890 NM_001010880 AK131328 BC021982 NM_001142577 NM_001142578 NM_001142579	-131265	-	AK023327 AK301833 NM_024877	4502	-	BC032709 TSC_hg19_v1_chr19_-_40791218 AK308006 M77198	63107	-	TSC_hg19_v1_chr19_-_40791245 AK314619	63158	-	AK054935|TTC9B|148014|tetratricopeptide repeat domain 9B##AK289550|TTC9B|148014|tetratricopeptide repeat domain 9B##BC029539|TTC9B|148014|tetratricopeptide repeat domain 9B##NM_152479|TTC9B|148014|tetratricopeptide repeat domain 9B##NM_002446|MAP3K10|4294|mitogen-activated protein kinase kinase kinase 10##X90846|MAP3K10|4294|mitogen-activated protein kinase kinase kinase 10##Z48615|MAP3K10|4294|mitogen-activated protein kinase kinase kinase 10##AK091274|ZNF780A|284323|zinc finger protein 780A##NM_001010880|ZNF780A|284323|zinc finger protein 780A##AK131328|ZNF780A|284323|zinc finger protein 780A##BC021982|ZNF780A|284323|zinc finger protein 780A##NM_001142577|ZNF780A|284323|zinc finger protein 780A##NM_001142578|ZNF780A|284323|zinc finger protein 780A##NM_001142579|ZNF780A|284323|zinc finger protein 780A##AK023327|CNTD2|79935|cyclin N-terminal domain containing 2##AK301833|CNTD2|79935|cyclin N-terminal domain containing 2##NM_024877|CNTD2|79935|cyclin N-terminal domain containing 2##BC032709|AKT2|208|v-akt murine thymoma viral oncogene homolog 2##AK308006|AKT2|208|v-akt murine thymoma viral oncogene homolog 2##M77198|AKT2|208|v-akt murine thymoma viral oncogene homolog 2##AK314619|AKT2|208|v-akt murine thymoma viral oncogene homolog 2	2.622305	denovo_WM_21:-10:0.885	denovo_WM_21:21:0.758	denovo_WM_21:-42:0.979
chr19	36239336	36239465	reg1000281.p2	9.982	+	AK301992 NM_019104	-139	+	TSC_hg19_v1_chr19_+_36236539 NM_172341 AF220053 BC009575 AK312233 BC008939	-2881	+	AB528887 CU676860 DQ892422 DQ895636 BC062474 BC049208 AY569437 BC021186 TSC_hg19_v1_chr19_-_36236316 AK094213 AY461582 BC010865 AK311551 NM_001040425 NM_144987 AK303983	-3084	-	TSC_hg19_v1_chr19_+_36239476 AK293116 BC009071 AB527782 CU679243	134	+	AK026458 TSC_hg19_v1_chr19_-_36246323	6867	-	TSC_hg19_v1_chr19_-_36246416 AJ278121	7063	-	AK301992|LIN37|55957|lin-37 homolog (C. elegans)##NM_019104|LIN37|55957|lin-37 homolog (C. elegans)##NM_172341|PSENEN|55851|presenilin enhancer 2 homolog (C. elegans)##AF220053|PSENEN|55851|presenilin enhancer 2 homolog (C. elegans)##BC009575|PSENEN|55851|presenilin enhancer 2 homolog (C. elegans)##AK312233|PSENEN|55851|presenilin enhancer 2 homolog (C. elegans)##DQ892422|U2AF1L4|199746|U2 small nuclear RNA auxiliary factor 1-like 4##DQ895636|U2AF1L4|199746|U2 small nuclear RNA auxiliary factor 1-like 4##BC062474|U2AF1L4|199746|U2 small nuclear RNA auxiliary factor 1-like 4##BC049208|U2AF1L4|199746|U2 small nuclear RNA auxiliary factor 1-like 4##AY569437|U2AF1L4|199746|U2 small nuclear RNA auxiliary factor 1-like 4##BC021186|U2AF1L4|199746|U2 small nuclear RNA auxiliary factor 1-like 4##AK094213|U2AF1L4|199746|U2 small nuclear RNA auxiliary factor 1-like 4##AY461582|U2AF1L4|199746|U2 small nuclear RNA auxiliary factor 1-like 4##BC010865|U2AF1L4|199746|U2 small nuclear RNA auxiliary factor 1-like 4##NM_001040425|U2AF1L4|199746|U2 small nuclear RNA auxiliary factor 1-like 4##NM_144987|U2AF1L4|199746|U2 small nuclear RNA auxiliary factor 1-like 4##AK303983|U2AF1L4|199746|U2 small nuclear RNA auxiliary factor 1-like 4##AK293116|LIN37|55957|lin-37 homolog (C. elegans)##BC009071|LIN37|55957|lin-37 homolog (C. elegans)##AK026458|HSPB6|126393|heat shock protein, alpha-crystallin-related, B6##AJ278121|HSPB6|126393|heat shock protein, alpha-crystallin-related, B6	0.044948	
chr10	102790894	102791031	reg1000340.p1	9.945	+	FJ617449 TSC_hg19_v1_chr10_-_102790906 AK026862 AK225136 NM_001195263 NM_024895	-65	-	TSC_hg19_v1_chr10_-_102790862 AK024422	-104	-	BC058938 TSC_hg19_v1_chr10_+_102759622	-31316	+	TSC_hg19_v1_chr10_+_102790985 NM_030971	27	+	AK074707 TSC_hg19_v1_chr10_+_102792161	1199	+	TSC_hg19_v1_chr10_+_102792167 AK299405 BC000124	1227	+	FJ617449|PDZD7|79955|PDZ domain containing 7##AK026862|PDZD7|79955|PDZ domain containing 7##AK225136|PDZD7|79955|PDZ domain containing 7##NM_001195263|PDZD7|79955|PDZ domain containing 7##NM_024895|PDZD7|79955|PDZ domain containing 7##AK024422|PDZD7|79955|PDZ domain containing 7##BC058938|LZTS2|84445|leucine zipper, putative tumor suppressor 2##NM_030971|SFXN3|81855|sideroflexin 3##AK074707|SFXN3|81855|sideroflexin 3##AK299405|SFXN3|81855|sideroflexin 3##BC000124|SFXN3|81855|sideroflexin 3	0.972026	denovo_WM_21:1:0.972
chr10	101190471	101190613	reg1000208.p1	9.919	+	AK301916 AB587385 AY513279 M37400 AF052153 BC000498 AK312684 TSC_hg19_v1_chr10_-_101190382 AK293483 AK309174 NM_002079	-176	-	TSC_hg19_v1_chr10_+_101089114 AK308618	-101416	+	TSC_hg19_v1_chr10_+_101088794 NM_020348	-101718	+	NM_145285 BC025788 AK313485 AK300856	102171	+	TSC_hg19_v1_chr10_-_101380086 AF327403 AJ303078 AF327402 AJ303077 BC058937	189565	-	BC076399 TSC_hg19_v1_chr10_-_101380197 BC047312	189638	-	AK301916|GOT1|2805|glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1)##AY513279|GOT1|2805|glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1)##M37400|GOT1|2805|glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1)##AF052153|GOT1|2805|glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1)##BC000498|GOT1|2805|glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1)##AK312684|GOT1|2805|glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1)##AK293483|GOT1|2805|glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1)##AK309174|GOT1|2805|glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1)##NM_002079|GOT1|2805|glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1)##AK308618|CNNM1|26507|cyclin M1##NM_020348|CNNM1|26507|cyclin M1##NM_145285|NKX2-3|159296|NK2 homeobox 3##BC025788|NKX2-3|159296|NK2 homeobox 3##AK313485|NKX2-3|159296|NK2 homeobox 3##AK300856|NKX2-3|159296|NK2 homeobox 3##AF327403|SLC25A28|81894|solute carrier family 25, member 28##AJ303078|SLC25A28|81894|solute carrier family 25, member 28##AF327402|SLC25A28|81894|solute carrier family 25, member 28##AJ303077|SLC25A28|81894|solute carrier family 25, member 28##BC058937|SLC25A28|81894|solute carrier family 25, member 28##BC076399|SLC25A28|81894|solute carrier family 25, member 28##BC047312|SLC25A28|81894|solute carrier family 25, member 28	0.740074	denovo_WM_21:0:0.290	denovo_WM_21:-52:0.440
chr3	49824026	49824145	reg1000245.p1	9.911	+	NM_001006115 NM_153273 TSC_hg19_v1_chr3_-_49823976 AK295689	-111	-	TSC_hg19_v1_chr3_-_49823964 D87452	-124	-	NM_001242829	-459	-	BC146674 NM_001007540 AY358221 BC132756 BC144445	13175	-	BC012170 NM_203370 TSC_hg19_v1_chr3_+_49840695	16615	+	CU675375 BT007026 DQ893307 DQ893707 TSC_hg19_v1_chr3_-_49851326 BC006378	27186	-	NM_001006115|IP6K1|9807|inositol hexakisphosphate kinase 1##NM_153273|IP6K1|9807|inositol hexakisphosphate kinase 1##AK295689|IP6K1|9807|inositol hexakisphosphate kinase 1##D87452|IP6K1|9807|inositol hexakisphosphate kinase 1##NM_001242829|IP6K1|9807|inositol hexakisphosphate kinase 1##BC146674|CDHR4|389118|cadherin-related family member 4##NM_001007540|CDHR4|389118|cadherin-related family member 4##AY358221|CDHR4|389118|cadherin-related family member 4##BC132756|CDHR4|389118|cadherin-related family member 4##BC012170|FAM212A|389119|family with sequence similarity 212, member A##NM_203370|FAM212A|389119|family with sequence similarity 212, member A##BT007026|UBA7|7318|ubiquitin-like modifier activating enzyme 7##DQ893307|UBA7|7318|ubiquitin-like modifier activating enzyme 7##DQ893707|UBA7|7318|ubiquitin-like modifier activating enzyme 7##BC006378|UBA7|7318|ubiquitin-like modifier activating enzyme 7	0.0	
chr7	99746376	99746505	reg1000285.p1	9.898	+	BC031288 NM_203397	-22121	+	AK300005 NM_001190415	-28969	-	AY359100 BC032339 NM_152755 AK075537 BC019903 DQ891593 EU176583	-29127	+	TSC_hg19_v1_chr7_+_99746538 NM_001008395 BC105609 BC063401 BC130553 BC130559	115	+	TSC_hg19_v1_chr7_-_99756309 BC015722 NM_018275 BC094727 AK310170	9859	-	TSC_hg19_v1_chr7_-_99756347 AK054872	9908	-	BC031288|MBLAC1|255374|metallo-beta-lactamase domain containing 1##NM_203397|MBLAC1|255374|metallo-beta-lactamase domain containing 1##AK300005|TAF6|6878|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa##NM_001190415|TAF6|6878|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa##AY359100|CNPY4|245812|canopy 4 homolog (zebrafish)##BC032339|CNPY4|245812|canopy 4 homolog (zebrafish)##NM_152755|CNPY4|245812|canopy 4 homolog (zebrafish)##AK075537|CNPY4|245812|canopy 4 homolog (zebrafish)##BC019903|CNPY4|245812|canopy 4 homolog (zebrafish)##DQ891593|CNPY4|245812|canopy 4 homolog (zebrafish)##EU176583|CNPY4|245812|canopy 4 homolog (zebrafish)##NM_001008395|C7orf59|389541|chromosome 7 open reading frame 59##BC105609|C7orf59|389541|chromosome 7 open reading frame 59##BC063401|C7orf59|389541|chromosome 7 open reading frame 59##BC130553|C7orf59|389541|chromosome 7 open reading frame 59##BC130559|C7orf59|389541|chromosome 7 open reading frame 59##BC015722|C7orf43|55262|chromosome 7 open reading frame 43##NM_018275|C7orf43|55262|chromosome 7 open reading frame 43##BC094727|C7orf43|55262|chromosome 7 open reading frame 43##AK310170|C7orf43|55262|chromosome 7 open reading frame 43##AK054872|C7orf43|55262|chromosome 7 open reading frame 43	0.06219	
chr12	109535777	109535867	reg1000153.p1	9.871	+	TSC_hg19_v1_chr12_+_109535398 NM_080911 AK313552 Y09008	-413	+	BC070489 TSC_hg19_v1_chr12_-_109531278 AY754389 AK309062 NM_001001655 NM_001145374 NM_001145375 NM_001205179 NM_001205180	-4541	-	TSC_hg19_v1_chr12_+_109490413 NM_032663 BC004868 AJ586136 CU678780 DQ893401 DQ896783	-45398	+	NM_003362 TSC_hg19_v1_chr12_+_109535998 CR749342 AK299416 AK291341 X15653 BC050634 BC015205 CR541673 GQ129388 GQ129389	204	+	AY701053 TSC_hg19_v1_chr12_+_109551084	15240	+	TSC_hg19_v1_chr12_+_109554396 AY382667	18575	+	NM_080911|UNG|7374|uracil-DNA glycosylase##AK313552|UNG|7374|uracil-DNA glycosylase##Y09008|UNG|7374|uracil-DNA glycosylase##BC070489|ALKBH2|121642|alkB, alkylation repair homolog 2 (E. coli)##AY754389|ALKBH2|121642|alkB, alkylation repair homolog 2 (E. coli)##AK309062|ALKBH2|121642|alkB, alkylation repair homolog 2 (E. coli)##NM_001001655|ALKBH2|121642|alkB, alkylation repair homolog 2 (E. coli)##NM_001145374|ALKBH2|121642|alkB, alkylation repair homolog 2 (E. coli)##NM_001145375|ALKBH2|121642|alkB, alkylation repair homolog 2 (E. coli)##NM_001205179|ALKBH2|121642|alkB, alkylation repair homolog 2 (E. coli)##NM_001205180|ALKBH2|121642|alkB, alkylation repair homolog 2 (E. coli)##NM_032663|USP30|84749|ubiquitin specific peptidase 30##BC004868|USP30|84749|ubiquitin specific peptidase 30##AJ586136|USP30|84749|ubiquitin specific peptidase 30##DQ893401|USP30|84749|ubiquitin specific peptidase 30##DQ896783|USP30|84749|ubiquitin specific peptidase 30##NM_003362|UNG|7374|uracil-DNA glycosylase##CR749342|UNG|7374|uracil-DNA glycosylase##AK299416|UNG|7374|uracil-DNA glycosylase##AK291341|UNG|7374|uracil-DNA glycosylase##X15653|UNG|7374|uracil-DNA glycosylase##BC050634|UNG|7374|uracil-DNA glycosylase##BC015205|UNG|7374|uracil-DNA glycosylase##CR541673|UNG|7374|uracil-DNA glycosylase##GQ129388|UNG|7374|uracil-DNA glycosylase##GQ129389|UNG|7374|uracil-DNA glycosylase##AY382667|ACACB|32|acetyl-CoA carboxylase beta	1.926237	denovo_WM_21:-16:0.967	denovo_WM_21:55:0.959
chr7	158387894	158388012	reg1000302.p1	9.857	+	DQ892399 EU176514 U66702 U65065 TSC_hg19_v1_chr7_-_158380485 U81561 AF007555 BC034040 BC071570 NM_002847 NM_130842 NM_130843	-7500	-	TSC_hg19_v1_chr7_+_157647233 BC034557	-740679	+	TSC_hg19_v1_chr7_+_157129699 AK301152 AK223601 BC110289 AK297796 AL136707 NM_005494 BC002446 NM_058246 AB209859 AB015798 AB015799 AF060703 AK297497 BC000177 EU075177 AK291953 AK293025 AF075601 AF080569 AK297989 AB014888	-1258242	+	BC028618 TSC_hg19_v1_chr7_-_158497496 AK092008 AX747307 BC043404 BX537845 NM_017760	109524	-	TSC_hg19_v1_chr7_-_158611303 AK126214	223417	-	TSC_hg19_v1_chr7_-_158622198 AB033054	234238	-	DQ892399|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##EU176514|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U66702|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U65065|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U81561|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##AF007555|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC034040|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC071570|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_002847|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_130842|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_130843|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC034557|LOC100506585|100506585|uncharacterized LOC100506585##AK301152|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK223601|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC110289|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK297796|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AL136707|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##NM_005494|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC002446|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##NM_058246|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB209859|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB015798|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB015799|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF060703|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK297497|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC000177|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##EU075177|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK291953|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK293025|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF075601|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF080569|TMEM135|65084|transmembrane protein 135##AK297989|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB014888|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC028618|NCAPG2|54892|non-SMC condensin II complex, subunit G2##AK092008|NCAPG2|54892|non-SMC condensin II complex, subunit G2##BC043404|NCAPG2|54892|non-SMC condensin II complex, subunit G2##BX537845|NCAPG2|54892|non-SMC condensin II complex, subunit G2##NM_017760|NCAPG2|54892|non-SMC condensin II complex, subunit G2##AK126214|ESYT2|57488|extended synaptotagmin-like protein 2##AB033054|ESYT2|57488|extended synaptotagmin-like protein 2	0.0	
chr16	1832868	1832974	reg1000035.p2	9.853	+	TSC_hg19_v1_chr16_-_1832576 NM_080861	-329	-	AK057850 TSC_hg19_v1_chr16_-_1832573	-348	-	TSC_hg19_v1_chr16_-_1832545 BC041897 BC047441 BC007588 BC035065 BC024244 AK074190 AK302041 BC065515	-486	-	TSC_hg19_v1_chr16_+_1832982 AK093593 AX748219 NM_012225 BC008005 AK001023 AF118394 BC002768 BX648907 AK315611 AK300696	38	+	TSC_hg19_v1_chr16_+_1833010 CU675895	91	+	AB464593 DQ891534 DQ894723 AK292182 AK313198 M86826 AK315808 AK309598 AK303146 BC025681 NM_001146006 NM_004970	10771	-	NM_080861|SPSB3|90864|splA/ryanodine receptor domain and SOCS box containing 3##AK057850|SPSB3|90864|splA/ryanodine receptor domain and SOCS box containing 3##BC041897|SPSB3|90864|splA/ryanodine receptor domain and SOCS box containing 3##BC047441|SPSB3|90864|splA/ryanodine receptor domain and SOCS box containing 3##BC007588|SPSB3|90864|splA/ryanodine receptor domain and SOCS box containing 3##BC035065|SPSB3|90864|splA/ryanodine receptor domain and SOCS box containing 3##BC024244|SPSB3|90864|splA/ryanodine receptor domain and SOCS box containing 3##AK074190|SPSB3|90864|splA/ryanodine receptor domain and SOCS box containing 3##BC065515|SPSB3|90864|splA/ryanodine receptor domain and SOCS box containing 3##AK093593|NUBP2|10101|nucleotide binding protein 2##NM_012225|NUBP2|10101|nucleotide binding protein 2##BC008005|NUBP2|10101|nucleotide binding protein 2##AK001023|NUBP2|10101|nucleotide binding protein 2##AF118394|NUBP2|10101|nucleotide binding protein 2##BC002768|NUBP2|10101|nucleotide binding protein 2##BX648907|NUBP2|10101|nucleotide binding protein 2##AK315611|NUBP2|10101|nucleotide binding protein 2##AK300696|NUBP2|10101|nucleotide binding protein 2##DQ891534|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##DQ894723|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##AK292182|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##AK313198|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##M86826|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##AK315808|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##AK303146|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##BC025681|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##NM_001146006|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##NM_004970|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit	1.459132	denovo_WM_21:12:0.765	denovo_WM_21:-48:0.694
chr5	149340177	149340302	reg1000254.p1	9.851	+	BC144044 BC035909 AB593141 M26061 NM_000440	-15921	-	AK123614 NM_001172699	-188737	+	TSC_hg19_v1_chr5_+_149109872 AY188949 AY188950 AF468496 AF468497 AY188947 AY188948 AK095391	-230363	+	TSC_hg19_v1_chr5_+_149340320 NM_000112	69	+	TSC_hg19_v1_chr5_+_149340352 AK312596	112	+	TSC_hg19_v1_chr5_+_149340476 BC059390 AK290358	234	+	BC144044|PDE6A|5145|phosphodiesterase 6A, cGMP-specific, rod, alpha##BC035909|PDE6A|5145|phosphodiesterase 6A, cGMP-specific, rod, alpha##AB593141|PDE6A|5145|phosphodiesterase 6A, cGMP-specific, rod, alpha##M26061|PDE6A|5145|phosphodiesterase 6A, cGMP-specific, rod, alpha##NM_000440|PDE6A|5145|phosphodiesterase 6A, cGMP-specific, rod, alpha##AK123614|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##NM_001172699|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AY188949|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AY188950|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AF468496|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AF468497|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AY188947|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AY188948|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AK095391|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##NM_000112|SLC26A2|1836|solute carrier family 26 (sulfate transporter), member 2##AK312596|SLC26A2|1836|solute carrier family 26 (sulfate transporter), member 2##BC059390|SLC26A2|1836|solute carrier family 26 (sulfate transporter), member 2##AK290358|SLC26A2|1836|solute carrier family 26 (sulfate transporter), member 2	0.462521	denovo_WM_21:-31:0.463
chr14	99947374	99947510	reg1000203.p1	9.839	+	TSC_hg19_v1_chr14_-_99947224 BX161471 NM_032233 NM_199123 BC142995	-221	-	TSC_hg19_v1_chr14_-_99947170 BC037395	-263	-	TSC_hg19_v1_chr14_-_99947132 BC066931 BX161441	-320	-	TSC_hg19_v1_chr14_+_99947745 NM_001099402 BC015935 AK311075	317	+	TSC_hg19_v1_chr14_-_100070545 NM_001144995	123142	-	AB593097 AY358173 NM_001127258 NM_032425 BC132877 BC136577 HQ258579 AB593096	164120	+	BX161471|SETD3|84193|SET domain containing 3##NM_032233|SETD3|84193|SET domain containing 3##NM_199123|SETD3|84193|SET domain containing 3##BC142995|SETD3|84193|SET domain containing 3##BC037395|SETD3|84193|SET domain containing 3##BC066931|SETD3|84193|SET domain containing 3##BX161441|SETD3|84193|SET domain containing 3##NM_001099402|CCNK|8812|cyclin K##BC015935|CCNK|8812|cyclin K##AK311075|CCNK|8812|cyclin K##NM_001144995|CCDC85C|317762|coiled-coil domain containing 85C##AB593097|HHIPL1|84439|HHIP-like 1##AY358173|HHIPL1|84439|HHIP-like 1##NM_001127258|HHIPL1|84439|HHIP-like 1##NM_032425|HHIPL1|84439|HHIP-like 1##BC132877|HHIPL1|84439|HHIP-like 1##BC136577|HHIPL1|84439|HHIP-like 1##HQ258579|HHIPL1|84439|HHIP-like 1##AB593096|HHIPL1|84439|HHIP-like 1	0.803885	denovo_WM_21:7:0.804
chr19	1133678	1133812	reg1000299.p1	9.838	+	TSC_hg19_v1_chr19_-_1132221 AK125139 AK296849 AK309167 NM_001100122	-1496	-	TSC_hg19_v1_chr19_-_1111972 BC106021	-21758	-	TSC_hg19_v1_chr19_+_1104646 NM_001039848	-29108	+	TSC_hg19_v1_chr19_-_1174256 BC052799	40483	-	TSC_hg19_v1_chr19_-_1174260 AB023180	40514	-	TSC_hg19_v1_chr19_-_1174268 AK300981 AK292407 NM_014963	40534	-	AK125139|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##AK296849|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##AK309167|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##NM_001100122|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##BC106021|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##NM_001039848|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)##AB023180|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##AK300981|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##AK292407|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##NM_014963|SBNO2|22904|strawberry notch homolog 2 (Drosophila)	4.601163	denovo_WM_21:-7:0.952	denovo_WM_21:21:0.952	denovo_WM_21:-36:0.952	denovo_WM_21:50:0.952	denovo_WM_21:-76:0.692
chr1	212458461	212458614	reg1000264.p2	9.827	+	TSC_hg19_v1_chr1_+_212209137 AF195765 AK299649 BC033297 AK027651 CU689622 CU689648 DQ641253	-249357	+	BC033540 TSC_hg19_v1_chr1_+_212209112 AF345896	-249419	+	NM_016448 AK292343 TSC_hg19_v1_chr1_+_212209090 AK000742 AK303346	-249523	+	TSC_hg19_v1_chr1_+_212458776 AK312530	241	+	TSC_hg19_v1_chr1_+_212458867 L42373 NM_006243	335	+	BC110883 TSC_hg19_v1_chr1_+_212459259	677	+	AF195765|DTL|51514|denticleless homolog (Drosophila)##AK299649|DTL|51514|denticleless homolog (Drosophila)##BC033297|DTL|51514|denticleless homolog (Drosophila)##AK027651|DTL|51514|denticleless homolog (Drosophila)##DQ641253|DTL|51514|denticleless homolog (Drosophila)##BC033540|DTL|51514|denticleless homolog (Drosophila)##AF345896|DTL|51514|denticleless homolog (Drosophila)##NM_016448|DTL|51514|denticleless homolog (Drosophila)##AK292343|DTL|51514|denticleless homolog (Drosophila)##AK000742|DTL|51514|denticleless homolog (Drosophila)##AK303346|DTL|51514|denticleless homolog (Drosophila)##AK312530|PPP2R5A|5525|protein phosphatase 2, regulatory subunit B', alpha##L42373|PPP2R5A|5525|protein phosphatase 2, regulatory subunit B', alpha##NM_006243|PPP2R5A|5525|protein phosphatase 2, regulatory subunit B', alpha##BC110883|PPP2R5A|5525|protein phosphatase 2, regulatory subunit B', alpha	0.587978	denovo_WM_21:-42:0.516
chr11	66383956	66384127	reg1000277.p2	9.821	+	TSC_hg19_v1_chr11_+_66360672 AY113179 AF002210 NM_005125 BC105016 BC112055 CR541928	-23343	+	CU689898 TSC_hg19_v1_chr11_-_66360516 AK001648 BC034469 NM_018219	-23520	-	DQ893245 AJ007331 TSC_hg19_v1_chr11_-_66336078 AK313657 BC036451 AF136279 BC011682 BC013359 AF088886 NM_003793	-48016	-	NM_001198836 NM_001198837 NM_001198845 NM_001198846 NM_006328 TSC_hg19_v1_chr11_+_66384100 AF315632 AF315633 EU287938 AK222830 AK297907 AK307254 AK021768 AK292805 AF080561 BC000488 BC023619 DQ294957 EU287939 EU446504	80	+	AB464693 TSC_hg19_v1_chr11_+_66395849	11750	+	NM_001198843 NM_001198844 NM_002896 TSC_hg19_v1_chr11_+_66406176 AK303984 BC021120 AK225071 BC032735	22092	+	AY113179|CCS|9973|copper chaperone for superoxide dismutase##AF002210|CCS|9973|copper chaperone for superoxide dismutase##NM_005125|CCS|9973|copper chaperone for superoxide dismutase##BC105016|CCS|9973|copper chaperone for superoxide dismutase##BC112055|CCS|9973|copper chaperone for superoxide dismutase##CR541928|CCS|9973|copper chaperone for superoxide dismutase##AK001648|CCDC87|55231|coiled-coil domain containing 87##BC034469|CCDC87|55231|coiled-coil domain containing 87##NM_018219|CCDC87|55231|coiled-coil domain containing 87##DQ893245|CTSF|8722|cathepsin F##AJ007331|CTSF|8722|cathepsin F##AK313657|CTSF|8722|cathepsin F##BC036451|CTSF|8722|cathepsin F##AF136279|CTSF|8722|cathepsin F##BC011682|CTSF|8722|cathepsin F##BC013359|CTSF|8722|cathepsin F##AF088886|CTSF|8722|cathepsin F##NM_003793|CTSF|8722|cathepsin F##NM_001198836|RBM14|10432|RNA binding motif protein 14##NM_001198837|RBM14|10432|RNA binding motif protein 14##NM_001198845|RBM14-RBM4|100526737|RBM14-RBM4 readthrough##NM_001198846|RBM14-RBM4|100526737|RBM14-RBM4 readthrough##NM_006328|RBM14|10432|RNA binding motif protein 14##AF315632|RBM14|10432|RNA binding motif protein 14##AF315633|RBM14|10432|RNA binding motif protein 14##AK222830|RBM14|10432|RNA binding motif protein 14##AK021768|RBM14|10432|RNA binding motif protein 14##AF080561|RBM14|10432|RNA binding motif protein 14##BC000488|RBM14|10432|RNA binding motif protein 14##BC023619|RBM14|10432|RNA binding motif protein 14##DQ294957|RBM14|10432|RNA binding motif protein 14##EU446504|RBM14|10432|RNA binding motif protein 14##NM_001198843|RBM4|5936|RNA binding motif protein 4##NM_001198844|RBM4|5936|RNA binding motif protein 4##NM_002896|RBM4|5936|RNA binding motif protein 4##AK303984|RBM4|5936|RNA binding motif protein 4##BC021120|RBM4|5936|RNA binding motif protein 4##AK225071|RBM4|5936|RNA binding motif protein 4##BC032735|RBM4|5936|RNA binding motif protein 4	1.980568	denovo_WM_21:12:0.781	denovo_WM_21:-20:0.978	denovo_WM_21:-59:0.222
chr14	20929706	20929845	reg1000177.p1	9.813	+	BC020947 BX161490 NM_001100814 NM_144568 TSC_hg19_v1_chr14_-_20929650 AK314021	-73	-	CU676778 CU678260 AM392745 AB528259 BC002867 AL137727 TSC_hg19_v1_chr14_-_20929594 BX248025	-232	-	TSC_hg19_v1_chr14_+_20923709 AB463413 BT007236 BT020133 DQ891814 DQ894998	-6021	+	NM_000270 BC106074 AK307340 AK307364 AK313490 X00737 TSC_hg19_v1_chr14_+_20937568 AK098544 BC104206 BC104207 AB591016	7834	+	BC133002 BC133028 AY665805 NM_001012975	48845	+	AY907670 EF061296 EF061297 EF061298 EF061299 EF061300 EF061301 EF061302 EF061303 EF061304 NM_001001673 NM_001110356 NM_001110357 NM_001110358 NM_001110359 NM_001110360 NM_001110361	99314	-	BC020947|TMEM55B|90809|transmembrane protein 55B##BX161490|TMEM55B|90809|transmembrane protein 55B##NM_001100814|TMEM55B|90809|transmembrane protein 55B##NM_144568|TMEM55B|90809|transmembrane protein 55B##AK314021|TMEM55B|90809|transmembrane protein 55B##AM392745|TMEM55B|90809|transmembrane protein 55B##BC002867|TMEM55B|90809|transmembrane protein 55B##AL137727|TMEM55B|90809|transmembrane protein 55B##BX248025|TMEM55B|90809|transmembrane protein 55B##BT007236|APEX1|328|APEX nuclease (multifunctional DNA repair enzyme) 1##BT020133|APEX1|328|APEX nuclease (multifunctional DNA repair enzyme) 1##DQ891814|APEX1|328|APEX nuclease (multifunctional DNA repair enzyme) 1##DQ894998|APEX1|328|APEX nuclease (multifunctional DNA repair enzyme) 1##NM_000270|PNP|4860|purine nucleoside phosphorylase##BC106074|PNP|4860|purine nucleoside phosphorylase##AK307340|PNP|4860|purine nucleoside phosphorylase##AK307364|PNP|4860|purine nucleoside phosphorylase##AK313490|PNP|4860|purine nucleoside phosphorylase##X00737|PNP|4860|purine nucleoside phosphorylase##AK098544|PNP|4860|purine nucleoside phosphorylase##BC104206|PNP|4860|purine nucleoside phosphorylase##BC104207|PNP|4860|purine nucleoside phosphorylase##BC133002|RNASE10|338879|ribonuclease, RNase A family, 10 (non-active)##BC133028|RNASE10|338879|ribonuclease, RNase A family, 10 (non-active)##AY665805|RNASE10|338879|ribonuclease, RNase A family, 10 (non-active)##NM_001012975|RNASE10|338879|ribonuclease, RNase A family, 10 (non-active)##AY907670|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##EF061296|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##EF061297|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##EF061298|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##EF061299|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##EF061300|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##EF061301|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##EF061302|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##EF061303|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##EF061304|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##NM_001001673|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##NM_001110356|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##NM_001110357|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##NM_001110358|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##NM_001110359|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##NM_001110360|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##NM_001110361|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)	0.0	
chr19	19249304	19249416	reg1000296.p1	9.812	+	TSC_hg19_v1_chr19_-_19249268 BC005210 AK096964	-85	-	TSC_hg19_v1_chr19_-_19249264 AK225424 AK000429 NM_017814	-106	-	TSC_hg19_v1_chr19_+_19174802 NM_178526 BC045598 FN356975	-74551	+	TSC_hg19_v1_chr19_-_19281067 AK057210	31707	-	TSC_hg19_v1_chr19_-_19281094 NM_001145785	31733	-	TSC_hg19_v1_chr19_-_19302962 X68502 EU831418 EU831443 EU831511 EU831535 X63380 BC064537 BC000489 BC004449 BC010178 BC010931 AK301086 AK316328 BC157868 BC171869	53604	-	BC005210|TMEM161A|54929|transmembrane protein 161A##AK096964|TMEM161A|54929|transmembrane protein 161A##AK225424|TMEM161A|54929|transmembrane protein 161A##AK000429|TMEM161A|54929|transmembrane protein 161A##NM_017814|TMEM161A|54929|transmembrane protein 161A##NM_178526|SLC25A42|284439|solute carrier family 25, member 42##BC045598|SLC25A42|284439|solute carrier family 25, member 42##FN356975|SLC25A42|284439|solute carrier family 25, member 42##AK057210|MEF2B|100271849|myocyte enhancer factor 2B##NM_001145785|MEF2B|100271849|myocyte enhancer factor 2B##X68502|MEF2BNB-MEF2B|4207|MEF2BNB-MEF2B readthrough##EU831418|MEF2BNB|729991|MEF2B neighbor##EU831443|MEF2BNB|729991|MEF2B neighbor##EU831511|MEF2BNB|729991|MEF2B neighbor##EU831535|MEF2BNB|729991|MEF2B neighbor##X63380|MEF2BNB-MEF2B|4207|MEF2BNB-MEF2B readthrough##BC064537|MEF2BNB|729991|MEF2B neighbor##BC000489|MEF2BNB|729991|MEF2B neighbor##BC004449|MEF2BNB|729991|MEF2B neighbor##BC010178|MEF2BNB|729991|MEF2B neighbor##BC010931|MEF2BNB|729991|MEF2B neighbor##AK301086|MEF2BNB-MEF2B|4207|MEF2BNB-MEF2B readthrough##AK316328|MEF2BNB-MEF2B|4207|MEF2BNB-MEF2B readthrough##BC157868|MEF2BNB|729991|MEF2B neighbor##BC171869|MEF2BNB|729991|MEF2B neighbor	1.289668	denovo_WM_21:-9:0.699	denovo_WM_21:-51:0.590
chr2	201828402	201828543	reg1000331.p1	9.804	+	TSC_hg19_v1_chr2_-_201828407 AK316433 U40268 U27459 BC014834 AK302614 NM_006190	-153	-	AY251943 AY251944 BC007654 NM_001142356 CU675739 DQ896612 AB463931 AL834430	-71753	+	NM_001136039 NM_001142355 TSC_hg19_v1_chr2_+_201754095 AF060513 AF283538 AK314709 NM_021824 AK225905 AB038949 AK023378 AF182416	-74354	+	AL832234 TSC_hg19_v1_chr2_-_201936363	107886	-	TSC_hg19_v1_chr2_-_201936368 AL833403	107904	-	AK315104 TSC_hg19_v1_chr2_-_201936386 AL832346	107915	-	AK316433|ORC2|4999|origin recognition complex, subunit 2##U40268|ORC2|4999|origin recognition complex, subunit 2##U27459|ORC2|4999|origin recognition complex, subunit 2##BC014834|ORC2|4999|origin recognition complex, subunit 2##AK302614|ORC2|4999|origin recognition complex, subunit 2##NM_006190|ORC2|4999|origin recognition complex, subunit 2##AY251943|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AY251944|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##BC007654|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##NM_001142356|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##DQ896612|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AL834430|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##NM_001136039|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##NM_001142355|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AF060513|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AF283538|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AK314709|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##NM_021824|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AK225905|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AB038949|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AK023378|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AF182416|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AL832234|FAM126B|285172|family with sequence similarity 126, member B##AL833403|FAM126B|285172|family with sequence similarity 126, member B##AK315104|FAM126B|285172|family with sequence similarity 126, member B##AL832346|FAM126B|285172|family with sequence similarity 126, member B	0.965256	denovo_WM_21:-22:0.965
chr16	1728128	1728248	reg1000164.p1	9.795	+	NM_020825	-63548	+	TSC_hg19_v1_chr16_-_1662054 NM_014714	-66150	-	TSC_hg19_v1_chr16_-_1660720 AB011162 AK299035 AK299115	-67496	-	AK309909 AK296998 NM_144570 TSC_hg19_v1_chr16_+_1728279 AK023154	80	+	BC060853 TSC_hg19_v1_chr16_+_1728289	98	+	TSC_hg19_v1_chr16_+_1728290 BC014438 AK296888 AK303927 AY598330 AK309930	118	+	NM_020825|CRAMP1L|57585|Crm, cramped-like (Drosophila)##NM_014714|IFT140|9742|intraflagellar transport 140 homolog (Chlamydomonas)##AB011162|IFT140|9742|intraflagellar transport 140 homolog (Chlamydomonas)##AK299035|IFT140|9742|intraflagellar transport 140 homolog (Chlamydomonas)##AK299115|IFT140|9742|intraflagellar transport 140 homolog (Chlamydomonas)##AK309909|HN1L|90861|hematological and neurological expressed 1-like##AK296998|HN1L|90861|hematological and neurological expressed 1-like##NM_144570|HN1L|90861|hematological and neurological expressed 1-like##AK023154|HN1L|90861|hematological and neurological expressed 1-like##BC060853|HN1L|90861|hematological and neurological expressed 1-like##BC014438|HN1L|90861|hematological and neurological expressed 1-like##AK296888|HN1L|90861|hematological and neurological expressed 1-like##AK303927|HN1L|90861|hematological and neurological expressed 1-like##AY598330|HN1L|90861|hematological and neurological expressed 1-like##AK309930|HN1L|90861|hematological and neurological expressed 1-like	0.011441	
chr14	104181968	104182079	reg1000016.p2	9.777	+	TSC_hg19_v1_chr14_-_104181759 AK022829 BC011725 BX161398 BC001036 AK023646 NM_001100118 NM_001100119 NM_005432	-240	-	AK124498 TSC_hg19_v1_chr14_-_104178577	-3515	-	TSC_hg19_v1_chr14_+_104095547 NM_001130107 NM_005552 NM_182923 AK294508 BC008881 L04733 AF527736 AY180164	-86372	+	TSC_hg19_v1_chr14_+_104182144 NM_001198953 NM_024071 BC005999 AK057816 BC001130 AY395756 AK290519 BX248261	93	+	BC136527 AJ318887 TSC_hg19_v1_chr14_-_104313913 BC035446 NM_015316	131829	-	BX161388 TSC_hg19_v1_chr14_-_104387847 BC047289 BC063419 BC000429 BC001944	205822	-	AK022829|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##BC011725|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##BX161398|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##BC001036|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##AK023646|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##NM_001100118|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##NM_001100119|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##NM_005432|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##AK124498|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##NM_001130107|KLC1|3831|kinesin light chain 1##NM_005552|KLC1|3831|kinesin light chain 1##NM_182923|KLC1|3831|kinesin light chain 1##AK294508|KLC1|3831|kinesin light chain 1##BC008881|KLC1|3831|kinesin light chain 1##L04733|KLC1|3831|kinesin light chain 1##AF527736|KLC1|3831|kinesin light chain 1##AY180164|KLC1|3831|kinesin light chain 1##NM_001198953|ZFYVE21|79038|zinc finger, FYVE domain containing 21##NM_024071|ZFYVE21|79038|zinc finger, FYVE domain containing 21##BC005999|ZFYVE21|79038|zinc finger, FYVE domain containing 21##AK057816|ZFYVE21|79038|zinc finger, FYVE domain containing 21##BC001130|ZFYVE21|79038|zinc finger, FYVE domain containing 21##AY395756|ZFYVE21|79038|zinc finger, FYVE domain containing 21##AK290519|ZFYVE21|79038|zinc finger, FYVE domain containing 21##BX248261|ZFYVE21|79038|zinc finger, FYVE domain containing 21##BC136527|PPP1R13B|23368|protein phosphatase 1, regulatory subunit 13B##AJ318887|PPP1R13B|23368|protein phosphatase 1, regulatory subunit 13B##BC035446|PPP1R13B|23368|protein phosphatase 1, regulatory subunit 13B##NM_015316|PPP1R13B|23368|protein phosphatase 1, regulatory subunit 13B##BX161388|C14orf2|9556|chromosome 14 open reading frame 2##BC047289|C14orf2|9556|chromosome 14 open reading frame 2##BC063419|C14orf2|9556|chromosome 14 open reading frame 2##BC000429|C14orf2|9556|chromosome 14 open reading frame 2##BC001944|C14orf2|9556|chromosome 14 open reading frame 2	0.330634	
chr7	150076249	150076405	reg1000301.p1	9.771	+	AK226081 AJ245553 NM_014374 BC000363 BC001760 AB529137 CU674178 CU674872 EU446796	-8036	+	TSC_hg19_v1_chr7_+_150065968 AK225227 AK025356	-10335	+	TSC_hg19_v1_chr7_+_150065881 NM_001099695 NM_001099696 NM_013400	-10457	+	NM_173680 BC038111	100	+	BC143767 TSC_hg19_v1_chr7_+_150102384	26068	+	BC052099 TSC_hg19_v1_chr7_+_150130817 AK097158 BC109387	54491	+	AK226081|REPIN1|29803|replication initiator 1##AJ245553|REPIN1|29803|replication initiator 1##NM_014374|REPIN1|29803|replication initiator 1##BC000363|REPIN1|29803|replication initiator 1##BC001760|REPIN1|29803|replication initiator 1##EU446796|REPIN1|29803|replication initiator 1##AK225227|REPIN1|29803|replication initiator 1##AK025356|REPIN1|29803|replication initiator 1##NM_001099695|REPIN1|29803|replication initiator 1##NM_001099696|REPIN1|29803|replication initiator 1##NM_013400|REPIN1|29803|replication initiator 1##NM_173680|ZNF775|285971|zinc finger protein 775##BC038111|ZNF775|285971|zinc finger protein 775##BC052099|LOC285972|285972|uncharacterized LOC285972##AK097158|LOC285972|285972|uncharacterized LOC285972##BC109387|LOC285972|285972|uncharacterized LOC285972	0.53627	denovo_WM_21:-79:0.410
chr3	9438739	9438856	reg1000178.p1	9.766	+	TSC_hg19_v1_chr3_-_9438337 BC036698 BC052961	-459	-	TSC_hg19_v1_chr3_+_9404750 NM_001114092 NM_015453 AK023263 BC001622 AK001680 BC010421	-34022	+	TSC_hg19_v1_chr3_-_9291320 NM_001033117 NM_014850 BC140004 AK054831	-147479	-	AK093640 TSC_hg19_v1_chr3_-_9439124 AL110136	350	-	TSC_hg19_v1_chr3_+_9439298 NM_001080517	564	+	TSC_hg19_v1_chr3_+_9439556 AK092046 AX747332	777	+	BC036698|LOC440944|440944|uncharacterized LOC440944##BC052961|LOC440944|440944|uncharacterized LOC440944##NM_001114092|THUMPD3|25917|THUMP domain containing 3##NM_015453|THUMPD3|25917|THUMP domain containing 3##AK023263|THUMPD3|25917|THUMP domain containing 3##BC001622|THUMPD3|25917|THUMP domain containing 3##AK001680|THUMPD3|25917|THUMP domain containing 3##BC010421|THUMPD3|25917|THUMP domain containing 3##NM_001033117|SRGAP3|9901|SLIT-ROBO Rho GTPase activating protein 3##NM_014850|SRGAP3|9901|SLIT-ROBO Rho GTPase activating protein 3##BC140004|SRGAP3|9901|SLIT-ROBO Rho GTPase activating protein 3##AK054831|SRGAP3|9901|SLIT-ROBO Rho GTPase activating protein 3##AK093640|LOC440944|440944|uncharacterized LOC440944##AL110136|LOC440944|440944|uncharacterized LOC440944##NM_001080517|SETD5|55209|SET domain containing 5##AK092046|SETD5|55209|SET domain containing 5	0.85554	denovo_WM_21:25:0.856
chr1	154946958	154947121	reg1000295.p1	9.762	+	TSC_hg19_v1_chr1_-_154946871 AK315842 AK292143 NM_001130041 NM_001202859 NM_003029	-131	-	TSC_hg19_v1_chr1_-_154946849 BC014158 AK130014	-199	-	X68148 TSC_hg19_v1_chr1_-_154946815	-227	-	TSC_hg19_v1_chr1_+_154947138 NM_001826	90	+	TSC_hg19_v1_chr1_+_154947156 AK311769 BC070319 BC070320	114	+	TSC_hg19_v1_chr1_+_154947168 AK307066 BC007751 AF274941 AF279897 BC015629 X54941 AB590248 DQ890700 DQ892972 DQ893884 DQ895958 EU176486 EU176487 BT007196 AF274943	192	+	AK315842|SHC1|6464|SHC (Src homology 2 domain containing) transforming protein 1##AK292143|SHC1|6464|SHC (Src homology 2 domain containing) transforming protein 1##NM_001130041|SHC1|6464|SHC (Src homology 2 domain containing) transforming protein 1##NM_001202859|SHC1|6464|SHC (Src homology 2 domain containing) transforming protein 1##NM_003029|SHC1|6464|SHC (Src homology 2 domain containing) transforming protein 1##BC014158|SHC1|6464|SHC (Src homology 2 domain containing) transforming protein 1##AK130014|SHC1|6464|SHC (Src homology 2 domain containing) transforming protein 1##X68148|SHC1|6464|SHC (Src homology 2 domain containing) transforming protein 1##NM_001826|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##AK311769|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##BC070319|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##BC070320|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##AK307066|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##BC007751|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##AF274941|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##AF279897|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##BC015629|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##X54941|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##DQ890700|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##DQ892972|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##DQ893884|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##DQ895958|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##EU176486|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##EU176487|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##BT007196|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##AF274943|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B	2.870717	denovo_WM_21:19:0.986	denovo_WM_21:67:0.898	denovo_WM_21:-109:0.811
chr1	110881505	110881689	reg1000087.p1	9.756	+	AK310193 M64676 TSC_hg19_v1_chr1_+_110754079 BC101769	-127600	+	TSC_hg19_v1_chr1_+_110753347 NM_001039574 NM_004978	-128253	+	NM_001010898 AK289982 TSC_hg19_v1_chr1_+_110693135	-188463	+	AF368062 AF368063 AF368064 NM_001201545 NM_022768 BC098140 BC103493 BC103507 BC103660 TSC_hg19_v1_chr1_+_110882045	397	+	BC047479 TSC_hg19_v1_chr1_+_110882057	460	+	TSC_hg19_v1_chr1_+_110882092 AK022541 BC006397 BC062316	484	+	AK310193|KCNC4|3749|potassium voltage-gated channel, Shaw-related subfamily, member 4##M64676|KCNC4|3749|potassium voltage-gated channel, Shaw-related subfamily, member 4##BC101769|KCNC4|3749|potassium voltage-gated channel, Shaw-related subfamily, member 4##NM_001039574|KCNC4|3749|potassium voltage-gated channel, Shaw-related subfamily, member 4##NM_004978|KCNC4|3749|potassium voltage-gated channel, Shaw-related subfamily, member 4##NM_001010898|SLC6A17|388662|solute carrier family 6, member 17##AK289982|SLC6A17|388662|solute carrier family 6, member 17##AF368062|RBM15|64783|RNA binding motif protein 15##AF368063|RBM15|64783|RNA binding motif protein 15##AF368064|RBM15|64783|RNA binding motif protein 15##NM_001201545|RBM15|64783|RNA binding motif protein 15##NM_022768|RBM15|64783|RNA binding motif protein 15##BC098140|RBM15|64783|RNA binding motif protein 15##BC103493|RBM15|64783|RNA binding motif protein 15##BC103507|RBM15|64783|RNA binding motif protein 15##BC103660|RBM15|64783|RNA binding motif protein 15##BC047479|RBM15|64783|RNA binding motif protein 15##AK022541|RBM15|64783|RNA binding motif protein 15##BC006397|RBM15|64783|RNA binding motif protein 15##BC062316|RBM15|64783|RNA binding motif protein 15	0.790291	denovo_WM_21:-43:0.790
chr7	129710240	129710373	reg1000265.p2	9.752	+	TSC_hg19_v1_chr7_-_129691215 BC000190 AB463378 AJ537494 AM393415 CU679956 BC011551 AF151050 AK001317 AK022373 NM_016478	-19085	-	TSC_hg19_v1_chr7_-_129592801 NM_003344 NM_182697	-117497	-	BC006277 TSC_hg19_v1_chr7_-_129592785 NM_001202498	-117555	-	TSC_hg19_v1_chr7_+_129710381 BC044884 NM_014997 BC036464	54	+	TSC_hg19_v1_chr7_+_129710402 D87454	127	+	TSC_hg19_v1_chr7_+_129710580 BC009977	293	+	BC000190|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AJ537494|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AM393415|ZC3HC1|51530|zinc finger, C3HC-type containing 1##BC011551|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AF151050|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AK001317|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AK022373|ZC3HC1|51530|zinc finger, C3HC-type containing 1##NM_016478|ZC3HC1|51530|zinc finger, C3HC-type containing 1##NM_003344|UBE2H|7328|ubiquitin-conjugating enzyme E2H##NM_182697|UBE2H|7328|ubiquitin-conjugating enzyme E2H##BC006277|UBE2H|7328|ubiquitin-conjugating enzyme E2H##NM_001202498|UBE2H|7328|ubiquitin-conjugating enzyme E2H##BC044884|KLHDC10|23008|kelch domain containing 10##NM_014997|KLHDC10|23008|kelch domain containing 10##BC036464|KLHDC10|23008|kelch domain containing 10##D87454|KLHDC10|23008|kelch domain containing 10##BC009977|KLHDC10|23008|kelch domain containing 10	0.09798	
chr3	185826929	185827057	reg1000271.p1	9.748	+	TSC_hg19_v1_chr3_-_185826879 BC007333 NM_004454	-137	-	AK301878 TSC_hg19_v1_chr3_-_185826345 X76184	-647	-	TSC_hg19_v1_chr3_-_185655843 AK315632 NM_001243879 NM_004593	-171115	-	BC089411 AB209033 AK314192 D26135 TSC_hg19_v1_chr3_-_186080024 AK304440 NM_001080744 NM_001080745 NM_001346	252941	-	CU686840 AF161703 BC069478 AK314172 NM_017541	435147	-	TSC_hg19_v1_chr3_-_186285118 AK001422 BC025748	458115	-	BC007333|ETV5|2119|ets variant 5##NM_004454|ETV5|2119|ets variant 5##AK301878|ETV5|2119|ets variant 5##X76184|ETV5|2119|ets variant 5##AK315632|TRA2B|6434|transformer 2 beta homolog (Drosophila)##NM_001243879|TRA2B|6434|transformer 2 beta homolog (Drosophila)##NM_004593|TRA2B|6434|transformer 2 beta homolog (Drosophila)##BC089411|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AB209033|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AK314192|DGKG|1608|diacylglycerol kinase, gamma 90kDa##D26135|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AK304440|DGKG|1608|diacylglycerol kinase, gamma 90kDa##NM_001080744|DGKG|1608|diacylglycerol kinase, gamma 90kDa##NM_001080745|DGKG|1608|diacylglycerol kinase, gamma 90kDa##NM_001346|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AF161703|CRYGS|1427|crystallin, gamma S##BC069478|CRYGS|1427|crystallin, gamma S##AK314172|CRYGS|1427|crystallin, gamma S##NM_017541|CRYGS|1427|crystallin, gamma S##AK001422|TBCCD1|55171|TBCC domain containing 1##BC025748|TBCCD1|55171|TBCC domain containing 1	1.818556	denovo_WM_21:-10:0.937	denovo_WM_21:-43:0.205	denovo_WM_21:84:0.677
chr17	79650816	79650942	reg1000244.p1	9.740	+	BC063687 AK303526 TSC_hg19_v1_chr17_-_79650787 BC042380 AK304718 AK095847 HQ258109 BC105076 BC105078 NM_001040025	-25	-	TSC_hg19_v1_chr17_+_79633775 NM_199287 BC009369 CU679329	-17113	+	TSC_hg19_v1_chr17_-_79633636 AY007126	-17222	-	NM_004712 TSC_hg19_v1_chr17_+_79651020 AK294190 BC003565 U43895	112	+	TSC_hg19_v1_chr17_+_79651040 D84064	159	+	TSC_hg19_v1_chr17_+_79651042 AK303800	166	+	BC063687|ARL16|339231|ADP-ribosylation factor-like 16##AK303526|ARL16|339231|ADP-ribosylation factor-like 16##BC042380|ARL16|339231|ADP-ribosylation factor-like 16##AK304718|ARL16|339231|ADP-ribosylation factor-like 16##AK095847|ARL16|339231|ADP-ribosylation factor-like 16##HQ258109|ARL16|339231|ADP-ribosylation factor-like 16##BC105076|ARL16|339231|ADP-ribosylation factor-like 16##BC105078|ARL16|339231|ADP-ribosylation factor-like 16##NM_001040025|ARL16|339231|ADP-ribosylation factor-like 16##NM_199287|CCDC137|339230|coiled-coil domain containing 137##BC009369|CCDC137|339230|coiled-coil domain containing 137##AY007126|C17orf90|339229|chromosome 17 open reading frame 90##NM_004712|HGS|9146|hepatocyte growth factor-regulated tyrosine kinase substrate##AK294190|HGS|9146|hepatocyte growth factor-regulated tyrosine kinase substrate##BC003565|HGS|9146|hepatocyte growth factor-regulated tyrosine kinase substrate##U43895|HGS|9146|hepatocyte growth factor-regulated tyrosine kinase substrate##D84064|HGS|9146|hepatocyte growth factor-regulated tyrosine kinase substrate##AK303800|HGS|9146|hepatocyte growth factor-regulated tyrosine kinase substrate	2.039546	denovo_WM_21:5:0.978	denovo_WM_21:-23:0.960
chr22	36784305	36784448	reg1000104.p2	9.725	+	TSC_hg19_v1_chr22_-_36784062 NM_002473	-318	-	TSC_hg19_v1_chr22_-_36784013 AK304840 AK291609 AB191263	-368	-	AK131080 TSC_hg19_v1_chr22_-_36783982 BC049849	-397	-	TSC_hg19_v1_chr22_-_36877665 BC013726 BC050610 AF480262 NM_012473 CR456601	93303	-	TSC_hg19_v1_chr22_-_36903081 BC027716 BC015726	118682	-	AK025714 AK225347 TSC_hg19_v1_chr22_-_36903088 AK315555 NM_024955 BC040351 NM_001102371	118741	-	NM_002473|MYH9|4627|myosin, heavy chain 9, non-muscle##AK304840|MYH9|4627|myosin, heavy chain 9, non-muscle##AK291609|MYH9|4627|myosin, heavy chain 9, non-muscle##AB191263|MYH9|4627|myosin, heavy chain 9, non-muscle##AK131080|MYH9|4627|myosin, heavy chain 9, non-muscle##BC049849|MYH9|4627|myosin, heavy chain 9, non-muscle##BC013726|TXN2|25828|thioredoxin 2##BC050610|TXN2|25828|thioredoxin 2##AF480262|TXN2|25828|thioredoxin 2##NM_012473|TXN2|25828|thioredoxin 2##CR456601|TXN2|25828|thioredoxin 2##BC027716|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##BC015726|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##AK025714|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##AK225347|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##AK315555|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##NM_024955|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##BC040351|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##NM_001102371|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2	0.826362	denovo_WM_21:-7:0.826
chr19	12551890	12552026	reg1000350.p1	9.718	+	AK023025 BC032753 TSC_hg19_v1_chr19_-_12551836 AB011414 NM_005815	-92	-	AK299532 TSC_hg19_v1_chr19_-_12551771	-192	-	TSC_hg19_v1_chr19_-_12512035 BC057831 NM_001080821	-39904	-	BC136746 BC136751 AK290911 TSC_hg19_v1_chr19_-_12595603 BC036481	43618	-	TSC_hg19_v1_chr19_-_12595631 NM_152601	43670	-	BC136728 BC136729 TSC_hg19_v1_chr19_-_12662297 BC065023 AK095600 BC028367 AK092760 AX747711 BX647959 NM_144976	110315	-	AK023025|ZNF443|10224|zinc finger protein 443##BC032753|ZNF443|10224|zinc finger protein 443##AB011414|ZNF443|10224|zinc finger protein 443##NM_005815|ZNF443|10224|zinc finger protein 443##AK299532|ZNF443|10224|zinc finger protein 443##NM_001080821|ZNF799|90576|zinc finger protein 799##BC136746|ZNF709|163051|zinc finger protein 709##BC136751|ZNF709|163051|zinc finger protein 709##AK290911|ZNF709|163051|zinc finger protein 709##BC036481|ZNF709|163051|zinc finger protein 709##NM_152601|ZNF709|163051|zinc finger protein 709##BC136728|ZNF564|163050|zinc finger protein 564##BC136729|ZNF564|163050|zinc finger protein 564##BC065023|ZNF564|163050|zinc finger protein 564##BC028367|ZNF564|163050|zinc finger protein 564##AK092760|ZNF564|163050|zinc finger protein 564##BX647959|ZNF564|163050|zinc finger protein 564##NM_144976|ZNF564|163050|zinc finger protein 564	0.847964	denovo_WM_21:-5:0.848
chr5	151151068	151151253	reg1000047.p1	9.707	+	TSC_hg19_v1_chr5_-_151150991 AB593120	-187	-	TSC_hg19_v1_chr5_-_151138170 AK091843 AX747215 NM_004045 AK293063 BC112248 BC112250	-12945	-	TSC_hg19_v1_chr5_-_151066495 AK096969 AK299441 AK315591 D28381 BC072457 NM_003118	-84652	-	TSC_hg19_v1_chr5_+_151151479 BX648012 NM_005754 NM_198395	312	+	TSC_hg19_v1_chr5_+_151151490 AK303580	336	+	TSC_hg19_v1_chr5_+_151151512 AK309172 AK311635 AK312572 BC006997	352	+	AB593120|LOC100652758|100652758|uncharacterized LOC100652758##AK091843|ATOX1|475|ATX1 antioxidant protein 1 homolog (yeast)##NM_004045|ATOX1|475|ATX1 antioxidant protein 1 homolog (yeast)##AK293063|ATOX1|475|ATX1 antioxidant protein 1 homolog (yeast)##BC112248|ATOX1|475|ATX1 antioxidant protein 1 homolog (yeast)##BC112250|ATOX1|475|ATX1 antioxidant protein 1 homolog (yeast)##AK096969|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##AK299441|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##AK315591|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##D28381|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##BC072457|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##NM_003118|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##BX648012|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1##NM_005754|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1##NM_198395|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1##AK303580|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1##AK309172|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1##AK312572|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1##BC006997|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1	1.391504	denovo_WM_21:41:0.228	denovo_WM_21:63:0.381	denovo_WM_21:-104:0.782
chr11	62521629	62521806	reg1000317.p1	9.689	+	DQ892842 EU176736 TSC_hg19_v1_chr11_-_62521626 BC025249 AK027045 NM_024784	-123	-	TSC_hg19_v1_chr11_+_62495969 BC032123 NM_173810 AF451992 AF451993 BC053665	-25690	+	TSC_hg19_v1_chr11_-_62494930 BC029105	-26782	-	NM_002696 TSC_hg19_v1_chr11_+_62529028	7311	+	TSC_hg19_v1_chr11_+_62529051 AK312131 BC112162 BC112164 U20659 AB464043	7367	+	NM_006473 TSC_hg19_v1_chr11_+_62538867 AK289499 AK310054 AK301145 BC008785 AK314330	17116	+	DQ892842|ZBTB3|79842|zinc finger and BTB domain containing 3##EU176736|ZBTB3|79842|zinc finger and BTB domain containing 3##BC025249|ZBTB3|79842|zinc finger and BTB domain containing 3##AK027045|ZBTB3|79842|zinc finger and BTB domain containing 3##NM_024784|ZBTB3|79842|zinc finger and BTB domain containing 3##BC032123|TTC9C|283237|tetratricopeptide repeat domain 9C##NM_173810|TTC9C|283237|tetratricopeptide repeat domain 9C##AF451992|TTC9C|283237|tetratricopeptide repeat domain 9C##AF451993|TTC9C|283237|tetratricopeptide repeat domain 9C##BC053665|TTC9C|283237|tetratricopeptide repeat domain 9C##BC029105|HNRNPUL2|221092|heterogeneous nuclear ribonucleoprotein U-like 2##NM_002696|POLR2G|5436|polymerase (RNA) II (DNA directed) polypeptide G##AK312131|POLR2G|5436|polymerase (RNA) II (DNA directed) polypeptide G##BC112162|POLR2G|5436|polymerase (RNA) II (DNA directed) polypeptide G##BC112164|POLR2G|5436|polymerase (RNA) II (DNA directed) polypeptide G##U20659|POLR2G|5436|polymerase (RNA) II (DNA directed) polypeptide G##NM_006473|TAF6L|10629|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa##AK289499|TAF6L|10629|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa##AK310054|TAF6L|10629|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa##AK301145|TAF6L|10629|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa##BC008785|TAF6L|10629|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa##AK314330|TAF6L|10629|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa	0.476556	denovo_WM_21:-58:0.444
chr5	7869160	7869276	reg1000343.p2	9.681	+	TSC_hg19_v1_chr5_-_7869116 AK026927 AF161354 NM_024091	-86	-	BC053548 BC104204 BC104205 BC115361 NM_001089584	-17959	-	TSC_hg19_v1_chr5_+_7396319 NM_020546 AF410885 AK127036 BC111743 AK304041	-472950	+	AF121214 BC109216 BC109217 NM_002454 NM_024010 TSC_hg19_v1_chr5_+_7869273 AK308442 AK311663 AF025794 BC054816 BC035977	41	+	TSC_hg19_v1_chr5_+_7869306 BC062577	92	+	U52840 TSC_hg19_v1_chr5_-_9546188 AK307587 NM_003966	1676976	-	AK026927|FASTKD3|79072|FAST kinase domains 3##AF161354|FASTKD3|79072|FAST kinase domains 3##NM_024091|FASTKD3|79072|FAST kinase domains 3##BC053548|C5orf49|134121|chromosome 5 open reading frame 49##BC104204|C5orf49|134121|chromosome 5 open reading frame 49##BC104205|C5orf49|134121|chromosome 5 open reading frame 49##BC115361|C5orf49|134121|chromosome 5 open reading frame 49##NM_001089584|C5orf49|134121|chromosome 5 open reading frame 49##NM_020546|ADCY2|108|adenylate cyclase 2 (brain)##AF410885|ADCY2|108|adenylate cyclase 2 (brain)##AK127036|ADCY2|108|adenylate cyclase 2 (brain)##BC111743|ADCY2|108|adenylate cyclase 2 (brain)##AK304041|ADCY2|108|adenylate cyclase 2 (brain)##AF121214|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##BC109216|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##BC109217|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##NM_002454|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##NM_024010|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##AK308442|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##AK311663|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##AF025794|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##BC054816|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##BC035977|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##BC062577|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##U52840|SEMA5A|9037|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A##AK307587|SEMA5A|9037|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A##NM_003966|SEMA5A|9037|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	1.055612	denovo_WM_21:9:0.608	denovo_WM_21:-19:0.448
chr6	38670926	38671068	reg1000389.p1	9.678	+	TSC_hg19_v1_chr6_-_38670922 NM_006708	-60	-	AK312662 TSC_hg19_v1_chr6_-_38670921	-77	-	TSC_hg19_v1_chr6_-_38670918 AK293345 D13315	-80	-	AF527621 NM_001206927	12119	+	BC112126 BC113493 NM_002062 TSC_hg19_v1_chr6_+_39016556 U01104 L23503 AB463688 U01156 U01157	345589	+	AF086405 TSC_hg19_v1_chr6_-_39072506	401462	-	NM_006708|GLO1|2739|glyoxalase I##AK312662|GLO1|2739|glyoxalase I##AK293345|GLO1|2739|glyoxalase I##D13315|GLO1|2739|glyoxalase I##AF527621|DNAH8|1769|dynein, axonemal, heavy chain 8##NM_001206927|DNAH8|1769|dynein, axonemal, heavy chain 8##BC112126|GLP1R|2740|glucagon-like peptide 1 receptor##BC113493|GLP1R|2740|glucagon-like peptide 1 receptor##NM_002062|GLP1R|2740|glucagon-like peptide 1 receptor##U01104|GLP1R|2740|glucagon-like peptide 1 receptor##L23503|GLP1R|2740|glucagon-like peptide 1 receptor##U01156|GLP1R|2740|glucagon-like peptide 1 receptor##U01157|GLP1R|2740|glucagon-like peptide 1 receptor##AF086405|C6orf64|55776|chromosome 6 open reading frame 64	0.359842	denovo_WM_21:-30:0.276
chr22	35795966	35796124	reg1000287.p1	9.653	+	AF051791 TSC_hg19_v1_chr22_+_35779219	-16883	+	TSC_hg19_v1_chr22_+_35777088 AK313120 BC001491 M23041 AB528477 BT019785 CR541945 CR541968 CU013103 CU013391 DQ892310 DQ895510 JF323038	-18919	+	CR456505 NM_002133 TSC_hg19_v1_chr22_+_35777085 X06985	-18977	+	TSC_hg19_v1_chr22_+_35796134 NM_006739 AK223323 AK301121 D83986 AK130620 AK291136 AK298624 AK122853 AK312533	80	+	TSC_hg19_v1_chr22_+_35796157 BC000142 AK308343 CR456517 X74795 BC003656	126	+	TSC_hg19_v1_chr22_+_35796295 AB463121 CU013117 CU013405 CU674060 CU678562	317	+	AF051791|HMOX1|3162|heme oxygenase (decycling) 1##AK313120|HMOX1|3162|heme oxygenase (decycling) 1##BC001491|HMOX1|3162|heme oxygenase (decycling) 1##M23041|HMOX1|3162|heme oxygenase (decycling) 1##BT019785|HMOX1|3162|heme oxygenase (decycling) 1##CR541945|HMOX1|3162|heme oxygenase (decycling) 1##CR541968|HMOX1|3162|heme oxygenase (decycling) 1##CU013103|HMOX1|3162|heme oxygenase (decycling) 1##CU013391|HMOX1|3162|heme oxygenase (decycling) 1##DQ892310|HMOX1|3162|heme oxygenase (decycling) 1##DQ895510|HMOX1|3162|heme oxygenase (decycling) 1##JF323038|HMOX1|3162|heme oxygenase (decycling) 1##CR456505|HMOX1|3162|heme oxygenase (decycling) 1##NM_002133|HMOX1|3162|heme oxygenase (decycling) 1##X06985|HMOX1|3162|heme oxygenase (decycling) 1##NM_006739|MCM5|4174|minichromosome maintenance complex component 5##AK223323|MCM5|4174|minichromosome maintenance complex component 5##AK301121|MCM5|4174|minichromosome maintenance complex component 5##D83986|MCM5|4174|minichromosome maintenance complex component 5##AK130620|MCM5|4174|minichromosome maintenance complex component 5##AK291136|MCM5|4174|minichromosome maintenance complex component 5##AK298624|MCM5|4174|minichromosome maintenance complex component 5##AK122853|MCM5|4174|minichromosome maintenance complex component 5##AK312533|MCM5|4174|minichromosome maintenance complex component 5##BC000142|MCM5|4174|minichromosome maintenance complex component 5##AK308343|MCM5|4174|minichromosome maintenance complex component 5##CR456517|MCM5|4174|minichromosome maintenance complex component 5##X74795|MCM5|4174|minichromosome maintenance complex component 5##BC003656|MCM5|4174|minichromosome maintenance complex component 5##CU013117|MCM5|4174|minichromosome maintenance complex component 5##CU013405|MCM5|4174|minichromosome maintenance complex component 5	1.048596	denovo_WM_21:41:0.956
chr9	140095281	140095439	reg1000410.p1	9.645	+	TSC_hg19_v1_chr9_-_140095194 NM_001128228	-165	-	NM_003731 TSC_hg19_v1_chr9_+_140083127 BC000864 BC004118 Z96932 BT006766 CR542238 BC015827	-12234	+	TSC_hg19_v1_chr9_-_140083038 NM_013366	-12315	-	TSC_hg19_v1_chr9_-_140100101 AX775751 BC009283 BC009461 NM_053045 BC067786	4733	-	TSC_hg19_v1_chr9_+_140100154 NM_001144026 NM_001144027 NM_001144028 NM_014434 AK290026 AK026089 AK225995 AK074403 AF199509 BC015735 BC078668 AY077845 BC093782 BC111943 BC143229 AB463918 DQ892229 DQ895429	4809	+	NM_031297	20414	-	NM_001128228|TPRN|286262|taperin##NM_003731|SSNA1|8636|Sjogren syndrome nuclear autoantigen 1##BC000864|SSNA1|8636|Sjogren syndrome nuclear autoantigen 1##BC004118|SSNA1|8636|Sjogren syndrome nuclear autoantigen 1##Z96932|SSNA1|8636|Sjogren syndrome nuclear autoantigen 1##BT006766|SSNA1|8636|Sjogren syndrome nuclear autoantigen 1##CR542238|SSNA1|8636|Sjogren syndrome nuclear autoantigen 1##BC015827|SSNA1|8636|Sjogren syndrome nuclear autoantigen 1##NM_013366|ANAPC2|29882|anaphase promoting complex subunit 2##AX775751|TMEM203|94107|transmembrane protein 203##BC009283|TMEM203|94107|transmembrane protein 203##BC009461|TMEM203|94107|transmembrane protein 203##NM_053045|TMEM203|94107|transmembrane protein 203##BC067786|TMEM203|94107|transmembrane protein 203##NM_001144026|NDOR1|27158|NADPH dependent diflavin oxidoreductase 1##NM_001144027|NDOR1|27158|NADPH dependent diflavin oxidoreductase 1##NM_001144028|NDOR1|27158|NADPH dependent diflavin oxidoreductase 1##NM_014434|NDOR1|27158|NADPH dependent diflavin oxidoreductase 1##AK290026|NDOR1|27158|NADPH dependent diflavin oxidoreductase 1##AK026089|NDOR1|27158|NADPH dependent diflavin oxidoreductase 1##AK225995|NDOR1|27158|NADPH dependent diflavin oxidoreductase 1##AK074403|NDOR1|27158|NADPH dependent diflavin oxidoreductase 1##AF199509|NDOR1|27158|NADPH dependent diflavin oxidoreductase 1##BC015735|NDOR1|27158|NADPH dependent diflavin oxidoreductase 1##BC078668|NDOR1|27158|NADPH dependent diflavin oxidoreductase 1##AY077845|NDOR1|27158|NADPH dependent diflavin oxidoreductase 1##BC093782|NDOR1|27158|NADPH dependent diflavin oxidoreductase 1##BC111943|NDOR1|27158|NADPH dependent diflavin oxidoreductase 1##BC143229|NDOR1|27158|NADPH dependent diflavin oxidoreductase 1##DQ892229|NDOR1|27158|NADPH dependent diflavin oxidoreductase 1##DQ895429|NDOR1|27158|NADPH dependent diflavin oxidoreductase 1##NM_031297|RNF208|727800|ring finger protein 208	0.295187	denovo_WM_21:-6:0.275
chr14	20929935	20930120	reg1000177.p2	9.638	+	BC020947 BX161490 NM_001100814 NM_144568 TSC_hg19_v1_chr14_-_20929650 AK314021	-325	-	CU676778 CU678260 AM392745 AB528259 BC002867 AL137727 TSC_hg19_v1_chr14_-_20929594 BX248025	-484	-	TSC_hg19_v1_chr14_+_20923709 AB463413 BT007236 BT020133 DQ891814 DQ894998	-6273	+	NM_000270 BC106074 AK307340 AK307364 AK313490 X00737 TSC_hg19_v1_chr14_+_20937568 AK098544 BC104206 BC104207 AB591016	7582	+	BC133002 BC133028 AY665805 NM_001012975	48593	+	AY907670 EF061296 EF061297 EF061298 EF061299 EF061300 EF061301 EF061302 EF061303 EF061304 NM_001001673 NM_001110356 NM_001110357 NM_001110358 NM_001110359 NM_001110360 NM_001110361	99062	-	BC020947|TMEM55B|90809|transmembrane protein 55B##BX161490|TMEM55B|90809|transmembrane protein 55B##NM_001100814|TMEM55B|90809|transmembrane protein 55B##NM_144568|TMEM55B|90809|transmembrane protein 55B##AK314021|TMEM55B|90809|transmembrane protein 55B##AM392745|TMEM55B|90809|transmembrane protein 55B##BC002867|TMEM55B|90809|transmembrane protein 55B##AL137727|TMEM55B|90809|transmembrane protein 55B##BX248025|TMEM55B|90809|transmembrane protein 55B##BT007236|APEX1|328|APEX nuclease (multifunctional DNA repair enzyme) 1##BT020133|APEX1|328|APEX nuclease (multifunctional DNA repair enzyme) 1##DQ891814|APEX1|328|APEX nuclease (multifunctional DNA repair enzyme) 1##DQ894998|APEX1|328|APEX nuclease (multifunctional DNA repair enzyme) 1##NM_000270|PNP|4860|purine nucleoside phosphorylase##BC106074|PNP|4860|purine nucleoside phosphorylase##AK307340|PNP|4860|purine nucleoside phosphorylase##AK307364|PNP|4860|purine nucleoside phosphorylase##AK313490|PNP|4860|purine nucleoside phosphorylase##X00737|PNP|4860|purine nucleoside phosphorylase##AK098544|PNP|4860|purine nucleoside phosphorylase##BC104206|PNP|4860|purine nucleoside phosphorylase##BC104207|PNP|4860|purine nucleoside phosphorylase##BC133002|RNASE10|338879|ribonuclease, RNase A family, 10 (non-active)##BC133028|RNASE10|338879|ribonuclease, RNase A family, 10 (non-active)##AY665805|RNASE10|338879|ribonuclease, RNase A family, 10 (non-active)##NM_001012975|RNASE10|338879|ribonuclease, RNase A family, 10 (non-active)##AY907670|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##EF061296|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##EF061297|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##EF061298|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##EF061299|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##EF061300|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##EF061301|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##EF061302|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##EF061303|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##EF061304|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##NM_001001673|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##NM_001110356|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##NM_001110357|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##NM_001110358|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##NM_001110359|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##NM_001110360|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##NM_001110361|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)	1.807531	denovo_WM_21:-4:0.965	denovo_WM_21:-64:0.842
chr16	77224595	77224712	reg1000207.p1	9.628	+	NM_138994 AK057327 BC017266	-880898	+	AB051550 NM_033401 TSC_hg19_v1_chr16_+_76311298	-913413	+	AK307901 NM_018975 TSC_hg19_v1_chr16_+_75681715 AK000669 BC022428 BC004465 BC005841 BC016739 BC078171 AF289599 AF250393 AB464292 CU678732 AF262988	-1542946	+	TSC_hg19_v1_chr16_+_77224857 BC024277 NM_014940	189	+	AK023374 TSC_hg19_v1_chr16_+_77224865	232	+	TSC_hg19_v1_chr16_+_77225092 AK023896 AK296467	421	+	NM_138994|CNTNAP4|85445|contactin associated protein-like 4##AK057327|CNTNAP4|85445|contactin associated protein-like 4##BC017266|CNTNAP4|85445|contactin associated protein-like 4##AB051550|CNTNAP4|85445|contactin associated protein-like 4##NM_033401|CNTNAP4|85445|contactin associated protein-like 4##AK307901|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##NM_018975|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AK000669|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC022428|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC004465|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC005841|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC016739|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC078171|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AF289599|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AF250393|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AF262988|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC024277|MON1B|22879|MON1 homolog B (yeast)##NM_014940|MON1B|22879|MON1 homolog B (yeast)##AK023374|MON1B|22879|MON1 homolog B (yeast)##AK023896|MON1B|22879|MON1 homolog B (yeast)##AK296467|MON1B|22879|MON1 homolog B (yeast)	0.424778	
chr13	107188027	107188157	reg1000338.p1	9.619	+	CU686759 BC069342 BC074856 BC074857 U16797 U81262 AB529075 TSC_hg19_v1_chr13_-_107187325 BC105955 BC105956 BC105957 L38734 NM_004093	-743	-	NM_001161812 AY138546 BC121090 BC121091 DQ357223 DQ386869 DQ386870	-1069501	+	AY138547 NM_001161814 DQ343761 NM_172370 AY223901 AY170469 AY170470	-1069788	+	TSC_hg19_v1_chr13_-_107220486 BC050434 BC071587 AK304751 AK001016 AK303575 NM_018011	32393	-	NM_001080396	1331367	-	NM_002312 X83441	1679037	-	BC069342|EFNB2|1948|ephrin-B2##BC074856|EFNB2|1948|ephrin-B2##BC074857|EFNB2|1948|ephrin-B2##U16797|EFNB2|1948|ephrin-B2##U81262|EFNB2|1948|ephrin-B2##BC105955|EFNB2|1948|ephrin-B2##BC105956|EFNB2|1948|ephrin-B2##BC105957|EFNB2|1948|ephrin-B2##L38734|EFNB2|1948|ephrin-B2##NM_004093|EFNB2|1948|ephrin-B2##NM_001161812|DAOA|267012|D-amino acid oxidase activator##AY138546|DAOA|267012|D-amino acid oxidase activator##BC121090|DAOA|267012|D-amino acid oxidase activator##BC121091|DAOA|267012|D-amino acid oxidase activator##DQ357223|DAOA|267012|D-amino acid oxidase activator##DQ386869|DAOA|267012|D-amino acid oxidase activator##DQ386870|DAOA|267012|D-amino acid oxidase activator##AY138547|DAOA|267012|D-amino acid oxidase activator##NM_001161814|DAOA|267012|D-amino acid oxidase activator##DQ343761|DAOA|267012|D-amino acid oxidase activator##NM_172370|DAOA|267012|D-amino acid oxidase activator##AY223901|DAOA|267012|D-amino acid oxidase activator##AY170469|DAOA|267012|D-amino acid oxidase activator##AY170470|DAOA|267012|D-amino acid oxidase activator##BC050434|ARGLU1|55082|arginine and glutamate rich 1##BC071587|ARGLU1|55082|arginine and glutamate rich 1##AK001016|ARGLU1|55082|arginine and glutamate rich 1##NM_018011|ARGLU1|55082|arginine and glutamate rich 1##NM_001080396|FAM155A|728215|family with sequence similarity 155, member A##NM_002312|LIG4|3981|ligase IV, DNA, ATP-dependent##X83441|LIG4|3981|ligase IV, DNA, ATP-dependent	0.235943	
chr15	41576022	41576153	reg1000332.p1	9.614	+	TSC_hg19_v1_chr15_+_41523465 AK307060 AK312582 BC051815 BC031293 CR536539 CR542085	-52565	+	TSC_hg19_v1_chr15_+_41523431 AK299660 NM_007236	-52669	+	AK292524 AK302864 BC030628 NM_152596 TSC_hg19_v1_chr15_-_41522946	-53183	-	TSC_hg19_v1_chr15_+_41576202 BC037835 BX647764 AK172729 AY007106	103	+	TSC_hg19_v1_chr15_-_41624771 AF025441 BC015050 NM_007280	48702	-	NM_001243142 NM_001243143 NM_001243144 NM_016359 NM_018454	48804	+	AK307060|CHP|11261|calcium binding protein P22##AK312582|CHP|11261|calcium binding protein P22##BC031293|CHP|11261|calcium binding protein P22##CR536539|CHP|11261|calcium binding protein P22##CR542085|CHP|11261|calcium binding protein P22##AK299660|CHP|11261|calcium binding protein P22##NM_007236|CHP|11261|calcium binding protein P22##AK292524|EXD1|161829|exonuclease 3'-5' domain containing 1##AK302864|EXD1|161829|exonuclease 3'-5' domain containing 1##BC030628|EXD1|161829|exonuclease 3'-5' domain containing 1##NM_152596|EXD1|161829|exonuclease 3'-5' domain containing 1##BC037835|OIP5-AS1|729082|OIP5 antisense RNA 1 (non-protein coding)##BX647764|OIP5-AS1|729082|OIP5 antisense RNA 1 (non-protein coding)##AK172729|OIP5-AS1|729082|OIP5 antisense RNA 1 (non-protein coding)##AY007106|OIP5-AS1|729082|OIP5 antisense RNA 1 (non-protein coding)##AF025441|OIP5|11339|Opa interacting protein 5##BC015050|OIP5|11339|Opa interacting protein 5##NM_007280|OIP5|11339|Opa interacting protein 5##NM_001243142|NUSAP1|51203|nucleolar and spindle associated protein 1##NM_001243143|NUSAP1|51203|nucleolar and spindle associated protein 1##NM_001243144|NUSAP1|51203|nucleolar and spindle associated protein 1##NM_016359|NUSAP1|51203|nucleolar and spindle associated protein 1##NM_018454|NUSAP1|51203|nucleolar and spindle associated protein 1	0.0	
chr7	137687047	137687195	reg1000189.p2	9.613	+	TSC_hg19_v1_chr7_-_137686833 NM_001253775 NM_194071	-269	-	AK131517 TSC_hg19_v1_chr7_-_137686812	-309	-	AK293048 BC110813 TSC_hg19_v1_chr7_-_137686800 BC063666 AJ549092 AJ549387	-327	-	AK298421 NM_001190906 NM_001190907 NM_005989 Z28339 AK298428 BC130625 BC130627 AK289425 HQ258384	74097	+	TSC_hg19_v1_chr7_+_138145003 AK312610 AK075306 NM_003852 NM_015905 AK302679	457871	+	AF119042 BC028689 TSC_hg19_v1_chr7_+_138145183 AB528587 AF009353	458115	+	NM_001253775|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##NM_194071|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AK131517|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AK293048|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##BC110813|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##BC063666|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AJ549092|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AJ549387|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AK298421|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##NM_001190906|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##NM_001190907|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##NM_005989|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##Z28339|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##AK298428|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##BC130625|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##BC130627|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##AK289425|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##HQ258384|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##AK312610|TRIM24|8805|tripartite motif containing 24##AK075306|TRIM24|8805|tripartite motif containing 24##NM_003852|TRIM24|8805|tripartite motif containing 24##NM_015905|TRIM24|8805|tripartite motif containing 24##AK302679|TRIM24|8805|tripartite motif containing 24##AF119042|TRIM24|8805|tripartite motif containing 24##BC028689|TRIM24|8805|tripartite motif containing 24##AF009353|TRIM24|8805|tripartite motif containing 24	0.719369	denovo_WM_21:26:0.540
chr5	137549013	137549141	reg1000279.p1	9.593	+	AK304635 TSC_hg19_v1_chr5_-_137549034 NM_004661	-46	-	AF191341 BT009810 AB590268 DQ891686 DQ894870 TSC_hg19_v1_chr5_-_137549013 BC017713 AF053977 BC005258 BC010944 AK291610 AB011472 AK223250	-74	-	TSC_hg19_v1_chr5_+_137514857 AK296879 AK025790 AF153329 BC012999	-34262	+	AF051767 DQ890850 DQ894004 BC037951 AY358997 AK314022 AK297693 NM_001496 AY359037 TSC_hg19_v1_chr5_-_137610343	61151	-	M34065 BC019089 TSC_hg19_v1_chr5_-_137667469 NM_001790 NM_022809	118416	-	NM_001135647 TSC_hg19_v1_chr5_+_137673265 BC052993	124177	+	AK304635|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##NM_004661|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AF191341|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##BT009810|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##DQ891686|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##DQ894870|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##BC017713|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AF053977|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##BC005258|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##BC010944|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AK291610|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AB011472|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AK223250|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AK296879|KIF20A|10112|kinesin family member 20A##AK025790|KIF20A|10112|kinesin family member 20A##AF153329|KIF20A|10112|kinesin family member 20A##BC012999|KIF20A|10112|kinesin family member 20A##AF051767|GFRA3|2676|GDNF family receptor alpha 3##DQ890850|GFRA3|2676|GDNF family receptor alpha 3##DQ894004|GFRA3|2676|GDNF family receptor alpha 3##BC037951|GFRA3|2676|GDNF family receptor alpha 3##AY358997|GFRA3|2676|GDNF family receptor alpha 3##AK314022|GFRA3|2676|GDNF family receptor alpha 3##AK297693|GFRA3|2676|GDNF family receptor alpha 3##NM_001496|GFRA3|2676|GDNF family receptor alpha 3##AY359037|GFRA3|2676|GDNF family receptor alpha 3##M34065|CDC25C|995|cell division cycle 25 homolog C (S. pombe)##BC019089|CDC25C|995|cell division cycle 25 homolog C (S. pombe)##NM_001790|CDC25C|995|cell division cycle 25 homolog C (S. pombe)##NM_022809|CDC25C|995|cell division cycle 25 homolog C (S. pombe)##NM_001135647|FAM53C|51307|family with sequence similarity 53, member C##BC052993|FAM53C|51307|family with sequence similarity 53, member C	1.828748	denovo_WM_21:4:0.836	denovo_WM_21:33:0.653	denovo_WM_21:-47:0.340
chr11	59383697	59383881	reg1000007.p2	9.574	+	AF185696 M86917 NM_002556	-173	-	TSC_hg19_v1_chr11_-_59383232 BC011581	-579	-	TSC_hg19_v1_chr11_-_59383172 BC051350 BC063121	-620	-	AM392959 AB527197 TSC_hg19_v1_chr11_-_59436483 AL831992 AK127943	52636	-	TSC_hg19_v1_chr11_-_59436490 NM_152716	52718	-	NM_001005324 AB529286	97528	-	AF185696|OSBP|5007|oxysterol binding protein##M86917|OSBP|5007|oxysterol binding protein##NM_002556|OSBP|5007|oxysterol binding protein##BC011581|OSBP|5007|oxysterol binding protein##BC051350|OSBP|5007|oxysterol binding protein##BC063121|OSBP|5007|oxysterol binding protein##AM392959|PATL1|219988|protein associated with topoisomerase II homolog 1 (yeast)##AL831992|PATL1|219988|protein associated with topoisomerase II homolog 1 (yeast)##AK127943|PATL1|219988|protein associated with topoisomerase II homolog 1 (yeast)##NM_152716|PATL1|219988|protein associated with topoisomerase II homolog 1 (yeast)##NM_001005324|OR10V1|390201|olfactory receptor, family 10, subfamily V, member 1	1.381973	denovo_WM_21:-43:0.880	denovo_WM_21:93:0.426
chr22	38240445	38240584	reg1000334.p2	9.561	+	TSC_hg19_v1_chr22_-_38240342 NM_138797	-168	-	CU013021 CU013309 AB462948 CU688190 BC014641 TSC_hg19_v1_chr22_-_38240313 CR456471 BC066909	-232	-	AF073799 NM_003614 AF067733 AY587582	-21114	+	CR456436 AB463035 CU013035 CU013323 NM_001242923 NM_016091 TSC_hg19_v1_chr22_+_38245395	4847	+	TSC_hg19_v1_chr22_+_38245423 AK315533 AK222496 AK293629 AF083243	4902	+	AK129648 AK222529 TSC_hg19_v1_chr22_+_38245425 AK301323 AK302346	4913	+	NM_138797|ANKRD54|129138|ankyrin repeat domain 54##BC014641|ANKRD54|129138|ankyrin repeat domain 54##CR456471|ANKRD54|129138|ankyrin repeat domain 54##BC066909|ANKRD54|129138|ankyrin repeat domain 54##AF073799|GALR3|8484|galanin receptor 3##NM_003614|GALR3|8484|galanin receptor 3##AF067733|GALR3|8484|galanin receptor 3##AY587582|GALR3|8484|galanin receptor 3##CR456436|EIF3L|51386|eukaryotic translation initiation factor 3, subunit L##CU013035|EIF3L|51386|eukaryotic translation initiation factor 3, subunit L##CU013323|EIF3L|51386|eukaryotic translation initiation factor 3, subunit L##NM_001242923|EIF3L|51386|eukaryotic translation initiation factor 3, subunit L##NM_016091|EIF3L|51386|eukaryotic translation initiation factor 3, subunit L##AK315533|EIF3L|51386|eukaryotic translation initiation factor 3, subunit L##AK222496|EIF3L|51386|eukaryotic translation initiation factor 3, subunit L##AK293629|EIF3L|51386|eukaryotic translation initiation factor 3, subunit L##AF083243|EIF3L|51386|eukaryotic translation initiation factor 3, subunit L##AK129648|EIF3L|51386|eukaryotic translation initiation factor 3, subunit L##AK222529|EIF3L|51386|eukaryotic translation initiation factor 3, subunit L##AK301323|EIF3L|51386|eukaryotic translation initiation factor 3, subunit L##AK302346|EIF3L|51386|eukaryotic translation initiation factor 3, subunit L	1.405068	denovo_WM_21:16:0.232	denovo_WM_21:-61:0.974
chr7	132937677	132937816	reg1000324.p2	9.561	+	TSC_hg19_v1_chr7_-_132766851 BC011596 BC014839 AK129533	-170900	-	AB528286 TSC_hg19_v1_chr7_-_132766813 AK294071 AK000427 NM_017812 AK310236	-170982	-	BC028744 NM_181775	-604300	-	TSC_hg19_v1_chr7_+_132937838 NM_001037126 NM_021807 AF380839 AK027688 AL831989 AK298191 BC067263 BC026174 CU693148 AB051486	103	+	BC104897 BC104899 AK057348 NM_144648	874331	+	AJ971941 TSC_hg19_v1_chr7_-_134001622 AK075368 BC008413 AJ315497 AJ315498 AK307621 AK027603 AK222874	1063877	-	BC011596|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##BC014839|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##AK129533|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##AK294071|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##AK000427|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##NM_017812|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##AK310236|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##BC028744|PLXNA4|91584|plexin A4##NM_181775|PLXNA4|91584|plexin A4##NM_001037126|EXOC4|60412|exocyst complex component 4##NM_021807|EXOC4|60412|exocyst complex component 4##AF380839|EXOC4|60412|exocyst complex component 4##AK027688|EXOC4|60412|exocyst complex component 4##AL831989|EXOC4|60412|exocyst complex component 4##AK298191|EXOC4|60412|exocyst complex component 4##BC067263|EXOC4|60412|exocyst complex component 4##BC026174|EXOC4|60412|exocyst complex component 4##AB051486|EXOC4|60412|exocyst complex component 4##BC104897|LRGUK|136332|leucine-rich repeats and guanylate kinase domain containing##BC104899|LRGUK|136332|leucine-rich repeats and guanylate kinase domain containing##AK057348|LRGUK|136332|leucine-rich repeats and guanylate kinase domain containing##NM_144648|LRGUK|136332|leucine-rich repeats and guanylate kinase domain containing##AJ971941|SLC35B4|84912|solute carrier family 35, member B4##AK075368|SLC35B4|84912|solute carrier family 35, member B4##BC008413|SLC35B4|84912|solute carrier family 35, member B4##AJ315497|SLC35B4|84912|solute carrier family 35, member B4##AJ315498|SLC35B4|84912|solute carrier family 35, member B4##AK307621|SLC35B4|84912|solute carrier family 35, member B4##AK027603|SLC35B4|84912|solute carrier family 35, member B4##AK222874|SLC35B4|84912|solute carrier family 35, member B4	0.227048	denovo_WM_21:-14:0.206
chr17	36908891	36909018	reg1000319.p1	9.557	+	TSC_hg19_v1_chr17_-_36906030 BX647429	-2905	-	TSC_hg19_v1_chr17_-_36904564 BC024255 NM_007144	-4387	-	TSC_hg19_v1_chr17_+_36886574 NM_001136498 AK097047 BC062294	-22322	+	TSC_hg19_v1_chr17_+_36909011 NM_002795 BC013008 BC002570 D26598	76	+	BT019614 AB529089 CU693266 TSC_hg19_v1_chr17_-_36955807 BC027459	46834	-	TSC_hg19_v1_chr17_-_36956177 NM_003559 U85245	47228	-	BX647429|PCGF2|7703|polycomb group ring finger 2##BC024255|PCGF2|7703|polycomb group ring finger 2##NM_007144|PCGF2|7703|polycomb group ring finger 2##NM_001136498|CISD3|284106|CDGSH iron sulfur domain 3##AK097047|CISD3|284106|CDGSH iron sulfur domain 3##BC062294|CISD3|284106|CDGSH iron sulfur domain 3##NM_002795|PSMB3|5691|proteasome (prosome, macropain) subunit, beta type, 3##BC013008|PSMB3|5691|proteasome (prosome, macropain) subunit, beta type, 3##D26598|PSMB3|5691|proteasome (prosome, macropain) subunit, beta type, 3##BT019614|PIP4K2B|8396|phosphatidylinositol-5-phosphate 4-kinase, type II, beta##BC027459|PIP4K2B|8396|phosphatidylinositol-5-phosphate 4-kinase, type II, beta##NM_003559|PIP4K2B|8396|phosphatidylinositol-5-phosphate 4-kinase, type II, beta##U85245|PIP4K2B|8396|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	1.20534	denovo_WM_21:-11:0.608	denovo_WM_21:30:0.598
chr19	28047764	28047868	reg1000239.p1	9.547	+	TSC_hg19_v1_chr19_+_24269988 AF054180 NM_203282 BC056243 AK291286 BC043147 BC139749	-3777847	+	TSC_hg19_v1_chr19_+_24216256 AK092150 AK092080 AK303431	-3831560	+	TSC_hg19_v1_chr19_+_24097711 NM_001244038 AX721133 BC046415 AB593087	-3950122	+	TSC_hg19_v1_chr19_+_28284377 BC024732	236572	+	TSC_hg19_v1_chr19_-_28284831 AK311452	237017	-	TSC_hg19_v1_chr19_+_28284946 AK095009	237112	+	AF054180|ZNF254|9534|zinc finger protein 254##NM_203282|ZNF254|9534|zinc finger protein 254##BC056243|ZNF254|9534|zinc finger protein 254##AK291286|ZNF254|9534|zinc finger protein 254##BC043147|ZNF254|9534|zinc finger protein 254##BC139749|ZNF254|9534|zinc finger protein 254##AK303431|ZNF254|9534|zinc finger protein 254##NM_001244038|ZNF726|730087|zinc finger protein 726##BC046415|ZNF726|730087|zinc finger protein 726##AK311452|LOC148189|148189|uncharacterized LOC148189	0.0	
chr1	28562472	28562619	reg1000335.p1	9.519	+	TSC_hg19_v1_chr1_-_28559538 BC033159 AK300797 AF083190 BX538122 CR456900 NM_014280	-3014	-	S52624 AK292053 NM_001164721 NM_001164722	-42133	-	NM_000952 NM_001164723	-59091	-	TSC_hg19_v1_chr1_+_28562634 NM_016311 NM_178190 NM_178191 AK316600 BC009677 AK000934 AB029042 BT009849 CR457097 EU832478 EU832558 BC017562 BC004955	104	+	TSC_hg19_v1_chr1_+_28586034 NM_031459 BC013304 AY123223 BC033719 AL136551 AK315710 DQ892827 DQ896073 EU831582 EU831667 AB529110 CU680558	23613	+	NM_001127350 NM_017638 AK296130 AK000052 AB107222 BC002694 TSC_hg19_v1_chr1_+_28655576	93002	+	BC033159|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##AK300797|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##AF083190|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##BX538122|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##CR456900|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##NM_014280|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##S52624|PTAFR|5724|platelet-activating factor receptor##AK292053|PTAFR|5724|platelet-activating factor receptor##NM_001164721|PTAFR|5724|platelet-activating factor receptor##NM_001164722|PTAFR|5724|platelet-activating factor receptor##NM_000952|PTAFR|5724|platelet-activating factor receptor##NM_001164723|PTAFR|5724|platelet-activating factor receptor##NM_016311|ATPIF1|93974|ATPase inhibitory factor 1##NM_178190|ATPIF1|93974|ATPase inhibitory factor 1##NM_178191|ATPIF1|93974|ATPase inhibitory factor 1##AK316600|ATPIF1|93974|ATPase inhibitory factor 1##BC009677|ATPIF1|93974|ATPase inhibitory factor 1##AK000934|ATPIF1|93974|ATPase inhibitory factor 1##AB029042|ATPIF1|93974|ATPase inhibitory factor 1##BT009849|ATPIF1|93974|ATPase inhibitory factor 1##CR457097|ATPIF1|93974|ATPase inhibitory factor 1##EU832478|ATPIF1|93974|ATPase inhibitory factor 1##EU832558|ATPIF1|93974|ATPase inhibitory factor 1##BC017562|ATPIF1|93974|ATPase inhibitory factor 1##BC004955|ATPIF1|93974|ATPase inhibitory factor 1##NM_031459|SESN2|83667|sestrin 2##BC013304|SESN2|83667|sestrin 2##AY123223|SESN2|83667|sestrin 2##BC033719|SESN2|83667|sestrin 2##AL136551|SESN2|83667|sestrin 2##AK315710|SESN2|83667|sestrin 2##DQ892827|SESN2|83667|sestrin 2##DQ896073|SESN2|83667|sestrin 2##EU831582|SESN2|83667|sestrin 2##EU831667|SESN2|83667|sestrin 2##NM_001127350|MED18|54797|mediator complex subunit 18##NM_017638|MED18|54797|mediator complex subunit 18##AK296130|MED18|54797|mediator complex subunit 18##AK000052|MED18|54797|mediator complex subunit 18##AB107222|MED18|54797|mediator complex subunit 18##BC002694|MED18|54797|mediator complex subunit 18	0.014247	
chr12	56211717	56211841	reg1000130.p2	9.499	+	TSC_hg19_v1_chr12_-_56211511 NM_033082	-246	-	TSC_hg19_v1_chr12_-_56211507 AF161434 BC007099 BC093051 AK222719 AK290508	-273	-	AB463939 AF486281 TSC_hg19_v1_chr12_-_56211499	-287	-	AF395707 NM_014182 TSC_hg19_v1_chr12_+_56211824 AK314046 AF173375 AF161509	8	+	TSC_hg19_v1_chr12_+_56211873 AK223180	91	+	AK057354 BC117146 BC117148 TSC_hg19_v1_chr12_-_56223333 BC050271 AY188447 EF560741	11494	-	NM_033082|SARNP|84324|SAP domain containing ribonucleoprotein##AF161434|SARNP|84324|SAP domain containing ribonucleoprotein##BC007099|SARNP|84324|SAP domain containing ribonucleoprotein##BC093051|SARNP|84324|SAP domain containing ribonucleoprotein##AK222719|SARNP|84324|SAP domain containing ribonucleoprotein##AK290508|SARNP|84324|SAP domain containing ribonucleoprotein##AF486281|SARNP|84324|SAP domain containing ribonucleoprotein##AF395707|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##NM_014182|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##AK314046|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##AF173375|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##AF161509|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##AK223180|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##AK057354|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##BC117146|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##BC117148|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##AY188447|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##EF560741|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14	0.644106	denovo_WM_21:-11:0.499
chr6	80247154	80247298	reg1000347.p1	9.478	+	TSC_hg19_v1_chr6_-_80247114 AK299314 BX648161 BC050327 NM_001122769 NM_181714	-97	-	TSC_hg19_v1_chr6_-_79944400 AK315391 AY043282 NM_001201362 NM_001201363 NM_004242 NM_138730	-302801	-	L40357 TSC_hg19_v1_chr6_-_79944391 AF401520 AF274949 BC009529	-302868	-	TSC_hg19_v1_chr6_+_80341019 AF340151 NM_031469 BC109043 BC109044 AK311757 BC040489 AK074506 BC052987 BC060799 BC070059 AJ297972	93848	+	NM_001243308	332910	-	TSC_hg19_v1_chr6_-_80656870 CU691582 DQ891229 AF277094 BC038506 AY037298 AK310625 AK312511 AK055277 DQ426871 NM_022726	409866	-	AK299314|LCA5|167691|Leber congenital amaurosis 5##BX648161|LCA5|167691|Leber congenital amaurosis 5##BC050327|LCA5|167691|Leber congenital amaurosis 5##NM_001122769|LCA5|167691|Leber congenital amaurosis 5##NM_181714|LCA5|167691|Leber congenital amaurosis 5##AK315391|HMGN3|9324|high mobility group nucleosomal binding domain 3##AY043282|HMGN3|9324|high mobility group nucleosomal binding domain 3##NM_001201362|HMGN3|9324|high mobility group nucleosomal binding domain 3##NM_001201363|HMGN3|9324|high mobility group nucleosomal binding domain 3##NM_004242|HMGN3|9324|high mobility group nucleosomal binding domain 3##NM_138730|HMGN3|9324|high mobility group nucleosomal binding domain 3##L40357|HMGN3|9324|high mobility group nucleosomal binding domain 3##AF401520|HMGN3|9324|high mobility group nucleosomal binding domain 3##AF274949|HMGN3|9324|high mobility group nucleosomal binding domain 3##BC009529|HMGN3|9324|high mobility group nucleosomal binding domain 3##AF340151|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##NM_031469|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC109043|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC109044|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##AK311757|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC040489|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##AK074506|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC052987|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC060799|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC070059|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##AJ297972|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##NM_001243308|C6orf7|89758|chromosome 6 open reading frame 7##DQ891229|ELOVL4|6785|ELOVL fatty acid elongase 4##AF277094|ELOVL4|6785|ELOVL fatty acid elongase 4##BC038506|ELOVL4|6785|ELOVL fatty acid elongase 4##AY037298|ELOVL4|6785|ELOVL fatty acid elongase 4##AK310625|ELOVL4|6785|ELOVL fatty acid elongase 4##AK312511|ELOVL4|6785|ELOVL fatty acid elongase 4##AK055277|ELOVL4|6785|ELOVL fatty acid elongase 4##DQ426871|ELOVL4|6785|ELOVL fatty acid elongase 4##NM_022726|ELOVL4|6785|ELOVL fatty acid elongase 4	2.364791	denovo_WM_21:2:0.921	denovo_WM_21:-27:0.972	denovo_WM_21:-53:0.233	denovo_WM_21:55:0.239
chr16	28962121	28962253	reg1000224.p1	9.464	+	NM_001178098 NM_001770 BC006338 AK301363 AK313577 BC052294 M21097 X13312 AK307295 M28170 DQ893016 DQ896261 AK130657 AK301167 AK304456	-18885	+	AY129017 TSC_hg19_v1_chr16_-_28936536 AK295229 BC046118 AK026935 NM_024816 BC058900	-25679	-	TSC_hg19_v1_chr16_+_28891234 AK128456	-70884	+	BC068007 BC101741 BC112182 TSC_hg19_v1_chr16_+_28962327 AF458593 NM_032815 AK074761 AK304172	51	+	TSC_hg19_v1_chr16_+_28986106 BC038961 NM_001142448 NM_001142449 NM_001142450 NM_001142451 NM_032038 AK095677 AK289787 BC065235 AF370423 BC047741 AB209402 AL390215 AF212371 BC008325 AM392778 AM393748 AB528362 CU678917 BC006156	24067	+	BC011563 NM_001014989	33959	+	NM_001178098|CD19|930|CD19 molecule##NM_001770|CD19|930|CD19 molecule##BC006338|CD19|930|CD19 molecule##AK301363|CD19|930|CD19 molecule##AK313577|CD19|930|CD19 molecule##BC052294|CD19|930|CD19 molecule##M21097|CD19|930|CD19 molecule##X13312|CD19|930|CD19 molecule##AK307295|CD19|930|CD19 molecule##DQ893016|CD19|930|CD19 molecule##DQ896261|CD19|930|CD19 molecule##AK130657|CD19|930|CD19 molecule##AK301167|CD19|930|CD19 molecule##AK304456|CD19|930|CD19 molecule##AK295229|RABEP2|79874|rabaptin, RAB GTPase binding effector protein 2##BC046118|RABEP2|79874|rabaptin, RAB GTPase binding effector protein 2##AK026935|RABEP2|79874|rabaptin, RAB GTPase binding effector protein 2##NM_024816|RABEP2|79874|rabaptin, RAB GTPase binding effector protein 2##BC058900|RABEP2|79874|rabaptin, RAB GTPase binding effector protein 2##AK128456|ATP2A1|487|ATPase, Ca++ transporting, cardiac muscle, fast twitch 1##BC068007|NFATC2IP|84901|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein##BC101741|NFATC2IP|84901|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein##BC112182|NFATC2IP|84901|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein##AF458593|NFATC2IP|84901|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein##NM_032815|NFATC2IP|84901|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein##AK074761|NFATC2IP|84901|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein##AK304172|NFATC2IP|84901|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein##BC038961|SPNS1|83985|spinster homolog 1 (Drosophila)##NM_001142448|SPNS1|83985|spinster homolog 1 (Drosophila)##NM_001142449|SPNS1|83985|spinster homolog 1 (Drosophila)##NM_001142450|SPNS1|83985|spinster homolog 1 (Drosophila)##NM_001142451|SPNS1|83985|spinster homolog 1 (Drosophila)##NM_032038|SPNS1|83985|spinster homolog 1 (Drosophila)##AK095677|SPNS1|83985|spinster homolog 1 (Drosophila)##AK289787|SPNS1|83985|spinster homolog 1 (Drosophila)##BC065235|SPNS1|83985|spinster homolog 1 (Drosophila)##AF370423|SPNS1|83985|spinster homolog 1 (Drosophila)##BC047741|SPNS1|83985|spinster homolog 1 (Drosophila)##AL390215|SPNS1|83985|spinster homolog 1 (Drosophila)##AF212371|SPNS1|83985|spinster homolog 1 (Drosophila)##BC008325|SPNS1|83985|spinster homolog 1 (Drosophila)##AM392778|SPIN1|10927|spindlin 1##AM393748|SPIN1|10927|spindlin 1##BC006156|SPNS1|83985|spinster homolog 1 (Drosophila)##BC011563|LAT|27040|linker for activation of T cells##NM_001014989|LAT|27040|linker for activation of T cells	1.43771	denovo_WM_21:1:0.797	denovo_WM_21:-107:0.612
chr1	153700274	153700413	reg1000312.p1	9.456	+	TSC_hg19_v1_chr1_+_153651222 BC063304 AK025024 NM_000906 X15357	-49047	+	TSC_hg19_v1_chr1_-_153643490 NM_004515	-56853	-	TSC_hg19_v1_chr1_-_153643464 AK313364 AK310615	-56880	-	TSC_hg19_v1_chr1_+_153700548 BX640950 CR749376 CR627233 BC116458 AK290025 CR749212 BX640786 NM_023015	210	+	BC003041 BC009916 NM_024330 AK075377 TSC_hg19_v1_chr1_+_153747897 AK123997 AY358409 AK074134 DQ893429 DQ895951 AK027499 BC029792	47523	+	AK094665 NM_020699 TSC_hg19_v1_chr1_-_153895452	195108	-	BC063304|NPR1|4881|natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A)##AK025024|NPR1|4881|natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A)##NM_000906|NPR1|4881|natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A)##X15357|NPR1|4881|natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A)##NM_004515|ILF2|3608|interleukin enhancer binding factor 2, 45kDa##AK313364|ILF2|3608|interleukin enhancer binding factor 2, 45kDa##AK310615|ILF2|3608|interleukin enhancer binding factor 2, 45kDa##BX640950|INTS3|65123|integrator complex subunit 3##CR749376|INTS3|65123|integrator complex subunit 3##CR627233|INTS3|65123|integrator complex subunit 3##BC116458|INTS3|65123|integrator complex subunit 3##AK290025|INTS3|65123|integrator complex subunit 3##CR749212|INTS3|65123|integrator complex subunit 3##BX640786|INTS3|65123|integrator complex subunit 3##NM_023015|INTS3|65123|integrator complex subunit 3##BC003041|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##BC009916|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##NM_024330|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK075377|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK123997|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AY358409|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK074134|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##DQ893429|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##DQ895951|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK027499|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##BC029792|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK094665|GATAD2B|57459|GATA zinc finger domain containing 2B##NM_020699|GATAD2B|57459|GATA zinc finger domain containing 2B	0.0	
chr4	123653729	123653864	reg1000371.p1	9.448	+	CU688120 CU688122 DQ645417 BC069124 BC066258 BC066259 BC066260 BC066261 BC066262 NM_001207006 NM_021803 AF254069	-111608	-	AF532913 AY283686 AY523040 DQ231169 S77835 AB451325 AB451454 AB591003 CU688118 DQ861285 AF228636 BC066254 BC066255 BC066256 BC066257 BC070338 S77834 U25676 V00564 NM_000586 X01586	-276210	-	NM_001159285 NM_001159295 BC040229 AK093297 AX748040	-353164	+	AK123553 NM_001178007 NM_152618 BC055426 TSC_hg19_v1_chr4_+_123653916 BX538148	109	+	TSC_hg19_v1_chr4_+_123747833 J04513 NM_002006 BC111737 BC118573 BC118654	94048	+	TSC_hg19_v1_chr4_+_123747985 M27968	94170	+	DQ645417|IL21|59067|interleukin 21##BC069124|IL21|59067|interleukin 21##BC066258|IL21|59067|interleukin 21##BC066259|IL21|59067|interleukin 21##BC066260|IL21|59067|interleukin 21##BC066261|IL21|59067|interleukin 21##BC066262|IL21|59067|interleukin 21##NM_001207006|IL21|59067|interleukin 21##NM_021803|IL21|59067|interleukin 21##AF254069|IL21|59067|interleukin 21##AF532913|IL2|3558|interleukin 2##AY283686|IL2|3558|interleukin 2##AY523040|IL2|3558|interleukin 2##DQ231169|IL2|3558|interleukin 2##S77835|IL2|3558|interleukin 2##AB451325|IL2|3558|interleukin 2##AB451454|IL2|3558|interleukin 2##DQ861285|IL2|3558|interleukin 2##AF228636|IL2|3558|interleukin 2##BC066254|IL2|3558|interleukin 2##BC066255|IL2|3558|interleukin 2##BC066256|IL2|3558|interleukin 2##BC066257|IL2|3558|interleukin 2##BC070338|IL2|3558|interleukin 2##S77834|IL2|3558|interleukin 2##U25676|IL2|3558|interleukin 2##V00564|IL2|3558|interleukin 2##NM_000586|IL2|3558|interleukin 2##X01586|IL2|3558|interleukin 2##NM_001159285|ADAD1|132612|adenosine deaminase domain containing 1 (testis-specific)##NM_001159295|ADAD1|132612|adenosine deaminase domain containing 1 (testis-specific)##BC040229|ADAD1|132612|adenosine deaminase domain containing 1 (testis-specific)##AK093297|ADAD1|132612|adenosine deaminase domain containing 1 (testis-specific)##AK123553|BBS12|166379|Bardet-Biedl syndrome 12##NM_001178007|BBS12|166379|Bardet-Biedl syndrome 12##NM_152618|BBS12|166379|Bardet-Biedl syndrome 12##BC055426|BBS12|166379|Bardet-Biedl syndrome 12##BX538148|BBS12|166379|Bardet-Biedl syndrome 12##J04513|FGF2|2247|fibroblast growth factor 2 (basic)##NM_002006|FGF2|2247|fibroblast growth factor 2 (basic)##BC111737|FGF2|2247|fibroblast growth factor 2 (basic)##M27968|FGF2|2247|fibroblast growth factor 2 (basic)	0.206147	denovo_WM_21:-51:0.206
chr17	39943130	39943286	reg1000305.p2	9.440	+	TSC_hg19_v1_chr17_-_39942964 AK226051 M23410 Z68228 BC000441 AK293479 NM_002230 NM_021991	-225	-	DQ891420 DQ894594 AY243535 TSC_hg19_v1_chr17_-_39928132	-15087	-	TSC_hg19_v1_chr17_-_39928100 AB384746 CU680086	-15106	-	AY295765 TSC_hg19_v1_chr17_-_39967969	24735	-	TSC_hg19_v1_chr17_-_39968202 DQ893598 EU831442 EU831534 CU674526 U47621 BC011701 AK222945 BC007942 AK301301 BC001047 AJ250583	24992	-	NM_006455	25242	-	AK226051|JUP|3728|junction plakoglobin##M23410|JUP|3728|junction plakoglobin##Z68228|JUP|3728|junction plakoglobin##BC000441|JUP|3728|junction plakoglobin##NM_002230|JUP|3728|junction plakoglobin##NM_021991|JUP|3728|junction plakoglobin##DQ891420|JUP|3728|junction plakoglobin##DQ894594|JUP|3728|junction plakoglobin##AY243535|JUP|3728|junction plakoglobin##DQ893598|LEPREL4|10609|leprecan-like 4##EU831442|LEPREL4|10609|leprecan-like 4##EU831534|LEPREL4|10609|leprecan-like 4##U47621|LEPREL4|10609|leprecan-like 4##BC011701|LEPREL4|10609|leprecan-like 4##AK222945|LEPREL4|10609|leprecan-like 4##BC007942|LEPREL4|10609|leprecan-like 4##AK301301|LEPREL4|10609|leprecan-like 4##BC001047|LEPREL4|10609|leprecan-like 4##AJ250583|LEPREL4|10609|leprecan-like 4##NM_006455|LEPREL4|10609|leprecan-like 4	2.146278	denovo_WM_21:46:0.705	denovo_WM_21:-54:0.647	denovo_WM_21:86:0.794
chr19	8478060	8478175	reg1000318.p1	9.436	+	TSC_hg19_v1_chr19_-_8455589 BC014506	-22545	-	TSC_hg19_v1_chr19_+_8455285 AK297498 AK225642 AK225036 D38516 X79780 BC110081 AB590872 AF498947 BT019535 BT019536 CR536494 CR541691 GQ129215 GQ129216	-22835	+	TSC_hg19_v1_chr19_+_8455246 AK312994	-22866	+	TSC_hg19_v1_chr19_+_8478188 NM_001005415 NM_001005416 NM_016496 AF151074	111	+	TSC_hg19_v1_chr19_+_8509599 AF061832	31505	+	NM_005968 NM_031203 TSC_hg19_v1_chr19_+_8509858 BC000138 AK293612	31713	+	BC014506|LOC100507567|100507567|uncharacterized LOC100507567##AK297498|RAB11B|9230|RAB11B, member RAS oncogene family##AK225642|RAB11B|9230|RAB11B, member RAS oncogene family##AK225036|RAB11B|9230|RAB11B, member RAS oncogene family##D38516|RAB11B|9230|RAB11B, member RAS oncogene family##X79780|RAB11B|9230|RAB11B, member RAS oncogene family##BC110081|RAB11B|9230|RAB11B, member RAS oncogene family##AF498947|RAB11B|9230|RAB11B, member RAS oncogene family##BT019535|RAB11B|9230|RAB11B, member RAS oncogene family##BT019536|RAB11B|9230|RAB11B, member RAS oncogene family##CR536494|RAB11B|9230|RAB11B, member RAS oncogene family##CR541691|RAB11B|9230|RAB11B, member RAS oncogene family##GQ129215|RAB11B|9230|RAB11B, member RAS oncogene family##GQ129216|RAB11B|9230|RAB11B, member RAS oncogene family##AK312994|RAB11B|9230|RAB11B, member RAS oncogene family##NM_001005415|MARCH2|51257|membrane-associated ring finger (C3HC4) 2##NM_001005416|MARCH2|51257|membrane-associated ring finger (C3HC4) 2##NM_016496|MARCH2|51257|membrane-associated ring finger (C3HC4) 2##AF151074|MARCH2|51257|membrane-associated ring finger (C3HC4) 2##AF061832|HNRNPM|4670|heterogeneous nuclear ribonucleoprotein M##NM_005968|HNRNPM|4670|heterogeneous nuclear ribonucleoprotein M##NM_031203|HNRNPM|4670|heterogeneous nuclear ribonucleoprotein M##BC000138|HNRNPM|4670|heterogeneous nuclear ribonucleoprotein M	0.115351	
chr9	130159056	130159224	reg1000180.p1	9.406	+	NM_032293 AK293732 AK095679	-132333	+	TSC_hg19_v1_chr9_-_129885015 NM_012098 AY358274	-274110	-	TSC_hg19_v1_chr9_-_129884962 AK312876	-274178	-	TSC_hg19_v1_chr9_+_130159479 BC019043 NM_014580 Y17801 AJ245937 DQ892909 DQ896160 AF289587	306	+	TSC_hg19_v1_chr9_-_130186602 AK124330	27426	-	NM_007135 TSC_hg19_v1_chr9_+_130186700 AK054606 BC062309 AK302284	27541	+	NM_032293|GARNL3|84253|GTPase activating Rap/RanGAP domain-like 3##AK293732|GARNL3|84253|GTPase activating Rap/RanGAP domain-like 3##AK095679|GARNL3|84253|GTPase activating Rap/RanGAP domain-like 3##NM_012098|ANGPTL2|23452|angiopoietin-like 2##AY358274|ANGPTL2|23452|angiopoietin-like 2##AK312876|ANGPTL2|23452|angiopoietin-like 2##BC019043|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##NM_014580|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##Y17801|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##AJ245937|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##DQ892909|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##DQ896160|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##AF289587|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##NM_007135|ZNF79|7633|zinc finger protein 79##AK054606|ZNF79|7633|zinc finger protein 79##BC062309|ZNF79|7633|zinc finger protein 79##AK302284|ZNF79|7633|zinc finger protein 79	1.149243	denovo_WM_21:-12:0.287	denovo_WM_21:-70:0.862
chr22	37582433	37582556	reg1000437.p1	9.399	+	BC025691 TSC_hg19_v1_chr22_-_37545956 AK312860 M26062 NM_000878	-36542	-	CR456446 TSC_hg19_v1_chr22_-_37505748	-76816	-	AB587483 AJ319876 CU013044 CU013332 CU691658 AY055384 NM_153609 BC039082	-82919	-	CU013002 CU013290 DQ891475 DQ894663 AB462967 AF329842 CR456451 TSC_hg19_v1_chr22_-_37584282 AK314060 BC020551 NM_031910 NM_182486	1797	-	BC042068 NM_001051 AK291165	25889	-	AB463213 AF498965 BT006919 CU674734 M29871 CU013155 CU013443 DQ893288 DQ896620 EU176461 TSC_hg19_v1_chr22_-_37640247 CR456555	57727	-	BC025691|IL2RB|3560|interleukin 2 receptor, beta##AK312860|IL2RB|3560|interleukin 2 receptor, beta##M26062|IL2RB|3560|interleukin 2 receptor, beta##NM_000878|IL2RB|3560|interleukin 2 receptor, beta##CR456446|TMPRSS6|164656|transmembrane protease, serine 6##AJ319876|TMPRSS6|164656|transmembrane protease, serine 6##CU013044|TMPRSS6|164656|transmembrane protease, serine 6##CU013332|TMPRSS6|164656|transmembrane protease, serine 6##AY055384|TMPRSS6|164656|transmembrane protease, serine 6##NM_153609|TMPRSS6|164656|transmembrane protease, serine 6##BC039082|TMPRSS6|164656|transmembrane protease, serine 6##CU013002|C1QTNF6|114904|C1q and tumor necrosis factor related protein 6##CU013290|C1QTNF6|114904|C1q and tumor necrosis factor related protein 6##DQ891475|C1QTNF6|114904|C1q and tumor necrosis factor related protein 6##DQ894663|C1QTNF6|114904|C1q and tumor necrosis factor related protein 6##AF329842|C1QTNF6|114904|C1q and tumor necrosis factor related protein 6##CR456451|C1QTNF6|114904|C1q and tumor necrosis factor related protein 6##AK314060|C1QTNF6|114904|C1q and tumor necrosis factor related protein 6##BC020551|C1QTNF6|114904|C1q and tumor necrosis factor related protein 6##NM_031910|C1QTNF6|114904|C1q and tumor necrosis factor related protein 6##NM_182486|C1QTNF6|114904|C1q and tumor necrosis factor related protein 6##BC042068|SSTR3|6753|somatostatin receptor 3##NM_001051|SSTR3|6753|somatostatin receptor 3##AK291165|SSTR3|6753|somatostatin receptor 3##AF498965|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##BT006919|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##M29871|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##CU013155|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##CU013443|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##DQ893288|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##DQ896620|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##EU176461|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##CR456555|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)	0.038334	
chr13	98085342	98085527	reg1000391.p1	9.392	+	TSC_hg19_v1_chr13_+_97999294 AF339832	-86140	+	AY101770 AK304699 EU446757 TSC_hg19_v1_chr13_+_97928510	-156968	+	BC020430 TSC_hg19_v1_chr13_+_97928308	-157182	+	TSC_hg19_v1_chr13_+_98086350 AK315139 NM_021033 BC041333	1003	+	TSC_hg19_v1_chr13_+_98086683 AF205602 BC070031 EU832309 EU832393 X12534 AB464128 AF493914	1268	+	NM_002271 BC045640	520503	+	AY101770|MBNL2|10150|muscleblind-like 2 (Drosophila)##AK304699|MBNL2|10150|muscleblind-like 2 (Drosophila)##EU446757|MBNL2|10150|muscleblind-like 2 (Drosophila)##BC020430|MBNL2|10150|muscleblind-like 2 (Drosophila)##AK315139|RAP2A|5911|RAP2A, member of RAS oncogene family##NM_021033|RAP2A|5911|RAP2A, member of RAS oncogene family##BC041333|RAP2A|5911|RAP2A, member of RAS oncogene family##AF205602|RAP2A|5911|RAP2A, member of RAS oncogene family##BC070031|RAP2A|5911|RAP2A, member of RAS oncogene family##EU832309|RAP2A|5911|RAP2A, member of RAS oncogene family##EU832393|RAP2A|5911|RAP2A, member of RAS oncogene family##X12534|RAP2A|5911|RAP2A, member of RAS oncogene family##AF493914|RAP2A|5911|RAP2A, member of RAS oncogene family##NM_002271|IPO5|3843|importin 5##BC045640|IPO5|3843|importin 5	1.413658	denovo_WM_21:-3:0.961	denovo_WM_21:-47:0.437
chr7	134331373	134331516	reg1000282.p1	9.383	+	NM_001080538	-97596	+	AF524864 NM_020299 BC008837	-119074	+	TSC_hg19_v1_chr7_-_134143878 AK313439 BC000260 NM_001628 AK311339	-187480	-	NM_001724 NM_199186 TSC_hg19_v1_chr7_+_134331586 BC017050 AK315439 AK097778 X04327	141	+	TSC_hg19_v1_chr7_+_134464170 NM_004342 NM_033138 NM_033157 AK289686	132722	+	TSC_hg19_v1_chr7_+_134464387 AK298524 AK304729 AF247820 M83216	132945	+	NM_001080538|AKR1B15|441282|aldo-keto reductase family 1, member B15##AF524864|AKR1B10|57016|aldo-keto reductase family 1, member B10 (aldose reductase)##NM_020299|AKR1B10|57016|aldo-keto reductase family 1, member B10 (aldose reductase)##BC008837|AKR1B10|57016|aldo-keto reductase family 1, member B10 (aldose reductase)##AK313439|AKR1B1|231|aldo-keto reductase family 1, member B1 (aldose reductase)##BC000260|AKR1B1|231|aldo-keto reductase family 1, member B1 (aldose reductase)##NM_001628|AKR1B1|231|aldo-keto reductase family 1, member B1 (aldose reductase)##AK311339|AKR1B1|231|aldo-keto reductase family 1, member B1 (aldose reductase)##NM_001724|BPGM|669|2,3-bisphosphoglycerate mutase##NM_199186|BPGM|669|2,3-bisphosphoglycerate mutase##BC017050|BPGM|669|2,3-bisphosphoglycerate mutase##AK315439|BPGM|669|2,3-bisphosphoglycerate mutase##AK097778|BPGM|669|2,3-bisphosphoglycerate mutase##X04327|BPGM|669|2,3-bisphosphoglycerate mutase##NM_004342|CALD1|800|caldesmon 1##NM_033138|CALD1|800|caldesmon 1##NM_033157|CALD1|800|caldesmon 1##AK289686|CALD1|800|caldesmon 1##AK298524|CALD1|800|caldesmon 1##AK304729|CALD1|800|caldesmon 1##AF247820|CALD1|800|caldesmon 1##M83216|CALD1|800|caldesmon 1	0.990315	denovo_WM_21:-12:0.990
chr14	91527345	91527455	reg1000185.p2	9.368	+	TSC_hg19_v1_chr14_-_91526968 AF090421 AF074393 AF080000 BC017187 AK309925 NM_004755 NM_182398	-430	-	TSC_hg19_v1_chr14_-_91526731 CU677851	-646	-	NM_001010854 TSC_hg19_v1_chr14_-_91282765	-244635	-	NM_001102366 NM_001102368 NM_001102369 NM_024952 TSC_hg19_v1_chr14_+_91580416 AK097294 AK098752 BX537970 BX161393 BX247989 BC009182 AK308857 AB210031	53005	+	TSC_hg19_v1_chr14_+_91580472 AK023200	53112	+	AK123532 TSC_hg19_v1_chr14_+_91580717 BC065558 BX248782 AK091394 AK022564	53349	+	AF090421|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##AF074393|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##AF080000|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##BC017187|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##AK309925|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##NM_004755|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##NM_182398|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##NM_001010854|TTC7B|145567|tetratricopeptide repeat domain 7B##NM_001102366|C14orf159|80017|chromosome 14 open reading frame 159##NM_001102368|C14orf159|80017|chromosome 14 open reading frame 159##NM_001102369|C14orf159|80017|chromosome 14 open reading frame 159##NM_024952|C14orf159|80017|chromosome 14 open reading frame 159##AK097294|C14orf159|80017|chromosome 14 open reading frame 159##AK098752|C14orf159|80017|chromosome 14 open reading frame 159##BX537970|C14orf159|80017|chromosome 14 open reading frame 159##BX161393|C14orf159|80017|chromosome 14 open reading frame 159##BX247989|C14orf159|80017|chromosome 14 open reading frame 159##BC009182|C14orf159|80017|chromosome 14 open reading frame 159##AK308857|C14orf159|80017|chromosome 14 open reading frame 159##AB210031|C14orf159|80017|chromosome 14 open reading frame 159##AK023200|C14orf159|80017|chromosome 14 open reading frame 159##AK123532|C14orf159|80017|chromosome 14 open reading frame 159##BC065558|C14orf159|80017|chromosome 14 open reading frame 159##BX248782|C14orf159|80017|chromosome 14 open reading frame 159##AK091394|C14orf159|80017|chromosome 14 open reading frame 159##AK022564|C14orf159|80017|chromosome 14 open reading frame 159	1.062396	denovo_WM_21:-14:0.994
chr8	25315993	25316110	reg1000173.p1	9.362	+	TSC_hg19_v1_chr8_-_25315949 NM_017634	-71	-	TSC_hg19_v1_chr8_-_25315802 BC068518	-234	-	TSC_hg19_v1_chr8_-_25315789 CU676874 BC021216 AK298518	-284	-	NM_152562	461	+	AK292505 TSC_hg19_v1_chr8_+_25316724	671	+	TSC_hg19_v1_chr8_+_25316748 AK299278 AL833627 BC015691 BC104450 BC104451	783	+	NM_017634|KCTD9|54793|potassium channel tetramerisation domain containing 9##BC068518|KCTD9|54793|potassium channel tetramerisation domain containing 9##BC021216|KCTD9|54793|potassium channel tetramerisation domain containing 9##AK298518|KCTD9|54793|potassium channel tetramerisation domain containing 9##NM_152562|CDCA2|157313|cell division cycle associated 2##AK292505|CDCA2|157313|cell division cycle associated 2##AK299278|CDCA2|157313|cell division cycle associated 2##AL833627|CDCA2|157313|cell division cycle associated 2##BC015691|CDCA2|157313|cell division cycle associated 2##BC104450|CDCA2|157313|cell division cycle associated 2##BC104451|CDCA2|157313|cell division cycle associated 2	1.95373	denovo_WM_21:11:0.960	denovo_WM_21:108:0.994
chr1	45956959	45957092	reg1000293.p1	9.358	+	TSC_hg19_v1_chr1_-_45956836 BX648441 AK027573 AK294172 BC022194 AB057597 AJ132545 AK299269 NM_007170 AK302494	-192	-	TSC_hg19_v1_chr1_+_45805883 AK298162 AK093320 BC009364 CU679325 CR457320	-151125	+	AB032924 AB032925 AB032926 AB025227 NM_001048174 AB032927 AB032928 AB032929 NM_001048172 NM_001048173 CU678424 AB590565 AB032920 AB032921 AB032922 AB032923 BC003178 AK293830 NM_001048171 NM_001128425 NM_012222	-151152	-	AK098537 NM_015506 TSC_hg19_v1_chr1_+_45965990 AL080062 BC006122	8914	+	X67951 L19184 TSC_hg19_v1_chr1_-_45987557 AK311898 BC007063 AK131049 BC021683 NM_002574 NM_181696 NM_181697	30553	-	NM_001202431	31536	-	BX648441|TESK2|10420|testis-specific kinase 2##AK027573|TESK2|10420|testis-specific kinase 2##AK294172|TESK2|10420|testis-specific kinase 2##BC022194|TESK2|10420|testis-specific kinase 2##AB057597|TESK2|10420|testis-specific kinase 2##AJ132545|TESK2|10420|testis-specific kinase 2##AK299269|TESK2|10420|testis-specific kinase 2##NM_007170|TESK2|10420|testis-specific kinase 2##AK302494|TESK2|10420|testis-specific kinase 2##AK298162|TOE1|114034|target of EGR1, member 1 (nuclear)##AK093320|TOE1|114034|target of EGR1, member 1 (nuclear)##BC009364|TOE1|114034|target of EGR1, member 1 (nuclear)##CR457320|TOE1|114034|target of EGR1, member 1 (nuclear)##AB032924|MUTYH|4595|mutY homolog (E. coli)##AB032925|MUTYH|4595|mutY homolog (E. coli)##AB032926|MUTYH|4595|mutY homolog (E. coli)##AB025227|MUTYH|4595|mutY homolog (E. coli)##NM_001048174|MUTYH|4595|mutY homolog (E. coli)##AB032927|MUTYH|4595|mutY homolog (E. coli)##AB032928|MUTYH|4595|mutY homolog (E. coli)##AB032929|MUTYH|4595|mutY homolog (E. coli)##NM_001048172|MUTYH|4595|mutY homolog (E. coli)##NM_001048173|MUTYH|4595|mutY homolog (E. coli)##AB032920|MUTYH|4595|mutY homolog (E. coli)##AB032921|MUTYH|4595|mutY homolog (E. coli)##AB032922|MUTYH|4595|mutY homolog (E. coli)##AB032923|MUTYH|4595|mutY homolog (E. coli)##BC003178|MUTYH|4595|mutY homolog (E. coli)##AK293830|MUTYH|4595|mutY homolog (E. coli)##NM_001048171|MUTYH|4595|mutY homolog (E. coli)##NM_001128425|MUTYH|4595|mutY homolog (E. coli)##NM_012222|MUTYH|4595|mutY homolog (E. coli)##AK098537|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##NM_015506|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##AL080062|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##BC006122|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##X67951|PRDX1|5052|peroxiredoxin 1##L19184|PRDX1|5052|peroxiredoxin 1##AK311898|PRDX1|5052|peroxiredoxin 1##BC007063|PRDX1|5052|peroxiredoxin 1##AK131049|PRDX1|5052|peroxiredoxin 1##BC021683|PRDX1|5052|peroxiredoxin 1##NM_002574|PRDX1|5052|peroxiredoxin 1##NM_181696|PRDX1|5052|peroxiredoxin 1##NM_181697|PRDX1|5052|peroxiredoxin 1##NM_001202431|PRDX1|5052|peroxiredoxin 1	1.754073	denovo_WM_21:4:0.808	denovo_WM_21:47:0.946
chr10	99052397	99052549	reg1000420.p1	9.356	+	BX648194 NM_001204300 NM_032900 TSC_hg19_v1_chr10_-_99052429	-34	-	TSC_hg19_v1_chr10_-_99052395 AY336750 DQ338460 BX648189 BC113888 BC114490 CR749412	-64	-	TSC_hg19_v1_chr10_-_99052389 AK090447 AK303055	-99	-	TSC_hg19_v1_chr10_+_99079028 NM_005479 AK307245 U58975 BC034476 AB074890	26584	+	TSC_hg19_v1_chr10_-_99094267 BT009770 DQ895557	41824	-	TSC_hg19_v1_chr10_-_99094476 BC020165 AB045118 NM_012083	41980	-	BX648194|ARHGAP19|84986|Rho GTPase activating protein 19##NM_001204300|ARHGAP19|84986|Rho GTPase activating protein 19##NM_032900|ARHGAP19|84986|Rho GTPase activating protein 19##AY336750|ARHGAP19-SLIT1|100533184|ARHGAP19-SLIT1 readthrough##DQ338460|ARHGAP19|84986|Rho GTPase activating protein 19##BX648189|ARHGAP19|84986|Rho GTPase activating protein 19##BC113888|ARHGAP19|84986|Rho GTPase activating protein 19##BC114490|ARHGAP19|84986|Rho GTPase activating protein 19##CR749412|ARHGAP19|84986|Rho GTPase activating protein 19##AK090447|ARHGAP19|84986|Rho GTPase activating protein 19##AK303055|ARHGAP19|84986|Rho GTPase activating protein 19##NM_005479|FRAT1|10023|frequently rearranged in advanced T-cell lymphomas##AK307245|FRAT1|10023|frequently rearranged in advanced T-cell lymphomas##U58975|FRAT1|10023|frequently rearranged in advanced T-cell lymphomas##BC034476|FRAT1|10023|frequently rearranged in advanced T-cell lymphomas##AB074890|FRAT1|10023|frequently rearranged in advanced T-cell lymphomas##BT009770|FRAT2|23401|frequently rearranged in advanced T-cell lymphomas 2##DQ895557|FRAT2|23401|frequently rearranged in advanced T-cell lymphomas 2##BC020165|FRAT2|23401|frequently rearranged in advanced T-cell lymphomas 2##AB045118|FRAT2|23401|frequently rearranged in advanced T-cell lymphomas 2##NM_012083|FRAT2|23401|frequently rearranged in advanced T-cell lymphomas 2	0.57234	denovo_WM_21:-29:0.258	denovo_WM_21:77:0.279
chr1	236958427	236958594	reg1000386.p1	9.349	+	AK315250 NM_001103 TSC_hg19_v1_chr1_+_236849798 AK297886 M86406 AB209521 BC051770 BC047901 AB590561 CU690840	-108648	+	BC062442 TSC_hg19_v1_chr1_-_236767817 AK095692 NM_018072	-190697	-	TSC_hg19_v1_chr1_+_236687323 AK296061 BC015818 AB209914	-271181	+	TSC_hg19_v1_chr1_+_236958611 AK299904 NM_000254 AK307390 U73338 AK294270	67	+	TSC_hg19_v1_chr1_+_236958699 U75743 U71285 BC130616 BC136440 BC144095 BC144097 BC144098	325	+	NM_001035 X98330 Y08218	247263	+	AK315250|ACTN2|88|actinin, alpha 2##NM_001103|ACTN2|88|actinin, alpha 2##AK297886|ACTN2|88|actinin, alpha 2##M86406|ACTN2|88|actinin, alpha 2##AB209521|ACTN2|88|actinin, alpha 2##BC051770|ACTN2|88|actinin, alpha 2##BC047901|ACTN2|88|actinin, alpha 2##BC062442|HEATR1|55127|HEAT repeat containing 1##AK095692|HEATR1|55127|HEAT repeat containing 1##NM_018072|HEATR1|55127|HEAT repeat containing 1##AK296061|LGALS8|3964|lectin, galactoside-binding, soluble, 8##BC015818|LGALS8|3964|lectin, galactoside-binding, soluble, 8##AB209914|LGALS8|3964|lectin, galactoside-binding, soluble, 8##AK299904|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##NM_000254|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##AK307390|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##U73338|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##AK294270|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##U75743|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##U71285|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##BC130616|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##BC136440|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##BC144095|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##BC144097|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##BC144098|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##NM_001035|RYR2|6262|ryanodine receptor 2 (cardiac)##X98330|RYR2|6262|ryanodine receptor 2 (cardiac)##Y08218|RYR2|6262|ryanodine receptor 2 (cardiac)	1.014076	denovo_WM_21:31:0.864
chr9	86595146	86595274	reg1000329.p2	9.341	+	TSC_hg19_v1_chr9_-_86595168 NM_031263	-35	-	TSC_hg19_v1_chr9_-_86595160 BC000355 BC025321 AB209562 AK096385 AK300744 AK307962 AK294067	-90	-	BC013220 TSC_hg19_v1_chr9_-_86584105	-11114	-	TSC_hg19_v1_chr9_-_86595531 BC014980 AK291336 X72727 NM_002140 NM_031262	329	-	NM_024945 TSC_hg19_v1_chr9_+_86595689 BC039999 BC020606 AK022950 BC044571 BC053549 BC032494	499	+	BC093821 BC093823 AK310861 AK304406 AK314039 AK292849 NM_001199633	360424	-	NM_031263|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K##BC000355|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K##BC025321|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K##AB209562|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K##AK096385|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K##AK300744|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K##AK307962|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K##AK294067|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K##BC013220|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K##BC014980|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K##AK291336|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K##X72727|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K##NM_002140|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K##NM_031262|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K##NM_024945|RMI1|80010|RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)##BC039999|RMI1|80010|RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)##BC020606|RMI1|80010|RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)##AK022950|RMI1|80010|RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)##BC044571|RMI1|80010|RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)##BC053549|RMI1|80010|RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)##BC032494|RMI1|80010|RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)##BC093821|SLC28A3|64078|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3##BC093823|SLC28A3|64078|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3##AK310861|SLC28A3|64078|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3##AK304406|SLC28A3|64078|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3##AK314039|SLC28A3|64078|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3##AK292849|SLC28A3|64078|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3##NM_001199633|SLC28A3|64078|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	0.030117	
chr19	58144428	58144570	reg1000480.p1	9.335	+	BC112294 BC113410 NM_003435	-18672	+	TSC_hg19_v1_chr19_+_58125633 U09412 BC021280	-18860	+	TSC_hg19_v1_chr19_+_58125609 AK291763 BC053511 BC042636 BC011646	-18879	+	TSC_hg19_v1_chr19_+_58144535 NM_006385 NM_198855 AK294869 BC018138 AK296942 AK297047 AK304666 BC110856 BC034351 AK026941	66	+	U38904 TSC_hg19_v1_chr19_+_58152388	7860	+	AK092424 AX747538 NM_152677	35803	+	BC112294|ZNF134|7693|zinc finger protein 134##BC113410|ZNF134|7693|zinc finger protein 134##NM_003435|ZNF134|7693|zinc finger protein 134##U09412|ZNF134|7693|zinc finger protein 134##BC021280|ZNF134|7693|zinc finger protein 134##AK291763|ZNF134|7693|zinc finger protein 134##BC042636|ZNF134|7693|zinc finger protein 134##BC011646|ZNF134|7693|zinc finger protein 134##NM_006385|ZNF211|10520|zinc finger protein 211##NM_198855|ZNF211|10520|zinc finger protein 211##AK294869|ZNF211|10520|zinc finger protein 211##BC018138|ZNF211|10520|zinc finger protein 211##AK296942|ZNF211|10520|zinc finger protein 211##AK297047|ZNF211|10520|zinc finger protein 211##AK304666|ZNF211|10520|zinc finger protein 211##BC110856|ZNF211|10520|zinc finger protein 211##BC034351|ZNF211|10520|zinc finger protein 211##AK026941|ZNF211|10520|zinc finger protein 211##U38904|ZNF211|10520|zinc finger protein 211##AK092424|ZSCAN4|201516|zinc finger and SCAN domain containing 4##NM_152677|ZSCAN4|201516|zinc finger and SCAN domain containing 4	0.780561	denovo_WM_21:-13:0.781
chr5	176853277	176853406	reg1000174.p1	9.335	+	TSC_hg19_v1_chr5_-_176836552 AB095845 NM_000505	-16786	-	M11723 M31315 TSC_hg19_v1_chr5_-_176836522	-16836	-	BC012390 TSC_hg19_v1_chr5_-_176831506	-21881	-	TSC_hg19_v1_chr5_+_176853676 NM_001004105 NM_001004106 NM_002082 BC009277 L16862 BC017272 AF040751 AF040752 CU677893 CU679285 AB527614	417	+	BC024233 NM_001174101 NM_030567 TSC_hg19_v1_chr5_+_176873814 BC004261	20478	+	NM_001174102 BC021240	21988	+	AB095845|F12|2161|coagulation factor XII (Hageman factor)##NM_000505|F12|2161|coagulation factor XII (Hageman factor)##M11723|F12|2161|coagulation factor XII (Hageman factor)##M31315|F12|2161|coagulation factor XII (Hageman factor)##BC012390|F12|2161|coagulation factor XII (Hageman factor)##NM_001004105|GRK6|2870|G protein-coupled receptor kinase 6##NM_001004106|GRK6|2870|G protein-coupled receptor kinase 6##NM_002082|GRK6|2870|G protein-coupled receptor kinase 6##BC009277|GRK6|2870|G protein-coupled receptor kinase 6##L16862|GRK6|2870|G protein-coupled receptor kinase 6##BC017272|GRK6|2870|G protein-coupled receptor kinase 6##AF040751|GRK6|2870|G protein-coupled receptor kinase 6##AF040752|GRK6|2870|G protein-coupled receptor kinase 6##BC024233|PRR7|80758|proline rich 7 (synaptic)##NM_001174101|PRR7|80758|proline rich 7 (synaptic)##NM_030567|PRR7|80758|proline rich 7 (synaptic)##BC004261|PRR7|80758|proline rich 7 (synaptic)##NM_001174102|PRR7|80758|proline rich 7 (synaptic)##BC021240|PRR7|80758|proline rich 7 (synaptic)	0.085078	
chr16	29465694	29465833	reg1000393.p1	9.327	+	TSC_hg19_v1_chr16_+_29086310 BC042920 AK225670 AK298442 AK301253	-379458	+	AK307342 NM_001014987 NM_001014988 NM_014387 TSC_hg19_v1_chr16_+_28996403 AJ223280	-469365	+	BC011563 NM_001014989	-469617	+	NM_001014999 NM_001015000 NM_024044 NM_178044 BC015990 BC071688 BC000754 BC019306 AK027092 AK225436 BC130545 BC130547 BC144462 BC069007	88	+	BC022832 NM_001031827 NM_001039182	521	-	AK298073 NM_001017390 NM_177552 BC132914 BC132920 BC144354 BC144355 BC171772 L25275	5463	+	AK225670|RRN3P2|653390|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2##AK298442|RRN3P2|653390|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2##AK301253|RRN3P2|653390|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2##AK307342|LAT|27040|linker for activation of T cells##NM_001014987|LAT|27040|linker for activation of T cells##NM_001014988|LAT|27040|linker for activation of T cells##NM_014387|LAT|27040|linker for activation of T cells##AJ223280|LAT|27040|linker for activation of T cells##BC011563|LAT|27040|linker for activation of T cells##NM_001014989|LAT|27040|linker for activation of T cells##NM_001014999|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##NM_001015000|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##NM_024044|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##NM_178044|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC015990|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC071688|SLX1A-SULT1A3|100526830|SLX1A-SULT1A3 readthrough##BC000754|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC019306|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK027092|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK225436|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC130545|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC130547|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC144462|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##BC069007|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC022832|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001031827|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001039182|BOLA2B|654483|bolA homolog 2B (E. coli)##AK298073|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##NM_001017390|SULT1A4|445329|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4##NM_177552|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132914|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132920|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144354|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144355|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC171772|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##L25275|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3	0.993855	denovo_WM_21:20:0.994
chr9	95055996	95056129	reg1000374.p1	9.292	+	TSC_hg19_v1_chr9_-_95055999 NM_002161	-49	-	TSC_hg19_v1_chr9_-_95055986 AK301272	-76	-	U04953 TSC_hg19_v1_chr9_-_95055976 BX647236 AK308202 BX647430 NM_013417 BX537417 BX537429 BX538109 BX647071 BX648567	-87	-	CR627363 TSC_hg19_v1_chr9_-_95087631 BC008491 AK001049 AK307408 BC146810 AK297355	31563	-	NM_001012267	31678	+	AB105104 NM_017948	31794	-	NM_002161|IARS|3376|isoleucyl-tRNA synthetase##AK301272|IARS|3376|isoleucyl-tRNA synthetase##U04953|IARS|3376|isoleucyl-tRNA synthetase##BX647236|IARS|3376|isoleucyl-tRNA synthetase##AK308202|IARS|3376|isoleucyl-tRNA synthetase##BX647430|IARS|3376|isoleucyl-tRNA synthetase##NM_013417|IARS|3376|isoleucyl-tRNA synthetase##BX537417|IARS|3376|isoleucyl-tRNA synthetase##BX537429|IARS|3376|isoleucyl-tRNA synthetase##BX538109|IARS|3376|isoleucyl-tRNA synthetase##BX647071|IARS|3376|isoleucyl-tRNA synthetase##BX648567|IARS|3376|isoleucyl-tRNA synthetase##CR627363|NOL8|55035|nucleolar protein 8##BC008491|NOL8|55035|nucleolar protein 8##AK001049|NOL8|55035|nucleolar protein 8##AK307408|NOL8|55035|nucleolar protein 8##BC146810|NOL8|55035|nucleolar protein 8##AK297355|NOL8|55035|nucleolar protein 8##NM_001012267|CENPP|401541|centromere protein P##AB105104|NOL8|55035|nucleolar protein 8##NM_017948|NOL8|55035|nucleolar protein 8	1.587337	denovo_WM_21:-18:0.786	denovo_WM_21:24:0.789
chr7	100209638	100209823	reg1000361.p1	9.284	+	NM_002593 TSC_hg19_v1_chr7_+_100199985 AK313748 BC000574 L33799 AB008549 AK298364 BC033205 DQ891923 DQ895108	-9751	+	AK302252 NM_001163499 NM_012172 AK301864	-22507	+	TSC_hg19_v1_chr7_+_100183929 AK292240 NM_033506 BC032497 AK310487 AL136811 BC067293 BC051745	-25728	+	NM_001040097 TSC_hg19_v1_chr7_+_100209784	39	+	TSC_hg19_v1_chr7_+_100210156 NM_001040098 NM_001040099 NM_023948 BC011653 BC009482 BC028475 BC005042	342	+	TSC_hg19_v1_chr7_-_100230676 AK000421	20971	-	NM_002593|PCOLCE|5118|procollagen C-endopeptidase enhancer##AK313748|PCOLCE|5118|procollagen C-endopeptidase enhancer##BC000574|PCOLCE|5118|procollagen C-endopeptidase enhancer##L33799|PCOLCE|5118|procollagen C-endopeptidase enhancer##AB008549|PCOLCE|5118|procollagen C-endopeptidase enhancer##AK298364|PCOLCE|5118|procollagen C-endopeptidase enhancer##BC033205|PCOLCE|5118|procollagen C-endopeptidase enhancer##DQ891923|PCOLCE|5118|procollagen C-endopeptidase enhancer##DQ895108|PCOLCE|5118|procollagen C-endopeptidase enhancer##AK302252|FBXO24|26261|F-box protein 24##NM_001163499|FBXO24|26261|F-box protein 24##NM_012172|FBXO24|26261|F-box protein 24##AK301864|FBXO24|26261|F-box protein 24##AK292240|FBXO24|26261|F-box protein 24##NM_033506|FBXO24|26261|F-box protein 24##BC032497|FBXO24|26261|F-box protein 24##AK310487|FBXO24|26261|F-box protein 24##AL136811|FBXO24|26261|F-box protein 24##BC067293|FBXO24|26261|F-box protein 24##BC051745|FBXO24|26261|F-box protein 24##NM_001040097|MOSPD3|64598|motile sperm domain containing 3##NM_001040098|MOSPD3|64598|motile sperm domain containing 3##NM_001040099|MOSPD3|64598|motile sperm domain containing 3##NM_023948|MOSPD3|64598|motile sperm domain containing 3##BC011653|MOSPD3|64598|motile sperm domain containing 3##BC009482|MOSPD3|64598|motile sperm domain containing 3##BC028475|MOSPD3|64598|motile sperm domain containing 3##BC005042|MOSPD3|64598|motile sperm domain containing 3##AK000421|TFR2|7036|transferrin receptor 2	1.941257	denovo_WM_21:36:0.911	denovo_WM_21:-51:0.894
chr4	149363714	149363843	reg1000379.p1	9.278	+	TSC_hg19_v1_chr4_-_149363539 AJ315514 M16801 AK304318 NM_000901 NM_001166104	-194	-	TSC_hg19_v1_chr4_-_149363305 BC111758	-439	-	TSC_hg19_v1_chr4_-_149357955 AB587357	-5796	-	TSC_hg19_v1_chr4_+_150999584 AB209181 NM_001040260 NM_001040261	1635747	+	NM_006439	2139298	+	TSC_hg19_v1_chr4_-_151770612 AB208838	2406871	-	AJ315514|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2##M16801|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2##AK304318|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2##NM_000901|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2##NM_001166104|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2##BC111758|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2##AB209181|DCLK2|166614|doublecortin-like kinase 2##NM_001040260|DCLK2|166614|doublecortin-like kinase 2##NM_001040261|DCLK2|166614|doublecortin-like kinase 2##NM_006439|MAB21L2|10586|mab-21-like 2 (C. elegans)##AB208838|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing	1.837843	denovo_WM_21:10:0.905	denovo_WM_21:-42:0.933
chr17	79196794	79196895	reg1000222.p1	9.254	+	TSC_hg19_v1_chr17_-_79196766 BC136578 BC136580 BC144263 BC012130 NM_001009811 NM_014984 AB029041	-78	-	AK131529 NM_001080395 TSC_hg19_v1_chr17_-_79139926	-56939	-	AB014541 NM_004920 TSC_hg19_v1_chr17_-_79105774	-91082	-	TSC_hg19_v1_chr17_-_79212861 AK128728 BC064483 BC042155 AK056090	15979	-	TSC_hg19_v1_chr17_-_79212892 NM_144679	16045	-	BC141912 BC127837 NM_001086521 TSC_hg19_v1_chr17_+_79213151 BC079831	16290	+	BC136578|AZI1|22994|5-azacytidine induced 1##BC136580|AZI1|22994|5-azacytidine induced 1##BC144263|AZI1|22994|5-azacytidine induced 1##BC012130|AZI1|22994|5-azacytidine induced 1##NM_001009811|AZI1|22994|5-azacytidine induced 1##NM_014984|AZI1|22994|5-azacytidine induced 1##AB029041|AZI1|22994|5-azacytidine induced 1##AK131529|AATK|9625|apoptosis-associated tyrosine kinase##NM_001080395|AATK|9625|apoptosis-associated tyrosine kinase##AB014541|AATK|9625|apoptosis-associated tyrosine kinase##NM_004920|AATK|9625|apoptosis-associated tyrosine kinase##AK128728|C17orf56|146705|chromosome 17 open reading frame 56##BC064483|C17orf56|146705|chromosome 17 open reading frame 56##BC042155|C17orf56|146705|chromosome 17 open reading frame 56##AK056090|C17orf56|146705|chromosome 17 open reading frame 56##NM_144679|C17orf56|146705|chromosome 17 open reading frame 56##BC127837|C17orf89|284184|chromosome 17 open reading frame 89##NM_001086521|C17orf89|284184|chromosome 17 open reading frame 89##BC079831|C17orf89|284184|chromosome 17 open reading frame 89	0.106343	
chr9	128003807	128003940	reg1000152.p2	9.233	+	TSC_hg19_v1_chr9_-_128003635 NM_005347	-159	-	TSC_hg19_v1_chr9_-_128003623 AK293604 X87949	-250	-	AF188611 AB527282 AF216292 DQ892173 DQ895368 AJ271729 TSC_hg19_v1_chr9_-_128003594 BC020235	-393	-	TSC_hg19_v1_chr9_+_128024074 AK294542	20204	+	TSC_hg19_v1_chr9_+_128024097 AK296381	20225	+	TSC_hg19_v1_chr9_+_128024104 BC110990	20231	+	NM_005347|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##AK293604|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##X87949|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##AF188611|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##AF216292|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##DQ892173|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##DQ895368|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##AJ271729|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##BC020235|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##AK294542|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##AK296381|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##BC110990|GAPVD1|26130|GTPase activating protein and VPS9 domains 1	0.093241	
chr12	56211533	56211689	reg1000130.p1	9.195	+	TSC_hg19_v1_chr12_-_56211511 NM_033082	-78	-	TSC_hg19_v1_chr12_-_56211507 AF161434 BC007099 BC093051 AK222719 AK290508	-105	-	AB463939 AF486281 TSC_hg19_v1_chr12_-_56211499	-119	-	AF395707 NM_014182 TSC_hg19_v1_chr12_+_56211824 AK314046 AF173375 AF161509	176	+	TSC_hg19_v1_chr12_+_56211873 AK223180	259	+	AK057354 BC117146 BC117148 TSC_hg19_v1_chr12_-_56223333 BC050271 AY188447 EF560741	11662	-	NM_033082|SARNP|84324|SAP domain containing ribonucleoprotein##AF161434|SARNP|84324|SAP domain containing ribonucleoprotein##BC007099|SARNP|84324|SAP domain containing ribonucleoprotein##BC093051|SARNP|84324|SAP domain containing ribonucleoprotein##AK222719|SARNP|84324|SAP domain containing ribonucleoprotein##AK290508|SARNP|84324|SAP domain containing ribonucleoprotein##AF486281|SARNP|84324|SAP domain containing ribonucleoprotein##AF395707|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##NM_014182|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##AK314046|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##AF173375|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##AF161509|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##AK223180|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##AK057354|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##BC117146|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##BC117148|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##AY188447|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##EF560741|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14	0.921507	denovo_WM_21:7:0.904
chr15	83478227	83478349	reg1000283.p1	9.192	+	NM_001080435	-316	+	BC130569 BC144175 BC144181 NM_001007122 AK122875 AL833295	-3476	-	TSC_hg19_v1_chr15_+_83419326 BX538250	-58971	+	TSC_hg19_v1_chr15_+_83478391 AK126887 AB075851	83	+	AF081530 TSC_hg19_v1_chr15_-_83621443 AK292772 BC012109 NM_004839 NM_199330	143134	-	TSC_hg19_v1_chr15_-_83654854 AK097109	176571	-	NM_001080435|WHAMM|123720|WAS protein homolog associated with actin, golgi membranes and microtubules##BC130569|FSD2|123722|fibronectin type III and SPRY domain containing 2##BC144175|FSD2|123722|fibronectin type III and SPRY domain containing 2##BC144181|FSD2|123722|fibronectin type III and SPRY domain containing 2##NM_001007122|FSD2|123722|fibronectin type III and SPRY domain containing 2##AK122875|FSD2|123722|fibronectin type III and SPRY domain containing 2##AL833295|FSD2|123722|fibronectin type III and SPRY domain containing 2##AK126887|WHAMM|123720|WAS protein homolog associated with actin, golgi membranes and microtubules##AB075851|WHAMM|123720|WAS protein homolog associated with actin, golgi membranes and microtubules##AF081530|HOMER2|9455|homer homolog 2 (Drosophila)##AK292772|HOMER2|9455|homer homolog 2 (Drosophila)##BC012109|HOMER2|9455|homer homolog 2 (Drosophila)##NM_004839|HOMER2|9455|homer homolog 2 (Drosophila)##NM_199330|HOMER2|9455|homer homolog 2 (Drosophila)##AK097109|LOC100131860|100131860|uncharacterized LOC100131860	1.879491	denovo_WM_21:39:0.993	denovo_WM_21:-41:0.887
chr1	150602155	150602286	reg1000150.p3	9.190	+	TSC_hg19_v1_chr1_-_150602089 NM_004436 NM_207042 NM_207043 NM_207044 NM_207168	-127	-	TSC_hg19_v1_chr1_-_150602054 AF157509 AF157510 AF067170 CR749580 BC068544 X99906 AK057673 AK001981	-161	-	TSC_hg19_v1_chr1_-_150602045 BC000436 BC004461	-177	-	AJ296153 TSC_hg19_v1_chr1_-_150669631 AK300635 AK315594 NM_018178	67365	-	AK098633 BC033014 AK097390 BC047406 AL136755 AY626344 NM_001199829 NM_032132	91122	-	TSC_hg19_v1_chr1_-_150738233 BC002642	136012	-	NM_004436|ENSA|2029|endosulfine alpha##NM_207042|ENSA|2029|endosulfine alpha##NM_207043|ENSA|2029|endosulfine alpha##NM_207044|ENSA|2029|endosulfine alpha##NM_207168|ENSA|2029|endosulfine alpha##AF157509|ENSA|2029|endosulfine alpha##AF157510|ENSA|2029|endosulfine alpha##AF067170|ENSA|2029|endosulfine alpha##CR749580|ENSA|2029|endosulfine alpha##BC068544|ENSA|2029|endosulfine alpha##X99906|ENSA|2029|endosulfine alpha##AK057673|ENSA|2029|endosulfine alpha##AK001981|ENSA|2029|endosulfine alpha##BC000436|ENSA|2029|endosulfine alpha##BC004461|ENSA|2029|endosulfine alpha##AJ296153|GOLPH3L|55204|golgi phosphoprotein 3-like##AK300635|GOLPH3L|55204|golgi phosphoprotein 3-like##AK315594|GOLPH3L|55204|golgi phosphoprotein 3-like##NM_018178|GOLPH3L|55204|golgi phosphoprotein 3-like##AK098633|HORMAD1|84072|HORMA domain containing 1##BC033014|HORMAD1|84072|HORMA domain containing 1##AK097390|HORMAD1|84072|HORMA domain containing 1##BC047406|HORMAD1|84072|HORMA domain containing 1##AL136755|HORMAD1|84072|HORMA domain containing 1##AY626344|HORMAD1|84072|HORMA domain containing 1##NM_001199829|HORMAD1|84072|HORMA domain containing 1##NM_032132|HORMAD1|84072|HORMA domain containing 1##BC002642|CTSS|1520|cathepsin S	0.406387	denovo_WM_21:28:0.341
chr17	26368254	26368374	reg1000003.p1	9.157	+	TSC_hg19_v1_chr17_-_26220392 AK055808 AK310926 NM_001076680	-147923	-	BC130283 BC144126 U05810 L09210 X73029 AF068236 AK304252 NM_000625 TSC_hg19_v1_chr17_-_26127556	-240799	-	U31511 TSC_hg19_v1_chr17_-_26127402	-240916	-	TSC_hg19_v1_chr17_+_26369661 AK315315 AF197898 NM_016231 AF180819	1339	+	AB384832 AK024686 TSC_hg19_v1_chr17_+_26370066	1687	+	NM_014573 TSC_hg19_v1_chr17_+_26646214 L19183 AK299511 AK307678 BC017362 BC091504 AK293331	277879	+	AK055808|C17orf108|201229|chromosome 17 open reading frame 108##NM_001076680|C17orf108|201229|chromosome 17 open reading frame 108##BC130283|NOS2|4843|nitric oxide synthase 2, inducible##BC144126|NOS2|4843|nitric oxide synthase 2, inducible##U05810|NOS2|4843|nitric oxide synthase 2, inducible##L09210|NOS2|4843|nitric oxide synthase 2, inducible##X73029|NOS2|4843|nitric oxide synthase 2, inducible##AF068236|NOS2|4843|nitric oxide synthase 2, inducible##AK304252|NOS2|4843|nitric oxide synthase 2, inducible##NM_000625|NOS2|4843|nitric oxide synthase 2, inducible##U31511|NOS2|4843|nitric oxide synthase 2, inducible##AK315315|NLK|51701|nemo-like kinase##AF197898|NLK|51701|nemo-like kinase##NM_016231|NLK|51701|nemo-like kinase##AF180819|NLK|51701|nemo-like kinase##AK024686|NLK|51701|nemo-like kinase##NM_014573|TMEM97|27346|transmembrane protein 97##L19183|TMEM97|27346|transmembrane protein 97##AK299511|TMEM97|27346|transmembrane protein 97##AK307678|TMEM97|27346|transmembrane protein 97##BC017362|TMEM97|27346|transmembrane protein 97##BC091504|TMEM97|27346|transmembrane protein 97##AK293331|TMEM97|27346|transmembrane protein 97	0.161324	
chr16	30205036	30205176	reg1000383.p1	9.141	+	AF495470 AK096332 TSC_hg19_v1_chr16_+_30194929 AK296207 AK314714 D44497 X89109 U34690 BC126385 BC126387	-10131	+	NM_001193333 NM_007074 TSC_hg19_v1_chr16_+_30194922 BC110374	-10280	+	TSC_hg19_v1_chr16_-_30134584 NM_001040056 NM_001109891 NM_002746	-70489	-	NM_001014999 NM_001015000 NM_024044 NM_178044 BC015990 BC071688 BC000754 BC019306 AK027092 AK225436 BC130545 BC130547 BC144462 BC069007	87	+	BC022832 NM_001031827 NM_001039182	520	-	AK298073 NM_001017390 NM_177552 BC132914 BC132920 BC144354 BC144355 BC171772 L25275	5462	+	AF495470|CORO1A|11151|coronin, actin binding protein, 1A##AK096332|CORO1A|11151|coronin, actin binding protein, 1A##AK296207|CORO1A|11151|coronin, actin binding protein, 1A##AK314714|CORO1A|11151|coronin, actin binding protein, 1A##D44497|CORO1A|11151|coronin, actin binding protein, 1A##X89109|CORO1A|11151|coronin, actin binding protein, 1A##U34690|CORO1A|11151|coronin, actin binding protein, 1A##BC126385|CORO1A|11151|coronin, actin binding protein, 1A##BC126387|CORO1A|11151|coronin, actin binding protein, 1A##NM_001193333|CORO1A|11151|coronin, actin binding protein, 1A##NM_007074|CORO1A|11151|coronin, actin binding protein, 1A##BC110374|CORO1A|11151|coronin, actin binding protein, 1A##NM_001040056|MAPK3|5595|mitogen-activated protein kinase 3##NM_001109891|MAPK3|5595|mitogen-activated protein kinase 3##NM_002746|MAPK3|5595|mitogen-activated protein kinase 3##NM_001014999|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##NM_001015000|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##NM_024044|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##NM_178044|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC015990|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC071688|SLX1A-SULT1A3|100526830|SLX1A-SULT1A3 readthrough##BC000754|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC019306|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK027092|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK225436|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC130545|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC130547|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC144462|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##BC069007|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC022832|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001031827|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001039182|BOLA2B|654483|bolA homolog 2B (E. coli)##AK298073|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##NM_001017390|SULT1A4|445329|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4##NM_177552|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132914|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132920|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144354|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144355|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC171772|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##L25275|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3	0.993855	denovo_WM_21:20:0.994
chr7	72936631	72936755	reg1000357.p1	9.123	+	TSC_hg19_v1_chr7_-_72936624 AB032253 AF072810 NM_032408	-78	-	TSC_hg19_v1_chr7_-_72936538 AF084479	-144	-	BC136520 BC065029 TSC_hg19_v1_chr7_-_72936492	-210	-	TSC_hg19_v1_chr7_-_72971945 CU679393 DQ890556 DQ893716 BC001967 AJ223979 X89985 AK290091 BC009548	35240	-	TSC_hg19_v1_chr7_-_72972023 BC000956 NM_001197244 NM_001707	35349	-	TSC_hg19_v1_chr7_-_72992678 AK302265	56026	-	AB032253|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##AF072810|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##NM_032408|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##AF084479|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##BC136520|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##BC065029|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##DQ890556|BCL7B|9275|B-cell CLL/lymphoma 7B##DQ893716|BCL7B|9275|B-cell CLL/lymphoma 7B##BC001967|BCL7B|9275|B-cell CLL/lymphoma 7B##AJ223979|BCL7B|9275|B-cell CLL/lymphoma 7B##X89985|BCL7B|9275|B-cell CLL/lymphoma 7B##AK290091|BCL7B|9275|B-cell CLL/lymphoma 7B##BC009548|BCL7B|9275|B-cell CLL/lymphoma 7B##BC000956|BCL7B|9275|B-cell CLL/lymphoma 7B##NM_001197244|BCL7B|9275|B-cell CLL/lymphoma 7B##NM_001707|BCL7B|9275|B-cell CLL/lymphoma 7B##AK302265|TBL2|26608|transducin (beta)-like 2	0.347273	denovo_WM_21:0:0.314
chr1	43147929	43148055	reg1000336.p1	9.117	+	NM_006347 TSC_hg19_v1_chr1_+_43124093 AK310052 AK311979 BC003412 AK309438 AF016371 AF036331 DQ890971 DQ894146 BT019343 CR541899 CR541920	-23910	+	NM_001080850	-147433	+	BC090885 BC101199 BC101200 TSC_hg19_v1_chr1_-_42966086	-181974	-	TSC_hg19_v1_chr1_+_43148064 NM_004559	68	+	TSC_hg19_v1_chr1_+_43148096 AK309996 AK311708	104	+	TSC_hg19_v1_chr1_+_43148098 BC070084	108	+	NM_006347|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##AK310052|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##AK311979|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##BC003412|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##AK309438|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##AF016371|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##AF036331|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##DQ890971|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##DQ894146|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##BT019343|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##CR541899|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##CR541920|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##NM_001080850|CCDC30|728621|coiled-coil domain containing 30##BC101199|TMSB4XP1|7115|thymosin beta 4, X-linked pseudogene 1##BC101200|TMSB4XP1|7115|thymosin beta 4, X-linked pseudogene 1##NM_004559|YBX1|4904|Y box binding protein 1##AK309996|YBX1|4904|Y box binding protein 1##AK311708|YBX1|4904|Y box binding protein 1##BC070084|YBX1|4904|Y box binding protein 1	1.761585	denovo_WM_21:-6:0.851	denovo_WM_21:-38:0.910
chr2	20251451	20251592	reg1000370.p1	9.117	+	TSC_hg19_v1_chr2_-_20251415 AY359028 D14696 BC003158 AK129875	-94	-	CR456758 TSC_hg19_v1_chr2_-_20251382 BC000421 AK304433 BC093075	-183	-	TSC_hg19_v1_chr2_-_20212456 AK290856 NM_002381	-39056	-	NM_014713	267	-	X60306 AB464260 CU679093 DQ893265 DQ896595 TSC_hg19_v1_chr2_-_20424892 AK299385 J05392 AK313974 AK222739 BC008765 AJ551176 AK311409 NM_002997	173266	-	TSC_hg19_v1_chr2_-_20425168 NM_001006946	173658	-	AY359028|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##D14696|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##BC003158|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##AK129875|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##CR456758|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##BC000421|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##AK304433|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##BC093075|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##AK290856|MATN3|4148|matrilin 3##NM_002381|MATN3|4148|matrilin 3##NM_014713|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##X60306|SDC1|6382|syndecan 1##DQ893265|SDC1|6382|syndecan 1##DQ896595|SDC1|6382|syndecan 1##AK299385|SDC1|6382|syndecan 1##J05392|SDC1|6382|syndecan 1##AK313974|SDC1|6382|syndecan 1##AK222739|SDC1|6382|syndecan 1##BC008765|SDC1|6382|syndecan 1##AJ551176|SDC1|6382|syndecan 1##NM_002997|SDC1|6382|syndecan 1##NM_001006946|SDC1|6382|syndecan 1	0.748431	denovo_WM_21:-32:0.641
chr5	176853413	176853556	reg1000174.p2	9.114	+	TSC_hg19_v1_chr5_-_176836552 AB095845 NM_000505	-16929	-	M11723 M31315 TSC_hg19_v1_chr5_-_176836522	-16979	-	BC012390 TSC_hg19_v1_chr5_-_176831506	-22024	-	TSC_hg19_v1_chr5_+_176853676 NM_001004105 NM_001004106 NM_002082 BC009277 L16862 BC017272 AF040751 AF040752 CU677893 CU679285 AB527614	274	+	BC024233 NM_001174101 NM_030567 TSC_hg19_v1_chr5_+_176873814 BC004261	20335	+	NM_001174102 BC021240	21845	+	AB095845|F12|2161|coagulation factor XII (Hageman factor)##NM_000505|F12|2161|coagulation factor XII (Hageman factor)##M11723|F12|2161|coagulation factor XII (Hageman factor)##M31315|F12|2161|coagulation factor XII (Hageman factor)##BC012390|F12|2161|coagulation factor XII (Hageman factor)##NM_001004105|GRK6|2870|G protein-coupled receptor kinase 6##NM_001004106|GRK6|2870|G protein-coupled receptor kinase 6##NM_002082|GRK6|2870|G protein-coupled receptor kinase 6##BC009277|GRK6|2870|G protein-coupled receptor kinase 6##L16862|GRK6|2870|G protein-coupled receptor kinase 6##BC017272|GRK6|2870|G protein-coupled receptor kinase 6##AF040751|GRK6|2870|G protein-coupled receptor kinase 6##AF040752|GRK6|2870|G protein-coupled receptor kinase 6##BC024233|PRR7|80758|proline rich 7 (synaptic)##NM_001174101|PRR7|80758|proline rich 7 (synaptic)##NM_030567|PRR7|80758|proline rich 7 (synaptic)##BC004261|PRR7|80758|proline rich 7 (synaptic)##NM_001174102|PRR7|80758|proline rich 7 (synaptic)##BC021240|PRR7|80758|proline rich 7 (synaptic)	0.126904	
chr17	79980930	79981074	reg1000191.p1	9.106	+	TSC_hg19_v1_chr17_-_79980755 BC011610 U95006 U95007 BC009571 NM_144998	-271	-	TSC_hg19_v1_chr17_+_79935513 AF324219 AK290624 AK057851 BC018722 CU676290 DQ892522 DQ895734 AK226086	-45480	+	TSC_hg19_v1_chr17_+_79935477 AK057403 NM_001251888 NM_024083	-45554	+	TSC_hg19_v1_chr17_+_79981196 BC014109 NM_144999	231	+	TSC_hg19_v1_chr17_+_79989582 BC009605 BC015197 NM_005052 AF008591 AB528368 DQ893123 DQ896400 CU679415 AF498966 BT019443	8559	+	BC003018 AB013846 AF515623 AF515624 AF515625 BT006881 BC001470 AF113123 AF139841 AK226040 NM_001195218 NM_016286 TSC_hg19_v1_chr17_-_79995574	14567	-	BC011610|STRA13|201254|stimulated by retinoic acid 13 homolog (mouse)##U95006|STRA13|201254|stimulated by retinoic acid 13 homolog (mouse)##U95007|STRA13|201254|stimulated by retinoic acid 13 homolog (mouse)##BC009571|STRA13|201254|stimulated by retinoic acid 13 homolog (mouse)##NM_144998|STRA13|201254|stimulated by retinoic acid 13 homolog (mouse)##AF324219|ASPSCR1|79058|alveolar soft part sarcoma chromosome region, candidate 1##AK290624|ASPSCR1|79058|alveolar soft part sarcoma chromosome region, candidate 1##AK057851|ASPSCR1|79058|alveolar soft part sarcoma chromosome region, candidate 1##BC018722|ASPSCR1|79058|alveolar soft part sarcoma chromosome region, candidate 1##DQ892522|ASPSCR1|79058|alveolar soft part sarcoma chromosome region, candidate 1##DQ895734|ASPSCR1|79058|alveolar soft part sarcoma chromosome region, candidate 1##AK226086|ASPSCR1|79058|alveolar soft part sarcoma chromosome region, candidate 1##AK057403|ASPSCR1|79058|alveolar soft part sarcoma chromosome region, candidate 1##NM_001251888|ASPSCR1|79058|alveolar soft part sarcoma chromosome region, candidate 1##NM_024083|ASPSCR1|79058|alveolar soft part sarcoma chromosome region, candidate 1##BC014109|LRRC45|201255|leucine rich repeat containing 45##NM_144999|LRRC45|201255|leucine rich repeat containing 45##BC009605|RAC3|5881|ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3)##BC015197|RAC3|5881|ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3)##NM_005052|RAC3|5881|ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3)##AF008591|RAC3|5881|ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3)##DQ893123|RAC3|5881|ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3)##DQ896400|RAC3|5881|ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3)##AF498966|RAC3|5881|ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3)##BT019443|RAC3|5881|ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3)##BC003018|DCXR|51181|dicarbonyl/L-xylulose reductase##AB013846|DCXR|51181|dicarbonyl/L-xylulose reductase##AF515623|DCXR|51181|dicarbonyl/L-xylulose reductase##AF515624|DCXR|51181|dicarbonyl/L-xylulose reductase##AF515625|DCXR|51181|dicarbonyl/L-xylulose reductase##BT006881|DCXR|51181|dicarbonyl/L-xylulose reductase##BC001470|DCXR|51181|dicarbonyl/L-xylulose reductase##AF113123|DCXR|51181|dicarbonyl/L-xylulose reductase##AF139841|DCXR|51181|dicarbonyl/L-xylulose reductase##AK226040|DCXR|51181|dicarbonyl/L-xylulose reductase##NM_001195218|DCXR|51181|dicarbonyl/L-xylulose reductase##NM_016286|DCXR|51181|dicarbonyl/L-xylulose reductase	1.194131	denovo_WM_21:104:0.972
chr16	56485274	56485422	reg1000311.p1	9.102	+	AJ001810 CR456919 AB590091 AM392991 AM393219 DQ892142 DQ895336 TSC_hg19_v1_chr16_-_56485242 BC001403 BX647665 NM_007006 AK312721 BX537360	-138	-	TSC_hg19_v1_chr16_-_56459390 NM_001144 BC069197	-25925	-	AF124145 TSC_hg19_v1_chr16_-_56459357	-26019	-	NM_018233 TSC_hg19_v1_chr16_+_56485431 AK022752	80	+	AK001688 TSC_hg19_v1_chr16_+_56485464 AK022130 BC032919 AK304584 AB046832	129	+	AB527821 DQ892680 DQ895923 TSC_hg19_v1_chr16_-_56553937 AK289604 BC014140 AK309068 AK027635	68516	-	AJ001810|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##CR456919|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##AM392991|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##AM393219|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##DQ892142|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##DQ895336|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##BC001403|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##BX647665|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##NM_007006|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##AK312721|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##BX537360|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##NM_001144|AMFR|267|autocrine motility factor receptor##BC069197|AMFR|267|autocrine motility factor receptor##AF124145|AMFR|267|autocrine motility factor receptor##NM_018233|OGFOD1|55239|2-oxoglutarate and iron-dependent oxygenase domain containing 1##AK022752|OGFOD1|55239|2-oxoglutarate and iron-dependent oxygenase domain containing 1##AK001688|OGFOD1|55239|2-oxoglutarate and iron-dependent oxygenase domain containing 1##AK022130|OGFOD1|55239|2-oxoglutarate and iron-dependent oxygenase domain containing 1##BC032919|OGFOD1|55239|2-oxoglutarate and iron-dependent oxygenase domain containing 1##AK304584|OGFOD1|55239|2-oxoglutarate and iron-dependent oxygenase domain containing 1##AB046832|OGFOD1|55239|2-oxoglutarate and iron-dependent oxygenase domain containing 1##DQ892680|BBS2|583|Bardet-Biedl syndrome 2##DQ895923|BBS2|583|Bardet-Biedl syndrome 2##AK289604|BBS2|583|Bardet-Biedl syndrome 2##BC014140|BBS2|583|Bardet-Biedl syndrome 2##AK309068|BBS2|583|Bardet-Biedl syndrome 2##AK027635|BBS2|583|Bardet-Biedl syndrome 2	0.164602	
chr21	47743794	47743912	reg1000355.p1	9.082	+	BC067876 TSC_hg19_v1_chr21_-_47743788 BC098408 BC044223 BC121007 BC121008 AK056387 NM_058180 BC026042	-83	-	AY040873 AY040874 AY040875 AY040876 BC119770 BC122865 BC131553 BC022828 TSC_hg19_v1_chr21_+_47706312 AK128875 BC068100	-37521	+	TSC_hg19_v1_chr21_+_47706255 AK294975 NM_001006114 NM_058181	-37604	+	TSC_hg19_v1_chr21_+_47744054 NM_006031 AK024009 BC035913 U52962 AF515282	234	+	TSC_hg19_v1_chr21_+_47744613 AB007862	805	+	TSC_hg19_v1_chr21_-_47878602 AK127572	134748	-	BC098408|C21orf58|54058|chromosome 21 open reading frame 58##BC044223|C21orf58|54058|chromosome 21 open reading frame 58##BC121007|C21orf58|54058|chromosome 21 open reading frame 58##BC121008|C21orf58|54058|chromosome 21 open reading frame 58##AK056387|C21orf58|54058|chromosome 21 open reading frame 58##NM_058180|C21orf58|54058|chromosome 21 open reading frame 58##BC026042|C21orf58|54058|chromosome 21 open reading frame 58##AY040873|YBEY|54059|ybeY metallopeptidase (putative)##AY040874|YBEY|54059|ybeY metallopeptidase (putative)##AY040875|YBEY|54059|ybeY metallopeptidase (putative)##AY040876|YBEY|54059|ybeY metallopeptidase (putative)##BC119770|YBEY|54059|ybeY metallopeptidase (putative)##BC122865|YBEY|54059|ybeY metallopeptidase (putative)##BC131553|YBEY|54059|ybeY metallopeptidase (putative)##BC022828|YBEY|54059|ybeY metallopeptidase (putative)##AK128875|YBEY|54059|ybeY metallopeptidase (putative)##BC068100|YBEY|54059|ybeY metallopeptidase (putative)##AK294975|YBEY|54059|ybeY metallopeptidase (putative)##NM_001006114|YBEY|54059|ybeY metallopeptidase (putative)##NM_058181|YBEY|54059|ybeY metallopeptidase (putative)##NM_006031|PCNT|5116|pericentrin##AK024009|PCNT|5116|pericentrin##BC035913|PCNT|5116|pericentrin##U52962|PCNT|5116|pericentrin##AF515282|PCNT|5116|pericentrin##AB007862|PCNT|5116|pericentrin	0.909146	denovo_WM_21:-26:0.909
chr12	8179242	8179388	reg1000436.p1	9.075	+	CR457413 CU691674 DQ891118 DQ894297 DQ894299 AB209607 BC039196 AK304509 AK298673 AK312386 M20681 TSC_hg19_v1_chr12_-_8088888 NM_006931	-90549	-	AK299037 AK316238 TSC_hg19_v1_chr12_-_8043786	-135547	-	AK126026 AK122783 TSC_hg19_v1_chr12_-_8025469 AK302881 AF481878 BC060766 AF481879 NM_153449	-153849	-	TSC_hg19_v1_chr12_+_8185313 BC032608 NM_018416	6175	+	TSC_hg19_v1_chr12_-_8218956 U28488 AK290242 AK312458 BC020742 NM_004054 AK223388	39638	-	TSC_hg19_v1_chr12_-_8219032 U62027	39701	-	CR457413|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ891118|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ894297|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ894299|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AB209607|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##BC039196|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK304509|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK298673|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK312386|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##M20681|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##NM_006931|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK299037|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK316238|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK126026|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK122783|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK302881|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AF481878|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##BC060766|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AF481879|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##NM_153449|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##NM_018416|FOXJ2|55810|forkhead box J2##U28488|C3AR1|719|complement component 3a receptor 1##AK290242|C3AR1|719|complement component 3a receptor 1##AK312458|C3AR1|719|complement component 3a receptor 1##BC020742|C3AR1|719|complement component 3a receptor 1##NM_004054|C3AR1|719|complement component 3a receptor 1##AK223388|C3AR1|719|complement component 3a receptor 1##U62027|C3AR1|719|complement component 3a receptor 1	1.745792	denovo_WM_21:15:0.808	denovo_WM_21:-84:0.862
chr2	153573956	153574119	reg1000397.p2	9.062	+	TSC_hg19_v1_chr2_-_153573924 U70667 AF049524 AF049528 BC000273 BC073138 BC011788 AF049523 AK298547 AK024810 BC029414 NM_017892	-117	-	BC113878 BC114438 TSC_hg19_v1_chr2_+_153191857 AB067489 BC167159 AB385514	-382064	+	TSC_hg19_v1_chr2_+_153191687 NM_052905	-382367	+	TSC_hg19_v1_chr2_+_153574392 NM_152522 AK023109	411	+	TSC_hg19_v1_chr2_+_153575123 AK315657	1078	+	BC028741 TSC_hg19_v1_chr2_+_153575133	1094	+	U70667|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AF049524|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AF049528|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##BC000273|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##BC073138|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##BC011788|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AF049523|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AK298547|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AK024810|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##BC029414|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##NM_017892|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##BC113878|FMNL2|114793|formin-like 2##BC114438|FMNL2|114793|formin-like 2##AB067489|FMNL2|114793|formin-like 2##BC167159|FMNL2|114793|formin-like 2##NM_052905|FMNL2|114793|formin-like 2##NM_152522|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6##AK023109|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6##AK315657|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6##BC028741|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6	0.977738	denovo_WM_21:34:0.952
chr1	36916042	36916169	reg1000356.p1	9.053	+	AB079075 AK098541 BC018069 NM_145047 NM_206837	-78	-	AF394685 TSC_hg19_v1_chr1_-_36863508 AF166092 BC007623 NM_032881	-52612	-	TSC_hg19_v1_chr1_-_36851517 AK075048	-64582	-	TSC_hg19_v1_chr1_-_36929984 AB049946 AB209905 AK021626 BC031336 AF265439 AK315441 AK302633 NM_031280	13854	-	BC040954 TSC_hg19_v1_chr1_-_36948515 AK307242 X55720 X55721 M59818 M59819 M59820 BC053585	32379	-	NM_000760 NM_156039 NM_172313	32809	-	AB079075|OSCP1|127700|organic solute carrier partner 1##AK098541|OSCP1|127700|organic solute carrier partner 1##BC018069|OSCP1|127700|organic solute carrier partner 1##NM_145047|OSCP1|127700|organic solute carrier partner 1##NM_206837|OSCP1|127700|organic solute carrier partner 1##AF394685|LSM10|84967|LSM10, U7 small nuclear RNA associated##AF166092|LSM10|84967|LSM10, U7 small nuclear RNA associated##BC007623|LSM10|84967|LSM10, U7 small nuclear RNA associated##NM_032881|LSM10|84967|LSM10, U7 small nuclear RNA associated##AK075048|STK40|83931|serine/threonine kinase 40##AB049946|MRPS15|64960|mitochondrial ribosomal protein S15##AB209905|MRPS15|64960|mitochondrial ribosomal protein S15##AK021626|MRPS15|64960|mitochondrial ribosomal protein S15##BC031336|MRPS15|64960|mitochondrial ribosomal protein S15##AF265439|MRPS15|64960|mitochondrial ribosomal protein S15##AK315441|MRPS15|64960|mitochondrial ribosomal protein S15##AK302633|MRPS15|64960|mitochondrial ribosomal protein S15##NM_031280|MRPS15|64960|mitochondrial ribosomal protein S15##BC040954|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##AK307242|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##X55720|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##X55721|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##M59818|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##M59819|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##M59820|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##BC053585|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##NM_000760|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##NM_156039|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##NM_172313|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)	1.012665	denovo_WM_21:-8:0.993
chr16	103626	103791	reg1000304.p1	9.048	+	TSC_hg19_v1_chr16_-_103609 AB587374 DQ896281 EU176418 BC011932 AF060223 AF051316 NM_016310	-77	-	BC001381 TSC_hg19_v1_chr16_+_103106	-649	+	None	None	None	TSC_hg19_v1_chr16_+_103838 NM_024571	130	+	AK026593 TSC_hg19_v1_chr16_+_103859 BC009179	160	+	TSC_hg19_v1_chr16_+_103908 Z84714 DQ892129 DQ892337 DQ895322	231	+	DQ896281|POLR3K|51728|polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa##EU176418|POLR3K|51728|polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa##BC011932|POLR3K|51728|polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa##AF060223|POLR3K|51728|polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa##AF051316|POLR3K|51728|polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa##NM_016310|POLR3K|51728|polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa##BC001381|SNRNP25|79622|small nuclear ribonucleoprotein 25kDa (U11/U12)##NM_024571|SNRNP25|79622|small nuclear ribonucleoprotein 25kDa (U11/U12)##AK026593|SNRNP25|79622|small nuclear ribonucleoprotein 25kDa (U11/U12)##BC009179|SNRNP25|79622|small nuclear ribonucleoprotein 25kDa (U11/U12)##Z84714|SNRNP25|79622|small nuclear ribonucleoprotein 25kDa (U11/U12)##DQ892129|SNRNP25|79622|small nuclear ribonucleoprotein 25kDa (U11/U12)##DQ892337|SNRNP25|79622|small nuclear ribonucleoprotein 25kDa (U11/U12)##DQ895322|SNRNP25|79622|small nuclear ribonucleoprotein 25kDa (U11/U12)	1.150372	denovo_WM_21:-2:0.347	denovo_WM_21:52:0.734
chr19	14247514	14247699	reg1000272.p1	9.047	+	AK302134 TSC_hg19_v1_chr19_-_14247402 BC036521 AK001466 NM_018154	-184	-	AB104486 AB463417 CR457235 GQ129346 GQ129347 AF279307 BC007726 BC010014 BC002518 TSC_hg19_v1_chr19_-_14247395 AK223080 AK001288	-274	-	TSC_hg19_v1_chr19_-_14228563 AK290147	-19037	-	TSC_hg19_v1_chr19_+_14247979 BX537706	385	+	BC013275 BC072445 AK022001 TSC_hg19_v1_chr19_-_14260830 BC090949	13194	-	AF307079 AB020628 NM_001008701 NM_014921 TSC_hg19_v1_chr19_-_14317074	69442	-	AK302134|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##BC036521|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##AK001466|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##NM_018154|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##AB104486|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##CR457235|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##GQ129346|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##GQ129347|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##AF279307|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##BC007726|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##BC010014|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##AK223080|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##AK001288|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##AK290147|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##BX537706|LOC100507373|100507373|uncharacterized LOC100507373##BC013275|LPHN1|22859|latrophilin 1##BC072445|LPHN1|22859|latrophilin 1##AK022001|LPHN1|22859|latrophilin 1##BC090949|LPHN1|22859|latrophilin 1##AF307079|LPHN1|22859|latrophilin 1##AB020628|LPHN1|22859|latrophilin 1##NM_001008701|LPHN1|22859|latrophilin 1##NM_014921|LPHN1|22859|latrophilin 1	0.924908	denovo_WM_21:-65:0.899
chr17	8534224	8534371	reg1000323.p2	9.046	+	TSC_hg19_v1_chr17_-_8534040 M69181 AB210026 BC144668 BC150634 NM_005964 U34304 AB621820	-251	-	BC008968 TSC_hg19_v1_chr17_-_8424250	-110061	-	TSC_hg19_v1_chr17_+_8339211 AK299559 AF217798 AK056014 NM_001025579 NM_030808 BC026101 AF182078 AY004871	-195107	+	BC029224 AK057296 NM_001158261 NM_144681	113831	-	BC146949 BC146966 BC171861 NM_001128076	127579	-	CU691888 BC040487 AK093092 AX747916 AY129026 NM_152599	168255	-	M69181|MYH10|4628|myosin, heavy chain 10, non-muscle##AB210026|MYH10|4628|myosin, heavy chain 10, non-muscle##BC144668|MYH10|4628|myosin, heavy chain 10, non-muscle##BC150634|MYH10|4628|myosin, heavy chain 10, non-muscle##NM_005964|MYH10|4628|myosin, heavy chain 10, non-muscle##U34304|MYH10|4628|myosin, heavy chain 10, non-muscle##BC008968|MYH10|4628|myosin, heavy chain 10, non-muscle##AK299559|NDEL1|81565|nudE nuclear distribution gene E homolog (A. nidulans)-like 1##AF217798|NDEL1|81565|nudE nuclear distribution gene E homolog (A. nidulans)-like 1##AK056014|NDEL1|81565|nudE nuclear distribution gene E homolog (A. nidulans)-like 1##NM_001025579|NDEL1|81565|nudE nuclear distribution gene E homolog (A. nidulans)-like 1##NM_030808|NDEL1|81565|nudE nuclear distribution gene E homolog (A. nidulans)-like 1##BC026101|NDEL1|81565|nudE nuclear distribution gene E homolog (A. nidulans)-like 1##AF182078|NDEL1|81565|nudE nuclear distribution gene E homolog (A. nidulans)-like 1##AY004871|NDEL1|81565|nudE nuclear distribution gene E homolog (A. nidulans)-like 1##BC029224|CCDC42|146849|coiled-coil domain containing 42##AK057296|CCDC42|146849|coiled-coil domain containing 42##NM_001158261|CCDC42|146849|coiled-coil domain containing 42##NM_144681|CCDC42|146849|coiled-coil domain containing 42##BC146949|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##BC146966|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##BC171861|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##NM_001128076|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##BC040487|MFSD6L|162387|major facilitator superfamily domain containing 6-like##AK093092|MFSD6L|162387|major facilitator superfamily domain containing 6-like##AY129026|MFSD6L|162387|major facilitator superfamily domain containing 6-like##NM_152599|MFSD6L|162387|major facilitator superfamily domain containing 6-like	0.947865	denovo_WM_21:-43:0.935
chr19	45394285	45394434	reg1000158.p2	9.041	+	BC003091 TSC_hg19_v1_chr19_+_45349584 AF058448 AB528739 DQ891829 DQ895015 CR456818 X80038 CU678368	-44676	+	TSC_hg19_v1_chr19_+_45349564 AK291330	-44796	+	NM_001042724 NM_002856 TSC_hg19_v1_chr19_+_45349482	-44917	+	TSC_hg19_v1_chr19_+_45394505 NM_001128916 NM_001128917 NM_006114 BC047528 AF043250	125	+	TSC_hg19_v1_chr19_+_45394522 BC001779 BC012134 BC006413	181	+	TSC_hg19_v1_chr19_+_45394570 BC017224	212	+	BC003091|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)##AF058448|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)##DQ891829|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)##DQ895015|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)##CR456818|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)##X80038|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)##AK291330|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)##NM_001042724|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)##NM_002856|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)##NM_001128916|TOMM40|10452|translocase of outer mitochondrial membrane 40 homolog (yeast)##NM_001128917|TOMM40|10452|translocase of outer mitochondrial membrane 40 homolog (yeast)##NM_006114|TOMM40|10452|translocase of outer mitochondrial membrane 40 homolog (yeast)##BC047528|TOMM40|10452|translocase of outer mitochondrial membrane 40 homolog (yeast)##AF043250|TOMM40|10452|translocase of outer mitochondrial membrane 40 homolog (yeast)##BC001779|TOMM40|10452|translocase of outer mitochondrial membrane 40 homolog (yeast)##BC012134|TOMM40|10452|translocase of outer mitochondrial membrane 40 homolog (yeast)##BC006413|TOMM40|10452|translocase of outer mitochondrial membrane 40 homolog (yeast)##BC017224|TOMM40|10452|translocase of outer mitochondrial membrane 40 homolog (yeast)	3.098382	denovo_WM_21:48:0.810	denovo_WM_21:-50:0.967	denovo_WM_21:-73:0.849	denovo_WM_21:102:0.236
chr19	17970554	17970686	reg1000288.p1	9.030	+	TSC_hg19_v1_chr19_-_17958822 U31601 AK296383 NM_000215 AK304392	-11774	-	TSC_hg19_v1_chr19_-_17958781 BC028068	-11831	-	BC032810 BC040435 BC053345 BC061886 BC106721 BC071706 BC106722 NM_005543 S72482 AK302780 AY082014	-38273	-	TSC_hg19_v1_chr19_+_17970726 BC066319 AK297323 AK222647 AK311774 D28393 NM_000980 AK297358 AK300809 BC007512 BC071920 L05093 X80822 AB528676 CU688140	97	+	BX648217 NM_000453 U66088 D87920	12210	+	TSC_hg19_v1_chr19_+_18043824 NM_001136203	73204	+	U31601|JAK3|3718|Janus kinase 3##AK296383|JAK3|3718|Janus kinase 3##NM_000215|JAK3|3718|Janus kinase 3##AK304392|JAK3|3718|Janus kinase 3##BC028068|JAK3|3718|Janus kinase 3##BC032810|INSL3|3640|insulin-like 3 (Leydig cell)##BC040435|INSL3|3640|insulin-like 3 (Leydig cell)##BC053345|INSL3|3640|insulin-like 3 (Leydig cell)##BC061886|INSL3|3640|insulin-like 3 (Leydig cell)##BC106721|INSL3|3640|insulin-like 3 (Leydig cell)##BC071706|INSL3|3640|insulin-like 3 (Leydig cell)##BC106722|INSL3|3640|insulin-like 3 (Leydig cell)##NM_005543|INSL3|3640|insulin-like 3 (Leydig cell)##S72482|INSL3|3640|insulin-like 3 (Leydig cell)##AK302780|INSL3|3640|insulin-like 3 (Leydig cell)##AY082014|INSL3|3640|insulin-like 3 (Leydig cell)##BC066319|RPL18A|6142|ribosomal protein L18a##AK297323|RPL18A|6142|ribosomal protein L18a##AK222647|RPL18A|6142|ribosomal protein L18a##AK311774|RPL18A|6142|ribosomal protein L18a##D28393|RPL18A|6142|ribosomal protein L18a##NM_000980|RPL18A|6142|ribosomal protein L18a##AK297358|RPL18A|6142|ribosomal protein L18a##AK300809|RPL18A|6142|ribosomal protein L18a##BC007512|RPL18A|6142|ribosomal protein L18a##BC071920|RPL18A|6142|ribosomal protein L18a##L05093|RPL18A|6142|ribosomal protein L18a##X80822|RPL18A|6142|ribosomal protein L18a##BX648217|SLC5A5|6528|solute carrier family 5 (sodium iodide symporter), member 5##NM_000453|SLC5A5|6528|solute carrier family 5 (sodium iodide symporter), member 5##U66088|SLC5A5|6528|solute carrier family 5 (sodium iodide symporter), member 5##D87920|SLC5A5|6528|solute carrier family 5 (sodium iodide symporter), member 5##NM_001136203|CCDC124|115098|coiled-coil domain containing 124	1.11202	denovo_WM_21:-6:0.598	denovo_WM_21:34:0.514
chr1	19229264	19229427	reg1000325.p2	9.027	+	AB587364 DQ893505 DQ896489 TSC_hg19_v1_chr1_-_19229045 FJ462711 BC007581 BC023600 AK222486 U24266 U24267 AK289972 NM_003748 NM_170726	-191	-	AK294552 NM_001161504	-11961	-	NM_152232 AB527225	-43190	-	TSC_hg19_v1_chr1_-_19282773 NM_001136265	53454	-	AF348492 NM_020765 TSC_hg19_v1_chr1_-_19536751 BC041137	307401	-	TSC_hg19_v1_chr1_-_19578013 D42044 AB384435 CU689920 BX648708	348647	-	DQ893505|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##DQ896489|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##FJ462711|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##BC007581|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##BC023600|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##AK222486|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##U24266|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##U24267|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##AK289972|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##NM_003748|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##NM_170726|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##AK294552|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##NM_001161504|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##NM_152232|TAS1R2|80834|taste receptor, type 1, member 2##NM_001136265|IFFO2|126917|intermediate filament family orphan 2##AF348492|UBR4|23352|ubiquitin protein ligase E3 component n-recognin 4##NM_020765|UBR4|23352|ubiquitin protein ligase E3 component n-recognin 4##BC041137|UBR4|23352|ubiquitin protein ligase E3 component n-recognin 4##D42044|KIAA0090|23065|KIAA0090##BX648708|KIAA0090|23065|KIAA0090	1.909726	denovo_WM_21:14:0.947	denovo_WM_21:76:0.870
chr2	64978189	64978301	reg1000247.p1	9.027	+	TSC_hg19_v1_chr2_-_64881051 D50917 NM_014755 AK311117	-97198	-	BC074788 BC074789 BC101639 BC101641 TSC_hg19_v1_chr2_-_64880905	-97396	-	TSC_hg19_v1_chr2_+_64751580 AL833962	-226643	+	TSC_hg19_v1_chr2_-_65090764 AK097952	112496	-	TSC_hg19_v1_chr2_-_65159574 BC037562	181332	-	TSC_hg19_v1_chr2_+_65215619 NM_001193493 AK295687	237355	+	D50917|SERTAD2|9792|SERTA domain containing 2##NM_014755|SERTAD2|9792|SERTA domain containing 2##AK311117|SERTAD2|9792|SERTA domain containing 2##BC074788|SERTAD2|9792|SERTA domain containing 2##BC074789|SERTAD2|9792|SERTA domain containing 2##BC101639|SERTAD2|9792|SERTA domain containing 2##BC101641|SERTAD2|9792|SERTA domain containing 2##AL833962|AFTPH|54812|aftiphilin##BC037562|LOC400958|400958|uncharacterized LOC400958##NM_001193493|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK295687|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	0.0	
chr19	56159255	56159437	reg1000190.p1	9.017	+	NM_013301	-393	+	TSC_hg19_v1_chr19_+_56155014 AF151023 AK026203 NM_016535 BC010097 AK315603 BC001219 BC071845	-4344	+	NM_016202 NM_001163423	-5907	+	AF054984 U79303 AK097095 TSC_hg19_v1_chr19_+_56159577 GU354321 GU354322 GU354323	162	+	NM_001012478 NM_007279 TSC_hg19_v1_chr19_+_56165489 AK311672 BC030574	6117	+	TSC_hg19_v1_chr19_+_56166394 BC008740	7052	+	NM_013301|CCDC106|29903|coiled-coil domain containing 106##AF151023|ZNF581|51545|zinc finger protein 581##AK026203|ZNF581|51545|zinc finger protein 581##NM_016535|ZNF581|51545|zinc finger protein 581##BC010097|ZNF581|51545|zinc finger protein 581##AK315603|ZNF581|51545|zinc finger protein 581##BC001219|ZNF581|51545|zinc finger protein 581##BC071845|ZNF581|51545|zinc finger protein 581##NM_016202|ZNF580|51157|zinc finger protein 580##NM_001163423|ZNF580|51157|zinc finger protein 580##AF054984|CCDC106|29903|coiled-coil domain containing 106##U79303|CCDC106|29903|coiled-coil domain containing 106##AK097095|CCDC106|29903|coiled-coil domain containing 106##GU354321|CCDC106|29903|coiled-coil domain containing 106##GU354322|CCDC106|29903|coiled-coil domain containing 106##GU354323|CCDC106|29903|coiled-coil domain containing 106##NM_001012478|U2AF2|11338|U2 small nuclear RNA auxiliary factor 2##NM_007279|U2AF2|11338|U2 small nuclear RNA auxiliary factor 2##AK311672|U2AF2|11338|U2 small nuclear RNA auxiliary factor 2##BC030574|U2AF2|11338|U2 small nuclear RNA auxiliary factor 2##BC008740|U2AF2|11338|U2 small nuclear RNA auxiliary factor 2	0.0	
chr7	112579944	112580068	reg1000372.p1	8.998	+	AL834437 AK299901 TSC_hg19_v1_chr7_-_112579931 BC114615 AK056380 NM_152556	-176	-	AK293311 TSC_hg19_v1_chr7_-_112430447 AK314460 AL136626 AK025482 NM_022484	-149563	-	NM_001134468 BC031976 AK096894 NM_182597	-459020	+	AK297464 AK312587 NM_001146266 AL161959 NM_001146267 TSC_hg19_v1_chr7_-_112726667	146489	-	BC030577 TSC_hg19_v1_chr7_-_112727780	147774	-	TSC_hg19_v1_chr7_-_112727812 AK309392 AF250237 AK302769	147801	-	AL834437|C7orf60|154743|chromosome 7 open reading frame 60##AK299901|C7orf60|154743|chromosome 7 open reading frame 60##BC114615|C7orf60|154743|chromosome 7 open reading frame 60##AK056380|C7orf60|154743|chromosome 7 open reading frame 60##NM_152556|C7orf60|154743|chromosome 7 open reading frame 60##AK293311|TMEM168|64418|transmembrane protein 168##AK314460|TMEM168|64418|transmembrane protein 168##AL136626|TMEM168|64418|transmembrane protein 168##AK025482|TMEM168|64418|transmembrane protein 168##NM_022484|TMEM168|64418|transmembrane protein 168##NM_001134468|C7orf53|286006|chromosome 7 open reading frame 53##BC031976|C7orf53|286006|chromosome 7 open reading frame 53##AK096894|C7orf53|286006|chromosome 7 open reading frame 53##NM_182597|C7orf53|286006|chromosome 7 open reading frame 53##AK297464|GPR85|54329|G protein-coupled receptor 85##AK312587|GPR85|54329|G protein-coupled receptor 85##NM_001146266|GPR85|54329|G protein-coupled receptor 85##AL161959|GPR85|54329|G protein-coupled receptor 85##NM_001146267|GPR85|54329|G protein-coupled receptor 85##BC030577|GPR85|54329|G protein-coupled receptor 85##AK309392|GPR85|54329|G protein-coupled receptor 85##AF250237|GPR85|54329|G protein-coupled receptor 85##AK302769|GPR85|54329|G protein-coupled receptor 85	0.720471	denovo_WM_21:12:0.720
chr3	197686839	197686997	reg1000489.p1	8.953	+	BC016156 TSC_hg19_v1_chr3_-_197686873 AK095094 AL136889 NM_032263	-54	-	BC010949 TSC_hg19_v1_chr3_+_197677063 AY871273 NM_000996 AB055768 X52966 AK026542 BC001037 BC061890 BC017093	-9842	+	BC068973 TSC_hg19_v1_chr3_-_197676768 AK027224 NM_001134435	-10143	-	AJ312398 AJ312399 NM_001136049 NM_033029 TSC_hg19_v1_chr3_+_197687092 AL832783 AB527180 AM920777 AK299119 AM920778	180	+	BC042518 TSC_hg19_v1_chr3_-_197807579 BC053879	120657	-	NM_001145248	192318	+	BC016156|IQCG|84223|IQ motif containing G##AK095094|IQCG|84223|IQ motif containing G##AL136889|IQCG|84223|IQ motif containing G##NM_032263|IQCG|84223|IQ motif containing G##BC010949|RPL35A|6165|ribosomal protein L35a##AY871273|RPL35A|6165|ribosomal protein L35a##NM_000996|RPL35A|6165|ribosomal protein L35a##AB055768|RPL35A|6165|ribosomal protein L35a##X52966|RPL35A|6165|ribosomal protein L35a##AK026542|RPL35A|6165|ribosomal protein L35a##BC001037|RPL35A|6165|ribosomal protein L35a##BC061890|RPL35A|6165|ribosomal protein L35a##BC017093|RPL35A|6165|ribosomal protein L35a##BC068973|IQCG|84223|IQ motif containing G##AK027224|IQCG|84223|IQ motif containing G##NM_001134435|IQCG|84223|IQ motif containing G##AJ312398|LMLN|89782|leishmanolysin-like (metallopeptidase M8 family)##AJ312399|LMLN|89782|leishmanolysin-like (metallopeptidase M8 family)##NM_001136049|LMLN|89782|leishmanolysin-like (metallopeptidase M8 family)##NM_033029|LMLN|89782|leishmanolysin-like (metallopeptidase M8 family)##AL832783|LMLN|89782|leishmanolysin-like (metallopeptidase M8 family)##AM920777|LMLN|89782|leishmanolysin-like (metallopeptidase M8 family)##AK299119|LMLN|89782|leishmanolysin-like (metallopeptidase M8 family)##AM920778|LMLN|89782|leishmanolysin-like (metallopeptidase M8 family)##BC042518|ANKRD18DP|348840|ankyrin repeat domain 18D, pseudogene##BC053879|ANKRD18DP|348840|ankyrin repeat domain 18D, pseudogene##NM_001145248|FAM157A|728262|family with sequence similarity 157, member A	1.1294	denovo_WM_21:-3:0.236	denovo_WM_21:83:0.893
chr15	74890687	74890830	reg1000366.p2	8.944	+	AK302034 TSC_hg19_v1_chr15_+_74833575 BC045545 NM_006465 AF116846 AK298716 BC041792 AB208830 BC060824	-57198	+	TSC_hg19_v1_chr15_+_74753647 BC014373 AF085896	-137107	+	TSC_hg19_v1_chr15_-_74753521 BC030055 NM_032907 NM_201265	-137246	-	L29217 L29220 NM_003992	9954	+	AK091692 AX747131 NM_001130028	16576	+	AK293769 TSC_hg19_v1_chr15_+_74908195 BC019881 CR933693 AK291983 AK301689 BC002555 AK225680 BC006103	17463	+	AK302034|ARID3B|10620|AT rich interactive domain 3B (BRIGHT-like)##BC045545|ARID3B|10620|AT rich interactive domain 3B (BRIGHT-like)##NM_006465|ARID3B|10620|AT rich interactive domain 3B (BRIGHT-like)##AF116846|ARID3B|10620|AT rich interactive domain 3B (BRIGHT-like)##AK298716|ARID3B|10620|AT rich interactive domain 3B (BRIGHT-like)##BC041792|ARID3B|10620|AT rich interactive domain 3B (BRIGHT-like)##AB208830|ARID3B|10620|AT rich interactive domain 3B (BRIGHT-like)##BC060824|ARID3B|10620|AT rich interactive domain 3B (BRIGHT-like)##BC014373|LOC440288|440288|uncharacterized LOC440288##AF085896|LOC440288|440288|uncharacterized LOC440288##BC030055|UBL7|84993|ubiquitin-like 7 (bone marrow stromal cell-derived)##NM_032907|UBL7|84993|ubiquitin-like 7 (bone marrow stromal cell-derived)##NM_201265|UBL7|84993|ubiquitin-like 7 (bone marrow stromal cell-derived)##L29217|CLK3|1198|CDC-like kinase 3##L29220|CLK3|1198|CDC-like kinase 3##NM_003992|CLK3|1198|CDC-like kinase 3##AK091692|CLK3|1198|CDC-like kinase 3##NM_001130028|CLK3|1198|CDC-like kinase 3##AK293769|CLK3|1198|CDC-like kinase 3##BC019881|CLK3|1198|CDC-like kinase 3##CR933693|CLK3|1198|CDC-like kinase 3##AK291983|CLK3|1198|CDC-like kinase 3##AK301689|CLK3|1198|CDC-like kinase 3##BC002555|CLK3|1198|CDC-like kinase 3##AK225680|CLK3|1198|CDC-like kinase 3##BC006103|CLK3|1198|CDC-like kinase 3	0.992513	denovo_WM_21:22:0.972
chr10	101380252	101380406	reg1000346.p1	8.941	+	TSC_hg19_v1_chr10_-_101380229 NM_031212	-106	-	BC076399 TSC_hg19_v1_chr10_-_101380197 BC047312	-149	-	TSC_hg19_v1_chr10_-_101380086 AF327403 AJ303078 AF327402 AJ303077 BC058937	-222	-	TSC_hg19_v1_chr10_+_101419285 AK314542 AK055540 AK309735 NM_020354 BC119008 BC122857 AF269255	38905	+	BT007129 DQ890710 DQ893892 BC002382 BC013403 TSC_hg19_v1_chr10_-_101491845 BC078161 AK291654 AK298864	111500	-	AF026850 AF044323 TSC_hg19_v1_chr10_-_101491885	111547	-	NM_031212|SLC25A28|81894|solute carrier family 25, member 28##BC076399|SLC25A28|81894|solute carrier family 25, member 28##BC047312|SLC25A28|81894|solute carrier family 25, member 28##AF327403|SLC25A28|81894|solute carrier family 25, member 28##AJ303078|SLC25A28|81894|solute carrier family 25, member 28##AF327402|SLC25A28|81894|solute carrier family 25, member 28##AJ303077|SLC25A28|81894|solute carrier family 25, member 28##BC058937|SLC25A28|81894|solute carrier family 25, member 28##AK314542|ENTPD7|57089|ectonucleoside triphosphate diphosphohydrolase 7##AK055540|ENTPD7|57089|ectonucleoside triphosphate diphosphohydrolase 7##AK309735|ENTPD7|57089|ectonucleoside triphosphate diphosphohydrolase 7##NM_020354|ENTPD7|57089|ectonucleoside triphosphate diphosphohydrolase 7##BC119008|ENTPD7|57089|ectonucleoside triphosphate diphosphohydrolase 7##BC122857|ENTPD7|57089|ectonucleoside triphosphate diphosphohydrolase 7##AF269255|ENTPD7|57089|ectonucleoside triphosphate diphosphohydrolase 7##BT007129|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)##DQ890710|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)##DQ893892|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)##BC002382|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)##BC013403|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)##BC078161|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)##AK291654|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)##AK298864|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)##AF026850|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)##AF044323|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)	0.811845	denovo_WM_21:83:0.692
chr21	30397220	30397323	reg1000415.p2	8.933	+	TSC_hg19_v1_chr21_+_30396981 NM_001001992 NM_001032410 NM_006447 AK025104 AK025989 AK294284 BC030777 BC010375 AK222681 AF126736 AY333928 AK222884 AK300771	-280	+	CU676110 TSC_hg19_v1_chr21_-_30391645 AF212232 BC012546 Y19009 BC017912 AK000056 AL355727 NM_016940 AK223357	-5624	-	BC007525 AB384515 TSC_hg19_v1_chr21_-_30365185 AF161350 AB018257 BC150284 AB621822 BC029371 BC140790 AK001915 BC031633 NM_015565	-32078	-	DQ892395 DQ895610 TSC_hg19_v1_chr21_+_30400257	2972	+	AB590043 BC035472 TSC_hg19_v1_chr21_-_30445937 AK222490 D13627	48659	-	TSC_hg19_v1_chr21_-_30445966 BC012584 BC095470	48686	-	NM_001001992|USP16|10600|ubiquitin specific peptidase 16##NM_001032410|USP16|10600|ubiquitin specific peptidase 16##NM_006447|USP16|10600|ubiquitin specific peptidase 16##AK025104|USP16|10600|ubiquitin specific peptidase 16##AK025989|USP16|10600|ubiquitin specific peptidase 16##AK294284|USP16|10600|ubiquitin specific peptidase 16##BC030777|USP16|10600|ubiquitin specific peptidase 16##BC010375|USP16|10600|ubiquitin specific peptidase 16##AK222681|USP16|10600|ubiquitin specific peptidase 16##AF126736|USP16|10600|ubiquitin specific peptidase 16##AY333928|USP16|10600|ubiquitin specific peptidase 16##AK222884|USP16|10600|ubiquitin specific peptidase 16##AK300771|USP16|10600|ubiquitin specific peptidase 16##AF212232|RWDD2B|10069|RWD domain containing 2B##BC012546|RWDD2B|10069|RWD domain containing 2B##Y19009|RWDD2B|10069|RWD domain containing 2B##BC017912|RWDD2B|10069|RWD domain containing 2B##AK000056|RWDD2B|10069|RWD domain containing 2B##AL355727|RWDD2B|10069|RWD domain containing 2B##NM_016940|RWDD2B|10069|RWD domain containing 2B##AK223357|RWDD2B|10069|RWD domain containing 2B##BC007525|LTN1|26046|listerin E3 ubiquitin protein ligase 1##AF161350|LTN1|26046|listerin E3 ubiquitin protein ligase 1##AB018257|LTN1|26046|listerin E3 ubiquitin protein ligase 1##BC150284|LTN1|26046|listerin E3 ubiquitin protein ligase 1##BC029371|LTN1|26046|listerin E3 ubiquitin protein ligase 1##BC140790|LTN1|26046|listerin E3 ubiquitin protein ligase 1##AK001915|LTN1|26046|listerin E3 ubiquitin protein ligase 1##BC031633|LTN1|26046|listerin E3 ubiquitin protein ligase 1##NM_015565|LTN1|26046|listerin E3 ubiquitin protein ligase 1##DQ892395|USP16|10600|ubiquitin specific peptidase 16##DQ895610|USP16|10600|ubiquitin specific peptidase 16##BC035472|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##AK222490|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##D13627|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##BC012584|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##BC095470|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)	1.640301	denovo_WM_21:13:0.770	denovo_WM_21:-23:0.870
chr13	29293138	29293257	reg1000348.p1	8.932	+	BX537565 BC060850 BC068556 TSC_hg19_v1_chr13_-_29293107 AK093932 AX748370 BC036662 NM_001135919 NM_181785	-142	-	TSC_hg19_v1_chr13_+_29233279 AF275807 EF535527 AF262975	-59903	+	GU045555 GU045556 NM_015932 TSC_hg19_v1_chr13_+_29233269 AF077200 AF125097 BC014334 AK312118 BC003390	-59989	+	BC150245 AB018317 NM_001033602 AB384524	305578	+	BC032481 NM_015233 AK293970 BC119654 BC119655 BC129985	709613	+	AK301633 TSC_hg19_v1_chr13_+_30070532	777310	+	BX537565|SLC46A3|283537|solute carrier family 46, member 3##BC060850|SLC46A3|283537|solute carrier family 46, member 3##BC068556|SLC46A3|283537|solute carrier family 46, member 3##AK093932|SLC46A3|283537|solute carrier family 46, member 3##BC036662|SLC46A3|283537|solute carrier family 46, member 3##NM_001135919|SLC46A3|283537|solute carrier family 46, member 3##NM_181785|SLC46A3|283537|solute carrier family 46, member 3##AF275807|POMP|51371|proteasome maturation protein##EF535527|POMP|51371|proteasome maturation protein##AF262975|POMP|51371|proteasome maturation protein##GU045555|POMP|51371|proteasome maturation protein##GU045556|POMP|51371|proteasome maturation protein##NM_015932|POMP|51371|proteasome maturation protein##AF077200|POMP|51371|proteasome maturation protein##AF125097|POMP|51371|proteasome maturation protein##BC014334|POMP|51371|proteasome maturation protein##AK312118|POMP|51371|proteasome maturation protein##BC003390|POMP|51371|proteasome maturation protein##BC150245|MTUS2|23281|microtubule associated tumor suppressor candidate 2##AB018317|MTUS2|23281|microtubule associated tumor suppressor candidate 2##NM_001033602|MTUS2|23281|microtubule associated tumor suppressor candidate 2##BC032481|MTUS2|23281|microtubule associated tumor suppressor candidate 2##NM_015233|MTUS2|23281|microtubule associated tumor suppressor candidate 2##AK293970|MTUS2|23281|microtubule associated tumor suppressor candidate 2##BC119654|MTUS2|23281|microtubule associated tumor suppressor candidate 2##BC119655|MTUS2|23281|microtubule associated tumor suppressor candidate 2##BC129985|MTUS2|23281|microtubule associated tumor suppressor candidate 2##AK301633|MTUS2|23281|microtubule associated tumor suppressor candidate 2	0.377579	denovo_WM_21:1:0.316
chr17	59940884	59941025	reg1000445.p1	8.924	+	BC101472 BC101474 AF360549 TSC_hg19_v1_chr17_-_59940873 NM_032043	-160	-	CU687600 BC062710 NM_199290 TSC_hg19_v1_chr17_-_59668583	-272392	-	AF188703 NM_018488 BC136403 BC144062 AB464284	-407126	+	TSC_hg19_v1_chr17_-_60005339 AB033113 AK308307 AK299032 AL136800 NM_020748	64388	-	TSC_hg19_v1_chr17_-_60142600 BC140891 AF117754 NM_005121	201673	-	NM_001144933	506624	+	BC101472|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##BC101474|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##AF360549|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##NM_032043|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##BC062710|NACA2|342538|nascent polypeptide-associated complex alpha subunit 2##NM_199290|NACA2|342538|nascent polypeptide-associated complex alpha subunit 2##AF188703|TBX4|9496|T-box 4##NM_018488|TBX4|9496|T-box 4##BC136403|TBX4|9496|T-box 4##BC144062|TBX4|9496|T-box 4##AB033113|INTS2|57508|integrator complex subunit 2##AK308307|INTS2|57508|integrator complex subunit 2##AK299032|INTS2|57508|integrator complex subunit 2##AL136800|INTS2|57508|integrator complex subunit 2##NM_020748|INTS2|57508|integrator complex subunit 2##BC140891|MED13|9969|mediator complex subunit 13##AF117754|MED13|9969|mediator complex subunit 13##NM_005121|MED13|9969|mediator complex subunit 13##NM_001144933|EFCAB3|146779|EF-hand calcium binding domain 3	0.637141	denovo_WM_21:51:0.637
chr14	53019416	53019546	reg1000365.p2	8.919	+	TSC_hg19_v1_chr14_-_53019222 AK097748 BC137081 BC137082 BC144469 AB037765 BC152428 BC150205 BC142650 NM_001160047 NM_020784	-309	-	TSC_hg19_v1_chr14_+_52781029 NM_000956 U19487 BC093927 BC093929 AY275471 X83868	-238346	+	BC040968 NM_000953 AB464671 EF577397	-285000	+	NM_001099652 AY255590 AK123953 AL834372	454	+	CU679029 CU680454 GQ129372 GQ129373 TSC_hg19_v1_chr14_-_53162248 AK292839	142744	-	AY358463 TSC_hg19_v1_chr14_-_53162404	142906	-	AK097748|TXNDC16|57544|thioredoxin domain containing 16##BC137081|TXNDC16|57544|thioredoxin domain containing 16##BC137082|TXNDC16|57544|thioredoxin domain containing 16##BC144469|TXNDC16|57544|thioredoxin domain containing 16##AB037765|TXNDC16|57544|thioredoxin domain containing 16##BC152428|TXNDC16|57544|thioredoxin domain containing 16##BC150205|TXNDC16|57544|thioredoxin domain containing 16##BC142650|TXNDC16|57544|thioredoxin domain containing 16##NM_001160047|TXNDC16|57544|thioredoxin domain containing 16##NM_020784|TXNDC16|57544|thioredoxin domain containing 16##NM_000956|PTGER2|5732|prostaglandin E receptor 2 (subtype EP2), 53kDa##U19487|PTGER2|5732|prostaglandin E receptor 2 (subtype EP2), 53kDa##BC093927|PTGER2|5732|prostaglandin E receptor 2 (subtype EP2), 53kDa##BC093929|PTGER2|5732|prostaglandin E receptor 2 (subtype EP2), 53kDa##AY275471|PTGER2|5732|prostaglandin E receptor 2 (subtype EP2), 53kDa##X83868|PTGER2|5732|prostaglandin E receptor 2 (subtype EP2), 53kDa##BC040968|PTGDR|5729|prostaglandin D2 receptor (DP)##NM_000953|PTGDR|5729|prostaglandin D2 receptor (DP)##EF577397|PTGDR|5729|prostaglandin D2 receptor (DP)##NM_001099652|GPR137C|283554|G protein-coupled receptor 137C##AY255590|GPR137C|283554|G protein-coupled receptor 137C##AK123953|GPR137C|283554|G protein-coupled receptor 137C##AL834372|GPR137C|283554|G protein-coupled receptor 137C##GQ129372|ERO1L|30001|ERO1-like (S. cerevisiae)##GQ129373|ERO1L|30001|ERO1-like (S. cerevisiae)##AK292839|ERO1L|30001|ERO1-like (S. cerevisiae)##AY358463|ERO1L|30001|ERO1-like (S. cerevisiae)	1.803183	denovo_WM_21:58:0.856	denovo_WM_21:-86:0.923
chr9	35072700	35072868	reg1000230.p1	8.919	+	TSC_hg19_v1_chr9_-_35072646 NM_007126	-94	-	TSC_hg19_v1_chr9_-_35072623 BC096751 AK312310 BC012195 BC017171 BC021055	-168	-	BC121794 BC122550 BC110913 TSC_hg19_v1_chr9_-_35072566 AF100752	-227	-	BT009813 CU674000 AB464437 DQ892166 DQ895360 U70310 BC000032 TSC_hg19_v1_chr9_-_35079678 AK311348	6820	-	TSC_hg19_v1_chr9_-_35079753 BC011623 AK293427 AK312987 AJ007669 NM_004629	7097	-	NM_001201484 NM_032634 AK090433 TSC_hg19_v1_chr9_-_35096578 AK074064 NM_152850	23816	-	NM_007126|VCP|7415|valosin containing protein##BC096751|VCP|7415|valosin containing protein##AK312310|VCP|7415|valosin containing protein##BC012195|VCP|7415|valosin containing protein##BC017171|VCP|7415|valosin containing protein##BC121794|VCP|7415|valosin containing protein##BC122550|VCP|7415|valosin containing protein##BC110913|VCP|7415|valosin containing protein##AF100752|VCP|7415|valosin containing protein##BT009813|FANCG|2189|Fanconi anemia, complementation group G##DQ892166|FANCG|2189|Fanconi anemia, complementation group G##DQ895360|FANCG|2189|Fanconi anemia, complementation group G##U70310|FANCG|2189|Fanconi anemia, complementation group G##BC000032|FANCG|2189|Fanconi anemia, complementation group G##AK311348|FANCG|2189|Fanconi anemia, complementation group G##BC011623|FANCG|2189|Fanconi anemia, complementation group G##AK293427|FANCG|2189|Fanconi anemia, complementation group G##AK312987|FANCG|2189|Fanconi anemia, complementation group G##AJ007669|FANCG|2189|Fanconi anemia, complementation group G##NM_004629|FANCG|2189|Fanconi anemia, complementation group G##NM_001201484|PIGO|84720|phosphatidylinositol glycan anchor biosynthesis, class O##NM_032634|PIGO|84720|phosphatidylinositol glycan anchor biosynthesis, class O##AK090433|PIGO|84720|phosphatidylinositol glycan anchor biosynthesis, class O##AK074064|PIGO|84720|phosphatidylinositol glycan anchor biosynthesis, class O##NM_152850|PIGO|84720|phosphatidylinositol glycan anchor biosynthesis, class O	2.768407	denovo_WM_21:-37:0.943	denovo_WM_21:76:0.831	denovo_WM_21:-108:0.966
chr3	119813713	119813897	reg1000309.p1	8.914	+	TSC_hg19_v1_chr3_+_119813618 BC035247	-135	+	TSC_hg19_v1_chr3_-_119813270 BC012760 NM_001146156 NM_002093	-654	-	BC000251 AK290897 TSC_hg19_v1_chr3_-_119812684	-1184	-	NM_001168271 NM_153002	149336	-	TSC_hg19_v1_chr3_-_120068162 AB528173 AM393236 BC013757 NM_001099678	254336	-	TSC_hg19_v1_chr3_-_120169846 AB527652 D89937 BC000055 U06863 AK300356 AK289388 AK291138 AK311050 AK300436 BX647421 AK312261 NM_007085	356032	-	BC012760|GSK3B|2932|glycogen synthase kinase 3 beta##NM_001146156|GSK3B|2932|glycogen synthase kinase 3 beta##NM_002093|GSK3B|2932|glycogen synthase kinase 3 beta##BC000251|GSK3B|2932|glycogen synthase kinase 3 beta##AK290897|GSK3B|2932|glycogen synthase kinase 3 beta##NM_001168271|GPR156|165829|G protein-coupled receptor 156##NM_153002|GPR156|165829|G protein-coupled receptor 156##AM393236|LRRC58|116064|leucine rich repeat containing 58##BC013757|LRRC58|116064|leucine rich repeat containing 58##NM_001099678|LRRC58|116064|leucine rich repeat containing 58##BC000055|FSTL1|11167|follistatin-like 1##U06863|FSTL1|11167|follistatin-like 1##AK300356|FSTL1|11167|follistatin-like 1##AK289388|FSTL1|11167|follistatin-like 1##AK291138|FSTL1|11167|follistatin-like 1##AK311050|FSTL1|11167|follistatin-like 1##AK300436|FSTL1|11167|follistatin-like 1##BX647421|FSTL1|11167|follistatin-like 1##AK312261|FSTL1|11167|follistatin-like 1##NM_007085|FSTL1|11167|follistatin-like 1	1.005347	denovo_WM_21:-21:0.945
chr16	87422017	87422180	reg1000471.p1	8.907	+	TSC_hg19_v1_chr16_-_87417364 AY736035 AF428140 BC012748 BC002985 NM_024735	-4736	-	TSC_hg19_v1_chr16_-_87350999 BC015536 AK026130 NM_001195124 NM_001195125	-71112	-	TSC_hg19_v1_chr16_-_87350760 AB528835 AM392822 AM393070	-71298	-	TSC_hg19_v1_chr16_+_87425387 BC041874	3296	+	TSC_hg19_v1_chr16_+_87425818 NM_022818	3711	+	TSC_hg19_v1_chr16_+_87425938 AK290956 BC048009 AK310224 AK310335 AF087871 AF183417	3811	+	AY736035|FBXO31|79791|F-box protein 31##AF428140|FBXO31|79791|F-box protein 31##BC012748|FBXO31|79791|F-box protein 31##BC002985|FBXO31|79791|F-box protein 31##NM_024735|FBXO31|79791|F-box protein 31##BC015536|C16orf95|100506581|chromosome 16 open reading frame 95##AK026130|C16orf95|100506581|chromosome 16 open reading frame 95##NM_001195124|C16orf95|100506581|chromosome 16 open reading frame 95##NM_001195125|C16orf95|100506581|chromosome 16 open reading frame 95##AM392822|C16orf95|100506581|chromosome 16 open reading frame 95##AM393070|C16orf95|100506581|chromosome 16 open reading frame 95##BC041874|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##NM_022818|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AK290956|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##BC048009|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AK310224|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AK310335|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AF087871|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AF183417|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta	0.107577	
chr19	50270054	50270160	reg1000058.p2	8.902	+	NM_021733 BC058862	-3579	-	TSC_hg19_v1_chr19_+_50194833 AK299866	-75273	+	TSC_hg19_v1_chr19_+_50194384 NM_001136052 NM_001199752 NM_001199753 NM_152359 AK096516 AK289713 AK309087 AK290092 BC029104 AF357970	-75721	+	TSC_hg19_v1_chr19_+_50270224 NM_014203 NM_130787 AK302005	44	+	AK124343 TSC_hg19_v1_chr19_+_50270264	156	+	TSC_hg19_v1_chr19_+_50270274 BC014214 AL136925 DQ892253 DQ895454 AB527855 CU676931	285	+	NM_021733|TSKS|60385|testis-specific serine kinase substrate##BC058862|TSKS|60385|testis-specific serine kinase substrate##AK299866|CPT1C|126129|carnitine palmitoyltransferase 1C##NM_001136052|CPT1C|126129|carnitine palmitoyltransferase 1C##NM_001199752|CPT1C|126129|carnitine palmitoyltransferase 1C##NM_001199753|CPT1C|126129|carnitine palmitoyltransferase 1C##NM_152359|CPT1C|126129|carnitine palmitoyltransferase 1C##AK096516|CPT1C|126129|carnitine palmitoyltransferase 1C##AK289713|CPT1C|126129|carnitine palmitoyltransferase 1C##AK309087|CPT1C|126129|carnitine palmitoyltransferase 1C##AK290092|CPT1C|126129|carnitine palmitoyltransferase 1C##BC029104|CPT1C|126129|carnitine palmitoyltransferase 1C##AF357970|CPT1C|126129|carnitine palmitoyltransferase 1C##NM_014203|AP2A1|160|adaptor-related protein complex 2, alpha 1 subunit##NM_130787|AP2A1|160|adaptor-related protein complex 2, alpha 1 subunit##AK302005|AP2A1|160|adaptor-related protein complex 2, alpha 1 subunit##AK124343|AP2A1|160|adaptor-related protein complex 2, alpha 1 subunit##BC014214|AP2A1|160|adaptor-related protein complex 2, alpha 1 subunit##AL136925|AP2A1|160|adaptor-related protein complex 2, alpha 1 subunit##DQ892253|AP2A1|160|adaptor-related protein complex 2, alpha 1 subunit##DQ895454|AP2A1|160|adaptor-related protein complex 2, alpha 1 subunit	1.373951	denovo_WM_21:14:0.976	denovo_WM_21:-16:0.386
chr17	17875754	17875875	reg1000008.p1	8.877	+	TSC_hg19_v1_chr17_-_17875715 AK124331 AK295111 AK301944 AK303305 AK299872 AF467441 BC051650 AK294846 NM_001033551 NM_001082968	-73	-	TSC_hg19_v1_chr17_-_17740317 BC057388 NM_001005291 NM_004176	-135490	-	TSC_hg19_v1_chr17_-_17740301 U00968 BC063281	-135519	-	NM_001130090 NM_001130091 NM_001130092 NM_031294 TSC_hg19_v1_chr17_+_17876186 BC047873 AL136926 AK293011 BC040276 BC050419 BC050665 AK093317 AX748051	386	+	AM393241 CU678578 CU689282 AB528073 AF070584 BC032126 AF052185 AY203943 TSC_hg19_v1_chr17_-_17942481 BC004114 NM_145691 AK290257 AK294487 AK296382	66589	-	TSC_hg19_v1_chr17_+_17942750 BC041829 NM_024052 AK315083 AK074284 AK127580 BC000636	66993	+	AK124331|TOM1L2|146691|target of myb1-like 2 (chicken)##AK295111|TOM1L2|146691|target of myb1-like 2 (chicken)##AK301944|TOM1L2|146691|target of myb1-like 2 (chicken)##AK303305|TOM1L2|146691|target of myb1-like 2 (chicken)##AK299872|TOM1L2|146691|target of myb1-like 2 (chicken)##AF467441|TOM1L2|146691|target of myb1-like 2 (chicken)##BC051650|TOM1L2|146691|target of myb1-like 2 (chicken)##AK294846|TOM1L2|146691|target of myb1-like 2 (chicken)##NM_001033551|TOM1L2|146691|target of myb1-like 2 (chicken)##NM_001082968|TOM1L2|146691|target of myb1-like 2 (chicken)##BC057388|SREBF1|6720|sterol regulatory element binding transcription factor 1##NM_001005291|SREBF1|6720|sterol regulatory element binding transcription factor 1##NM_004176|SREBF1|6720|sterol regulatory element binding transcription factor 1##U00968|SREBF1|6720|sterol regulatory element binding transcription factor 1##BC063281|SREBF1|6720|sterol regulatory element binding transcription factor 1##NM_001130090|LRRC48|83450|leucine rich repeat containing 48##NM_001130091|LRRC48|83450|leucine rich repeat containing 48##NM_001130092|LRRC48|83450|leucine rich repeat containing 48##NM_031294|LRRC48|83450|leucine rich repeat containing 48##BC047873|LRRC48|83450|leucine rich repeat containing 48##AL136926|LRRC48|83450|leucine rich repeat containing 48##AK293011|LRRC48|83450|leucine rich repeat containing 48##BC040276|LRRC48|83450|leucine rich repeat containing 48##BC050419|LRRC48|83450|leucine rich repeat containing 48##BC050665|LRRC48|83450|leucine rich repeat containing 48##AK093317|LRRC48|83450|leucine rich repeat containing 48##AM393241|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AF070584|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##BC032126|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AF052185|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AY203943|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##BC004114|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##NM_145691|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AK290257|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AK294487|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##BC041829|C17orf39|79018|chromosome 17 open reading frame 39##NM_024052|C17orf39|79018|chromosome 17 open reading frame 39##AK315083|C17orf39|79018|chromosome 17 open reading frame 39##AK074284|C17orf39|79018|chromosome 17 open reading frame 39##AK127580|C17orf39|79018|chromosome 17 open reading frame 39##BC000636|C17orf39|79018|chromosome 17 open reading frame 39	0.911683	denovo_WM_21:1:0.912
chr17	46018756	46018903	reg1000409.p1	8.873	+	NM_003110 TSC_hg19_v1_chr17_+_45973601 BC005914 BC016680 BC033814	-45249	+	TSC_hg19_v1_chr17_-_45973143 AK127217	-45679	-	BC103951 BC103952 BC103953 BC103954 AK127850 NM_199262	-85641	-	NM_018129 TSC_hg19_v1_chr17_+_46018965 AK001397 AK303665 AK303792 AK223242 AK303536 BC006525	115	+	TSC_hg19_v1_chr17_+_46019041 AF468030	217	+	BC002865 NM_024320 TSC_hg19_v1_chr17_-_46035208 AK309589	16353	-	NM_003110|SP2|6668|Sp2 transcription factor##BC005914|SP2|6668|Sp2 transcription factor##BC016680|SP2|6668|Sp2 transcription factor##BC033814|SP2|6668|Sp2 transcription factor##BC103951|SP6|80320|Sp6 transcription factor##BC103952|SP6|80320|Sp6 transcription factor##BC103953|SP6|80320|Sp6 transcription factor##BC103954|SP6|80320|Sp6 transcription factor##AK127850|SP6|80320|Sp6 transcription factor##NM_199262|SP6|80320|Sp6 transcription factor##NM_018129|PNPO|55163|pyridoxamine 5'-phosphate oxidase##AK001397|PNPO|55163|pyridoxamine 5'-phosphate oxidase##AK303665|PNPO|55163|pyridoxamine 5'-phosphate oxidase##AK303792|PNPO|55163|pyridoxamine 5'-phosphate oxidase##AK223242|PNPO|55163|pyridoxamine 5'-phosphate oxidase##AK303536|PNPO|55163|pyridoxamine 5'-phosphate oxidase##BC006525|PNPO|55163|pyridoxamine 5'-phosphate oxidase##AF468030|PNPO|55163|pyridoxamine 5'-phosphate oxidase##BC002865|PRR15L|79170|proline rich 15-like##NM_024320|PRR15L|79170|proline rich 15-like##AK309589|PRR15L|79170|proline rich 15-like	1.413415	denovo_WM_21:-12:0.695	denovo_WM_21:-44:0.403	denovo_WM_21:61:0.233
chr20	34127617	34127789	reg1000353.p1	8.858	+	AK058089 AK310337 NM_001145350	-10240	-	TSC_hg19_v1_chr20_+_34042987 AK307861 AB621828 AF049105 NM_007186	-84629	+	AB593125 U13660 NM_000557	-101713	-	NM_015966 NM_198398 TSC_hg19_v1_chr20_+_34129827 AF308298 AF077030 AF151812 EF206690 BC014014	2099	+	AK074550 BC009765 TSC_hg19_v1_chr20_+_34129829 AK096484 AK300916	2127	+	TSC_hg19_v1_chr20_+_34129833 CU679479 CU680742 AF091085	2142	+	AK058089|C20orf173|140873|chromosome 20 open reading frame 173##AK310337|C20orf173|140873|chromosome 20 open reading frame 173##NM_001145350|C20orf173|140873|chromosome 20 open reading frame 173##AK307861|CEP250|11190|centrosomal protein 250kDa##AF049105|CEP250|11190|centrosomal protein 250kDa##NM_007186|CEP250|11190|centrosomal protein 250kDa##AB593125|GDF5|8200|growth differentiation factor 5##U13660|GDF5|8200|growth differentiation factor 5##NM_000557|GDF5|8200|growth differentiation factor 5##NM_015966|ERGIC3|51614|ERGIC and golgi 3##NM_198398|ERGIC3|51614|ERGIC and golgi 3##AF308298|ERGIC3|51614|ERGIC and golgi 3##AF077030|ERGIC3|51614|ERGIC and golgi 3##AF151812|ERGIC3|51614|ERGIC and golgi 3##EF206690|ERGIC3|51614|ERGIC and golgi 3##BC014014|ERGIC3|51614|ERGIC and golgi 3##AK074550|ERGIC3|51614|ERGIC and golgi 3##BC009765|ERGIC3|51614|ERGIC and golgi 3##AK096484|ERGIC3|51614|ERGIC and golgi 3##AK300916|ERGIC3|51614|ERGIC and golgi 3##AF091085|ERGIC3|51614|ERGIC and golgi 3	1.076918	denovo_WM_21:-33:0.994
chr15	83182927	83183054	reg1000405.p1	8.852	+	NM_198181 CR936812	-84249	+	CR936602 NM_001164465	-164812	-	BC007811 TSC_hg19_v1_chr15_+_82944831 BC065260 AK311124 AK311170 AK026448	-238100	+	BC009407 BC020453 BC019899 BC071928 M13932 AB055777 AK311951 BC070222 BC022370 NM_001021 NM_001199057 BC062715	26246	-	BC035348 AK023265 AK301728 AF329403 NM_001079533 NM_001079534 NM_001079535	57545	-	CU690752 BC050629 NM_030594	133684	-	NM_198181|GOLGA6L9|440295|golgin A6 family-like 9##CR936812|GOLGA6L9|440295|golgin A6 family-like 9##CR936602|LOC643696|643696|uncharacterized LOC643696##NM_001164465|GOLGA6L10|647042|golgin A6 family-like 10##BC007811|AGSK1|80154|golgin subfamily A member 2-like##BC065260|AGSK1|80154|golgin subfamily A member 2-like##AK311124|AGSK1|80154|golgin subfamily A member 2-like##AK311170|AGSK1|80154|golgin subfamily A member 2-like##AK026448|AGSK1|80154|golgin subfamily A member 2-like##BC009407|RPS17|6218|ribosomal protein S17##BC020453|RPS17|6218|ribosomal protein S17##BC019899|RPS17|6218|ribosomal protein S17##BC071928|RPS17|6218|ribosomal protein S17##M13932|RPS17|6218|ribosomal protein S17##AK311951|RPS17|6218|ribosomal protein S17##BC070222|RPS17|6218|ribosomal protein S17##BC022370|RPS17|6218|ribosomal protein S17##NM_001021|RPS17|6218|ribosomal protein S17##NM_001199057|RPS17L|100505503|ribosomal protein S17-like##BC062715|RPS17|6218|ribosomal protein S17##BC035348|CPEB1|64506|cytoplasmic polyadenylation element binding protein 1##AK023265|CPEB1|64506|cytoplasmic polyadenylation element binding protein 1##AK301728|CPEB1|64506|cytoplasmic polyadenylation element binding protein 1##AF329403|CPEB1|64506|cytoplasmic polyadenylation element binding protein 1##NM_001079533|CPEB1|64506|cytoplasmic polyadenylation element binding protein 1##NM_001079534|CPEB1|64506|cytoplasmic polyadenylation element binding protein 1##NM_001079535|CPEB1|64506|cytoplasmic polyadenylation element binding protein 1##BC050629|CPEB1|64506|cytoplasmic polyadenylation element binding protein 1##NM_030594|CPEB1|64506|cytoplasmic polyadenylation element binding protein 1	0.139291	
chr17	48172568	48172693	reg1000390.p2	8.832	+	AK055119 NM_001199898	-530	+	TSC_hg19_v1_chr17_+_48133357 AB209658 BC150190 BC015344	-39184	+	AK293323 AK303384 NM_002204 NM_005501 TSC_hg19_v1_chr17_+_48133350	-39289	+	TSC_hg19_v1_chr17_+_48172739 NM_001199900 NM_002611 AK297089 BC040478 BC063137 AK290522 AK293600 BC005811 L42451 NM_001199899	180	+	TSC_hg19_v1_chr17_-_48207145 BC142728 BC136485 AY148482 NM_174920 AK291482 AK094209 AK225767 BC141822	34519	-	AJ401189 NM_032595 TSC_hg19_v1_chr17_-_48227977	55296	-	AK055119|PDK2|5164|pyruvate dehydrogenase kinase, isozyme 2##NM_001199898|PDK2|5164|pyruvate dehydrogenase kinase, isozyme 2##AB209658|ITGA3|3675|integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)##BC150190|ITGA3|3675|integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)##BC015344|ITGA3|3675|integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)##AK293323|ITGA3|3675|integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)##AK303384|ITGA3|3675|integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)##NM_002204|ITGA3|3675|integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)##NM_005501|ITGA3|3675|integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)##NM_001199900|PDK2|5164|pyruvate dehydrogenase kinase, isozyme 2##NM_002611|PDK2|5164|pyruvate dehydrogenase kinase, isozyme 2##AK297089|PDK2|5164|pyruvate dehydrogenase kinase, isozyme 2##BC040478|PDK2|5164|pyruvate dehydrogenase kinase, isozyme 2##BC063137|PDK2|5164|pyruvate dehydrogenase kinase, isozyme 2##AK290522|PDK2|5164|pyruvate dehydrogenase kinase, isozyme 2##AK293600|PDK2|5164|pyruvate dehydrogenase kinase, isozyme 2##BC005811|PDK2|5164|pyruvate dehydrogenase kinase, isozyme 2##L42451|PDK2|5164|pyruvate dehydrogenase kinase, isozyme 2##NM_001199899|PDK2|5164|pyruvate dehydrogenase kinase, isozyme 2##BC142728|SAMD14|201191|sterile alpha motif domain containing 14##BC136485|SAMD14|201191|sterile alpha motif domain containing 14##AY148482|SAMD14|201191|sterile alpha motif domain containing 14##NM_174920|SAMD14|201191|sterile alpha motif domain containing 14##AK291482|SAMD14|201191|sterile alpha motif domain containing 14##AK094209|SAMD14|201191|sterile alpha motif domain containing 14##AK225767|SAMD14|201191|sterile alpha motif domain containing 14##BC141822|SAMD14|201191|sterile alpha motif domain containing 14##AJ401189|PPP1R9B|84687|protein phosphatase 1, regulatory subunit 9B##NM_032595|PPP1R9B|84687|protein phosphatase 1, regulatory subunit 9B	0.553256	denovo_WM_21:40:0.489
chr11	66405987	66406115	reg1000344.p1	8.831	+	AB464693 TSC_hg19_v1_chr11_+_66395849	-10260	+	NM_001198836 NM_001198837 NM_001198845 NM_001198846 NM_006328 TSC_hg19_v1_chr11_+_66384100 AF315632 AF315633 EU287938 AK222830 AK297907 AK307254 AK021768 AK292805 AF080561 BC000488 BC023619 DQ294957 EU287939 EU446504	-21930	+	TSC_hg19_v1_chr11_+_66360672 AY113179 AF002210 NM_005125 BC105016 BC112055 CR541928	-45353	+	NM_001198843 NM_001198844 NM_002896 TSC_hg19_v1_chr11_+_66406176 AK303984 BC021120 AK225071 BC032735	82	+	BC000307 BC064960 TSC_hg19_v1_chr11_+_66406199 U89505	144	+	AK095158 BC004951 NM_031492 TSC_hg19_v1_chr11_-_66445302	39210	-	NM_001198836|RBM14|10432|RNA binding motif protein 14##NM_001198837|RBM14|10432|RNA binding motif protein 14##NM_001198845|RBM14-RBM4|100526737|RBM14-RBM4 readthrough##NM_001198846|RBM14-RBM4|100526737|RBM14-RBM4 readthrough##NM_006328|RBM14|10432|RNA binding motif protein 14##AF315632|RBM14|10432|RNA binding motif protein 14##AF315633|RBM14|10432|RNA binding motif protein 14##AK222830|RBM14|10432|RNA binding motif protein 14##AK021768|RBM14|10432|RNA binding motif protein 14##AF080561|RBM14|10432|RNA binding motif protein 14##BC000488|RBM14|10432|RNA binding motif protein 14##BC023619|RBM14|10432|RNA binding motif protein 14##DQ294957|RBM14|10432|RNA binding motif protein 14##EU446504|RBM14|10432|RNA binding motif protein 14##AY113179|CCS|9973|copper chaperone for superoxide dismutase##AF002210|CCS|9973|copper chaperone for superoxide dismutase##NM_005125|CCS|9973|copper chaperone for superoxide dismutase##BC105016|CCS|9973|copper chaperone for superoxide dismutase##BC112055|CCS|9973|copper chaperone for superoxide dismutase##CR541928|CCS|9973|copper chaperone for superoxide dismutase##NM_001198843|RBM4|5936|RNA binding motif protein 4##NM_001198844|RBM4|5936|RNA binding motif protein 4##NM_002896|RBM4|5936|RNA binding motif protein 4##AK303984|RBM4|5936|RNA binding motif protein 4##BC021120|RBM4|5936|RNA binding motif protein 4##AK225071|RBM4|5936|RNA binding motif protein 4##BC032735|RBM4|5936|RNA binding motif protein 4##BC000307|RBM4|5936|RNA binding motif protein 4##BC064960|RBM4|5936|RNA binding motif protein 4##U89505|RBM4|5936|RNA binding motif protein 4##AK095158|RBM4B|83759|RNA binding motif protein 4B##BC004951|RBM4B|83759|RNA binding motif protein 4B##NM_031492|RBM4B|83759|RNA binding motif protein 4B	1.761078	denovo_WM_21:2:0.913	denovo_WM_21:-81:0.837
chr3	49044654	49044808	reg1000392.p1	8.818	+	AK295145 NM_018031 TSC_hg19_v1_chr3_+_49044739	-115	+	BC060321 TSC_hg19_v1_chr3_+_49027877 CU680020 AK000269	-16871	+	TSC_hg19_v1_chr3_+_49027682 BC047566 NM_177938 NM_177939 AL713728 BC011710 AY198406 BC018731	-17230	+	TSC_hg19_v1_chr3_+_49044855 AK296387 AF099100 AK001080 AK092079 AX747346 AK297090 AK309913 AK225653 BC113467 BC143486 BC143488 BC101707 BC002826 AK304117	160	+	TSC_hg19_v1_chr3_-_49056011 BC054493 CU691092 BC014099 GQ129423 GQ129424 BC047683 BC032440 AK093054 AK301352 AX747889 AK001358 NM_001009996	11240	-	NM_199074	13176	+	AK295145|WDR6|11180|WD repeat domain 6##NM_018031|WDR6|11180|WD repeat domain 6##BC060321|P4HTM|54681|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)##AK000269|P4HTM|54681|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)##BC047566|P4HTM|54681|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)##NM_177938|P4HTM|54681|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)##NM_177939|P4HTM|54681|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)##AL713728|P4HTM|54681|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)##BC011710|P4HTM|54681|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)##AY198406|P4HTM|54681|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)##BC018731|P4HTM|54681|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)##AK296387|WDR6|11180|WD repeat domain 6##AF099100|WDR6|11180|WD repeat domain 6##AK001080|WDR6|11180|WD repeat domain 6##AK092079|WDR6|11180|WD repeat domain 6##AK297090|WDR6|11180|WD repeat domain 6##AK309913|WDR6|11180|WD repeat domain 6##AK225653|WDR6|11180|WD repeat domain 6##BC113467|WDR6|11180|WD repeat domain 6##BC143486|WDR6|11180|WD repeat domain 6##BC143488|WDR6|11180|WD repeat domain 6##BC101707|WDR6|11180|WD repeat domain 6##BC002826|WDR6|11180|WD repeat domain 6##AK304117|WDR6|11180|WD repeat domain 6##BC054493|DALRD3|55152|DALR anticodon binding domain containing 3##BC014099|DALRD3|55152|DALR anticodon binding domain containing 3##GQ129423|DALRD3|55152|DALR anticodon binding domain containing 3##GQ129424|DALRD3|55152|DALR anticodon binding domain containing 3##BC047683|DALRD3|55152|DALR anticodon binding domain containing 3##BC032440|DALRD3|55152|DALR anticodon binding domain containing 3##AK093054|DALRD3|55152|DALR anticodon binding domain containing 3##AK301352|DALRD3|55152|DALR anticodon binding domain containing 3##AK001358|DALRD3|55152|DALR anticodon binding domain containing 3##NM_001009996|DALRD3|55152|DALR anticodon binding domain containing 3##NM_199074|NDUFAF3|25915|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	0.130563	
chr19	45681709	45681839	reg1000278.p1	8.815	+	TSC_hg19_v1_chr19_-_45681496 FJ418644 BC001907 NM_024108 BC004450 AF161407	-296	-	NM_198478	-18367	-	TSC_hg19_v1_chr19_+_45596436 NM_019121	-85352	+	NM_212550 AK296695 TSC_hg19_v1_chr19_+_45682022	239	+	AK225791 AK093466 AX748143 NM_138568	55693	-	TSC_hg19_v1_chr19_+_45754522 NM_001199867 NM_031417 AB049127 AB088047	72753	+	FJ418644|TRAPPC6A|79090|trafficking protein particle complex 6A##BC001907|TRAPPC6A|79090|trafficking protein particle complex 6A##NM_024108|TRAPPC6A|79090|trafficking protein particle complex 6A##BC004450|TRAPPC6A|79090|trafficking protein particle complex 6A##AF161407|TRAPPC6A|79090|trafficking protein particle complex 6A##NM_198478|NKPD1|284353|NTPase, KAP family P-loop domain containing 1##NM_019121|PPP1R37|284352|protein phosphatase 1, regulatory subunit 37##NM_212550|BLOC1S3|388552|biogenesis of lysosomal organelles complex-1, subunit 3##AK296695|BLOC1S3|388552|biogenesis of lysosomal organelles complex-1, subunit 3##AK225791|EXOC3L2|90332|exocyst complex component 3-like 2##AK093466|EXOC3L2|90332|exocyst complex component 3-like 2##NM_138568|EXOC3L2|90332|exocyst complex component 3-like 2##NM_001199867|MARK4|57787|MAP/microtubule affinity-regulating kinase 4##NM_031417|MARK4|57787|MAP/microtubule affinity-regulating kinase 4##AB049127|MARK4|57787|MAP/microtubule affinity-regulating kinase 4##AB088047|MARK4|57787|MAP/microtubule affinity-regulating kinase 4	1.459207	denovo_WM_21:-21:0.933	denovo_WM_21:28:0.514
chr16	1359207	1359390	reg1000145.p2	8.807	+	NM_194260 NM_194261	-145	+	NM_012217 BC069143	-53022	+	NM_003294 BC074974 BC074975 BC029356	-68607	+	TSC_hg19_v1_chr16_+_1359631 NM_003345 NM_194259	330	+	AK291118 TSC_hg19_v1_chr16_+_1359639	344	+	TSC_hg19_v1_chr16_+_1359656 U45328 X96427 D45050	364	+	NM_194260|UBE2I|7329|ubiquitin-conjugating enzyme E2I##NM_194261|UBE2I|7329|ubiquitin-conjugating enzyme E2I##NM_012217|TPSD1|23430|tryptase delta 1##BC069143|TPSD1|23430|tryptase delta 1##NM_003294|TPSAB1|7177|tryptase alpha/beta 1##BC074974|TPSAB1|7177|tryptase alpha/beta 1##BC074975|TPSAB1|7177|tryptase alpha/beta 1##BC029356|TPSB2|64499|tryptase beta 2 (gene/pseudogene)##NM_003345|UBE2I|7329|ubiquitin-conjugating enzyme E2I##NM_194259|UBE2I|7329|ubiquitin-conjugating enzyme E2I##AK291118|UBE2I|7329|ubiquitin-conjugating enzyme E2I##U45328|UBE2I|7329|ubiquitin-conjugating enzyme E2I##X96427|UBE2I|7329|ubiquitin-conjugating enzyme E2I##D45050|UBE2I|7329|ubiquitin-conjugating enzyme E2I	0.0	
chr22	21996398	21996547	reg1000342.p1	8.806	+	TSC_hg19_v1_chr22_+_21987057 AK302030 AK093365 AX748079 BC033499 NM_152612	-9446	+	TSC_hg19_v1_chr22_-_21984367 BC133043 BC133047	-12072	-	TSC_hg19_v1_chr22_-_21984304 BC064568 BC053663 BC017281 BC110075 BC110799 BC057814 NM_001017964 BC096754	-12157	-	NM_022044 BC132849 BC132851 TSC_hg19_v1_chr22_+_21996560	81	+	TSC_hg19_v1_chr22_+_21996575 AY359118	102	+	TSC_hg19_v1_chr22_+_21996608 BC006248 AB043007	129	+	AK302030|CCDC116|164592|coiled-coil domain containing 116##AK093365|CCDC116|164592|coiled-coil domain containing 116##BC033499|CCDC116|164592|coiled-coil domain containing 116##NM_152612|CCDC116|164592|coiled-coil domain containing 116##BC133043|YDJC|150223|YdjC homolog (bacterial)##BC133047|YDJC|150223|YdjC homolog (bacterial)##BC064568|YDJC|150223|YdjC homolog (bacterial)##BC053663|YDJC|150223|YdjC homolog (bacterial)##BC017281|YDJC|150223|YdjC homolog (bacterial)##BC110075|YDJC|150223|YdjC homolog (bacterial)##BC110799|YDJC|150223|YdjC homolog (bacterial)##BC057814|YDJC|150223|YdjC homolog (bacterial)##NM_001017964|YDJC|150223|YdjC homolog (bacterial)##BC096754|YDJC|150223|YdjC homolog (bacterial)##NM_022044|SDF2L1|23753|stromal cell-derived factor 2-like 1##BC132849|SDF2L1|23753|stromal cell-derived factor 2-like 1##BC132851|SDF2L1|23753|stromal cell-derived factor 2-like 1##AY359118|SDF2L1|23753|stromal cell-derived factor 2-like 1##AB043007|SDF2L1|23753|stromal cell-derived factor 2-like 1	0.978936	denovo_WM_21:-59:0.885
chr22	37172384	37172546	reg1000092.p2	8.803	+	AL022729 TSC_hg19_v1_chr22_-_37172162 AK307105 AK307382 BC000566 AB209424 NM_001177701 NM_006860	-310	-	NM_001177702	-8392	-	AB528094 AF096322 CU012974 CU013262 CU686936 HQ258186 CR456414 BC112297 BC112299 BC069612 NM_006078	-73811	-	BC069300 NM_002854 BC096112 BC096113 BC096114 BC096115 X63070	43054	-	TSC_hg19_v1_chr22_+_37257047 BC002798 NM_000631 NM_013416 AK223324 AK290924 CR456528 AB025219 AB025220 AB463139 CU013128 CU013416 BT007346 CR542078	84643	+	TSC_hg19_v1_chr22_+_37309687 BC070085 NM_000395	137193	+	AL022729|IFT27|11020|intraflagellar transport 27 homolog (Chlamydomonas)##AK307105|IFT27|11020|intraflagellar transport 27 homolog (Chlamydomonas)##AK307382|IFT27|11020|intraflagellar transport 27 homolog (Chlamydomonas)##BC000566|IFT27|11020|intraflagellar transport 27 homolog (Chlamydomonas)##AB209424|IFT27|11020|intraflagellar transport 27 homolog (Chlamydomonas)##NM_001177701|IFT27|11020|intraflagellar transport 27 homolog (Chlamydomonas)##NM_006860|IFT27|11020|intraflagellar transport 27 homolog (Chlamydomonas)##NM_001177702|IFT27|11020|intraflagellar transport 27 homolog (Chlamydomonas)##AF096322|CACNG2|10369|calcium channel, voltage-dependent, gamma subunit 2##CU012974|CACNG2|10369|calcium channel, voltage-dependent, gamma subunit 2##CU013262|CACNG2|10369|calcium channel, voltage-dependent, gamma subunit 2##HQ258186|CACNG2|10369|calcium channel, voltage-dependent, gamma subunit 2##CR456414|CACNG2|10369|calcium channel, voltage-dependent, gamma subunit 2##BC112297|CACNG2|10369|calcium channel, voltage-dependent, gamma subunit 2##BC112299|CACNG2|10369|calcium channel, voltage-dependent, gamma subunit 2##BC069612|CACNG2|10369|calcium channel, voltage-dependent, gamma subunit 2##NM_006078|CACNG2|10369|calcium channel, voltage-dependent, gamma subunit 2##BC069300|PVALB|5816|parvalbumin##NM_002854|PVALB|5816|parvalbumin##BC096112|PVALB|5816|parvalbumin##BC096113|PVALB|5816|parvalbumin##BC096114|PVALB|5816|parvalbumin##BC096115|PVALB|5816|parvalbumin##X63070|PVALB|5816|parvalbumin##BC002798|NCF4|4689|neutrophil cytosolic factor 4, 40kDa##NM_000631|NCF4|4689|neutrophil cytosolic factor 4, 40kDa##NM_013416|NCF4|4689|neutrophil cytosolic factor 4, 40kDa##AK223324|NCF4|4689|neutrophil cytosolic factor 4, 40kDa##AK290924|NCF4|4689|neutrophil cytosolic factor 4, 40kDa##CR456528|NCF4|4689|neutrophil cytosolic factor 4, 40kDa##AB025219|NCF4|4689|neutrophil cytosolic factor 4, 40kDa##AB025220|NCF4|4689|neutrophil cytosolic factor 4, 40kDa##CU013128|NCF4|4689|neutrophil cytosolic factor 4, 40kDa##CU013416|NCF4|4689|neutrophil cytosolic factor 4, 40kDa##BT007346|NCF4|4689|neutrophil cytosolic factor 4, 40kDa##CR542078|NCF4|4689|neutrophil cytosolic factor 4, 40kDa##BC070085|CSF2RB|1439|colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)##NM_000395|CSF2RB|1439|colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	0.977657	denovo_WM_21:-19:0.978
chr16	50058965	50059101	reg1000443.p1	8.802	+	NM_015069	-198116	-	BC021181 BC021718 NM_144602 CU676858	-651205	+	M58583 TSC_hg19_v1_chr16_-_49315772 AK314276 NM_004352	-743299	-	TSC_hg19_v1_chr16_+_50059172 AK095420 AK301610 BC022550 CR933600 AK307309 BC036683 FJ516381 NM_153261	107	+	NM_182922 TSC_hg19_v1_chr16_+_50099906 AF462442 AK000725 BC014415	40860	+	TSC_hg19_v1_chr16_+_50099915 AK289949 BC018730 BC033077	40927	+	NM_015069|ZNF423|23090|zinc finger protein 423##BC021181|C16orf78|123970|chromosome 16 open reading frame 78##BC021718|C16orf78|123970|chromosome 16 open reading frame 78##NM_144602|C16orf78|123970|chromosome 16 open reading frame 78##M58583|CBLN1|869|cerebellin 1 precursor##AK314276|CBLN1|869|cerebellin 1 precursor##NM_004352|CBLN1|869|cerebellin 1 precursor##AK095420|TMEM188|255919|transmembrane protein 188##AK301610|TMEM188|255919|transmembrane protein 188##BC022550|TMEM188|255919|transmembrane protein 188##CR933600|TMEM188|255919|transmembrane protein 188##AK307309|TMEM188|255919|transmembrane protein 188##BC036683|TMEM188|255919|transmembrane protein 188##FJ516381|TMEM188|255919|transmembrane protein 188##NM_153261|TMEM188|255919|transmembrane protein 188##NM_182922|HEATR3|55027|HEAT repeat containing 3##AF462442|HEATR3|55027|HEAT repeat containing 3##AK000725|HEATR3|55027|HEAT repeat containing 3##BC014415|HEATR3|55027|HEAT repeat containing 3##AK289949|HEATR3|55027|HEAT repeat containing 3##BC018730|HEATR3|55027|HEAT repeat containing 3##BC033077|HEATR3|55027|HEAT repeat containing 3	1.63436	denovo_WM_21:3:0.830	denovo_WM_21:44:0.804
chr11	47789060	47789200	reg1000385.p1	8.801	+	EU832174 EU832267 TSC_hg19_v1_chr11_-_47788867 AK054636 BC037404 BC006557 NM_015308 AB023231	-178	-	CU691490 TSC_hg19_v1_chr11_-_47788838	-293	-	TSC_hg19_v1_chr11_-_47788834 AK123898 AL137480	-297	-	AB385295 D83781 TSC_hg19_v1_chr11_-_47869883 AK026236 BX647634 AK302396 AK304308 AL832029	80751	-	TSC_hg19_v1_chr11_-_47869903 BC125227 BC125228 BC009822 NM_015231	80848	-	TSC_hg19_v1_chr11_+_48002110 NM_001098503 NM_002843 U10886	212961	+	EU832174|FNBP4|23360|formin binding protein 4##EU832267|FNBP4|23360|formin binding protein 4##AK054636|FNBP4|23360|formin binding protein 4##BC037404|FNBP4|23360|formin binding protein 4##BC006557|FNBP4|23360|formin binding protein 4##NM_015308|FNBP4|23360|formin binding protein 4##AB023231|FNBP4|23360|formin binding protein 4##AK123898|FNBP4|23360|formin binding protein 4##AL137480|FNBP4|23360|formin binding protein 4##D83781|NUP160|23279|nucleoporin 160kDa##AK026236|NUP160|23279|nucleoporin 160kDa##BX647634|NUP160|23279|nucleoporin 160kDa##AK302396|NUP160|23279|nucleoporin 160kDa##AK304308|NUP160|23279|nucleoporin 160kDa##AL832029|NUP160|23279|nucleoporin 160kDa##BC125227|NUP160|23279|nucleoporin 160kDa##BC125228|NUP160|23279|nucleoporin 160kDa##BC009822|NUP160|23279|nucleoporin 160kDa##NM_015231|NUP160|23279|nucleoporin 160kDa##NM_001098503|PTPRJ|5795|protein tyrosine phosphatase, receptor type, J##NM_002843|PTPRJ|5795|protein tyrosine phosphatase, receptor type, J##U10886|PTPRJ|5795|protein tyrosine phosphatase, receptor type, J	0.829004	denovo_WM_21:-11:0.723
chr15	82798349	82798475	reg1000380.p1	8.793	+	NM_198181 CR936812	-76196	+	TSC_hg19_v1_chr15_+_82647308 BC066934	-151081	+	NM_001164465	-156707	-	BC009407 BC071928 M13932 AB055777 AK311951 BC070222 BC022370 NM_001021 NM_001199057 BC062715	26481	-	AK309746 AK310769 BC072390 TSC_hg19_v1_chr15_+_82944804 AK291684 AK309420 AK309732 AK307285	146380	+	BC007811 TSC_hg19_v1_chr15_+_82944831 BC065260 AK311124 AK311170 AK026448	146478	+	NM_198181|GOLGA6L9|440295|golgin A6 family-like 9##CR936812|GOLGA6L9|440295|golgin A6 family-like 9##BC066934|UBE2Q2P2|100134869|ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 2##NM_001164465|GOLGA6L10|647042|golgin A6 family-like 10##BC009407|RPS17|6218|ribosomal protein S17##BC071928|RPS17|6218|ribosomal protein S17##M13932|RPS17|6218|ribosomal protein S17##AK311951|RPS17|6218|ribosomal protein S17##BC070222|RPS17|6218|ribosomal protein S17##BC022370|RPS17|6218|ribosomal protein S17##NM_001021|RPS17|6218|ribosomal protein S17##NM_001199057|RPS17L|100505503|ribosomal protein S17-like##BC062715|RPS17|6218|ribosomal protein S17##AK309746|AGSK1|80154|golgin subfamily A member 2-like##AK310769|AGSK1|80154|golgin subfamily A member 2-like##BC072390|AGSK1|80154|golgin subfamily A member 2-like##AK291684|AGSK1|80154|golgin subfamily A member 2-like##AK309420|AGSK1|80154|golgin subfamily A member 2-like##AK309732|AGSK1|80154|golgin subfamily A member 2-like##AK307285|AGSK1|80154|golgin subfamily A member 2-like##BC007811|AGSK1|80154|golgin subfamily A member 2-like##BC065260|AGSK1|80154|golgin subfamily A member 2-like##AK311124|AGSK1|80154|golgin subfamily A member 2-like##AK311170|AGSK1|80154|golgin subfamily A member 2-like##AK026448|AGSK1|80154|golgin subfamily A member 2-like	0.139291	
chr15	90118554	90118674	reg1000291.p1	8.789	+	CU689056 AY257182 AF193809 NM_016321 BC015461 AK298252 AK298641 AF081497 AK301640 AK313238 BC030965 AK290899 AK310222	-78819	-	TSC_hg19_v1_chr15_-_89878042 AK291281	-240571	-	BC050559 BC042571 NM_001126131 NM_002693 X98093 TSC_hg19_v1_chr15_-_89878036	-240593	-	TSC_hg19_v1_chr15_+_90118742 GQ227787 NM_152259	164	+	TSC_hg19_v1_chr15_-_90198681 BC042063 NM_198525	80006	-	TSC_hg19_v1_chr15_-_90222599 AB005293 BC031084 AK310907 NM_001145311 NM_002666	103995	-	AY257182|RHCG|51458|Rh family, C glycoprotein##AF193809|RHCG|51458|Rh family, C glycoprotein##NM_016321|RHCG|51458|Rh family, C glycoprotein##BC015461|RHCG|51458|Rh family, C glycoprotein##AK298252|RHCG|51458|Rh family, C glycoprotein##AK298641|RHCG|51458|Rh family, C glycoprotein##AF081497|RHCG|51458|Rh family, C glycoprotein##AK301640|RHCG|51458|Rh family, C glycoprotein##AK313238|RHCG|51458|Rh family, C glycoprotein##BC030965|RHCG|51458|Rh family, C glycoprotein##AK290899|RHCG|51458|Rh family, C glycoprotein##AK310222|RHCG|51458|Rh family, C glycoprotein##AK291281|POLG|5428|polymerase (DNA directed), gamma##BC050559|POLG|5428|polymerase (DNA directed), gamma##BC042571|POLG|5428|polymerase (DNA directed), gamma##NM_001126131|POLG|5428|polymerase (DNA directed), gamma##NM_002693|POLG|5428|polymerase (DNA directed), gamma##X98093|POLG|5428|polymerase (DNA directed), gamma##GQ227787|C15orf42|90381|chromosome 15 open reading frame 42##NM_152259|C15orf42|90381|chromosome 15 open reading frame 42##BC042063|KIF7|374654|kinesin family member 7##NM_198525|KIF7|374654|kinesin family member 7##AB005293|PLIN1|5346|perilipin 1##BC031084|PLIN1|5346|perilipin 1##NM_001145311|PLIN1|5346|perilipin 1##NM_002666|PLIN1|5346|perilipin 1	0.990909	denovo_WM_21:28:0.970
chr14	73393059	73393179	reg1000407.p1	8.776	+	TSC_hg19_v1_chr14_-_73360810 AY803021 CU687430 EU446740 AK024141 AK294425 BC026305 BC060801 NM_012074	-32311	-	NM_001204416 NM_001204417 NM_001204418 NM_001204419 NM_001204420 NM_001204421 NM_001204422 NM_004296 AF073920 BC104877 BC113572 BC143699 AB209462	-993253	+	TSC_hg19_v1_chr14_+_72399149 AK294486 NM_001204424	-993966	+	AK315499 NM_001163508 NM_001163509 NM_015604 NM_181340 NM_181341 BX161489 AK297571 TSC_hg19_v1_chr14_+_73393208 BC035901 AK300786 AK027745 AK297742 BX247962 BC018979	16	+	AK098542 AF311602 NM_178441	60538	-	AB046809 TSC_hg19_v1_chr14_-_73493815 AJ310569 AK027399 BC014902 BC053520 NM_021260	100712	-	AY803021|DPF3|8110|D4, zinc and double PHD fingers, family 3##EU446740|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK024141|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK294425|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC026305|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC060801|DPF3|8110|D4, zinc and double PHD fingers, family 3##NM_012074|DPF3|8110|D4, zinc and double PHD fingers, family 3##NM_001204416|RGS6|9628|regulator of G-protein signaling 6##NM_001204417|RGS6|9628|regulator of G-protein signaling 6##NM_001204418|RGS6|9628|regulator of G-protein signaling 6##NM_001204419|RGS6|9628|regulator of G-protein signaling 6##NM_001204420|RGS6|9628|regulator of G-protein signaling 6##NM_001204421|RGS6|9628|regulator of G-protein signaling 6##NM_001204422|RGS6|9628|regulator of G-protein signaling 6##NM_004296|RGS6|9628|regulator of G-protein signaling 6##AF073920|RGS6|9628|regulator of G-protein signaling 6##BC104877|RGS6|9628|regulator of G-protein signaling 6##BC113572|RGS6|9628|regulator of G-protein signaling 6##BC143699|RGS6|9628|regulator of G-protein signaling 6##AB209462|RGS6|9628|regulator of G-protein signaling 6##AK294486|RGS6|9628|regulator of G-protein signaling 6##NM_001204424|RGS6|9628|regulator of G-protein signaling 6##AK315499|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163508|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163509|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_015604|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181340|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181341|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX161489|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297571|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC035901|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK300786|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK027745|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297742|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX247962|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC018979|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK098542|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AF311602|ZFYVE1|53349|zinc finger, FYVE domain containing 1##NM_178441|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AB046809|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AJ310569|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AK027399|ZFYVE1|53349|zinc finger, FYVE domain containing 1##BC014902|ZFYVE1|53349|zinc finger, FYVE domain containing 1##BC053520|ZFYVE1|53349|zinc finger, FYVE domain containing 1##NM_021260|ZFYVE1|53349|zinc finger, FYVE domain containing 1	0.019925	
chr5	153825383	153825516	reg1000418.p2	8.766	+	TSC_hg19_v1_chr5_-_153825380 BC042059 AK095428	-82	-	TSC_hg19_v1_chr5_+_153570292 BC050333 NM_198321 AK127135 AB078145 AB527381 AJ505950 AK074132	-255091	+	TSC_hg19_v1_chr5_+_153418558 AK315573 BC026244	-406889	+	TSC_hg19_v1_chr5_+_153825535 AK021588 NM_001131062 NM_001131063 NM_024632	70	+	TSC_hg19_v1_chr5_+_153825568 AY341060 BC009829	161	+	TSC_hg19_v1_chr5_-_153857790 BC021190	32339	-	BC042059|FLJ38109|386627|uncharacterized LOC386627##AK095428|FLJ38109|386627|uncharacterized LOC386627##BC050333|GALNT10|55568|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)##NM_198321|GALNT10|55568|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)##AK127135|GALNT10|55568|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)##AB078145|GALNT10|55568|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)##AJ505950|GALNT10|55568|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)##AK074132|GALNT10|55568|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)##AK315573|MFAP3|4238|microfibrillar-associated protein 3##BC026244|MFAP3|4238|microfibrillar-associated protein 3##AK021588|SAP30L|79685|SAP30-like##NM_001131062|SAP30L|79685|SAP30-like##NM_001131063|SAP30L|79685|SAP30-like##NM_024632|SAP30L|79685|SAP30-like##AY341060|SAP30L|79685|SAP30-like##BC009829|SAP30L|79685|SAP30-like##BC021190|HAND1|9421|heart and neural crest derivatives expressed 1	0.033874	
chr15	85777998	85778112	reg1000448.p1	8.753	+	AL109778 TSC_hg19_v1_chr15_+_85666316 AL109687	-111737	+	BC075822 TSC_hg19_v1_chr15_+_85525333	-252729	+	NM_002605 NM_173454 AF388183 AF388184 AF388185 AF388186 AF388187 AF332653 TSC_hg19_v1_chr15_+_85525261 BC036190	-252818	+	TSC_hg19_v1_chr15_+_85923835 AK125331 BC050312 NM_006738 NM_007200 AF406992	145836	+	AF127481 NM_144767	442212	+	TSC_hg19_v1_chr15_-_86338156 AL136796 BC028100 AK056663 AK315541 AK092231 AX747419 AY764034	560042	-	AL109778|PDE8A|5151|phosphodiesterase 8A##AL109687|PDE8A|5151|phosphodiesterase 8A##BC075822|PDE8A|5151|phosphodiesterase 8A##NM_002605|PDE8A|5151|phosphodiesterase 8A##NM_173454|PDE8A|5151|phosphodiesterase 8A##AF388183|PDE8A|5151|phosphodiesterase 8A##AF388184|PDE8A|5151|phosphodiesterase 8A##AF388185|PDE8A|5151|phosphodiesterase 8A##AF388186|PDE8A|5151|phosphodiesterase 8A##AF388187|PDE8A|5151|phosphodiesterase 8A##AF332653|PDE8A|5151|phosphodiesterase 8A##BC036190|PDE8A|5151|phosphodiesterase 8A##AK125331|AKAP13|11214|A kinase (PRKA) anchor protein 13##BC050312|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_006738|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_007200|AKAP13|11214|A kinase (PRKA) anchor protein 13##AF406992|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_144767|AKAP13|11214|A kinase (PRKA) anchor protein 13##AL136796|KLHL25|64410|kelch-like 25 (Drosophila)##BC028100|KLHL25|64410|kelch-like 25 (Drosophila)##AK056663|KLHL25|64410|kelch-like 25 (Drosophila)##AK315541|KLHL25|64410|kelch-like 25 (Drosophila)##AK092231|KLHL25|64410|kelch-like 25 (Drosophila)##AY764034|KLHL25|64410|kelch-like 25 (Drosophila)	0.139291	
chr15	84898889	84899010	reg1000387.p1	8.741	+	NM_001243531	-57708	+	TSC_hg19_v1_chr15_+_84322810 AF237652 NM_207517 BC128389 BC128390 AK092324 AK308845 AX747482	-576122	+	TSC_hg19_v1_chr15_+_84116176 BC035598 AF036269 AF036270 AF036271 AF036272 CU692124 X99664	-782721	+	TSC_hg19_v1_chr15_+_85144280 AK128624 BC041620 NM_001007072 NM_017894 NM_181877 AK131309 AK291224 AK000602 AY262259 AY279349	245332	+	AK090406 TSC_hg19_v1_chr15_-_85197483 AK055578	298523	-	TSC_hg19_v1_chr15_-_85197503 AF161382 AK295372 BC014115 AK027794 AK055729 AK225199	298557	-	NM_001243531|LOC100505679|100505679|uncharacterized LOC100505679##AF237652|ADAMTSL3|57188|ADAMTS-like 3##NM_207517|ADAMTSL3|57188|ADAMTS-like 3##BC128389|ADAMTSL3|57188|ADAMTS-like 3##BC128390|ADAMTSL3|57188|ADAMTS-like 3##AK092324|ADAMTSL3|57188|ADAMTS-like 3##AK308845|ADAMTSL3|57188|ADAMTS-like 3##BC035598|SH3GL3|6457|SH3-domain GRB2-like 3##AF036269|SH3GL3|6457|SH3-domain GRB2-like 3##AF036270|SH3GL3|6457|SH3-domain GRB2-like 3##AF036271|SH3GL3|6457|SH3-domain GRB2-like 3##AF036272|SH3GL3|6457|SH3-domain GRB2-like 3##X99664|SH3GL3|6457|SH3-domain GRB2-like 3##AK128624|ZSCAN2|54993|zinc finger and SCAN domain containing 2##BC041620|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_001007072|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_017894|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_181877|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK131309|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK291224|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK000602|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AY262259|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AY279349|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK090406|WDR73|84942|WD repeat domain 73##AK055578|WDR73|84942|WD repeat domain 73##AF161382|WDR73|84942|WD repeat domain 73##AK295372|WDR73|84942|WD repeat domain 73##BC014115|WDR73|84942|WD repeat domain 73##AK027794|WDR73|84942|WD repeat domain 73##AK055729|WDR73|84942|WD repeat domain 73##AK225199|WDR73|84942|WD repeat domain 73	0.139291	
chr1	38397493	38397638	reg1000548.p1	8.735	+	TSC_hg19_v1_chr1_-_38397424 AK022846	-130	-	TSC_hg19_v1_chr1_-_38325265 X78710 AK225923 AK298751 AK309584 AK314233 BC014454 NM_005955	-72307	-	AY517499 TSC_hg19_v1_chr1_+_38273967 BC107856 BC057819 AK127381 BC102041 BC127187 BC127188 BC141938	-123655	+	TSC_hg19_v1_chr1_-_38412689 AL833055 BC058932	15117	-	TSC_hg19_v1_chr1_-_38412717 BC062317 AK310824	15146	-	TSC_hg19_v1_chr1_-_38412723 M74161	15156	-	AK022846|INPP5B|3633|inositol polyphosphate-5-phosphatase, 75kDa##X78710|MTF1|4520|metal-regulatory transcription factor 1##AK225923|MTF1|4520|metal-regulatory transcription factor 1##AK298751|MTF1|4520|metal-regulatory transcription factor 1##AK309584|MTF1|4520|metal-regulatory transcription factor 1##AK314233|MTF1|4520|metal-regulatory transcription factor 1##BC014454|MTF1|4520|metal-regulatory transcription factor 1##NM_005955|MTF1|4520|metal-regulatory transcription factor 1##AY517499|C1orf122|127687|chromosome 1 open reading frame 122##BC107856|C1orf122|127687|chromosome 1 open reading frame 122##BC057819|C1orf122|127687|chromosome 1 open reading frame 122##AK127381|C1orf122|127687|chromosome 1 open reading frame 122##BC102041|C1orf122|127687|chromosome 1 open reading frame 122##BC127187|C1orf122|127687|chromosome 1 open reading frame 122##BC127188|C1orf122|127687|chromosome 1 open reading frame 122##AL833055|INPP5B|3633|inositol polyphosphate-5-phosphatase, 75kDa##BC058932|INPP5B|3633|inositol polyphosphate-5-phosphatase, 75kDa##BC062317|INPP5B|3633|inositol polyphosphate-5-phosphatase, 75kDa##AK310824|INPP5B|3633|inositol polyphosphate-5-phosphatase, 75kDa##M74161|INPP5B|3633|inositol polyphosphate-5-phosphatase, 75kDa	0.0	
chr3	127309571	127309755	reg1000378.p2	8.733	+	BC050711 NM_001136053 AF289568 TSC_hg19_v1_chr3_-_127309565 NM_001142646	-130	-	TSC_hg19_v1_chr3_-_127309338 BC017058	-319	-	AB037108 NM_016372	-10384	-	TSC_hg19_v1_chr3_+_127317252 AK128291 AK299934 AK309335 NM_004526 BC014272 BC007670	7577	+	AK304204 BC017258 TSC_hg19_v1_chr3_+_127317271	7608	+	TSC_hg19_v1_chr3_+_127317274 D21063 BC006165 BC007938 BC017490	7621	+	BC050711|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##NM_001136053|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##AF289568|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##NM_001142646|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##BC017058|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##AB037108|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##NM_016372|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##AK128291|MCM2|4171|minichromosome maintenance complex component 2##AK299934|MCM2|4171|minichromosome maintenance complex component 2##AK309335|MCM2|4171|minichromosome maintenance complex component 2##NM_004526|MCM2|4171|minichromosome maintenance complex component 2##BC014272|MCM2|4171|minichromosome maintenance complex component 2##BC007670|MCM2|4171|minichromosome maintenance complex component 2##AK304204|MCM2|4171|minichromosome maintenance complex component 2##BC017258|MCM2|4171|minichromosome maintenance complex component 2##D21063|MCM2|4171|minichromosome maintenance complex component 2##BC006165|MCM2|4171|minichromosome maintenance complex component 2##BC007938|MCM2|4171|minichromosome maintenance complex component 2##BC017490|MCM2|4171|minichromosome maintenance complex component 2	0.475102	denovo_WM_21:29:0.422
chr19	6110655	6110795	reg1000376.p1	8.731	+	TSC_hg19_v1_chr19_-_6110613 BC028579 AK303321 NM_000635 NM_134433	-113	-	TSC_hg19_v1_chr19_-_6110512 AK291196 BC071571 X76091	-202	-	AK299856 TSC_hg19_v1_chr19_-_5978306 NM_003624 NM_007320 NM_007322	-132441	-	AY009107 BC022027 AK093433 AX748123 AK302604 AJ577571 NM_030924 BC090046 AL136854	25028	+	TSC_hg19_v1_chr19_-_6199558 AK056073	88822	-	AB463904 TSC_hg19_v1_chr19_-_6279803	169078	-	BC028579|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##AK303321|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##NM_000635|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##NM_134433|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##AK291196|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##BC071571|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##X76091|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##AK299856|RANBP3|8498|RAN binding protein 3##NM_003624|RANBP3|8498|RAN binding protein 3##NM_007320|RANBP3|8498|RAN binding protein 3##NM_007322|RANBP3|8498|RAN binding protein 3##AY009107|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##BC022027|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AK093433|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AK302604|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AJ577571|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##NM_030924|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##BC090046|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AL136854|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2	0.294369	denovo_WM_21:59:0.271
chr19	21203324	21203448	reg1000316.p1	8.699	+	NM_003429 BC068066 TSC_hg19_v1_chr19_+_21106090 U35376 M61866 BC008688	-97300	+	BC067843 TSC_hg19_v1_chr19_+_20959109	-244277	+	BC150651 AK096221 CR749233 TSC_hg19_v1_chr19_-_20844378 BC007116 BX648764 AK131567 BC107803 NM_001076675 NM_145297	-359024	-	AK290475 NM_001172671 NM_025189 TSC_hg19_v1_chr19_+_21203432 AK023721 AX721141 AY269787 BC111776	95	+	NM_182515 AL834415 TSC_hg19_v1_chr19_+_21264973 AK056006 BC022527 BC037782 BC050468 BC064985	61617	+	BX647597 TSC_hg19_v1_chr19_+_21324836 AK308127 NM_133473 AK293072 AB075849 BC065374 BC040506	121470	+	NM_003429|ZNF85|7639|zinc finger protein 85##BC068066|ZNF85|7639|zinc finger protein 85##U35376|ZNF85|7639|zinc finger protein 85##M61866|ZNF85|7639|zinc finger protein 85##BC008688|ZNF85|7639|zinc finger protein 85##AK096221|ZNF626|199777|zinc finger protein 626##CR749233|ZNF626|199777|zinc finger protein 626##BC007116|ZNF626|199777|zinc finger protein 626##BX648764|ZNF626|199777|zinc finger protein 626##BC107803|ZNF626|199777|zinc finger protein 626##NM_001076675|ZNF626|199777|zinc finger protein 626##NM_145297|ZNF626|199777|zinc finger protein 626##AK290475|ZNF430|80264|zinc finger protein 430##NM_001172671|ZNF430|80264|zinc finger protein 430##NM_025189|ZNF430|80264|zinc finger protein 430##AK023721|ZNF430|80264|zinc finger protein 430##AY269787|ZNF430|80264|zinc finger protein 430##BC111776|ZNF430|80264|zinc finger protein 430##NM_182515|ZNF714|148206|zinc finger protein 714##AK056006|ZNF714|148206|zinc finger protein 714##BC022527|ZNF714|148206|zinc finger protein 714##BC037782|ZNF714|148206|zinc finger protein 714##BC050468|ZNF714|148206|zinc finger protein 714##BC064985|ZNF714|148206|zinc finger protein 714##BX647597|ZNF431|170959|zinc finger protein 431##AK308127|ZNF431|170959|zinc finger protein 431##NM_133473|ZNF431|170959|zinc finger protein 431##AK293072|ZNF431|170959|zinc finger protein 431##AB075849|ZNF431|170959|zinc finger protein 431##BC040506|ZNF431|170959|zinc finger protein 431	0.989623	denovo_WM_21:-5:0.979
chr17	61699402	61699563	reg1000242.p1	8.687	+	TSC_hg19_v1_chr17_+_61678277 BC007744 CU675789	-21123	+	TSC_hg19_v1_chr17_+_61678230 AK315375 NM_016360 AK094052 AX748431 BC005049	-21250	+	TSC_hg19_v1_chr17_+_61628000 DQ891233 DQ894417 AB590131	-71470	+	TSC_hg19_v1_chr17_+_61699772 AX775739 AX775741 AK315305	264	+	TSC_hg19_v1_chr17_+_61699785 AK225784	302	+	TSC_hg19_v1_chr17_+_61699786 BC090859 NM_002401 NM_203351 AL834303	316	+	BC007744|TACO1|51204|translational activator of mitochondrially encoded cytochrome c oxidase I##AK315375|TACO1|51204|translational activator of mitochondrially encoded cytochrome c oxidase I##NM_016360|TACO1|51204|translational activator of mitochondrially encoded cytochrome c oxidase I##AK094052|TACO1|51204|translational activator of mitochondrially encoded cytochrome c oxidase I##BC005049|TACO1|51204|translational activator of mitochondrially encoded cytochrome c oxidase I##DQ891233|DCAF7|10238|DDB1 and CUL4 associated factor 7##DQ894417|DCAF7|10238|DDB1 and CUL4 associated factor 7##AX775739|MAP3K3|4215|mitogen-activated protein kinase kinase kinase 3##AX775741|MAP3K3|4215|mitogen-activated protein kinase kinase kinase 3##AK315305|MAP3K3|4215|mitogen-activated protein kinase kinase kinase 3##AK225784|MAP3K3|4215|mitogen-activated protein kinase kinase kinase 3##BC090859|MAP3K3|4215|mitogen-activated protein kinase kinase kinase 3##NM_002401|MAP3K3|4215|mitogen-activated protein kinase kinase kinase 3##NM_203351|MAP3K3|4215|mitogen-activated protein kinase kinase kinase 3##AL834303|MAP3K3|4215|mitogen-activated protein kinase kinase kinase 3	0.18055	
chr10	120101804	120101939	reg1000473.p1	8.677	+	TSC_hg19_v1_chr10_-_120101833 AK023250 BC023577 AK026630 NM_001134672 NM_022063	-47	-	BC036393 TSC_hg19_v1_chr10_+_119806514 AJ535622 AK055184 BC112326 BC112326 AY226450 AY226451 AY226451 AJ344228 AJ344228 AJ535620 AJ535620 AJ535621	-295441	+	DQ013303 BC075073 BC075074 TSC_hg19_v1_chr10_-_119806407 AB023158 AY037299 NM_014904	-295827	-	AK313269 AK290461 NM_004248	253287	-	CU691560 TSC_hg19_v1_chr10_-_120514298	412416	-	TSC_hg19_v1_chr10_-_120514483 AJ544771 AK097728	412640	-	AK023250|FAM204A|63877|family with sequence similarity 204, member A##BC023577|FAM204A|63877|family with sequence similarity 204, member A##AK026630|FAM204A|63877|family with sequence similarity 204, member A##NM_001134672|FAM204A|63877|family with sequence similarity 204, member A##NM_022063|FAM204A|63877|family with sequence similarity 204, member A##BC036393|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535622|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AK055184|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226450|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535621|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##DQ013303|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075073|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075074|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AB023158|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AY037299|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##NM_014904|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AK313269|PRLHR|2834|prolactin releasing hormone receptor##AK290461|PRLHR|2834|prolactin releasing hormone receptor##NM_004248|PRLHR|2834|prolactin releasing hormone receptor##AJ544771|C10orf46|143384|chromosome 10 open reading frame 46##AK097728|C10orf46|143384|chromosome 10 open reading frame 46	1.221888	denovo_WM_21:-7:0.236	denovo_WM_21:-29:0.986
chr17	18163765	18163927	reg1000484.p1	8.665	+	TSC_hg19_v1_chr17_-_18162053 BC025300 NM_002018	-1781	-	AK295814 AK297836 TSC_hg19_v1_chr17_-_18162033 BC017030 AK295655	-1817	-	AK310400 TSC_hg19_v1_chr17_-_18162017 AB208864 U01184 DQ893621 DQ896850	-1903	-	TSC_hg19_v1_chr17_+_18163948 NM_001144900 NM_139162 AK056165 AK128310	59	+	AF467443 BC014973 NM_148886	577	+	TSC_hg19_v1_chr17_-_18177717 AF086042	13900	-	BC025300|FLII|2314|flightless I homolog (Drosophila)##NM_002018|FLII|2314|flightless I homolog (Drosophila)##AK295814|FLII|2314|flightless I homolog (Drosophila)##AK297836|FLII|2314|flightless I homolog (Drosophila)##BC017030|FLII|2314|flightless I homolog (Drosophila)##AK295655|FLII|2314|flightless I homolog (Drosophila)##AK310400|FLII|2314|flightless I homolog (Drosophila)##AB208864|FLII|2314|flightless I homolog (Drosophila)##U01184|FLII|2314|flightless I homolog (Drosophila)##DQ893621|FLII|2314|flightless I homolog (Drosophila)##DQ896850|FLII|2314|flightless I homolog (Drosophila)##NM_001144900|SMCR7|125170|Smith-Magenis syndrome chromosome region, candidate 7##NM_139162|SMCR7|125170|Smith-Magenis syndrome chromosome region, candidate 7##AK056165|SMCR7|125170|Smith-Magenis syndrome chromosome region, candidate 7##AK128310|SMCR7|125170|Smith-Magenis syndrome chromosome region, candidate 7##AF467443|SMCR7|125170|Smith-Magenis syndrome chromosome region, candidate 7##BC014973|SMCR7|125170|Smith-Magenis syndrome chromosome region, candidate 7##NM_148886|SMCR7|125170|Smith-Magenis syndrome chromosome region, candidate 7##AF086042|TOP3A|7156|topoisomerase (DNA) III alpha	0.929196	denovo_WM_21:-14:0.635	denovo_WM_21:39:0.294
chr4	6271423	6271539	reg1000369.p2	8.643	+	TSC_hg19_v1_chr4_-_6202277 AK294356 AK307983 AK056126 AM412307 AM412308 AM412309 AM412310 BC026343 NM_001099433 NM_144720	-69197	-	DQ206871 TSC_hg19_v1_chr4_-_5894794 NM_001014809	-376737	-	BC009987 TSC_hg19_v1_chr4_-_5891940	-379553	-	TSC_hg19_v1_chr4_+_6271578 AF084481 NM_001145853 NM_006005	87	+	Y18064 TSC_hg19_v1_chr4_+_6271588	113	+	TSC_hg19_v1_chr4_+_6271608 AK295986 BC030130 AK312897	145	+	AK294356|JAKMIP1|152789|janus kinase and microtubule interacting protein 1##AK307983|JAKMIP1|152789|janus kinase and microtubule interacting protein 1##AK056126|JAKMIP1|152789|janus kinase and microtubule interacting protein 1##AM412307|JAKMIP1|152789|janus kinase and microtubule interacting protein 1##AM412308|JAKMIP1|152789|janus kinase and microtubule interacting protein 1##AM412309|JAKMIP1|152789|janus kinase and microtubule interacting protein 1##AM412310|JAKMIP1|152789|janus kinase and microtubule interacting protein 1##BC026343|JAKMIP1|152789|janus kinase and microtubule interacting protein 1##NM_001099433|JAKMIP1|152789|janus kinase and microtubule interacting protein 1##NM_144720|JAKMIP1|152789|janus kinase and microtubule interacting protein 1##DQ206871|CRMP1|1400|collapsin response mediator protein 1##NM_001014809|CRMP1|1400|collapsin response mediator protein 1##BC009987|CRMP1|1400|collapsin response mediator protein 1##AF084481|WFS1|7466|Wolfram syndrome 1 (wolframin)##NM_001145853|WFS1|7466|Wolfram syndrome 1 (wolframin)##NM_006005|WFS1|7466|Wolfram syndrome 1 (wolframin)##Y18064|WFS1|7466|Wolfram syndrome 1 (wolframin)##AK295986|WFS1|7466|Wolfram syndrome 1 (wolframin)##BC030130|WFS1|7466|Wolfram syndrome 1 (wolframin)##AK312897|WFS1|7466|Wolfram syndrome 1 (wolframin)	0.071953	
chrY	1730565	1730701	reg1000201.p2	8.632	+	AK314922 NM_001171038 U11091 M83779 NM_001171039 BC001620	-46630	+	NM_004043 U11090	-66286	+	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	-70104	+	BC015030 NM_001171135	637946	-	BC019696 CU689342 DQ891613 DQ894805 AJ293620 AY358849 BC032340 AB018328 NM_001171136 NM_004729 NM_145177	638355	-	M16279 BC010109 NM_001122898 NM_002414 BC024310 X16996 BC002584 AK313617 BC003147 BC021620 AK309517 DQ891912 AB463475 CR450286 U82164	828679	+	AK314922|ASMT|438|acetylserotonin O-methyltransferase##NM_001171038|ASMT|438|acetylserotonin O-methyltransferase##U11091|ASMT|438|acetylserotonin O-methyltransferase##M83779|ASMT|438|acetylserotonin O-methyltransferase##NM_001171039|ASMT|438|acetylserotonin O-methyltransferase##BC001620|ASMT|438|acetylserotonin O-methyltransferase##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015030|ZBED1|9189|zinc finger, BED-type containing 1##NM_001171135|ZBED1|9189|zinc finger, BED-type containing 1##BC019696|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##DQ891613|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##DQ894805|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AJ293620|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AY358849|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##BC032340|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AB018328|ZBED1|9189|zinc finger, BED-type containing 1##NM_001171136|ZBED1|9189|zinc finger, BED-type containing 1##NM_004729|ZBED1|9189|zinc finger, BED-type containing 1##NM_145177|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##M16279|CD99|4267|CD99 molecule##BC010109|CD99|4267|CD99 molecule##NM_001122898|CD99|4267|CD99 molecule##NM_002414|CD99|4267|CD99 molecule##BC024310|CD99|4267|CD99 molecule##X16996|CD99|4267|CD99 molecule##BC002584|CD99|4267|CD99 molecule##AK313617|CD99|4267|CD99 molecule##BC003147|CD99|4267|CD99 molecule##BC021620|CD99|4267|CD99 molecule##DQ891912|CD99|4267|CD99 molecule##CR450286|CD99|4267|CD99 molecule##U82164|CD99|4267|CD99 molecule	0.780603	denovo_WM_21:8:0.781
chr19	7694597	7694716	reg1000261.p2	8.631	+	TSC_hg19_v1_chr19_-_7694445 AF272147	-211	-	TSC_hg19_v1_chr19_-_7694428 CU675557 DQ893187 DQ896508 BC007208 AB026111 AF258567 AF226051 NM_020196	-253	-	CR749864 TSC_hg19_v1_chr19_-_7692280	-2414	-	TSC_hg19_v1_chr19_+_7694678 NM_001171155 BC150496 AK124717	20	+	BC038715 NM_174895 AK130855 BC025387	3945	-	AK055767 TSC_hg19_v1_chr19_-_7701853	7197	-	AF272147|XAB2|56949|XPA binding protein 2##DQ893187|XAB2|56949|XPA binding protein 2##DQ896508|XAB2|56949|XPA binding protein 2##BC007208|XAB2|56949|XPA binding protein 2##AB026111|XAB2|56949|XPA binding protein 2##AF258567|XAB2|56949|XPA binding protein 2##AF226051|XAB2|56949|XPA binding protein 2##NM_020196|XAB2|56949|XPA binding protein 2##CR749864|XAB2|56949|XPA binding protein 2##NM_001171155|C19orf79|100131801|chromosome 19 open reading frame 79##BC150496|C19orf79|100131801|chromosome 19 open reading frame 79##AK124717|C19orf79|100131801|chromosome 19 open reading frame 79##BC038715|PCP2|126006|Purkinje cell protein 2##NM_174895|PCP2|126006|Purkinje cell protein 2##AK130855|PCP2|126006|Purkinje cell protein 2##BC025387|PCP2|126006|Purkinje cell protein 2	0.53158	denovo_WM_21:-35:0.532
chrX	1780565	1780701	reg1000200.p2	8.629	+	AK314922 NM_001171038 U11091 M83779 NM_001171039 BC001620	-46630	+	NM_004043 U11090	-66286	+	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	-70104	+	BC015030 NM_001171135	637946	-	BC019696 CU689342 DQ891613 DQ894805 AJ293620 AY358849 BC032340 AB018328 NM_001171136 NM_004729 NM_145177	638355	-	M16279 BC010109 NM_001122898 NM_002414 BC024310 X16996 BC002584 AK313617 BC003147 BC021620 AK309517 DQ891912 AB463475 CR450286 U82164	828679	+	AK314922|ASMT|438|acetylserotonin O-methyltransferase##NM_001171038|ASMT|438|acetylserotonin O-methyltransferase##U11091|ASMT|438|acetylserotonin O-methyltransferase##M83779|ASMT|438|acetylserotonin O-methyltransferase##NM_001171039|ASMT|438|acetylserotonin O-methyltransferase##BC001620|ASMT|438|acetylserotonin O-methyltransferase##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015030|ZBED1|9189|zinc finger, BED-type containing 1##NM_001171135|ZBED1|9189|zinc finger, BED-type containing 1##BC019696|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##DQ891613|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##DQ894805|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AJ293620|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AY358849|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##BC032340|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AB018328|ZBED1|9189|zinc finger, BED-type containing 1##NM_001171136|ZBED1|9189|zinc finger, BED-type containing 1##NM_004729|ZBED1|9189|zinc finger, BED-type containing 1##NM_145177|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##M16279|CD99|4267|CD99 molecule##BC010109|CD99|4267|CD99 molecule##NM_001122898|CD99|4267|CD99 molecule##NM_002414|CD99|4267|CD99 molecule##BC024310|CD99|4267|CD99 molecule##X16996|CD99|4267|CD99 molecule##BC002584|CD99|4267|CD99 molecule##AK313617|CD99|4267|CD99 molecule##BC003147|CD99|4267|CD99 molecule##BC021620|CD99|4267|CD99 molecule##DQ891912|CD99|4267|CD99 molecule##CR450286|CD99|4267|CD99 molecule##U82164|CD99|4267|CD99 molecule	0.780603	denovo_WM_21:8:0.781
chr5	159546508	159546639	reg1000117.p1	8.619	+	TSC_hg19_v1_chr5_-_159546405 AB067522 BC035076 BC105110 BC143437 NM_001130864 NM_052927	-114	-	AK222641 TSC_hg19_v1_chr5_+_159436161 AK222984 NM_003314 U46570	-110406	+	TSC_hg19_v1_chr5_+_159436145 AK315262	-110426	+	DQ132786 NM_001130958	67800	+	NM_001040442 AB528665	79507	+	NM_001445 X90908 U19869 CU692652	109926	+	AB067522|PWWP2A|114825|PWWP domain containing 2A##BC035076|PWWP2A|114825|PWWP domain containing 2A##BC105110|PWWP2A|114825|PWWP domain containing 2A##BC143437|PWWP2A|114825|PWWP domain containing 2A##NM_001130864|PWWP2A|114825|PWWP domain containing 2A##NM_052927|PWWP2A|114825|PWWP domain containing 2A##AK222641|TTC1|7265|tetratricopeptide repeat domain 1##AK222984|TTC1|7265|tetratricopeptide repeat domain 1##NM_003314|TTC1|7265|tetratricopeptide repeat domain 1##U46570|TTC1|7265|tetratricopeptide repeat domain 1##AK315262|TTC1|7265|tetratricopeptide repeat domain 1##DQ132786|FABP6|2172|fatty acid binding protein 6, ileal##NM_001130958|FABP6|2172|fatty acid binding protein 6, ileal##NM_001040442|FABP6|2172|fatty acid binding protein 6, ileal##NM_001445|FABP6|2172|fatty acid binding protein 6, ileal##X90908|FABP6|2172|fatty acid binding protein 6, ileal##U19869|FABP6|2172|fatty acid binding protein 6, ileal	1.388679	denovo_WM_21:-35:0.217	denovo_WM_21:71:0.972
chr13	26795950	26796082	reg1000476.p1	8.609	+	BC034688 TSC_hg19_v1_chr13_-_26795942 AK293272 AJ010347 NM_183043	-39	-	TSC_hg19_v1_chr13_-_26795853 AY009109 NM_183044	-159	-	AL133621 TSC_hg19_v1_chr13_-_26789203	-6881	-	TSC_hg19_v1_chr13_-_26796406 AF293342 AJ010346 CR749238 AK312435 NM_005977	409	-	TSC_hg19_v1_chr13_+_26828240 BC094784	32225	+	BC069634 BC104492 BC105950 BC107601 NM_001260 X85753 AY702976 CU686950	32750	+	BC034688|RNF6|6049|ring finger protein (C3H2C3 type) 6##AK293272|RNF6|6049|ring finger protein (C3H2C3 type) 6##AJ010347|RNF6|6049|ring finger protein (C3H2C3 type) 6##NM_183043|RNF6|6049|ring finger protein (C3H2C3 type) 6##AY009109|RNF6|6049|ring finger protein (C3H2C3 type) 6##NM_183044|RNF6|6049|ring finger protein (C3H2C3 type) 6##AL133621|RNF6|6049|ring finger protein (C3H2C3 type) 6##AF293342|RNF6|6049|ring finger protein (C3H2C3 type) 6##AJ010346|RNF6|6049|ring finger protein (C3H2C3 type) 6##CR749238|RNF6|6049|ring finger protein (C3H2C3 type) 6##AK312435|RNF6|6049|ring finger protein (C3H2C3 type) 6##NM_005977|RNF6|6049|ring finger protein (C3H2C3 type) 6##BC094784|CDK8|1024|cyclin-dependent kinase 8##BC069634|CDK8|1024|cyclin-dependent kinase 8##BC104492|CDK8|1024|cyclin-dependent kinase 8##BC105950|CDK8|1024|cyclin-dependent kinase 8##BC107601|CDK8|1024|cyclin-dependent kinase 8##NM_001260|CDK8|1024|cyclin-dependent kinase 8##X85753|CDK8|1024|cyclin-dependent kinase 8##AY702976|CDK8|1024|cyclin-dependent kinase 8	1.628341	denovo_WM_21:-9:0.651	denovo_WM_21:30:0.977
chr16	30457178	30457321	reg1000528.p1	8.601	+	TSC_hg19_v1_chr16_-_30457197 AK093889 AX748354 NM_012248	-20	-	BC016643 BC002381 U43286 TSC_hg19_v1_chr16_-_30457196 AK092003 AK303275 AX747304	-67	-	CR457335 TSC_hg19_v1_chr16_-_30441339 AK024843 AF212242 AF210430 AY453409 BC001344 NM_024096	-15910	-	TSC_hg19_v1_chr16_+_30484003 NM_001114380 NM_002209 AX794822 AX794826 AK314246	26751	+	BC008777 AX794824 TSC_hg19_v1_chr16_+_30484062 AK298674 AX794810 Y00796 AK303190	26823	+	TSC_hg19_v1_chr16_+_30484116 AX794821 CU679099	26884	+	AK093889|SEPHS2|22928|selenophosphate synthetase 2##NM_012248|SEPHS2|22928|selenophosphate synthetase 2##BC016643|SEPHS2|22928|selenophosphate synthetase 2##BC002381|SEPHS2|22928|selenophosphate synthetase 2##U43286|SEPHS2|22928|selenophosphate synthetase 2##AK092003|SEPHS2|22928|selenophosphate synthetase 2##AK303275|SEPHS2|22928|selenophosphate synthetase 2##CR457335|DCTPP1|79077|dCTP pyrophosphatase 1##AK024843|DCTPP1|79077|dCTP pyrophosphatase 1##AF212242|DCTPP1|79077|dCTP pyrophosphatase 1##AF210430|DCTPP1|79077|dCTP pyrophosphatase 1##AY453409|DCTPP1|79077|dCTP pyrophosphatase 1##BC001344|DCTPP1|79077|dCTP pyrophosphatase 1##NM_024096|DCTPP1|79077|dCTP pyrophosphatase 1##NM_001114380|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##NM_002209|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK314246|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##BC008777|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK298674|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##Y00796|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK303190|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)	0.230435	denovo_WM_21:8:0.230
chr11	105893000	105893109	reg1000088.p1	8.599	+	TSC_hg19_v1_chr11_-_105892952 AL834523 BC041118 AB058729 NM_032424	-95	-	BC015199 NM_001112812 BC146816	-411624	+	NM_000829 NM_001077243 NM_001077244 TSC_hg19_v1_chr11_+_105480799 BC045546 BC142654 BC150209 BC035610	-412165	+	AF136978 AF151057 AF151838 AF302110 NM_015423 TSC_hg19_v1_chr11_+_105948388 BC016728 AK312529 BC015470 AK293362 AB463408 CU677695 DQ891342 DQ894524	55311	+	NM_152433 NM_198439	55410	-	BC085622 TSC_hg19_v1_chr11_-_106889260 BC130484 BC130488 BC144033 NM_000855 X63282 Z50053	996034	-	AL834523|KIAA1826|84437|KIAA1826##BC041118|KIAA1826|84437|KIAA1826##AB058729|KIAA1826|84437|KIAA1826##NM_032424|KIAA1826|84437|KIAA1826##BC015199|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##NM_001112812|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##BC146816|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##NM_000829|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##NM_001077243|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##NM_001077244|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##BC045546|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##BC142654|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##BC150209|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##BC035610|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##AF136978|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AF151057|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AF151838|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AF302110|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##NM_015423|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##BC016728|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AK312529|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##BC015470|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AK293362|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##DQ891342|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##DQ894524|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##NM_152433|KBTBD3|143879|kelch repeat and BTB (POZ) domain containing 3##NM_198439|KBTBD3|143879|kelch repeat and BTB (POZ) domain containing 3##BC130484|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##BC130488|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##BC144033|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##NM_000855|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##X63282|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##Z50053|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2	0.149022	
chr11	95523116	95523301	reg1000423.p1	8.596	+	AK021591 TSC_hg19_v1_chr11_-_95522975 BC026013 NM_144664	-242	-	TSC_hg19_v1_chr11_-_95522744 AK313727 BC028727	-475	-	CU693100 AM392906 DQ891214 DQ894397 TSC_hg19_v1_chr11_-_95522648 BX647586	-557	-	TSC_hg19_v1_chr11_+_95523702 NM_001243776 NM_001243777 NM_014679 BC001233 AK291245 AK293277 AK098647 BC031048 AY239292	467	+	D42054 BC039711 BC029385 AB385276 AY225092 CU691748 TSC_hg19_v1_chr11_+_95523869	632	+	AK293243 TSC_hg19_v1_chr11_-_95657092 AK302940 BC040432 AK291277	133843	-	AK021591|FAM76B|143684|family with sequence similarity 76, member B##BC026013|FAM76B|143684|family with sequence similarity 76, member B##NM_144664|FAM76B|143684|family with sequence similarity 76, member B##AK313727|FAM76B|143684|family with sequence similarity 76, member B##BC028727|FAM76B|143684|family with sequence similarity 76, member B##AM392906|FAM76B|143684|family with sequence similarity 76, member B##DQ891214|FAM76B|143684|family with sequence similarity 76, member B##DQ894397|FAM76B|143684|family with sequence similarity 76, member B##BX647586|FAM76B|143684|family with sequence similarity 76, member B##NM_001243776|CEP57|9702|centrosomal protein 57kDa##NM_001243777|CEP57|9702|centrosomal protein 57kDa##NM_014679|CEP57|9702|centrosomal protein 57kDa##BC001233|CEP57|9702|centrosomal protein 57kDa##AK291245|CEP57|9702|centrosomal protein 57kDa##AK293277|CEP57|9702|centrosomal protein 57kDa##AK098647|CEP57|9702|centrosomal protein 57kDa##BC031048|CEP57|9702|centrosomal protein 57kDa##AY239292|CEP57|9702|centrosomal protein 57kDa##D42054|CEP57|9702|centrosomal protein 57kDa##BC039711|CEP57|9702|centrosomal protein 57kDa##BC029385|CEP57|9702|centrosomal protein 57kDa##AY225092|CEP57|9702|centrosomal protein 57kDa##AK293243|MTMR2|8898|myotubularin related protein 2##AK302940|MTMR2|8898|myotubularin related protein 2##BC040432|MTMR2|8898|myotubularin related protein 2##AK291277|MTMR2|8898|myotubularin related protein 2	1.215612	denovo_WM_21:47:0.413	denovo_WM_21:87:0.802
chr12	123868564	123868681	reg1000313.p2	8.593	+	AK122703 TSC_hg19_v1_chr12_-_123849766	-18857	-	BC030544 TSC_hg19_v1_chr12_-_123849386 AK001695 AK307488	-19229	-	AY364255 AB014772 BC129949 BC133704 NM_001167856 NM_018183	-33637	-	TSC_hg19_v1_chr12_+_123868678 AK292645 NM_020382	33	+	TSC_hg19_v1_chr12_+_123868724 AY102937 AB464199	101	+	AY064546 TSC_hg19_v1_chr12_+_123873657	5007	+	AK122703|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##BC030544|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AK001695|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AK307488|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AY364255|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AB014772|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##BC129949|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##BC133704|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##NM_001167856|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##NM_018183|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AK292645|SETD8|387893|SET domain containing (lysine methyltransferase) 8##NM_020382|SETD8|387893|SET domain containing (lysine methyltransferase) 8##AY102937|SETD8|387893|SET domain containing (lysine methyltransferase) 8##AY064546|SETD8|387893|SET domain containing (lysine methyltransferase) 8	0.14817	
chr2	64067974	64068117	reg1000462.p1	8.586	+	TSC_hg19_v1_chr2_+_63816146 NM_001199111 NM_001199112 AK295931 AK300719	-251745	+	TSC_hg19_v1_chr2_+_63816101 AK312331 BC001484 D55654 AK307273	-251932	+	TSC_hg19_v1_chr2_-_63815908 NM_015910	-252198	-	TSC_hg19_v1_chr2_+_64068125 NM_001001521 BC002954 U27460	158	+	BX647825 NM_006759 AK314263 TSC_hg19_v1_chr2_+_64069029 BC047004 BC000173	981	+	BC030275 NM_001005739 NM_016516 TSC_hg19_v1_chr2_-_64246305	178217	-	NM_001199111|MDH1|4190|malate dehydrogenase 1, NAD (soluble)##NM_001199112|MDH1|4190|malate dehydrogenase 1, NAD (soluble)##AK295931|MDH1|4190|malate dehydrogenase 1, NAD (soluble)##AK300719|MDH1|4190|malate dehydrogenase 1, NAD (soluble)##AK312331|MDH1|4190|malate dehydrogenase 1, NAD (soluble)##BC001484|MDH1|4190|malate dehydrogenase 1, NAD (soluble)##D55654|MDH1|4190|malate dehydrogenase 1, NAD (soluble)##AK307273|MDH1|4190|malate dehydrogenase 1, NAD (soluble)##NM_015910|WDPCP|51057|WD repeat containing planar cell polarity effector##NM_001001521|UGP2|7360|UDP-glucose pyrophosphorylase 2##BC002954|UGP2|7360|UDP-glucose pyrophosphorylase 2##U27460|UGP2|7360|UDP-glucose pyrophosphorylase 2##BX647825|UGP2|7360|UDP-glucose pyrophosphorylase 2##NM_006759|UGP2|7360|UDP-glucose pyrophosphorylase 2##AK314263|UGP2|7360|UDP-glucose pyrophosphorylase 2##BC047004|UGP2|7360|UDP-glucose pyrophosphorylase 2##BC000173|UGP2|7360|UDP-glucose pyrophosphorylase 2##BC030275|VPS54|51542|vacuolar protein sorting 54 homolog (S. cerevisiae)##NM_001005739|VPS54|51542|vacuolar protein sorting 54 homolog (S. cerevisiae)##NM_016516|VPS54|51542|vacuolar protein sorting 54 homolog (S. cerevisiae)	0.13774	
chr19	23578294	23578432	reg1000377.p2	8.568	+	TSC_hg19_v1_chr19_-_23578274 AK300294 L11672 AK291256 NM_003430	-99	-	TSC_hg19_v1_chr19_-_23457022 AK023040	-121345	-	AK301230 TSC_hg19_v1_chr19_-_23433196	-145164	-	TSC_hg19_v1_chr19_-_23598839 AK022793	20481	-	TSC_hg19_v1_chr19_-_23598867 BC041431	20506	-	AY044432 AK307845 BC032394 AK093669 AX748253 NM_138330	291614	-	AK300294|ZNF91|7644|zinc finger protein 91##L11672|ZNF91|7644|zinc finger protein 91##AK291256|ZNF91|7644|zinc finger protein 91##NM_003430|ZNF91|7644|zinc finger protein 91##AK023040|LOC100132815|100132815|importin 5 pseudogene##AK301230|ZNF724P|440519|zinc finger protein 724, pseudogene##AY044432|ZNF675|171392|zinc finger protein 675##AK307845|ZNF675|171392|zinc finger protein 675##AK093669|ZNF675|171392|zinc finger protein 675##NM_138330|ZNF675|171392|zinc finger protein 675	0.021783	
chr22	42342777	42342895	reg1000455.p1	8.552	+	EU035297 NM_001110215	-6614	-	AB590047 AF373846 AX772914 AX800072 BC105123 NM_052945 BC112030	-20037	-	NM_001207020	-32166	-	AB528101 CR457392 CU012957 CU013245 BC000705 AL160131 TSC_hg19_v1_chr22_-_42343157 BC007495 CR456399 NM_001002876 NM_024053 AK123479	287	-	TSC_hg19_v1_chr22_+_42372810 NM_019106 NM_145733 AK290037 AK299919 AL833942 BC111779 CR456572 AF285107 AF285108 AF285109	30072	+	AK128138 NM_152613 TSC_hg19_v1_chr22_+_42394808 AK129656 AK296138 BC022546 BC022549 BC038789 AK310980 CR456400 AB463345 CU012958 CU013246	51939	+	EU035297|CENPM|79019|centromere protein M##NM_001110215|CENPM|79019|centromere protein M##AF373846|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX772914|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX800072|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC105123|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##NM_052945|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC112030|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##NM_001207020|SHISA8|440829|shisa homolog 8 (Xenopus laevis)##CR457392|CENPM|79019|centromere protein M##BC000705|CENPM|79019|centromere protein M##AL160131|CENPM|79019|centromere protein M##BC007495|CENPM|79019|centromere protein M##CR456399|CENPM|79019|centromere protein M##NM_001002876|CENPM|79019|centromere protein M##NM_024053|CENPM|79019|centromere protein M##AK123479|CENPM|79019|centromere protein M##NM_019106|SEPT3|55964|septin 3##NM_145733|SEPT3|55964|septin 3##AK290037|SEPT3|55964|septin 3##AK299919|SEPT3|55964|septin 3##AL833942|SEPT3|55964|septin 3##BC111779|SEPT3|55964|septin 3##CR456572|SEPT3|55964|septin 3##AF285107|SEPT3|55964|septin 3##AF285108|SEPT3|55964|septin 3##AF285109|SEPT3|55964|septin 3##AK128138|WBP2NL|164684|WBP2 N-terminal like##NM_152613|WBP2NL|164684|WBP2 N-terminal like##AK129656|WBP2NL|164684|WBP2 N-terminal like##AK296138|WBP2NL|164684|WBP2 N-terminal like##BC022546|WBP2NL|164684|WBP2 N-terminal like##BC022549|WBP2NL|164684|WBP2 N-terminal like##CR456400|WBP2NL|164684|WBP2 N-terminal like	1.313092	denovo_WM_21:-37:0.746	denovo_WM_21:37:0.548
chr2	24270281	24270441	reg1000394.p1	8.539	+	AK025598 TSC_hg19_v1_chr2_-_24270262 BC035698 NM_001142319 NM_025203	-103	-	NM_001080473	-37409	+	TSC_hg19_v1_chr2_+_24163332 BC092484 AL832079 NM_181713 BC111997 BC093681 BC143298	-106990	+	NM_004116 NM_054033 BC050998 TSC_hg19_v1_chr2_+_24272612	2238	+	BC002614 TSC_hg19_v1_chr2_+_24272636 D38037 S69800 S69815 L37086 AF322070	2291	+	AB527769 AF401310 TSC_hg19_v1_chr2_-_24299197 AF147425 AF161523 AK000621 AK311118 AK311908	28810	-	AK025598|C2orf44|80304|chromosome 2 open reading frame 44##BC035698|C2orf44|80304|chromosome 2 open reading frame 44##NM_001142319|C2orf44|80304|chromosome 2 open reading frame 44##NM_025203|C2orf44|80304|chromosome 2 open reading frame 44##NM_001080473|MFSD2B|388931|major facilitator superfamily domain containing 2B##BC092484|UBXN2A|165324|UBX domain protein 2A##AL832079|UBXN2A|165324|UBX domain protein 2A##NM_181713|UBXN2A|165324|UBX domain protein 2A##BC111997|UBXN2A|165324|UBX domain protein 2A##BC093681|UBXN2A|165324|UBX domain protein 2A##BC143298|UBXN2A|165324|UBX domain protein 2A##NM_004116|FKBP1B|2281|FK506 binding protein 1B, 12.6 kDa##NM_054033|FKBP1B|2281|FK506 binding protein 1B, 12.6 kDa##BC050998|FKBP1B|2281|FK506 binding protein 1B, 12.6 kDa##BC002614|FKBP1B|2281|FK506 binding protein 1B, 12.6 kDa##D38037|FKBP1B|2281|FK506 binding protein 1B, 12.6 kDa##S69800|FKBP1B|2281|FK506 binding protein 1B, 12.6 kDa##S69815|FKBP1B|2281|FK506 binding protein 1B, 12.6 kDa##L37086|FKBP1B|2281|FK506 binding protein 1B, 12.6 kDa##AF322070|FKBP1B|2281|FK506 binding protein 1B, 12.6 kDa##AF401310|SF3B14|51639|splicing factor 3B, 14 kDa subunit##AF161523|SF3B14|51639|splicing factor 3B, 14 kDa subunit##AK000621|SF3B14|51639|splicing factor 3B, 14 kDa subunit##AK311118|SF3B14|51639|splicing factor 3B, 14 kDa subunit##AK311908|SF3B14|51639|splicing factor 3B, 14 kDa subunit	0.93596	denovo_WM_21:17:0.498	denovo_WM_21:65:0.353
chr3	15643054	15643218	reg1000395.p1	8.534	+	BC007440 TSC_hg19_v1_chr3_-_15643077 AJ131753 AK056977 AK299287 AK301546 AK302086 BC001627 AK301990 NM_012260	-40	-	DQ895558 EU176367 AF161397 TSC_hg19_v1_chr3_-_15643040	-132	-	BC126363 BC144004 BC074828 BC074829 TSC_hg19_v1_chr3_-_15563197 AY150334 AY150335 AY150336 AY150337 AY150338 AY150339 AJ225895 AF057036 NM_005677 NM_080539 AK289688	-79918	-	AK297033 TSC_hg19_v1_chr3_+_15643251 NM_000060 AK313252 AK294301 U03274 BC012099 CU680214	112	+	TSC_hg19_v1_chr3_+_15643452 AK301838	327	+	AY367056 NM_001195099 BC035170 BC048975	154941	-	BC007440|HACL1|26061|2-hydroxyacyl-CoA lyase 1##AJ131753|HACL1|26061|2-hydroxyacyl-CoA lyase 1##AK056977|HACL1|26061|2-hydroxyacyl-CoA lyase 1##AK301546|HACL1|26061|2-hydroxyacyl-CoA lyase 1##AK302086|HACL1|26061|2-hydroxyacyl-CoA lyase 1##BC001627|HACL1|26061|2-hydroxyacyl-CoA lyase 1##AK301990|HACL1|26061|2-hydroxyacyl-CoA lyase 1##NM_012260|HACL1|26061|2-hydroxyacyl-CoA lyase 1##DQ895558|HACL1|26061|2-hydroxyacyl-CoA lyase 1##EU176367|HACL1|26061|2-hydroxyacyl-CoA lyase 1##AF161397|HACL1|26061|2-hydroxyacyl-CoA lyase 1##BC126363|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase##BC144004|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase##BC074828|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase##BC074829|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase##AY150334|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase##AY150335|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase##AY150336|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase##AY150337|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase##AY150338|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase##AY150339|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase##AJ225895|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase##AF057036|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase##NM_005677|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase##NM_080539|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase##AK289688|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase##AK297033|BTD|686|biotinidase##NM_000060|BTD|686|biotinidase##AK313252|BTD|686|biotinidase##AK294301|BTD|686|biotinidase##U03274|BTD|686|biotinidase##BC012099|BTD|686|biotinidase##AK301838|BTD|686|biotinidase##AY367056|ANKRD28|23243|ankyrin repeat domain 28##NM_001195099|ANKRD28|23243|ankyrin repeat domain 28##BC035170|ANKRD28|23243|ankyrin repeat domain 28##BC048975|ANKRD28|23243|ankyrin repeat domain 28	0.457646	denovo_WM_21:48:0.458
chr3	179280609	179280715	reg1000321.p1	8.521	+	TSC_hg19_v1_chr3_-_179169361 AK001890 NM_021629	-111297	-	BC000873 TSC_hg19_v1_chr3_-_179169227 AK297174	-111418	-	BC040557 NM_033540 TSC_hg19_v1_chr3_+_179065522 BC020661 AB043589 AK000700 AK314306	-215148	+	TSC_hg19_v1_chr3_+_179280713 AB060168 NM_004301 NM_177989 NM_178042 AK098691 BC000949 AL136608 BC036371	47	+	TSC_hg19_v1_chr3_+_179280739 AF041474	79	+	AB061315 AK223212 TSC_hg19_v1_chr3_+_179280751 AK021756 AB015907 BC001391 AB590675 EU832285 EU832370 CR533529 CU674682	151	+	AK001890|GNB4|59345|guanine nucleotide binding protein (G protein), beta polypeptide 4##NM_021629|GNB4|59345|guanine nucleotide binding protein (G protein), beta polypeptide 4##BC000873|GNB4|59345|guanine nucleotide binding protein (G protein), beta polypeptide 4##AK297174|GNB4|59345|guanine nucleotide binding protein (G protein), beta polypeptide 4##BC040557|MFN1|55669|mitofusin 1##NM_033540|MFN1|55669|mitofusin 1##BC020661|MFN1|55669|mitofusin 1##AB043589|MFN1|55669|mitofusin 1##AK000700|MFN1|55669|mitofusin 1##AK314306|MFN1|55669|mitofusin 1##AB060168|ACTL6A|86|actin-like 6A##NM_004301|ACTL6A|86|actin-like 6A##NM_177989|ACTL6A|86|actin-like 6A##NM_178042|ACTL6A|86|actin-like 6A##AK098691|ACTL6A|86|actin-like 6A##BC000949|ACTL6A|86|actin-like 6A##AL136608|ACTL6A|86|actin-like 6A##BC036371|ACTL6A|86|actin-like 6A##AF041474|ACTL6A|86|actin-like 6A##AB061315|ACTL6A|86|actin-like 6A##AK223212|ACTL6A|86|actin-like 6A##AK021756|ACTL6A|86|actin-like 6A##AB015907|ACTL6A|86|actin-like 6A##BC001391|ACTL6A|86|actin-like 6A##EU832285|ACTL6A|86|actin-like 6A##EU832370|ACTL6A|86|actin-like 6A##CR533529|ACTL6A|86|actin-like 6A	2.351358	denovo_WM_21:0:0.993	denovo_WM_21:30:0.436	denovo_WM_21:-50:0.923
chr19	21579774	21579922	reg1000567.p1	8.515	+	BC034499 TSC_hg19_v1_chr19_+_21541801 AK027579 AK291002 AK291193	-38068	+	TSC_hg19_v1_chr19_-_21512183 AK128184 AK131527 NM_021269 AK095062 BX647526	-67655	-	BX647597 TSC_hg19_v1_chr19_+_21324836 AK308127 NM_133473 AK293072 AB075849 BC065374 BC040506	-254992	+	TSC_hg19_v1_chr19_+_21579931 NM_001076678 NM_145326 NM_175910 BX648842 AK092178 AK128494 AB209086 BC006408 BC022394 AX721142 EU446562	113	+	CR627135 TSC_hg19_v1_chr19_-_21646716	66857	-	TSC_hg19_v1_chr19_+_21688403 AK308708 NM_001001415 AF325191 AY269786	108577	+	BC034499|ZNF738|148203|zinc finger protein 738##AK027579|ZNF738|148203|zinc finger protein 738##AK291002|ZNF738|148203|zinc finger protein 738##AK291193|ZNF738|148203|zinc finger protein 738##AK128184|ZNF708|7562|zinc finger protein 708##AK131527|ZNF708|7562|zinc finger protein 708##NM_021269|ZNF708|7562|zinc finger protein 708##BX647526|ZNF708|7562|zinc finger protein 708##BX647597|ZNF431|170959|zinc finger protein 431##AK308127|ZNF431|170959|zinc finger protein 431##NM_133473|ZNF431|170959|zinc finger protein 431##AK293072|ZNF431|170959|zinc finger protein 431##AB075849|ZNF431|170959|zinc finger protein 431##BC040506|ZNF431|170959|zinc finger protein 431##NM_001076678|ZNF493|284443|zinc finger protein 493##NM_145326|ZNF493|284443|zinc finger protein 493##NM_175910|ZNF493|284443|zinc finger protein 493##BX648842|ZNF493|284443|zinc finger protein 493##AK092178|ZNF493|284443|zinc finger protein 493##AK128494|ZNF493|284443|zinc finger protein 493##AB209086|ZNF493|284443|zinc finger protein 493##BC006408|ZNF493|284443|zinc finger protein 493##BC022394|ZNF493|284443|zinc finger protein 493##EU446562|ZNF493|284443|zinc finger protein 493##AK308708|ZNF429|353088|zinc finger protein 429##NM_001001415|ZNF429|353088|zinc finger protein 429##AF325191|ZNF429|353088|zinc finger protein 429##AY269786|ZNF429|353088|zinc finger protein 429	0.152149	
chr12	51632945	51633072	reg1000461.p2	8.510	+	TSC_hg19_v1_chr12_+_51632658 AB385271 CU677910 AK125855	-336	+	TSC_hg19_v1_chr12_+_51632650 D31767 BC002334 BC007900 AK095963	-373	+	TSC_hg19_v1_chr12_+_51632609 AK303828 AK290119 AK293330 AY430097 BX647278	-409	+	BC120965 BC120966 BC008712 TSC_hg19_v1_chr12_-_51663988 NM_001033873 BC001400 AK001839 NM_001031628	31077	-	TSC_hg19_v1_chr12_-_51717901 CU690454 AF146531	84860	-	TSC_hg19_v1_chr12_-_51717911 AK093638 AB032698 AK000783 AK225911 NM_016293	84913	-	AK125855|DAZAP2|9802|DAZ associated protein 2##D31767|DAZAP2|9802|DAZ associated protein 2##BC002334|DAZAP2|9802|DAZ associated protein 2##BC007900|DAZAP2|9802|DAZ associated protein 2##AK095963|DAZAP2|9802|DAZ associated protein 2##AK303828|DAZAP2|9802|DAZ associated protein 2##AK290119|DAZAP2|9802|DAZ associated protein 2##AK293330|DAZAP2|9802|DAZ associated protein 2##AY430097|DAZAP2|9802|DAZ associated protein 2##BX647278|DAZAP2|9802|DAZ associated protein 2##BC120965|SMAGP|57228|small cell adhesion glycoprotein##BC120966|SMAGP|57228|small cell adhesion glycoprotein##BC008712|SMAGP|57228|small cell adhesion glycoprotein##NM_001033873|SMAGP|57228|small cell adhesion glycoprotein##BC001400|SMAGP|57228|small cell adhesion glycoprotein##AK001839|SMAGP|57228|small cell adhesion glycoprotein##NM_001031628|SMAGP|57228|small cell adhesion glycoprotein##AF146531|BIN2|51411|bridging integrator 2##AK093638|BIN2|51411|bridging integrator 2##AB032698|BIN2|51411|bridging integrator 2##AK000783|BIN2|51411|bridging integrator 2##AK225911|BIN2|51411|bridging integrator 2##NM_016293|BIN2|51411|bridging integrator 2	0.238841	denovo_WM_21:9:0.239
chr17	46125496	46125645	reg1000358.p2	8.510	+	TSC_hg19_v1_chr17_-_46115160 AB590254 DQ893053 DQ896301 AB047849 BC015924 AB037938 NM_016429	-10420	-	AF343090 TSC_hg19_v1_chr17_+_46048487 AF110322 AK225274 BC072435 AB062433 BC009957	-77076	+	TSC_hg19_v1_chr17_+_46048471 AF217982 AK023722	-77101	+	TSC_hg19_v1_chr17_+_46125712 NM_003204 BC010623 AK090459	129	+	AL833530 TSC_hg19_v1_chr17_+_46125724	154	+	TSC_hg19_v1_chr17_+_46125725 X77366	182	+	DQ893053|COPZ2|51226|coatomer protein complex, subunit zeta 2##DQ896301|COPZ2|51226|coatomer protein complex, subunit zeta 2##AB047849|COPZ2|51226|coatomer protein complex, subunit zeta 2##BC015924|COPZ2|51226|coatomer protein complex, subunit zeta 2##AB037938|COPZ2|51226|coatomer protein complex, subunit zeta 2##NM_016429|COPZ2|51226|coatomer protein complex, subunit zeta 2##AF343090|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##AF110322|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##AK225274|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##BC072435|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##AB062433|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##BC009957|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##AF217982|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##AK023722|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##NM_003204|NFE2L1|4779|nuclear factor (erythroid-derived 2)-like 1##BC010623|NFE2L1|4779|nuclear factor (erythroid-derived 2)-like 1##AK090459|NFE2L1|4779|nuclear factor (erythroid-derived 2)-like 1##AL833530|NFE2L1|4779|nuclear factor (erythroid-derived 2)-like 1##X77366|NFE2L1|4779|nuclear factor (erythroid-derived 2)-like 1	0.460879	denovo_WM_21:35:0.330
chr3	50605180	50605281	reg1000400.p1	8.509	+	AK124438 AK311093 TSC_hg19_v1_chr3_-_50605192 BC034766 AK313128 AK308074 AK309486 AL833938 AK130227 NM_001171740 NM_001171743 NM_016210	-87	-	AJ251367 AJ251368 AB011130 BC152438 AB383908 NM_001005505 NM_001174051 NM_006030 AF040709 AF042792 AK310138 TSC_hg19_v1_chr3_-_50541066	-64270	-	TSC_hg19_v1_chr3_-_50396943 NM_007024 AK314166	-208292	-	TSC_hg19_v1_chr3_+_50606919 BX537562 NM_016173 AK314023 AF172244 AK124369	1718	+	AF188706 NM_001171741	3209	-	CU689192 AB528903 BC064354 TSC_hg19_v1_chr3_-_50649104	43862	-	AK124438|C3orf18|51161|chromosome 3 open reading frame 18##AK311093|C3orf18|51161|chromosome 3 open reading frame 18##BC034766|C3orf18|51161|chromosome 3 open reading frame 18##AK313128|C3orf18|51161|chromosome 3 open reading frame 18##AK308074|C3orf18|51161|chromosome 3 open reading frame 18##AK309486|C3orf18|51161|chromosome 3 open reading frame 18##AL833938|C3orf18|51161|chromosome 3 open reading frame 18##AK130227|C3orf18|51161|chromosome 3 open reading frame 18##NM_001171740|C3orf18|51161|chromosome 3 open reading frame 18##NM_001171743|C3orf18|51161|chromosome 3 open reading frame 18##NM_016210|C3orf18|51161|chromosome 3 open reading frame 18##AJ251367|CACNA2D2|9254|calcium channel, voltage-dependent, alpha 2/delta subunit 2##AJ251368|CACNA2D2|9254|calcium channel, voltage-dependent, alpha 2/delta subunit 2##AB011130|CACNA2D2|9254|calcium channel, voltage-dependent, alpha 2/delta subunit 2##BC152438|CACNA2D2|9254|calcium channel, voltage-dependent, alpha 2/delta subunit 2##NM_001005505|CACNA2D2|9254|calcium channel, voltage-dependent, alpha 2/delta subunit 2##NM_001174051|CACNA2D2|9254|calcium channel, voltage-dependent, alpha 2/delta subunit 2##NM_006030|CACNA2D2|9254|calcium channel, voltage-dependent, alpha 2/delta subunit 2##AF040709|CACNA2D2|9254|calcium channel, voltage-dependent, alpha 2/delta subunit 2##AF042792|CACNA2D2|9254|calcium channel, voltage-dependent, alpha 2/delta subunit 2##AK310138|CACNA2D2|9254|calcium channel, voltage-dependent, alpha 2/delta subunit 2##NM_007024|TMEM115|11070|transmembrane protein 115##AK314166|TMEM115|11070|transmembrane protein 115##BX537562|HEMK1|51409|HemK methyltransferase family member 1##NM_016173|HEMK1|51409|HemK methyltransferase family member 1##AK314023|HEMK1|51409|HemK methyltransferase family member 1##AF172244|HEMK1|51409|HemK methyltransferase family member 1##AK124369|HEMK1|51409|HemK methyltransferase family member 1##AF188706|C3orf18|51161|chromosome 3 open reading frame 18##NM_001171741|C3orf18|51161|chromosome 3 open reading frame 18##BC064354|CISH|1154|cytokine inducible SH2-containing protein	0.985534	denovo_WM_21:-12:0.986
chr14	75469456	75469612	reg1000411.p1	8.489	+	BX248289 NM_001207012 NM_002632	-47068	-	TSC_hg19_v1_chr14_-_75389964 BC036574 AK226137 AK054800	-79581	-	NM_031464	-80390	-	NM_014239 TSC_hg19_v1_chr14_+_75469623 BX161473 BC000494 BC003165 AF035280 BC011750 CU680040 DQ891364 DQ894544 L40395	127	+	AF195657 BC012544 TSC_hg19_v1_chr14_-_75518171 NM_001040108 NM_014381	48649	-	TSC_hg19_v1_chr14_-_75530719 BC035568 NM_001107 NM_203488 AK312101	61200	-	BX248289|PGF|5228|placental growth factor##NM_001207012|PGF|5228|placental growth factor##NM_002632|PGF|5228|placental growth factor##BC036574|RPS6KL1|83694|ribosomal protein S6 kinase-like 1##AK226137|RPS6KL1|83694|ribosomal protein S6 kinase-like 1##AK054800|RPS6KL1|83694|ribosomal protein S6 kinase-like 1##NM_031464|RPS6KL1|83694|ribosomal protein S6 kinase-like 1##NM_014239|EIF2B2|8892|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa##BX161473|EIF2B2|8892|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa##BC000494|EIF2B2|8892|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa##BC003165|EIF2B2|8892|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa##AF035280|EIF2B2|8892|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa##BC011750|EIF2B2|8892|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa##DQ891364|EIF2B2|8892|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa##DQ894544|EIF2B2|8892|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa##L40395|EIF2B2|8892|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa##AF195657|MLH3|27030|mutL homolog 3 (E. coli)##BC012544|MLH3|27030|mutL homolog 3 (E. coli)##NM_001040108|MLH3|27030|mutL homolog 3 (E. coli)##NM_014381|MLH3|27030|mutL homolog 3 (E. coli)##BC035568|ACYP1|97|acylphosphatase 1, erythrocyte (common) type##NM_001107|ACYP1|97|acylphosphatase 1, erythrocyte (common) type##NM_203488|ACYP1|97|acylphosphatase 1, erythrocyte (common) type##AK312101|ACYP1|97|acylphosphatase 1, erythrocyte (common) type	0.993855	denovo_WM_21:-26:0.994
chr11	9482275	9482454	reg1000268.p1	8.487	+	BC004388 TSC_hg19_v1_chr11_-_9482148 BC036621	-236	-	AK312885 TSC_hg19_v1_chr11_+_9406199 AF098799 BC114929	-76144	+	TSC_hg19_v1_chr11_+_9406165 NM_006391	-76212	+	NM_003442 BC020219 AK313330 TSC_hg19_v1_chr11_+_9482560 AK291133 AK297214 BC014458	179	+	TSC_hg19_v1_chr11_+_9595216 NM_003390 U10564 BC070052	112849	+	X62048 TSC_hg19_v1_chr11_+_9595313	112961	+	BC004388|LOC644656|644656|uncharacterized LOC644656##BC036621|LOC644656|644656|uncharacterized LOC644656##AK312885|IPO7|10527|importin 7##AF098799|IPO7|10527|importin 7##BC114929|IPO7|10527|importin 7##NM_006391|IPO7|10527|importin 7##NM_003442|ZNF143|7702|zinc finger protein 143##BC020219|ZNF143|7702|zinc finger protein 143##AK313330|ZNF143|7702|zinc finger protein 143##AK291133|ZNF143|7702|zinc finger protein 143##AK297214|ZNF143|7702|zinc finger protein 143##BC014458|ZNF143|7702|zinc finger protein 143##NM_003390|WEE1|7465|WEE1 homolog (S. pombe)##U10564|WEE1|7465|WEE1 homolog (S. pombe)##BC070052|WEE1|7465|WEE1 homolog (S. pombe)##X62048|WEE1|7465|WEE1 homolog (S. pombe)	0.760789	
chr13	111365462	111365607	reg1000527.p1	8.478	+	AK302353 AF149723 NM_198217	-509	+	TSC_hg19_v1_chr13_-_111358460 AK022180 NM_024537	-7067	-	TSC_hg19_v1_chr13_-_111358447 BC007220	-7086	-	NM_198218 AF181850 NM_198219	82	+	AB024401 AF149721 TSC_hg19_v1_chr13_+_111366061	521	+	AB024402 AF181849 NM_005537	1809	+	AK302353|ING1|3621|inhibitor of growth family, member 1##AF149723|ING1|3621|inhibitor of growth family, member 1##NM_198217|ING1|3621|inhibitor of growth family, member 1##AK022180|CARS2|79587|cysteinyl-tRNA synthetase 2, mitochondrial (putative)##NM_024537|CARS2|79587|cysteinyl-tRNA synthetase 2, mitochondrial (putative)##BC007220|CARS2|79587|cysteinyl-tRNA synthetase 2, mitochondrial (putative)##NM_198218|ING1|3621|inhibitor of growth family, member 1##AF181850|ING1|3621|inhibitor of growth family, member 1##NM_198219|ING1|3621|inhibitor of growth family, member 1##AB024401|ING1|3621|inhibitor of growth family, member 1##AF149721|ING1|3621|inhibitor of growth family, member 1##AB024402|ING1|3621|inhibitor of growth family, member 1##AF181849|ING1|3621|inhibitor of growth family, member 1##NM_005537|ING1|3621|inhibitor of growth family, member 1	0.0	
chr9	123476822	123476937	reg1000384.p1	8.456	+	TSC_hg19_v1_chr9_-_123476749 AY358370 AK295380 NM_001080497	-162	-	AB489151 BC136275 BC143732 BC143734 BC143753 BC143755 BC143760 BC143762 BC143764 TSC_hg19_v1_chr9_-_123342438 AF448860 AB046853 BC146782 BC019577 BX537421 AL833481 BX537759 AK122913 BX537708 NM_001011649 NM_018249	-134526	-	BC071702 BC065196 AF027734 BC021560 AK293649 TSC_hg19_v1_chr9_-_122131727 NM_014618	-1345221	-	AF176698 TSC_hg19_v1_chr9_-_123555558	78666	-	TSC_hg19_v1_chr9_-_123555628 BC110334 AF145024 AF193594	78742	-	BC000239 TSC_hg19_v1_chr9_-_123555670 BC018738 AK300066 AK314385 AK022484 NM_012164	78817	-	AY358370|MEGF9|1955|multiple EGF-like-domains 9##AK295380|MEGF9|1955|multiple EGF-like-domains 9##NM_001080497|MEGF9|1955|multiple EGF-like-domains 9##BC136275|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143732|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143734|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143753|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143755|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143760|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143762|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143764|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##AF448860|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##AB046853|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC146782|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC019577|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BX537421|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##AL833481|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BX537759|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##AK122913|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BX537708|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##NM_001011649|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##NM_018249|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC071702|DBC1|1620|deleted in bladder cancer 1##BC065196|DBC1|1620|deleted in bladder cancer 1##AF027734|DBC1|1620|deleted in bladder cancer 1##BC021560|DBC1|1620|deleted in bladder cancer 1##AK293649|DBC1|1620|deleted in bladder cancer 1##NM_014618|DBC1|1620|deleted in bladder cancer 1##AF176698|FBXW2|26190|F-box and WD repeat domain containing 2##BC110334|FBXW2|26190|F-box and WD repeat domain containing 2##AF145024|FBXW2|26190|F-box and WD repeat domain containing 2##AF193594|FBXW2|26190|F-box and WD repeat domain containing 2##BC000239|FBXW2|26190|F-box and WD repeat domain containing 2##BC018738|FBXW2|26190|F-box and WD repeat domain containing 2##AK300066|FBXW2|26190|F-box and WD repeat domain containing 2##AK314385|FBXW2|26190|F-box and WD repeat domain containing 2##AK022484|FBXW2|26190|F-box and WD repeat domain containing 2##NM_012164|FBXW2|26190|F-box and WD repeat domain containing 2	1.937174	denovo_WM_21:-30:0.949	denovo_WM_21:34:0.988
chr15	82944671	82944791	reg1000458.p2	8.399	+	BC009407 BC071928 M13932 AB055777 AK311951 BC070222 BC022370 NM_001021 NM_001199057 BC062715	-119838	-	NM_198181 CR936812	-222515	+	TSC_hg19_v1_chr15_+_82647308 BC066934	-297400	+	AK309746 AK310769 BC072390 TSC_hg19_v1_chr15_+_82944804 AK291684 AK309420 AK309732 AK307285	61	+	BC007811 TSC_hg19_v1_chr15_+_82944831 BC065260 AK311124 AK311170 AK026448	159	+	CR936602 NM_001164465	73447	-	BC009407|RPS17|6218|ribosomal protein S17##BC071928|RPS17|6218|ribosomal protein S17##M13932|RPS17|6218|ribosomal protein S17##AK311951|RPS17|6218|ribosomal protein S17##BC070222|RPS17|6218|ribosomal protein S17##BC022370|RPS17|6218|ribosomal protein S17##NM_001021|RPS17|6218|ribosomal protein S17##NM_001199057|RPS17L|100505503|ribosomal protein S17-like##BC062715|RPS17|6218|ribosomal protein S17##NM_198181|GOLGA6L9|440295|golgin A6 family-like 9##CR936812|GOLGA6L9|440295|golgin A6 family-like 9##BC066934|UBE2Q2P2|100134869|ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 2##AK309746|AGSK1|80154|golgin subfamily A member 2-like##AK310769|AGSK1|80154|golgin subfamily A member 2-like##BC072390|AGSK1|80154|golgin subfamily A member 2-like##AK291684|AGSK1|80154|golgin subfamily A member 2-like##AK309420|AGSK1|80154|golgin subfamily A member 2-like##AK309732|AGSK1|80154|golgin subfamily A member 2-like##AK307285|AGSK1|80154|golgin subfamily A member 2-like##BC007811|AGSK1|80154|golgin subfamily A member 2-like##BC065260|AGSK1|80154|golgin subfamily A member 2-like##AK311124|AGSK1|80154|golgin subfamily A member 2-like##AK311170|AGSK1|80154|golgin subfamily A member 2-like##AK026448|AGSK1|80154|golgin subfamily A member 2-like##CR936602|LOC643696|643696|uncharacterized LOC643696##NM_001164465|GOLGA6L10|647042|golgin A6 family-like 10	0.139291	
chr19	13049225	13049377	reg1000483.p1	8.398	+	AK130195 TSC_hg19_v1_chr19_-_13044530 NM_004461	-4752	-	TSC_hg19_v1_chr19_-_13044524 AK304587	-4776	-	TSC_hg19_v1_chr19_-_13044521 BC043565 AF042347 BT007198 CR456740 AB528515 CU675431 DQ890745 DQ893915 BC006495 D84471 U07424 AK092093	-4810	-	NM_004343 TSC_hg19_v1_chr19_+_13049422 AK295230 AK304492 M32294	118	+	TSC_hg19_v1_chr19_+_13049428 BC007911 BC020493	128	+	AY047586 TSC_hg19_v1_chr19_+_13049447 BC002500 AB385014 AB451408 BT007448 CR457070 AK223060	181	+	AK130195|FARSA|2193|phenylalanyl-tRNA synthetase, alpha subunit##NM_004461|FARSA|2193|phenylalanyl-tRNA synthetase, alpha subunit##AK304587|FARSA|2193|phenylalanyl-tRNA synthetase, alpha subunit##BC043565|FARSA|2193|phenylalanyl-tRNA synthetase, alpha subunit##AF042347|FARSA|2193|phenylalanyl-tRNA synthetase, alpha subunit##BT007198|FARSA|2193|phenylalanyl-tRNA synthetase, alpha subunit##CR456740|FARSA|2193|phenylalanyl-tRNA synthetase, alpha subunit##DQ890745|FARSA|2193|phenylalanyl-tRNA synthetase, alpha subunit##DQ893915|FARSA|2193|phenylalanyl-tRNA synthetase, alpha subunit##BC006495|FARSA|2193|phenylalanyl-tRNA synthetase, alpha subunit##D84471|FARSA|2193|phenylalanyl-tRNA synthetase, alpha subunit##U07424|FARSA|2193|phenylalanyl-tRNA synthetase, alpha subunit##AK092093|FARSA|2193|phenylalanyl-tRNA synthetase, alpha subunit##NM_004343|CALR|811|calreticulin##AK295230|CALR|811|calreticulin##AK304492|CALR|811|calreticulin##M32294|CALR|811|calreticulin##BC007911|CALR|811|calreticulin##BC020493|CALR|811|calreticulin##AY047586|CALR|811|calreticulin##BC002500|CALR|811|calreticulin##AB451408|CALR|811|calreticulin##BT007448|CALR|811|calreticulin##CR457070|CALR|811|calreticulin##AK223060|CALR|811|calreticulin	1.927268	denovo_WM_21:1:0.429	denovo_WM_21:31:0.734	denovo_WM_21:-68:0.710
chr2	62932470	62932604	reg1000219.p1	8.384	+	AK292545 NM_001142615	-31552	+	BC047439 AK091902 AX747245 NM_198276	-198998	-	TSC_hg19_v1_chr2_+_62423260 AB049584 BC047933 NM_006577 AF092051 AF288208	-509271	+	TSC_hg19_v1_chr2_+_62932868 AK310828 AK000828 NM_001142616 NM_015252 AL833968 BC067215	429	+	BC029477 NM_001142614	1493	+	NM_001199770	344654	+	AK292545|EHBP1|23301|EH domain binding protein 1##NM_001142615|EHBP1|23301|EH domain binding protein 1##BC047439|TMEM17|200728|transmembrane protein 17##AK091902|TMEM17|200728|transmembrane protein 17##NM_198276|TMEM17|200728|transmembrane protein 17##AB049584|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##BC047933|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##NM_006577|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AF092051|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AF288208|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AK310828|EHBP1|23301|EH domain binding protein 1##AK000828|EHBP1|23301|EH domain binding protein 1##NM_001142616|EHBP1|23301|EH domain binding protein 1##NM_015252|EHBP1|23301|EH domain binding protein 1##AL833968|EHBP1|23301|EH domain binding protein 1##BC067215|EHBP1|23301|EH domain binding protein 1##BC029477|EHBP1|23301|EH domain binding protein 1##NM_001142614|EHBP1|23301|EH domain binding protein 1##NM_001199770|OTX1|5013|orthodenticle homeobox 1	0.992806	denovo_WM_21:50:0.993
chr22	18484494	18484662	reg1000575.p1	8.381	+	TSC_hg19_v1_chr22_-_18484268 AK127487	-350	-	TSC_hg19_v1_chr22_-_18257284 BC002483 BC022072 NM_001196 NM_001244569 NM_001244570 NM_197967 EU678293 EU678294 NM_001244567	-227244	-	TSC_hg19_v1_chr22_-_18257223 BC009197 AF087891 AF042083	-227355	-	TSC_hg19_v1_chr22_-_18507301 AK295978 AK122725 NM_001122731 NM_001136004 NM_015241	22683	-	TSC_hg19_v1_chr22_+_18560749 AK000065 NM_001199319 NM_017929 AK000702	76110	+	TSC_hg19_v1_chr22_+_18560755 NM_001127649 BC016280 BC047320	76189	+	AK127487|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##BC022072|BID|637|BH3 interacting domain death agonist##NM_001196|BID|637|BH3 interacting domain death agonist##NM_001244569|BID|637|BH3 interacting domain death agonist##NM_001244570|BID|637|BH3 interacting domain death agonist##NM_197967|BID|637|BH3 interacting domain death agonist##EU678293|BID|637|BH3 interacting domain death agonist##EU678294|BID|637|BH3 interacting domain death agonist##NM_001244567|BID|637|BH3 interacting domain death agonist##BC009197|BID|637|BH3 interacting domain death agonist##AF087891|BID|637|BH3 interacting domain death agonist##AF042083|BID|637|BH3 interacting domain death agonist##AK295978|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_001122731|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_001136004|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_015241|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##AK000065|PEX26|55670|peroxisomal biogenesis factor 26##NM_001199319|PEX26|55670|peroxisomal biogenesis factor 26##NM_017929|PEX26|55670|peroxisomal biogenesis factor 26##AK000702|PEX26|55670|peroxisomal biogenesis factor 26##NM_001127649|PEX26|55670|peroxisomal biogenesis factor 26##BC016280|PEX26|55670|peroxisomal biogenesis factor 26##BC047320|PEX26|55670|peroxisomal biogenesis factor 26	0.512017	denovo_WM_21:-15:0.273	denovo_WM_21:31:0.239
chrX	47221629	47221759	reg1000492.p1	8.365	+	TSC_hg19_v1_chrX_+_47092422 AK055588 AK098394 BC073960 BC063668 AB073597 BC000350 AB385092 U44839 AK294635	-129229	+	BC140849 NM_004651 TSC_hg19_v1_chrX_+_47092361	-129382	+	AK301832 NM_001170460	-139278	+	U28687 NM_003446 BC075003 AB528013 EU446919	8329	+	BC015023 NM_007130 NM_153380	120650	-	NM_001654 X04790 TSC_hg19_v1_chrX_+_47420605 AB208831 AK300975 AK130043 AK297453 AK307747 BC002466 BC007514	198873	+	AK055588|USP11|8237|ubiquitin specific peptidase 11##AK098394|USP11|8237|ubiquitin specific peptidase 11##BC073960|USP11|8237|ubiquitin specific peptidase 11##BC063668|USP11|8237|ubiquitin specific peptidase 11##AB073597|USP11|8237|ubiquitin specific peptidase 11##BC000350|USP11|8237|ubiquitin specific peptidase 11##U44839|USP11|8237|ubiquitin specific peptidase 11##AK294635|USP11|8237|ubiquitin specific peptidase 11##BC140849|USP11|8237|ubiquitin specific peptidase 11##NM_004651|USP11|8237|ubiquitin specific peptidase 11##AK301832|CDK16|5127|cyclin-dependent kinase 16##NM_001170460|CDK16|5127|cyclin-dependent kinase 16##U28687|ZNF157|7712|zinc finger protein 157##NM_003446|ZNF157|7712|zinc finger protein 157##BC075003|ZNF157|7712|zinc finger protein 157##EU446919|ZNF157|7712|zinc finger protein 157##BC015023|ZNF41|7592|zinc finger protein 41##NM_007130|ZNF41|7592|zinc finger protein 41##NM_153380|ZNF41|7592|zinc finger protein 41##NM_001654|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##X04790|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AB208831|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK300975|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK130043|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK297453|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK307747|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##BC002466|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##BC007514|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog	0.982245	denovo_WM_21:-10:0.586	denovo_WM_21:-100:0.397
chr16	88729544	88729689	reg1000413.p1	8.358	+	BT006930 AB527587 DQ890562 DQ893724 TSC_hg19_v1_chr16_-_88729519 NM_002461 U49260 AB209229 BC000011	-99	-	AK097127 AK125578 AK300049 AK309030 TSC_hg19_v1_chr16_-_88717462 BT006861 DQ893235 DQ896565 AB590173 BC048338 BC033739 BC006465 BC011565 BC028224 M21186 NM_000101	-12167	-	AF152099 AY358471 BC069410 NM_013278 BC101835 BC112196 AF142410	-24613	+	TSC_hg19_v1_chr16_+_88729753 BX640980	135	+	TSC_hg19_v1_chr16_+_88729781 BC015583 BC050404	179	+	BC041461 AB464228 TSC_hg19_v1_chr16_-_88752874	23215	-	BT006930|MVD|4597|mevalonate (diphospho) decarboxylase##DQ890562|MVD|4597|mevalonate (diphospho) decarboxylase##DQ893724|MVD|4597|mevalonate (diphospho) decarboxylase##NM_002461|MVD|4597|mevalonate (diphospho) decarboxylase##U49260|MVD|4597|mevalonate (diphospho) decarboxylase##AB209229|MVD|4597|mevalonate (diphospho) decarboxylase##BC000011|MVD|4597|mevalonate (diphospho) decarboxylase##AK097127|CYBA|1535|cytochrome b-245, alpha polypeptide##AK300049|CYBA|1535|cytochrome b-245, alpha polypeptide##BT006861|CYBA|1535|cytochrome b-245, alpha polypeptide##DQ893235|CYBA|1535|cytochrome b-245, alpha polypeptide##DQ896565|CYBA|1535|cytochrome b-245, alpha polypeptide##BC033739|CYBA|1535|cytochrome b-245, alpha polypeptide##BC006465|CYBA|1535|cytochrome b-245, alpha polypeptide##BC011565|CYBA|1535|cytochrome b-245, alpha polypeptide##BC028224|CYBA|1535|cytochrome b-245, alpha polypeptide##M21186|CYBA|1535|cytochrome b-245, alpha polypeptide##NM_000101|CYBA|1535|cytochrome b-245, alpha polypeptide##AF152099|IL17C|27189|interleukin 17C##AY358471|IL17C|27189|interleukin 17C##BC069410|IL17C|27189|interleukin 17C##NM_013278|IL17C|27189|interleukin 17C##BC101835|IL17C|27189|interleukin 17C##BC112196|IL17C|27189|interleukin 17C##BX640980|MGC23284|197187|uncharacterized LOC197187##BC015583|MGC23284|197187|uncharacterized LOC197187##BC050404|MGC23284|197187|uncharacterized LOC197187##BC041461|SNAI3|333929|snail homolog 3 (Drosophila)	1.413225	denovo_WM_21:2:0.899	denovo_WM_21:41:0.514
chr1	20987993	20988137	reg1000447.p1	8.357	+	TSC_hg19_v1_chr1_-_20988023 NM_005216	-36	-	TSC_hg19_v1_chr1_-_20987997 D29643 AK315633	-63	-	TSC_hg19_v1_chr1_-_20987960 AK297009	-98	-	AB463089 BC065927 AB290162 NM_001122819 NM_020816	56194	-	AK296431 TSC_hg19_v1_chr1_-_21058714	70642	-	AK124869 NM_001103160 NM_001103161	71067	-	NM_005216|DDOST|1650|dolichyl-diphosphooligosaccharide--protein glycosyltransferase##D29643|DDOST|1650|dolichyl-diphosphooligosaccharide--protein glycosyltransferase##AK315633|DDOST|1650|dolichyl-diphosphooligosaccharide--protein glycosyltransferase##AK297009|DDOST|1650|dolichyl-diphosphooligosaccharide--protein glycosyltransferase##BC065927|KIF17|57576|kinesin family member 17##AB290162|KIF17|57576|kinesin family member 17##NM_001122819|KIF17|57576|kinesin family member 17##NM_020816|KIF17|57576|kinesin family member 17##AK296431|SH2D5|400745|SH2 domain containing 5##AK124869|SH2D5|400745|SH2 domain containing 5##NM_001103160|SH2D5|400745|SH2 domain containing 5##NM_001103161|SH2D5|400745|SH2 domain containing 5	0.71203	denovo_WM_21:64:0.712
chr17	44302743	44302856	reg1000518.p1	8.351	+	AK291259 NM_001193465	-72	-	TSC_hg19_v1_chr17_-_44270338 BC098376 NM_015443	-32490	-	TSC_hg19_v1_chr17_-_44270149 BX538006 NM_001193466	-32645	-	BC040501 CR749232 NM_014834	69697	+	BC020869 AK289590 AK315857 BC041803 BC030570 BX647266 NM_001039083 NM_001103154 NM_001113738 NM_016632	136323	-	BC040501 CR749232 NM_001006607	287276	+	AK291259|KIAA1267|284058|KIAA1267##NM_001193465|KIAA1267|284058|KIAA1267##BC098376|KIAA1267|284058|KIAA1267##NM_015443|KIAA1267|284058|KIAA1267##BX538006|KIAA1267|284058|KIAA1267##NM_001193466|KIAA1267|284058|KIAA1267##BC040501|LRRC37A|9884|leucine rich repeat containing 37A##CR749232|LRRC37A|9884|leucine rich repeat containing 37A##NM_014834|LRRC37A|9884|leucine rich repeat containing 37A##BC020869|ARL17A|51326|ADP-ribosylation factor-like 17A##AK289590|ARL17A|51326|ADP-ribosylation factor-like 17A##AK315857|ARL17A|51326|ADP-ribosylation factor-like 17A##BC041803|ARL17A|51326|ADP-ribosylation factor-like 17A##BC030570|ARL17A|51326|ADP-ribosylation factor-like 17A##BX647266|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_001039083|ARL17B|100506084|ADP-ribosylation factor-like 17B##NM_001103154|ARL17B|100506084|ADP-ribosylation factor-like 17B##NM_001113738|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_016632|ARL17A|51326|ADP-ribosylation factor-like 17A##BC040501|LRRC37A|9884|leucine rich repeat containing 37A##CR749232|LRRC37A|9884|leucine rich repeat containing 37A##NM_001006607|LRRC37A2|474170|leucine rich repeat containing 37, member A2	0.751275	denovo_WM_21:-29:0.751
chr7	100136500	100136677	reg1000322.p1	8.335	+	AK124773 NM_173564	-55039	+	BC001966 BC031622 AK314824 TSC_hg19_v1_chr7_-_100076802 BC002972 BC010406 AK296580 AK297702 AK310800 BC001486 NM_030935	-59761	-	BC031966 NM_001004323	-74695	-	TSC_hg19_v1_chr7_+_100136826 NM_006076 BC009393	223	+	TSC_hg19_v1_chr7_+_100136847 AK314954 BC017329 AB527774 CU675942	319	+	NM_001168682	34681	-	AK124773|NYAP1|222950|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1##NM_173564|NYAP1|222950|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1##BC001966|TSC22D4|81628|TSC22 domain family, member 4##BC031622|TSC22D4|81628|TSC22 domain family, member 4##AK314824|TSC22D4|81628|TSC22 domain family, member 4##BC002972|TSC22D4|81628|TSC22 domain family, member 4##BC010406|TSC22D4|81628|TSC22 domain family, member 4##AK296580|TSC22D4|81628|TSC22 domain family, member 4##AK297702|TSC22D4|81628|TSC22 domain family, member 4##BC001486|TSC22D4|81628|TSC22 domain family, member 4##NM_030935|TSC22D4|81628|TSC22 domain family, member 4##BC031966|C7orf61|402573|chromosome 7 open reading frame 61##NM_001004323|C7orf61|402573|chromosome 7 open reading frame 61##NM_006076|AGFG2|3268|ArfGAP with FG repeats 2##BC009393|AGFG2|3268|ArfGAP with FG repeats 2##AK314954|AGFG2|3268|ArfGAP with FG repeats 2##BC017329|AGFG2|3268|ArfGAP with FG repeats 2##NM_001168682|SAP25|100316904|Sin3A-associated protein, 25kDa	2.341528	denovo_WM_21:-3:0.439	denovo_WM_21:-44:0.960
chr13	20207691	20207822	reg1000453.p1	8.333	+	BC128146 BC128147 AJ421032 AY219890 NM_001141968 NM_130785 NM_199254	-96863	-	BC011721 NM_006001	-451794	-	None	None	None	TSC_hg19_v1_chr13_+_20207808 AK300258 NM_017520 BC017322 AK092556 AX747597 AL832864 BC003542	79	+	TSC_hg19_v1_chr13_-_20346399 AL834505	138684	-	CR457272 DQ892679 DQ895922 AB528394 AF448795 AF449627 TSC_hg19_v1_chr13_-_20357042	149159	-	BC128146|TPTE2|93492|transmembrane phosphoinositide 3-phosphatase and tensin homolog 2##BC128147|TPTE2|93492|transmembrane phosphoinositide 3-phosphatase and tensin homolog 2##AJ421032|TPTE2|93492|transmembrane phosphoinositide 3-phosphatase and tensin homolog 2##AY219890|TPTE2|93492|transmembrane phosphoinositide 3-phosphatase and tensin homolog 2##NM_001141968|TPTE2|93492|transmembrane phosphoinositide 3-phosphatase and tensin homolog 2##NM_130785|TPTE2|93492|transmembrane phosphoinositide 3-phosphatase and tensin homolog 2##NM_199254|TPTE2|93492|transmembrane phosphoinositide 3-phosphatase and tensin homolog 2##BC011721|TUBA3C|7278|tubulin, alpha 3c##NM_006001|TUBA3C|7278|tubulin, alpha 3c##AK300258|MPHOSPH8|54737|M-phase phosphoprotein 8##NM_017520|MPHOSPH8|54737|M-phase phosphoprotein 8##BC017322|MPHOSPH8|54737|M-phase phosphoprotein 8##AK092556|MPHOSPH8|54737|M-phase phosphoprotein 8##AL832864|MPHOSPH8|54737|M-phase phosphoprotein 8##BC003542|MPHOSPH8|54737|M-phase phosphoprotein 8##AL834505|PSPC1|55269|paraspeckle component 1##CR457272|PSPC1|55269|paraspeckle component 1##DQ892679|PSPC1|55269|paraspeckle component 1##DQ895922|PSPC1|55269|paraspeckle component 1##AF448795|PSPC1|55269|paraspeckle component 1##AF449627|PSPC1|55269|paraspeckle component 1	0.272401	
chr5	98109176	98109289	reg1000416.p1	8.330	+	BC067736 NM_001012761 AK074887 TSC_hg19_v1_chr5_+_98105085	-4191	+	TSC_hg19_v1_chr5_-_96518986 NM_001159749 NM_018343	-1590245	-	TSC_hg19_v1_chr5_-_96518945 AK002021	-1590290	-	BC054860 BC117134 NM_001270 AF006513	152996	-	TSC_hg19_v1_chr5_+_99871055 AY359108 AK289539 BC027332 NM_198507	1761841	+	AF529367 TSC_hg19_v1_chr5_+_99871306	1762038	+	BC067736|RGMB|285704|RGM domain family, member B##NM_001012761|RGMB|285704|RGM domain family, member B##AK074887|RGMB|285704|RGM domain family, member B##NM_001159749|RIOK2|55781|RIO kinase 2 (yeast)##NM_018343|RIOK2|55781|RIO kinase 2 (yeast)##AK002021|RIOK2|55781|RIO kinase 2 (yeast)##BC054860|CHD1|1105|chromodomain helicase DNA binding protein 1##BC117134|CHD1|1105|chromodomain helicase DNA binding protein 1##NM_001270|CHD1|1105|chromodomain helicase DNA binding protein 1##AF006513|CHD1|1105|chromodomain helicase DNA binding protein 1##AY359108|FAM174A|345757|family with sequence similarity 174, member A##AK289539|FAM174A|345757|family with sequence similarity 174, member A##BC027332|FAM174A|345757|family with sequence similarity 174, member A##NM_198507|FAM174A|345757|family with sequence similarity 174, member A##AF529367|FAM174A|345757|family with sequence similarity 174, member A	0.717148	denovo_WM_21:21:0.692
chr7	30066334	30066462	reg1000429.p2	8.307	+	CU675039 DQ892525 DQ895737 TSC_hg19_v1_chr7_-_30066286 AK000738 NM_017946 AK309552 AY358643 BC005206	-177	-	AK295172 NM_001145514	-36494	-	TSC_hg19_v1_chr7_-_30029417 AB071705 AK295713 D83777 AK293462 BC040492 NM_001145515 NM_014766 NM_001145513	-36890	-	TSC_hg19_v1_chr7_+_30068010 NM_001197026 NM_001197027 NM_032639 AK294857 BC053990 AK023180	1603	+	TSC_hg19_v1_chr7_+_30068250 BC002838 AF308300 AF380162 DQ893498 DQ896458 CU678236	1893	+	TSC_hg19_v1_chr7_+_30174621 NM_152793 AK096533 AL834391 AK098769 AB528783 AK294982	108184	+	DQ892525|FKBP14|55033|FK506 binding protein 14, 22 kDa##DQ895737|FKBP14|55033|FK506 binding protein 14, 22 kDa##AK000738|FKBP14|55033|FK506 binding protein 14, 22 kDa##NM_017946|FKBP14|55033|FK506 binding protein 14, 22 kDa##AK309552|FKBP14|55033|FK506 binding protein 14, 22 kDa##AY358643|FKBP14|55033|FK506 binding protein 14, 22 kDa##BC005206|FKBP14|55033|FK506 binding protein 14, 22 kDa##AK295172|SCRN1|9805|secernin 1##NM_001145514|SCRN1|9805|secernin 1##AB071705|SCRN1|9805|secernin 1##AK295713|SCRN1|9805|secernin 1##D83777|SCRN1|9805|secernin 1##AK293462|SCRN1|9805|secernin 1##BC040492|SCRN1|9805|secernin 1##NM_001145515|SCRN1|9805|secernin 1##NM_014766|SCRN1|9805|secernin 1##NM_001145513|SCRN1|9805|secernin 1##NM_001197026|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##NM_001197027|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##NM_032639|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AK294857|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##BC053990|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AK023180|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##BC002838|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AF308300|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AF380162|PLEKHA8P1|51054|pleckstrin homology domain containing, family A member 8 pseudogene 1##DQ893498|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##DQ896458|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##NM_152793|C7orf41|222166|chromosome 7 open reading frame 41##AK096533|C7orf41|222166|chromosome 7 open reading frame 41##AL834391|C7orf41|222166|chromosome 7 open reading frame 41##AK098769|C7orf41|222166|chromosome 7 open reading frame 41##AK294982|C7orf41|222166|chromosome 7 open reading frame 41	0.971809	denovo_WM_21:-20:0.972
chr10	104503472	104503628	reg1000428.p2	8.302	+	BC022091 NM_178858 TSC_hg19_v1_chr10_+_104474392 AF462052 AK055711 AK308246	-29205	+	TSC_hg19_v1_chr10_-_104474150 U07151 BC009841 AK312525 NM_004311	-29453	-	TSC_hg19_v1_chr10_+_104404226 NM_030912 BC021925 AF281046 AL360160 DQ892019 DQ895209 AF220034	-99266	+	TSC_hg19_v1_chr10_+_104503704 AK300871	120	+	TSC_hg19_v1_chr10_+_104503723 AK308843 AK316452	167	+	TSC_hg19_v1_chr10_+_104503724 NM_001083913	175	+	BC022091|SFXN2|118980|sideroflexin 2##NM_178858|SFXN2|118980|sideroflexin 2##AF462052|SFXN2|118980|sideroflexin 2##AK055711|SFXN2|118980|sideroflexin 2##AK308246|SFXN2|118980|sideroflexin 2##U07151|ARL3|403|ADP-ribosylation factor-like 3##BC009841|ARL3|403|ADP-ribosylation factor-like 3##AK312525|ARL3|403|ADP-ribosylation factor-like 3##NM_004311|ARL3|403|ADP-ribosylation factor-like 3##NM_030912|TRIM8|81603|tripartite motif containing 8##BC021925|TRIM8|81603|tripartite motif containing 8##AF281046|TRIM8|81603|tripartite motif containing 8##AL360160|TRIM8|81603|tripartite motif containing 8##DQ892019|TRIM8|81603|tripartite motif containing 8##DQ895209|TRIM8|81603|tripartite motif containing 8##AF220034|TRIM8|81603|tripartite motif containing 8##AK300871|C10orf26|54838|chromosome 10 open reading frame 26##AK308843|C10orf26|54838|chromosome 10 open reading frame 26##AK316452|C10orf26|54838|chromosome 10 open reading frame 26##NM_001083913|C10orf26|54838|chromosome 10 open reading frame 26	0.920629	denovo_WM_21:-23:0.921
chr19	1652918	1653036	reg1000352.p1	8.299	+	M31222 NM_003200 TSC_hg19_v1_chr19_-_1652346	-638	-	AB385055 BC110579 BC110580 M31523 NM_001136139	-2712	-	TSC_hg19_v1_chr19_-_1605464 NM_006830	-47504	-	NM_001080488 TSC_hg19_v1_chr19_+_1753823	100775	+	TSC_hg19_v1_chr19_+_1776120 AK074606	123210	+	AY302538 NM_001178002 TSC_hg19_v1_chr19_-_1812276 BC035162 NM_138813 AK125225 AK125969	159260	-	M31222|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_003200|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##BC110580|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##M31523|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_001136139|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_006830|UQCR11|10975|ubiquinol-cytochrome c reductase, complex III subunit XI##NM_001080488|ONECUT3|390874|one cut homeobox 3##AY302538|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##NM_001178002|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##BC035162|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##NM_138813|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##AK125225|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##AK125969|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3	0.0552	
chr14	103800444	103800548	reg1000341.p1	8.275	+	M92357 NM_006291 BC128449 BC128450 TSC_hg19_v1_chr14_+_103592873	-207728	+	TSC_hg19_v1_chr14_+_103589771 BC017818	-210751	+	BC113655 BC117375 NM_001077594 HQ258590	-233978	+	NM_001969 TSC_hg19_v1_chr14_+_103800527	14	+	TSC_hg19_v1_chr14_+_103800534 AL080102 AK026933	44	+	TSC_hg19_v1_chr14_+_103800573 BC107884	114	+	M92357|TNFAIP2|7127|tumor necrosis factor, alpha-induced protein 2##NM_006291|TNFAIP2|7127|tumor necrosis factor, alpha-induced protein 2##BC128449|TNFAIP2|7127|tumor necrosis factor, alpha-induced protein 2##BC128450|TNFAIP2|7127|tumor necrosis factor, alpha-induced protein 2##BC017818|TNFAIP2|7127|tumor necrosis factor, alpha-induced protein 2##BC113655|EXOC3L4|91828|exocyst complex component 3-like 4##BC117375|EXOC3L4|91828|exocyst complex component 3-like 4##NM_001077594|EXOC3L4|91828|exocyst complex component 3-like 4##HQ258590|EXOC3L4|91828|exocyst complex component 3-like 4##NM_001969|EIF5|1983|eukaryotic translation initiation factor 5##AL080102|EIF5|1983|eukaryotic translation initiation factor 5##AK026933|EIF5|1983|eukaryotic translation initiation factor 5##BC107884|EIF5|1983|eukaryotic translation initiation factor 5	1.234234	denovo_WM_21:4:0.837	denovo_WM_21:-27:0.397
chr17	73150631	73150754	reg1000364.p1	8.262	+	DQ891909 DQ895094 DQ896835 EU176653 CU674698 AF177862 BC001420 TSC_hg19_v1_chr17_-_73150608 AF266846 AK223321 AK312613	-140	-	TSC_hg19_v1_chr17_-_73127869 CU692564 BC002516 BC022334 BC008183 BC047763 BC017454 AF154829 AK000419 NM_001252377 NM_014595	-22835	-	TSC_hg19_v1_chr17_+_73106069 AK300997 AK310697 BC011728 NM_024585	-44638	+	AY322169 AY322170 NM_001002032 NM_001002033 NM_016185 AF086910	81	-	DQ893036 DQ896277 AB528658 L76416 TSC_hg19_v1_chr17_-_73179000 AK024823 BC107853 AK225090 BC062713 X99585 AK225263	28279	-	TSC_hg19_v1_chr17_-_73179055 BC071646 AK311837 BC022340 BC068465 BC008450	28356	-	DQ891909|HN1|51155|hematological and neurological expressed 1##DQ895094|HN1|51155|hematological and neurological expressed 1##DQ896835|HN1|51155|hematological and neurological expressed 1##EU176653|HN1|51155|hematological and neurological expressed 1##AF177862|HN1|51155|hematological and neurological expressed 1##BC001420|HN1|51155|hematological and neurological expressed 1##AF266846|HN1|51155|hematological and neurological expressed 1##AK223321|HN1|51155|hematological and neurological expressed 1##AK312613|HN1|51155|hematological and neurological expressed 1##BC002516|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC022334|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC008183|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC047763|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC017454|NT5C|30833|5', 3'-nucleotidase, cytosolic##AF154829|NT5C|30833|5', 3'-nucleotidase, cytosolic##AK000419|NT5C|30833|5', 3'-nucleotidase, cytosolic##NM_001252377|NT5C|30833|5', 3'-nucleotidase, cytosolic##NM_014595|NT5C|30833|5', 3'-nucleotidase, cytosolic##AK300997|ARMC7|79637|armadillo repeat containing 7##BC011728|ARMC7|79637|armadillo repeat containing 7##NM_024585|ARMC7|79637|armadillo repeat containing 7##AY322169|HN1|51155|hematological and neurological expressed 1##AY322170|HN1|51155|hematological and neurological expressed 1##NM_001002032|HN1|51155|hematological and neurological expressed 1##NM_001002033|HN1|51155|hematological and neurological expressed 1##NM_016185|HN1|51155|hematological and neurological expressed 1##AF086910|HN1|51155|hematological and neurological expressed 1##DQ893036|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##DQ896277|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##L76416|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##AK024823|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##BC107853|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##AK225090|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##BC062713|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##X99585|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##AK225263|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##BC071646|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##AK311837|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##BC022340|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##BC068465|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##BC008450|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)	0.965256	denovo_WM_21:12:0.965
chr15	82647183	82647304	reg1000490.p2	8.248	+	NM_001164465	-5538	-	TSC_hg19_v1_chr15_+_82555158 AL833762 NM_001008226 BC144647 AK304339	-92090	+	TSC_hg19_v1_chr15_-_82555076 NM_001040610 NM_024580	-92154	-	TSC_hg19_v1_chr15_+_82647308 BC066934	88	+	NM_198181 CR936812	74973	+	BC009407 BC071928 M13932 AB055777 AK311951 BC070222 BC022370 NM_001021 NM_001199057 BC062715	177650	-	NM_001164465|GOLGA6L10|647042|golgin A6 family-like 10##AL833762|FAM154B|283726|family with sequence similarity 154, member B##NM_001008226|FAM154B|283726|family with sequence similarity 154, member B##AK304339|FAM154B|283726|family with sequence similarity 154, member B##NM_001040610|EFTUD1|79631|elongation factor Tu GTP binding domain containing 1##NM_024580|EFTUD1|79631|elongation factor Tu GTP binding domain containing 1##BC066934|UBE2Q2P2|100134869|ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 2##NM_198181|GOLGA6L9|440295|golgin A6 family-like 9##CR936812|GOLGA6L9|440295|golgin A6 family-like 9##BC009407|RPS17|6218|ribosomal protein S17##BC071928|RPS17|6218|ribosomal protein S17##M13932|RPS17|6218|ribosomal protein S17##AK311951|RPS17|6218|ribosomal protein S17##BC070222|RPS17|6218|ribosomal protein S17##BC022370|RPS17|6218|ribosomal protein S17##NM_001021|RPS17|6218|ribosomal protein S17##NM_001199057|RPS17L|100505503|ribosomal protein S17-like##BC062715|RPS17|6218|ribosomal protein S17	0.139291	
chr14	54863526	54863674	reg1000491.p1	8.238	+	TSC_hg19_v1_chr14_-_54423561 BC020546 M22490 BX161438 NM_001202 NM_130850	-440067	-	NM_130851	-442331	-	TSC_hg19_v1_chr14_-_53620035 NM_001160147 NM_001160148 NM_030637	-1243550	-	AK098653 NM_001130851 NM_005192 TSC_hg19_v1_chr14_+_54863687 BC064965 L25876 L27711 BC103633 AK293265 EF560750 U02681	121	+	TSC_hg19_v1_chr14_-_54908095 BX248284 AY358635 AK074781 AK307074 AK311897 AF070654 AF104398 NM_005776 BC103741	44516	-	TSC_hg19_v1_chr14_-_54955693 M86492 AB209240 AK311753 BC005359	92085	-	BC020546|BMP4|652|bone morphogenetic protein 4##M22490|BMP4|652|bone morphogenetic protein 4##BX161438|BMP4|652|bone morphogenetic protein 4##NM_001202|BMP4|652|bone morphogenetic protein 4##NM_130850|BMP4|652|bone morphogenetic protein 4##NM_130851|BMP4|652|bone morphogenetic protein 4##NM_001160147|DDHD1|80821|DDHD domain containing 1##NM_001160148|DDHD1|80821|DDHD domain containing 1##NM_030637|DDHD1|80821|DDHD domain containing 1##AK098653|CDKN3|1033|cyclin-dependent kinase inhibitor 3##NM_001130851|CDKN3|1033|cyclin-dependent kinase inhibitor 3##NM_005192|CDKN3|1033|cyclin-dependent kinase inhibitor 3##BC064965|CDKN3|1033|cyclin-dependent kinase inhibitor 3##L25876|CDKN3|1033|cyclin-dependent kinase inhibitor 3##L27711|CDKN3|1033|cyclin-dependent kinase inhibitor 3##BC103633|CDKN3|1033|cyclin-dependent kinase inhibitor 3##AK293265|CDKN3|1033|cyclin-dependent kinase inhibitor 3##EF560750|CDKN3|1033|cyclin-dependent kinase inhibitor 3##U02681|CDKN3|1033|cyclin-dependent kinase inhibitor 3##BX248284|CNIH|10175|cornichon homolog (Drosophila)##AY358635|CNIH|10175|cornichon homolog (Drosophila)##AK074781|CNIH|10175|cornichon homolog (Drosophila)##AK307074|CNIH|10175|cornichon homolog (Drosophila)##AK311897|CNIH|10175|cornichon homolog (Drosophila)##AF070654|CNIH|10175|cornichon homolog (Drosophila)##AF104398|CNIH|10175|cornichon homolog (Drosophila)##NM_005776|CNIH|10175|cornichon homolog (Drosophila)##BC103741|CNIH|10175|cornichon homolog (Drosophila)##M86492|GMFB|2764|glia maturation factor, beta##AB209240|GMFB|2764|glia maturation factor, beta##AK311753|GMFB|2764|glia maturation factor, beta##BC005359|GMFB|2764|glia maturation factor, beta	1.758037	denovo_WM_21:43:0.892	denovo_WM_21:-78:0.831
chrX	47415547	47415693	reg1000425.p1	8.235	+	BC015023 NM_007130 NM_153380	-73276	-	U28687 NM_003446 BC075003 AB528013 EU446919	-185597	+	TSC_hg19_v1_chrX_+_47092422 AK055588 AK098394 BC073960 BC063668 AB073597 BC000350 AB385092 U44839 AK294635	-323155	+	NM_001654 X04790 TSC_hg19_v1_chrX_+_47420605 AB208831 AK300975 AK130043 AK297453 AK307747 BC002466 BC007514	4947	+	TSC_hg19_v1_chrX_+_47441773 NM_003254 AK074854 AK296116 BC000866 BC007097	26103	+	TSC_hg19_v1_chrX_+_47441834 X03124 M12670 AK310206 AK311937 AK307222 M59906 X02598	26203	+	BC015023|ZNF41|7592|zinc finger protein 41##NM_007130|ZNF41|7592|zinc finger protein 41##NM_153380|ZNF41|7592|zinc finger protein 41##U28687|ZNF157|7712|zinc finger protein 157##NM_003446|ZNF157|7712|zinc finger protein 157##BC075003|ZNF157|7712|zinc finger protein 157##EU446919|ZNF157|7712|zinc finger protein 157##AK055588|USP11|8237|ubiquitin specific peptidase 11##AK098394|USP11|8237|ubiquitin specific peptidase 11##BC073960|USP11|8237|ubiquitin specific peptidase 11##BC063668|USP11|8237|ubiquitin specific peptidase 11##AB073597|USP11|8237|ubiquitin specific peptidase 11##BC000350|USP11|8237|ubiquitin specific peptidase 11##U44839|USP11|8237|ubiquitin specific peptidase 11##AK294635|USP11|8237|ubiquitin specific peptidase 11##NM_001654|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##X04790|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AB208831|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK300975|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK130043|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK297453|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK307747|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##BC002466|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##BC007514|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##NM_003254|TIMP1|7076|TIMP metallopeptidase inhibitor 1##AK074854|TIMP1|7076|TIMP metallopeptidase inhibitor 1##AK296116|TIMP1|7076|TIMP metallopeptidase inhibitor 1##BC000866|TIMP1|7076|TIMP metallopeptidase inhibitor 1##BC007097|TIMP1|7076|TIMP metallopeptidase inhibitor 1##X03124|TIMP1|7076|TIMP metallopeptidase inhibitor 1##M12670|TIMP1|7076|TIMP metallopeptidase inhibitor 1##AK310206|TIMP1|7076|TIMP metallopeptidase inhibitor 1##AK311937|TIMP1|7076|TIMP metallopeptidase inhibitor 1##M59906|TIMP1|7076|TIMP metallopeptidase inhibitor 1##X02598|TIMP1|7076|TIMP metallopeptidase inhibitor 1	1.022909	denovo_WM_21:-32:0.946
chr11	67797987	67798111	reg1000363.p1	8.221	+	TSC_hg19_v1_chr11_+_67777796 AK092029 AX747322 U10868 BC013584 BC033099	-20234	+	TSC_hg19_v1_chr11_+_67777790 NM_000694 NM_001030010 BC002553 AK291505	-20259	+	TSC_hg19_v1_chr11_+_67776039 EF411198 NM_001161473	-22018	+	TSC_hg19_v1_chr11_+_67798158 AK302449 NM_002496 AK223114 BC119753 BC119754 AK314546 U65579 AK002110	109	+	TSC_hg19_v1_chr11_+_67806477 NM_006019 BC018133 BC032465	8423	+	TSC_hg19_v1_chr11_+_67806519 U45285 AY548967	8495	+	AK092029|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##U10868|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##BC013584|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##BC033099|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##NM_000694|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##NM_001030010|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##BC002553|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##AK291505|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##EF411198|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##NM_001161473|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##AK302449|NDUFS8|4728|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)##NM_002496|NDUFS8|4728|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)##AK223114|NDUFS8|4728|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)##BC119753|NDUFS8|4728|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)##BC119754|NDUFS8|4728|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)##AK314546|NDUFS8|4728|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)##U65579|NDUFS8|4728|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)##AK002110|NDUFS8|4728|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)##NM_006019|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3##BC018133|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3##BC032465|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3##U45285|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3##AY548967|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3	1.850061	denovo_WM_21:20:0.238	denovo_WM_21:-32:0.960	denovo_WM_21:-96:0.637
chr6	160211361	160211479	reg1000499.p2	8.214	+	TSC_hg19_v1_chr6_+_160210978 AK311391	-417	+	TSC_hg19_v1_chr6_-_160210701 AK308551 AK312604 NM_001008897 NM_030752	-703	-	BT006969 CU674328 DQ890600 DQ893771 X52882 TSC_hg19_v1_chr6_-_160210635 BC000665	-829	-	TSC_hg19_v1_chr6_+_160211500 NM_014161 AF161556 BC001623 AL136633 AK292647 AB528185 AM393775 CR533491	130	+	TSC_hg19_v1_chr6_+_160221313 AK097559 NM_173516 AK093139 AX747947 BC112246	9923	+	BC069142 BC069581 BC110454 NM_002377 CU686912 CR542261	116559	+	AK311391|MRPL18|29074|mitochondrial ribosomal protein L18##AK312604|TCP1|6950|t-complex 1##NM_001008897|TCP1|6950|t-complex 1##NM_030752|TCP1|6950|t-complex 1##BT006969|TCP1|6950|t-complex 1##DQ890600|TCP1|6950|t-complex 1##DQ893771|TCP1|6950|t-complex 1##X52882|TCP1|6950|t-complex 1##BC000665|TCP1|6950|t-complex 1##NM_014161|MRPL18|29074|mitochondrial ribosomal protein L18##AF161556|MRPL18|29074|mitochondrial ribosomal protein L18##BC001623|MRPL18|29074|mitochondrial ribosomal protein L18##AL136633|MRPL18|29074|mitochondrial ribosomal protein L18##AM393775|MRPL18|29074|mitochondrial ribosomal protein L18##CR533491|MRPL18|29074|mitochondrial ribosomal protein L18##AK097559|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##NM_173516|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##AK093139|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##BC112246|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##BC069142|MAS1|4142|MAS1 oncogene##BC069581|MAS1|4142|MAS1 oncogene##BC110454|MAS1|4142|MAS1 oncogene##NM_002377|MAS1|4142|MAS1 oncogene##CR542261|MAS1|4142|MAS1 oncogene	0.010841	
chr4	166248666	166248780	reg1000308.p1	8.212	+	NM_001161521 NM_001161522 AK294103 BX647776	-117545	+	TSC_hg19_v1_chr4_+_166128825 BC036468 AF059569 AK315372 DQ893638 DQ895588 CU690356	-119798	+	NM_007246 TSC_hg19_v1_chr4_+_166128778 BC022503	-119940	+	TSC_hg19_v1_chr4_+_166248871 NM_001017369 NM_006745 U93162 BC107879 AK295432 AK292418 AK309206	132	+	TSC_hg19_v1_chr4_+_166300000 X51405 NM_001873 AK090962 AK127165 AK294175 AK290996 BC053612 BC033866 CU689780 DQ893322 DQ896637	51434	+	NM_001204760 NM_012464 U91963 BC136429 BC136430 BC144084 BC144085	545731	+	NM_001161521|KLHL2|11275|kelch-like 2, Mayven (Drosophila)##NM_001161522|KLHL2|11275|kelch-like 2, Mayven (Drosophila)##AK294103|KLHL2|11275|kelch-like 2, Mayven (Drosophila)##BX647776|KLHL2|11275|kelch-like 2, Mayven (Drosophila)##BC036468|KLHL2|11275|kelch-like 2, Mayven (Drosophila)##AF059569|KLHL2|11275|kelch-like 2, Mayven (Drosophila)##AK315372|KLHL2|11275|kelch-like 2, Mayven (Drosophila)##DQ893638|KLHL2|11275|kelch-like 2, Mayven (Drosophila)##DQ895588|KLHL2|11275|kelch-like 2, Mayven (Drosophila)##NM_007246|KLHL2|11275|kelch-like 2, Mayven (Drosophila)##BC022503|KLHL2|11275|kelch-like 2, Mayven (Drosophila)##NM_001017369|MSMO1|6307|methylsterol monooxygenase 1##NM_006745|MSMO1|6307|methylsterol monooxygenase 1##U93162|MSMO1|6307|methylsterol monooxygenase 1##BC107879|MSMO1|6307|methylsterol monooxygenase 1##AK295432|MSMO1|6307|methylsterol monooxygenase 1##AK292418|MSMO1|6307|methylsterol monooxygenase 1##AK309206|MSMO1|6307|methylsterol monooxygenase 1##X51405|CPE|1363|carboxypeptidase E##NM_001873|CPE|1363|carboxypeptidase E##AK090962|CPE|1363|carboxypeptidase E##AK127165|CPE|1363|carboxypeptidase E##AK294175|CPE|1363|carboxypeptidase E##AK290996|CPE|1363|carboxypeptidase E##BC053612|CPE|1363|carboxypeptidase E##BC033866|CPE|1363|carboxypeptidase E##DQ893322|CPE|1363|carboxypeptidase E##DQ896637|CPE|1363|carboxypeptidase E##NM_001204760|TLL1|7092|tolloid-like 1##NM_012464|TLL1|7092|tolloid-like 1##U91963|TLL1|7092|tolloid-like 1##BC136429|TLL1|7092|tolloid-like 1##BC136430|TLL1|7092|tolloid-like 1##BC144084|TLL1|7092|tolloid-like 1##BC144085|TLL1|7092|tolloid-like 1	1.114056	denovo_WM_21:25:0.523	denovo_WM_21:67:0.329
chr19	1039976	1040101	reg1000431.p1	8.203	+	AK024835 AK057960 AK293171 TSC_hg19_v1_chr19_+_1026627 BC141818 BC141833 D83735 AK222924 AK300788 D86059 BC148264 CR541810 CR541831 AY927510 AY927514	-13376	+	TSC_hg19_v1_chr19_+_1026625 AK297774	-13414	+	TSC_hg19_v1_chr19_+_1026609 AK126391	-13428	+	TSC_hg19_v1_chr19_+_1040105 NM_019112	54	+	AK310127 TSC_hg19_v1_chr19_+_1040114 AK301108 AK310909	96	+	TSC_hg19_v1_chr19_+_1067170 BC065223 NM_012292	27105	+	AK024835|CNN2|1265|calponin 2##AK057960|CNN2|1265|calponin 2##AK293171|CNN2|1265|calponin 2##BC141818|CNN2|1265|calponin 2##BC141833|CNN2|1265|calponin 2##D83735|CNN2|1265|calponin 2##AK222924|CNN2|1265|calponin 2##AK300788|CNN2|1265|calponin 2##D86059|CNN2|1265|calponin 2##BC148264|CNN2|1265|calponin 2##CR541810|CNN2|1265|calponin 2##CR541831|CNN2|1265|calponin 2##AY927514|CNN2|1265|calponin 2##AK297774|CNN2|1265|calponin 2##AK126391|CNN2|1265|calponin 2##NM_019112|ABCA7|10347|ATP-binding cassette, sub-family A (ABC1), member 7##AK310127|ABCA7|10347|ATP-binding cassette, sub-family A (ABC1), member 7##AK301108|ABCA7|10347|ATP-binding cassette, sub-family A (ABC1), member 7##AK310909|ABCA7|10347|ATP-binding cassette, sub-family A (ABC1), member 7##BC065223|HMHA1|23526|histocompatibility (minor) HA-1##NM_012292|HMHA1|23526|histocompatibility (minor) HA-1	0.0	
chr19	2900714	2900856	reg1000426.p1	8.184	+	AK021699 AK225297 NM_024967 BC009374	-33443	+	NM_001172775 NM_152791 AK093163 AX747966 AL832140 BX647423 BC022022 AK292954	-59327	+	TSC_hg19_v1_chr19_+_2819942 BC000113 CU690506	-80780	+	EF534355 NM_173480 TSC_hg19_v1_chr19_+_2900954 BX537601 BC028974 AK314848	150	+	TSC_hg19_v1_chr19_-_2944927 AK290979 BC043354 BC062561 NM_021217	44158	-	TSC_hg19_v1_chr19_+_2977532 NM_001143986 NM_024760 AK024071 BC013986 BC020206 BC007329 BC068052	76781	+	AK021699|ZNF556|80032|zinc finger protein 556##AK225297|ZNF556|80032|zinc finger protein 556##NM_024967|ZNF556|80032|zinc finger protein 556##BC009374|ZNF556|80032|zinc finger protein 556##NM_001172775|ZNF555|148254|zinc finger protein 555##NM_152791|ZNF555|148254|zinc finger protein 555##AK093163|ZNF555|148254|zinc finger protein 555##AL832140|ZNF555|148254|zinc finger protein 555##BX647423|ZNF555|148254|zinc finger protein 555##BC022022|ZNF555|148254|zinc finger protein 555##AK292954|ZNF555|148254|zinc finger protein 555##BC000113|ZNF554|115196|zinc finger protein 554##EF534355|ZNF57|126295|zinc finger protein 57##NM_173480|ZNF57|126295|zinc finger protein 57##BX537601|ZNF57|126295|zinc finger protein 57##BC028974|ZNF57|126295|zinc finger protein 57##AK314848|ZNF57|126295|zinc finger protein 57##AK290979|ZNF77|58492|zinc finger protein 77##BC043354|ZNF77|58492|zinc finger protein 77##BC062561|ZNF77|58492|zinc finger protein 77##NM_021217|ZNF77|58492|zinc finger protein 77##NM_001143986|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)##NM_024760|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)##AK024071|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)##BC013986|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)##BC020206|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)##BC007329|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)##BC068052|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)	1.699594	denovo_WM_21:5:0.633	denovo_WM_21:-49:0.330	denovo_WM_21:90:0.737
chr3	38206615	38206769	reg1000504.p1	8.179	+	NM_001172566 NM_001172567 NM_001172568 NM_001172569 NM_002468 TSC_hg19_v1_chr3_+_38180156 AK296716 U84408 BX537602 AK298650 AK300448 AK296570 AK298666 AB463903 AK300051 BC013589 AL832906 AB446470 AK304676 BT007376	-26608	+	TSC_hg19_v1_chr3_-_38178584 AK316551 AK301056 BC039837 BC000635 NM_001130410 NM_001607	-28036	-	TSC_hg19_v1_chr3_-_38178570 BC025780	-28120	-	TSC_hg19_v1_chr3_+_38206993 AB017642 NM_005109 BC008726	349	+	TSC_hg19_v1_chr3_+_38207137 AK309634	453	+	TSC_hg19_v1_chr3_+_38207257 AB029024 AB384561 CU679061 DQ893255 DQ896584	614	+	NM_001172566|MYD88|4615|myeloid differentiation primary response gene (88)##NM_001172567|MYD88|4615|myeloid differentiation primary response gene (88)##NM_001172568|MYD88|4615|myeloid differentiation primary response gene (88)##NM_001172569|MYD88|4615|myeloid differentiation primary response gene (88)##NM_002468|MYD88|4615|myeloid differentiation primary response gene (88)##AK296716|MYD88|4615|myeloid differentiation primary response gene (88)##U84408|MYD88|4615|myeloid differentiation primary response gene (88)##BX537602|MYD88|4615|myeloid differentiation primary response gene (88)##AK298650|MYD88|4615|myeloid differentiation primary response gene (88)##AK300448|MYD88|4615|myeloid differentiation primary response gene (88)##AK296570|MYD88|4615|myeloid differentiation primary response gene (88)##AK298666|MYD88|4615|myeloid differentiation primary response gene (88)##AK300051|MYD88|4615|myeloid differentiation primary response gene (88)##BC013589|MYD88|4615|myeloid differentiation primary response gene (88)##AL832906|MYD88|4615|myeloid differentiation primary response gene (88)##AB446470|MYD88|4615|myeloid differentiation primary response gene (88)##AK304676|MYD88|4615|myeloid differentiation primary response gene (88)##BT007376|MYD88|4615|myeloid differentiation primary response gene (88)##AK316551|ACAA1|30|acetyl-CoA acyltransferase 1##AK301056|ACAA1|30|acetyl-CoA acyltransferase 1##BC039837|ACAA1|30|acetyl-CoA acyltransferase 1##BC000635|ACAA1|30|acetyl-CoA acyltransferase 1##NM_001130410|ACAA1|30|acetyl-CoA acyltransferase 1##NM_001607|ACAA1|30|acetyl-CoA acyltransferase 1##BC025780|ACAA1|30|acetyl-CoA acyltransferase 1##AB017642|OXSR1|9943|oxidative-stress responsive 1##NM_005109|OXSR1|9943|oxidative-stress responsive 1##BC008726|OXSR1|9943|oxidative-stress responsive 1##AK309634|OXSR1|9943|oxidative-stress responsive 1##AB029024|OXSR1|9943|oxidative-stress responsive 1##DQ893255|OXSR1|9943|oxidative-stress responsive 1##DQ896584|OXSR1|9943|oxidative-stress responsive 1	0.293664	denovo_WM_21:3:0.294
chr9	74526186	74526365	reg1000498.p1	8.167	+	TSC_hg19_v1_chr9_-_74526110 BC044576 NM_001025780 NM_016014 AK293060	-119	-	AF151825 TSC_hg19_v1_chr9_-_74525994	-350	-	BC140773 BC144510 BC171782 AB037833 BC146780 TSC_hg19_v1_chr9_-_74383430 AF137030 AK300405 AK056807 NM_001135820 NM_013390	-142697	-	TSC_hg19_v1_chr9_+_74526393 NM_182505 BC010179	126	+	TSC_hg19_v1_chr9_+_74526557 AK311206 BC028019 BC052375 AK307186 CU690912	313	+	BC044620 BC053956 BC036255 NM_001128618	149234	-	BC044576|FAM108B1|51104|family with sequence similarity 108, member B1##NM_001025780|FAM108B1|51104|family with sequence similarity 108, member B1##NM_016014|FAM108B1|51104|family with sequence similarity 108, member B1##AK293060|FAM108B1|51104|family with sequence similarity 108, member B1##AF151825|FAM108B1|51104|family with sequence similarity 108, member B1##BC140773|TMEM2|23670|transmembrane protein 2##BC144510|TMEM2|23670|transmembrane protein 2##BC171782|TMEM2|23670|transmembrane protein 2##AB037833|TMEM2|23670|transmembrane protein 2##BC146780|TMEM2|23670|transmembrane protein 2##AF137030|TMEM2|23670|transmembrane protein 2##AK300405|TMEM2|23670|transmembrane protein 2##NM_001135820|TMEM2|23670|transmembrane protein 2##NM_013390|TMEM2|23670|transmembrane protein 2##NM_182505|C9orf85|138241|chromosome 9 open reading frame 85##BC010179|C9orf85|138241|chromosome 9 open reading frame 85##AK311206|C9orf85|138241|chromosome 9 open reading frame 85##BC028019|C9orf85|138241|chromosome 9 open reading frame 85##BC052375|C9orf85|138241|chromosome 9 open reading frame 85##AK307186|C9orf85|138241|chromosome 9 open reading frame 85##BC044620|C9orf57|138240|chromosome 9 open reading frame 57##BC053956|C9orf57|138240|chromosome 9 open reading frame 57##BC036255|C9orf57|138240|chromosome 9 open reading frame 57##NM_001128618|C9orf57|138240|chromosome 9 open reading frame 57	2.323907	denovo_WM_21:16:0.946	denovo_WM_21:70:0.677	denovo_WM_21:-78:0.685
chr10	105992121	105992229	reg1000333.p1	8.166	+	AL136901 TSC_hg19_v1_chr10_-_105992103 AK026597 AK295018 BC071565 BC036647 NM_025145	-81	-	NM_145247 BC140835 NM_001002759 BC043256 AK291184	-110266	+	BC004478 D63465 TSC_hg19_v1_chr10_-_105845639 NM_000494	-146546	-	NM_001191003	21776	+	NM_001191002 NM_004832 BX537431 TSC_hg19_v1_chr10_+_106014658 AK313680 BC000127 AF212303 U90313 AB590772	22406	+	BC056918 NM_001191013 NM_183239	36455	+	AL136901|WDR96|80217|WD repeat domain 96##AK026597|WDR96|80217|WD repeat domain 96##AK295018|WDR96|80217|WD repeat domain 96##BC071565|WDR96|80217|WD repeat domain 96##BC036647|WDR96|80217|WD repeat domain 96##NM_025145|WDR96|80217|WD repeat domain 96##NM_145247|SFR1|119392|SWI5-dependent recombination repair 1##BC140835|SFR1|119392|SWI5-dependent recombination repair 1##NM_001002759|SFR1|119392|SWI5-dependent recombination repair 1##BC043256|SFR1|119392|SWI5-dependent recombination repair 1##AK291184|SFR1|119392|SWI5-dependent recombination repair 1##BC004478|COL17A1|1308|collagen, type XVII, alpha 1##D63465|COL17A1|1308|collagen, type XVII, alpha 1##NM_000494|COL17A1|1308|collagen, type XVII, alpha 1##NM_001191003|GSTO1|9446|glutathione S-transferase omega 1##NM_001191002|GSTO1|9446|glutathione S-transferase omega 1##NM_004832|GSTO1|9446|glutathione S-transferase omega 1##BX537431|GSTO1|9446|glutathione S-transferase omega 1##AK313680|GSTO1|9446|glutathione S-transferase omega 1##BC000127|GSTO1|9446|glutathione S-transferase omega 1##AF212303|GSTO1|9446|glutathione S-transferase omega 1##U90313|GSTO1|9446|glutathione S-transferase omega 1##BC056918|GSTO2|119391|glutathione S-transferase omega 2##NM_001191013|GSTO2|119391|glutathione S-transferase omega 2##NM_183239|GSTO2|119391|glutathione S-transferase omega 2	1.298951	denovo_WM_21:-26:0.858	denovo_WM_21:44:0.441
chr12	21654597	21654699	reg1000267.p1	8.158	+	BC001052 TSC_hg19_v1_chr12_-_21654530 AK291627 NM_002907 NM_032941	-105	-	TSC_hg19_v1_chr12_-_21654212 AY157499	-377	-	NM_024854 AK293820 TSC_hg19_v1_chr12_+_21590611 AL832441 AK025681 AK307710 BC021662 CU692376	-64049	+	NM_016072 AK311331 TSC_hg19_v1_chr12_+_21654722 AF068292 AK309736	70	+	TSC_hg19_v1_chr12_+_21654752 AB097020 AK310889 AF151899 BC012455 AY358975 AK311920 AL136571 CU680332 CR457389	153	+	TSC_hg19_v1_chr12_+_21679232 AK075342 BC004336 NM_030572 AK027273	24623	+	BC001052|RECQL|5965|RecQ protein-like (DNA helicase Q1-like)##AK291627|RECQL|5965|RecQ protein-like (DNA helicase Q1-like)##NM_002907|RECQL|5965|RecQ protein-like (DNA helicase Q1-like)##NM_032941|RECQL|5965|RecQ protein-like (DNA helicase Q1-like)##AY157499|RECQL|5965|RecQ protein-like (DNA helicase Q1-like)##NM_024854|PYROXD1|79912|pyridine nucleotide-disulphide oxidoreductase domain 1##AK293820|PYROXD1|79912|pyridine nucleotide-disulphide oxidoreductase domain 1##AL832441|PYROXD1|79912|pyridine nucleotide-disulphide oxidoreductase domain 1##AK025681|PYROXD1|79912|pyridine nucleotide-disulphide oxidoreductase domain 1##AK307710|PYROXD1|79912|pyridine nucleotide-disulphide oxidoreductase domain 1##BC021662|PYROXD1|79912|pyridine nucleotide-disulphide oxidoreductase domain 1##NM_016072|GOLT1B|51026|golgi transport 1B##AK311331|GOLT1B|51026|golgi transport 1B##AF068292|GOLT1B|51026|golgi transport 1B##AK309736|GOLT1B|51026|golgi transport 1B##AB097020|GOLT1B|51026|golgi transport 1B##AK310889|GOLT1B|51026|golgi transport 1B##AF151899|GOLT1B|51026|golgi transport 1B##BC012455|GOLT1B|51026|golgi transport 1B##AY358975|GOLT1B|51026|golgi transport 1B##AK311920|GOLT1B|51026|golgi transport 1B##AL136571|GOLT1B|51026|golgi transport 1B##CR457389|GOLT1B|51026|golgi transport 1B##AK075342|C12orf39|80763|chromosome 12 open reading frame 39##BC004336|C12orf39|80763|chromosome 12 open reading frame 39##NM_030572|C12orf39|80763|chromosome 12 open reading frame 39##AK027273|C12orf39|80763|chromosome 12 open reading frame 39	1.914221	denovo_WM_21:-29:0.590	denovo_WM_21:-52:0.952	denovo_WM_21:52:0.372
chr19	2740046	2740194	reg1000339.p1	8.153	+	TSC_hg19_v1_chr19_-_2740065 NM_144564 NM_213568	-53	-	TSC_hg19_v1_chr19_-_2740016 AK302600 BC020571 AK002044	-92	-	TSC_hg19_v1_chr19_-_2740007 BC005869	-116	-	TSC_hg19_v1_chr19_-_2783272 AJ133129 BC005165 BC008885 BC000390 BC002989	43142	-	TSC_hg19_v1_chr19_-_2783313 AL050156	43194	-	AK293535 TSC_hg19_v1_chr19_-_2783326	43207	-	NM_144564|SLC39A3|29985|solute carrier family 39 (zinc transporter), member 3##NM_213568|SLC39A3|29985|solute carrier family 39 (zinc transporter), member 3##AK302600|SLC39A3|29985|solute carrier family 39 (zinc transporter), member 3##BC020571|SLC39A3|29985|solute carrier family 39 (zinc transporter), member 3##AK002044|SLC39A3|29985|solute carrier family 39 (zinc transporter), member 3##BC005869|SLC39A3|29985|solute carrier family 39 (zinc transporter), member 3##AJ133129|SGTA|6449|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha##BC005165|SGTA|6449|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha##BC008885|SGTA|6449|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha##BC000390|SGTA|6449|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha##BC002989|SGTA|6449|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha##AL050156|SGTA|6449|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha##AK293535|SGTA|6449|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	0.76673	denovo_WM_21:-43:0.720
chr7	74988313	74988484	reg1000564.p1	8.146	+	NM_001145064 BC147030 BC147031 TSC_hg19_v1_chr7_-_74867623 BC150658 AK299175 BC045632	-120878	-	NM_001003795 AK098269 AY312850 AK291431 BC067859 BC136849 AK225845 AY312853 AY312851	-480024	+	TSC_hg19_v1_chr7_-_74489687 BC040695 NM_030798	-498706	-	AK316130 AY313779 BC108680 AK289466 AK307228 AK309007 BC010433 TSC_hg19_v1_chr7_+_74988510 AK303592 BC066937	172	+	AF498998 AF498999 NM_198853 NM_198924 AK309306	36567	+	AK126486 TSC_hg19_v1_chr7_+_75039644 BC044928 BC103750	51256	+	NM_001145064|GATSL2|729438|GATS protein-like 2##BC147030|GATSL2|729438|GATS protein-like 2##BC147031|GATSL2|729438|GATS protein-like 2##BC150658|GATSL2|729438|GATS protein-like 2##AK299175|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##BC045632|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##NM_001003795|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK098269|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312850|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK291431|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC067859|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC136849|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK225845|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312853|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312851|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC040695|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##NM_030798|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##AK316130|STAG3L1|54441|stromal antigen 3-like 1##AY313779|STAG3L3|442578|stromal antigen 3-like 3##BC108680|STAG3L3|442578|stromal antigen 3-like 3##AK289466|STAG3L1|54441|stromal antigen 3-like 1##AK307228|STAG3L2|442582|stromal antigen 3-like 2##AK309007|STAG3L2|442582|stromal antigen 3-like 2##BC010433|STAG3L1|54441|stromal antigen 3-like 1##AK303592|STAG3L3|442578|stromal antigen 3-like 3##BC066937|STAG3L3|442578|stromal antigen 3-like 3##AF498998|TRIM73|375593|tripartite motif containing 73##AF498999|TRIM74|378108|tripartite motif containing 74##NM_198853|TRIM74|378108|tripartite motif containing 74##NM_198924|TRIM73|375593|tripartite motif containing 73##AK126486|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1##BC044928|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1##BC103750|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1	1.96408	denovo_WM_21:28:0.981	denovo_WM_21:-96:0.972
chr14	39644243	39644392	reg1000526.p1	8.144	+	AK310730 TSC_hg19_v1_chr14_-_39639538 AK294339 AL833179 BC047328 BX161510 AK315900 BX248013 AK056690 NM_001079537 NM_177452 BC030604	-4745	-	AF027150 NM_001009182 NM_001009183 NM_003616 BC028095 BC104968 AK313947 AB037701 AB037702 AB037703	-60850	+	TSC_hg19_v1_chr14_-_39572440 AK299862 BC036649 NM_006364 AK303485	-71884	-	TSC_hg19_v1_chr14_+_39644403 NM_002687 AK292579 AK223612 U77718 BC062602 Y09703 Y10351	112	+	AK304622 TSC_hg19_v1_chr14_+_39649841	5459	+	AK314069 BX648228 NM_054024 BC035981 BC130537 BC130563 AB527370 AM393252 AM393582 HQ258350 AF390175	58901	+	AK310730|TRAPPC6B|122553|trafficking protein particle complex 6B##AK294339|TRAPPC6B|122553|trafficking protein particle complex 6B##AL833179|TRAPPC6B|122553|trafficking protein particle complex 6B##BC047328|TRAPPC6B|122553|trafficking protein particle complex 6B##BX161510|TRAPPC6B|122553|trafficking protein particle complex 6B##AK315900|TRAPPC6B|122553|trafficking protein particle complex 6B##BX248013|TRAPPC6B|122553|trafficking protein particle complex 6B##AK056690|TRAPPC6B|122553|trafficking protein particle complex 6B##NM_001079537|TRAPPC6B|122553|trafficking protein particle complex 6B##NM_177452|TRAPPC6B|122553|trafficking protein particle complex 6B##BC030604|TRAPPC6B|122553|trafficking protein particle complex 6B##AF027150|GEMIN2|8487|gem (nuclear organelle) associated protein 2##NM_001009182|GEMIN2|8487|gem (nuclear organelle) associated protein 2##NM_001009183|GEMIN2|8487|gem (nuclear organelle) associated protein 2##NM_003616|GEMIN2|8487|gem (nuclear organelle) associated protein 2##BC028095|GEMIN2|8487|gem (nuclear organelle) associated protein 2##BC104968|GEMIN2|8487|gem (nuclear organelle) associated protein 2##AK313947|GEMIN2|8487|gem (nuclear organelle) associated protein 2##AB037701|GEMIN2|8487|gem (nuclear organelle) associated protein 2##AB037702|GEMIN2|8487|gem (nuclear organelle) associated protein 2##AB037703|GEMIN2|8487|gem (nuclear organelle) associated protein 2##AK299862|SEC23A|10484|Sec23 homolog A (S. cerevisiae)##BC036649|SEC23A|10484|Sec23 homolog A (S. cerevisiae)##NM_006364|SEC23A|10484|Sec23 homolog A (S. cerevisiae)##AK303485|SEC23A|10484|Sec23 homolog A (S. cerevisiae)##NM_002687|PNN|5411|pinin, desmosome associated protein##AK292579|PNN|5411|pinin, desmosome associated protein##AK223612|PNN|5411|pinin, desmosome associated protein##U77718|PNN|5411|pinin, desmosome associated protein##BC062602|PNN|5411|pinin, desmosome associated protein##Y09703|PNN|5411|pinin, desmosome associated protein##AK304622|PNN|5411|pinin, desmosome associated protein##AK314069|MIA2|117153|melanoma inhibitory activity 2##BX648228|MIA2|117153|melanoma inhibitory activity 2##NM_054024|MIA2|117153|melanoma inhibitory activity 2##BC035981|MIA2|117153|melanoma inhibitory activity 2##BC130537|MIA2|117153|melanoma inhibitory activity 2##BC130563|MIA2|117153|melanoma inhibitory activity 2##AM393252|MIA2|117153|melanoma inhibitory activity 2##AM393582|MIA2|117153|melanoma inhibitory activity 2##HQ258350|MIA2|117153|melanoma inhibitory activity 2##AF390175|MIA2|117153|melanoma inhibitory activity 2	1.469847	denovo_WM_21:-12:0.925	denovo_WM_21:70:0.510
chr5	177631404	177631524	reg1000509.p2	8.144	+	TSC_hg19_v1_chr5_-_177580916 NM_001034833 NM_017838	-50528	-	CR457238 AF401219 TSC_hg19_v1_chr5_-_177580868 AK000486 BC000009 AF161404 AJ293309 BC006387	-50607	-	TSC_hg19_v1_chr5_+_177558026 BC009911 DQ494789 NM_022762	-73432	+	TSC_hg19_v1_chr5_+_177631530 AK097657 NM_004499 NM_031266	50	+	AK054600 TSC_hg19_v1_chr5_+_177631533	69	+	AK223425 TSC_hg19_v1_chr5_+_177631534 BC004561 BC009359 BC001616 BC002625 BC015556 BC036708 M65028	108	+	NM_001034833|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##NM_017838|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##CR457238|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##AF401219|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##AK000486|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##BC000009|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##AF161404|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##AJ293309|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##BC006387|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##BC009911|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##DQ494789|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##NM_022762|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##AK097657|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##NM_004499|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##NM_031266|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##AK054600|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##AK223425|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##BC004561|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##BC009359|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##BC001616|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##BC002625|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##BC015556|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##BC036708|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##M65028|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B	0.852065	denovo_WM_21:-1:0.789
chr8	145002709	145002881	reg1000236.p2	8.143	+	AB051895 NM_031308	-55362	-	TSC_hg19_v1_chr8_-_144923180 BC071605 AK293943 NM_178564	-79636	-	TSC_hg19_v1_chr8_-_144911540 AF114818 AK292373 NM_014281 NM_078480	-91245	-	AF330791 TSC_hg19_v1_chr8_-_145013766 AY480051 NM_201384	10908	-	AY480050 NM_201383 TSC_hg19_v1_chr8_-_145016793	13966	-	AF330792 AY480049 TSC_hg19_v1_chr8_-_145018117 NM_201382	15309	-	AB051895|EPPK1|83481|epiplakin 1##NM_031308|EPPK1|83481|epiplakin 1##BC071605|NRBP2|340371|nuclear receptor binding protein 2##AK293943|NRBP2|340371|nuclear receptor binding protein 2##NM_178564|NRBP2|340371|nuclear receptor binding protein 2##AF114818|PUF60|22827|poly-U binding splicing factor 60KDa##AK292373|PUF60|22827|poly-U binding splicing factor 60KDa##NM_014281|PUF60|22827|poly-U binding splicing factor 60KDa##NM_078480|PUF60|22827|poly-U binding splicing factor 60KDa##AY480051|PLEC|5339|plectin##NM_201384|PLEC|5339|plectin##AY480050|PLEC|5339|plectin##NM_201383|PLEC|5339|plectin##AF330792|PLEC|5339|plectin##AY480049|PLEC|5339|plectin##NM_201382|PLEC|5339|plectin	0.0	
chr11	65601283	65601389	reg1000450.p2	8.141	+	TSC_hg19_v1_chr11_+_65554569 AK291711 BX648725	-46741	+	NM_004561 BC059408 TSC_hg19_v1_chr11_+_65554533	-46813	+	NM_138368	-53515	-	TSC_hg19_v1_chr11_+_65601409 NM_152760 AK293827 AL833261 AK309789 AK296055 AK299512 BC040981 AK309435 AK289587 AK055496 AK311588 BC045563 CU691940 CU692270	130	+	X95404 BC011005 BC018256 BC012318 BC012265 TSC_hg19_v1_chr11_-_65625648 AK303614	24298	-	D28345 TSC_hg19_v1_chr11_-_65625651	24314	-	AK291711|OVOL1|5017|ovo-like 1(Drosophila)##BX648725|OVOL1|5017|ovo-like 1(Drosophila)##NM_004561|OVOL1|5017|ovo-like 1(Drosophila)##BC059408|OVOL1|5017|ovo-like 1(Drosophila)##NM_138368|DKFZp761E198|91056|adaptor protein 5##NM_152760|SNX32|254122|sorting nexin 32##AK293827|SNX32|254122|sorting nexin 32##AL833261|SNX32|254122|sorting nexin 32##AK309789|SNX32|254122|sorting nexin 32##AK296055|SNX32|254122|sorting nexin 32##AK299512|SNX32|254122|sorting nexin 32##BC040981|SNX32|254122|sorting nexin 32##AK309435|SNX32|254122|sorting nexin 32##AK289587|SNX32|254122|sorting nexin 32##AK055496|SNX32|254122|sorting nexin 32##BC045563|SNX32|254122|sorting nexin 32##X95404|CFL1|1072|cofilin 1 (non-muscle)##BC011005|CFL1|1072|cofilin 1 (non-muscle)##BC018256|CFL1|1072|cofilin 1 (non-muscle)##BC012318|CFL1|1072|cofilin 1 (non-muscle)##BC012265|CFL1|1072|cofilin 1 (non-muscle)	0.077727	
chr19	3035641	3035792	reg1000419.p2	8.123	+	AK293407 NM_001144762	-6105	-	CU675966 AK308608 M99436 AK312285 BC017364 AK303102 NM_003260 TSC_hg19_v1_chr19_-_3029294	-6617	-	TSC_hg19_v1_chr19_+_2977532 NM_001143986 NM_024760 AK024071 BC013986 BC020206 BC007329 BC068052	-58150	+	AK308137 NM_001144761	11916	-	X73358 TSC_hg19_v1_chr19_-_3061344	25581	-	X73357 TSC_hg19_v1_chr19_-_3062347 U04241 AF072902 AK314713 NM_001130 NM_198970	26566	-	AK293407|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)##NM_001144762|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)##AK308608|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)##M99436|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)##AK312285|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)##BC017364|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)##AK303102|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)##NM_003260|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)##NM_001143986|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)##NM_024760|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)##AK024071|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)##BC013986|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)##BC020206|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)##BC007329|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)##BC068052|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)##AK308137|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)##NM_001144761|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)##X73358|AES|166|amino-terminal enhancer of split##X73357|AES|166|amino-terminal enhancer of split##U04241|AES|166|amino-terminal enhancer of split##AF072902|AES|166|amino-terminal enhancer of split##AK314713|AES|166|amino-terminal enhancer of split##NM_001130|AES|166|amino-terminal enhancer of split##NM_198970|AES|166|amino-terminal enhancer of split	2.403431	denovo_WM_21:5:0.641	denovo_WM_21:30:0.730	denovo_WM_21:61:0.967
chr2	61765468	61765609	reg1000460.p1	8.123	+	TSC_hg19_v1_chr2_-_61765394 BX647758 NM_003400	-133	-	TSC_hg19_v1_chr2_-_61765383 BC032847 CR749840	-159	-	TSC_hg19_v1_chr2_-_61765358 AL833550	-183	-	BC107162 BC107163 AK310908 AB527366 AM392542 AM392832 AM393518 TSC_hg19_v1_chr2_-_62081180 BX648834 BX649029 AK023367 BC036448 NM_001201543 NM_032180	315625	-	U38846 EU446763 AB385091 TSC_hg19_v1_chr2_-_62115685 AK294665	350126	-	AK129860 TSC_hg19_v1_chr2_-_62115719 AK295330	350180	-	BX647758|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##NM_003400|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##BC032847|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##CR749840|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##AL833550|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##BC107162|FAM161A|84140|family with sequence similarity 161, member A##BC107163|FAM161A|84140|family with sequence similarity 161, member A##AK310908|FAM161A|84140|family with sequence similarity 161, member A##AM392542|FAM161A|84140|family with sequence similarity 161, member A##AM392832|FAM161A|84140|family with sequence similarity 161, member A##AM393518|FAM161A|84140|family with sequence similarity 161, member A##BX648834|FAM161A|84140|family with sequence similarity 161, member A##BX649029|FAM161A|84140|family with sequence similarity 161, member A##AK023367|FAM161A|84140|family with sequence similarity 161, member A##BC036448|FAM161A|84140|family with sequence similarity 161, member A##NM_001201543|FAM161A|84140|family with sequence similarity 161, member A##NM_032180|FAM161A|84140|family with sequence similarity 161, member A##U38846|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##EU446763|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK294665|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK129860|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK295330|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)	1.888083	denovo_WM_21:-18:0.912	denovo_WM_21:24:0.976
chr4	467983	468109	reg1000487.p1	8.118	+	BC098116 BC098259 BC098291 BC099730 TSC_hg19_v1_chr4_-_467940 BC040413 BC036795 BC060316 BC065035 AK024359 AK303674	-143	-	TSC_hg19_v1_chr4_+_331608 BC036854 BC057244 L15309 BC074853	-136376	+	TSC_hg19_v1_chr4_+_331602 NM_003441	-136451	+	TSC_hg19_v1_chr4_-_492928 AL834155 AK021514	24874	-	NM_001127178 NM_017733 TSC_hg19_v1_chr4_+_493009 AK296507 AK074815 AB162713	24957	+	TSC_hg19_v1_chr4_+_493025 AK074715 AK097244 AK309107 BC144576	24980	+	BC098116|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC098259|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC098291|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC099730|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC040413|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC060316|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##AK024359|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##AK303674|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC036854|ZNF141|7700|zinc finger protein 141##BC057244|ZNF141|7700|zinc finger protein 141##L15309|ZNF141|7700|zinc finger protein 141##BC074853|ZNF141|7700|zinc finger protein 141##NM_003441|ZNF141|7700|zinc finger protein 141##AL834155|ZNF721|170960|zinc finger protein 721##AK021514|ZNF721|170960|zinc finger protein 721##NM_001127178|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##NM_017733|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##AK296507|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##AK074815|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##AB162713|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##AK074715|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##AK097244|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##AK309107|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##BC144576|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G	0.978938	denovo_WM_21:-28:0.979
chr6	21593818	21593942	reg1000446.p1	8.115	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-1059157	+	CR749285 NM_001243076	-1189847	+	TSC_hg19_v1_chr6_+_20402109 BC099908 NM_001949	-1191777	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	492	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	72779	+	BC015850 NM_000948	703849	-	AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##BC099908|E2F3|1871|E2F transcription factor 3##NM_001949|E2F3|1871|E2F transcription factor 3##NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin	1.681784	denovo_WM_21:-7:0.967	denovo_WM_21:46:0.694
chr19	45394029	45394178	reg1000158.p1	8.104	+	BC003091 TSC_hg19_v1_chr19_+_45349584 AF058448 AB528739 DQ891829 DQ895015 CR456818 X80038 CU678368	-44420	+	TSC_hg19_v1_chr19_+_45349564 AK291330	-44540	+	NM_001042724 NM_002856 TSC_hg19_v1_chr19_+_45349482	-44661	+	TSC_hg19_v1_chr19_+_45394505 NM_001128916 NM_001128917 NM_006114 BC047528 AF043250	381	+	TSC_hg19_v1_chr19_+_45394522 BC001779 BC012134 BC006413	437	+	TSC_hg19_v1_chr19_+_45394570 BC017224	468	+	BC003091|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)##AF058448|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)##DQ891829|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)##DQ895015|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)##CR456818|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)##X80038|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)##AK291330|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)##NM_001042724|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)##NM_002856|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)##NM_001128916|TOMM40|10452|translocase of outer mitochondrial membrane 40 homolog (yeast)##NM_001128917|TOMM40|10452|translocase of outer mitochondrial membrane 40 homolog (yeast)##NM_006114|TOMM40|10452|translocase of outer mitochondrial membrane 40 homolog (yeast)##BC047528|TOMM40|10452|translocase of outer mitochondrial membrane 40 homolog (yeast)##AF043250|TOMM40|10452|translocase of outer mitochondrial membrane 40 homolog (yeast)##BC001779|TOMM40|10452|translocase of outer mitochondrial membrane 40 homolog (yeast)##BC012134|TOMM40|10452|translocase of outer mitochondrial membrane 40 homolog (yeast)##BC006413|TOMM40|10452|translocase of outer mitochondrial membrane 40 homolog (yeast)##BC017224|TOMM40|10452|translocase of outer mitochondrial membrane 40 homolog (yeast)	1.948451	denovo_WM_21:6:0.960	denovo_WM_21:-48:0.988
chr7	6769156	6769313	reg1000494.p2	8.096	+	AK092111 TSC_hg19_v1_chr7_+_6746715	-22525	+	TSC_hg19_v1_chr7_-_6746579 BC051892 BC154414 AB021643 NM_006956 NM_016265 AK293925	-22654	-	NM_017560	-113708	+	TSC_hg19_v1_chr7_+_6769414 AK296451	181	+	AK314983 BC034495 NM_001099697 NM_173565	24505	+	AK296026 CU679629 AK000993 TSC_hg19_v1_chr7_-_6865849	96604	-	BC051892|ZNF12|7559|zinc finger protein 12##BC154414|ZNF12|7559|zinc finger protein 12##AB021643|ZNF12|7559|zinc finger protein 12##NM_006956|ZNF12|7559|zinc finger protein 12##NM_016265|ZNF12|7559|zinc finger protein 12##AK293925|ZNF12|7559|zinc finger protein 12##NM_017560|ZNF853|54753|zinc finger protein 853##AK314983|RSPH10B2|728194|radial spoke head 10 homolog B2 (Chlamydomonas)##BC034495|RSPH10B|222967|radial spoke head 10 homolog B (Chlamydomonas)##NM_001099697|RSPH10B2|728194|radial spoke head 10 homolog B2 (Chlamydomonas)##NM_173565|RSPH10B|222967|radial spoke head 10 homolog B (Chlamydomonas)##AK296026|CCZ1B|221960|CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)##AK000993|CCZ1B|221960|CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)	0.0	
chr6	147523625	147523765	reg1000511.p1	8.093	+	AK097570 NM_024694 AL832192	-603558	+	TSC_hg19_v1_chr6_+_146864968 AK312202 U71127 AB529170 CU677203 DQ892882 DQ896131 AF498958 BT020016 U59878	-658687	+	BC015061 NM_006834 TSC_hg19_v1_chr6_+_146864864	-658826	+	TSC_hg19_v1_chr6_+_147524880 BC043645	1179	+	NM_001127715 NM_139244 AL834152 BC107737 BC113382 BC113408	1861	+	TSC_hg19_v1_chr6_+_147527118 AK128121	3415	+	AK097570|C6orf103|79747|chromosome 6 open reading frame 103##NM_024694|C6orf103|79747|chromosome 6 open reading frame 103##AL832192|C6orf103|79747|chromosome 6 open reading frame 103##AK312202|RAB32|10981|RAB32, member RAS oncogene family##U71127|RAB32|10981|RAB32, member RAS oncogene family##DQ892882|RAB32|10981|RAB32, member RAS oncogene family##DQ896131|RAB32|10981|RAB32, member RAS oncogene family##AF498958|RAB32|10981|RAB32, member RAS oncogene family##BT020016|RAB32|10981|RAB32, member RAS oncogene family##U59878|RAB32|10981|RAB32, member RAS oncogene family##BC015061|RAB32|10981|RAB32, member RAS oncogene family##NM_006834|RAB32|10981|RAB32, member RAS oncogene family##BC043645|STXBP5|134957|syntaxin binding protein 5 (tomosyn)##NM_001127715|STXBP5|134957|syntaxin binding protein 5 (tomosyn)##NM_139244|STXBP5|134957|syntaxin binding protein 5 (tomosyn)##AL834152|STXBP5|134957|syntaxin binding protein 5 (tomosyn)##BC107737|STXBP5|134957|syntaxin binding protein 5 (tomosyn)##BC113382|STXBP5|134957|syntaxin binding protein 5 (tomosyn)##BC113408|STXBP5|134957|syntaxin binding protein 5 (tomosyn)##AK128121|STXBP5|134957|syntaxin binding protein 5 (tomosyn)	0.166854	
chr19	3971199	3971322	reg1000314.p1	8.086	+	TSC_hg19_v1_chr19_-_3971095 AK097643	-156	-	TSC_hg19_v1_chr19_-_3971078 AK027590	-205	-	HQ258253 AB590865 BC126432 BC126430 AB022341 AK074799 AB007144 NM_001348	-1481	-	TSC_hg19_v1_chr19_-_3980010 M19997	8721	-	TSC_hg19_v1_chr19_-_3980565 BC024689	9480	-	TSC_hg19_v1_chr19_-_3984195 AB527843 AY942181 HQ258667 X51466 Z11692	12991	-	AK097643|DAPK3|1613|death-associated protein kinase 3##AK027590|DAPK3|1613|death-associated protein kinase 3##HQ258253|DAPK3|1613|death-associated protein kinase 3##BC126432|DAPK3|1613|death-associated protein kinase 3##BC126430|DAPK3|1613|death-associated protein kinase 3##AB022341|DAPK3|1613|death-associated protein kinase 3##AK074799|DAPK3|1613|death-associated protein kinase 3##AB007144|DAPK3|1613|death-associated protein kinase 3##NM_001348|DAPK3|1613|death-associated protein kinase 3##M19997|EEF2|1938|eukaryotic translation elongation factor 2##BC024689|EEF2|1938|eukaryotic translation elongation factor 2##AY942181|EEF2|1938|eukaryotic translation elongation factor 2##HQ258667|EEF2|1938|eukaryotic translation elongation factor 2##X51466|EEF2|1938|eukaryotic translation elongation factor 2##Z11692|EEF2|1938|eukaryotic translation elongation factor 2	1.279418	denovo_WM_21:28:0.540	denovo_WM_21:-90:0.739
chrX	153656848	153656962	reg1000481.p1	8.085	+	X90393 L40823 NM_001009932 NM_001009933 NM_001009934 TSC_hg19_v1_chrX_-_153640439	-16500	-	TSC_hg19_v1_chrX_+_153639881 NM_000116 NM_181311 NM_181312 NM_181313 X92762 BC005062 AK291848 BC011515 AY231461 AY231462 AY231463 AY231464 AY258036 AY258037 AY258038 AY258039 AM392997 AM393205 DQ884408	-16881	+	AY927624 BC001561 U06846 NM_006730 BC028092	-19347	-	NM_001183 TSC_hg19_v1_chrX_+_153657022 AK289452 AK075284 AK301603 BC000724 AK130616	95	+	TSC_hg19_v1_chrX_+_153657032 AB528071 AM392567 AM393312 AM393872 CU674364 DQ892139 DQ895333 AK090462 AL136851	132	+	TSC_hg19_v1_chrX_+_153657130 AK091083 AX746770	249	+	X90393|DNASE1L1|1774|deoxyribonuclease I-like 1##L40823|DNASE1L1|1774|deoxyribonuclease I-like 1##NM_001009932|DNASE1L1|1774|deoxyribonuclease I-like 1##NM_001009933|DNASE1L1|1774|deoxyribonuclease I-like 1##NM_001009934|DNASE1L1|1774|deoxyribonuclease I-like 1##NM_000116|TAZ|6901|tafazzin##NM_181311|TAZ|6901|tafazzin##NM_181312|TAZ|6901|tafazzin##NM_181313|TAZ|6901|tafazzin##X92762|TAZ|6901|tafazzin##BC005062|TAZ|6901|tafazzin##AK291848|TAZ|6901|tafazzin##BC011515|TAZ|6901|tafazzin##AY231461|TAZ|6901|tafazzin##AY231462|TAZ|6901|tafazzin##AY231463|TAZ|6901|tafazzin##AY231464|TAZ|6901|tafazzin##AY258036|TAZ|6901|tafazzin##AY258037|TAZ|6901|tafazzin##AY258038|TAZ|6901|tafazzin##AY258039|TAZ|6901|tafazzin##AM392997|TAZ|6901|tafazzin##AM393205|TAZ|6901|tafazzin##DQ884408|TAZ|6901|tafazzin##BC001561|DNASE1L1|1774|deoxyribonuclease I-like 1##U06846|DNASE1L1|1774|deoxyribonuclease I-like 1##NM_006730|DNASE1L1|1774|deoxyribonuclease I-like 1##BC028092|DNASE1L1|1774|deoxyribonuclease I-like 1##NM_001183|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1##AK289452|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1##AK075284|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1##AK301603|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1##BC000724|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1##AK130616|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1##AM392567|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1##AM393312|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1##AM393872|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1##DQ892139|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1##DQ895333|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1##AK090462|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1##AL136851|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1##AK091083|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1	0.409205	denovo_WM_21:47:0.269
chr1	161195604	161195740	reg1000547.p1	8.077	+	TSC_hg19_v1_chr1_-_161193419 AK312034 BC005282 NM_001643	-2274	-	BT006786 AB590164 DQ892493 DQ895705 AB106565 M29882 X00955 TSC_hg19_v1_chr1_-_161193333	-2409	-	TSC_hg19_v1_chr1_+_161185087 M33195 NM_004106 BC033872 AB590329 DQ890782 EU176502	-10575	+	NM_032174 TSC_hg19_v1_chr1_+_161195849 AK022832 AK027704 AK297848 BX537951 AK297831	185	+	AK310773 AY572806 AY572807 AY572808 AY572809 AY572810 AY572811 AY572812 AY572813 AY572814 AY572815 AY572816 AY572817 AY572818 AY572819 AY572820 AY572821 AY572822 AY572823 AY572824 AY572825 AY572826 AY572827 BC121120 BC121121 BC030972 BC069626 BC069651 AK316208 AK303757 NM_001077469 NM_001077470 NM_001077471 NM_001077472 NM_001077473 NM_001077474 NM_001077475 NM_001077476 NM_001077477 NM_001077478 NM_001077479 NM_001077480 NM_001077481 NM_001077482 NM_005122 AK303796	12284	-	BC028905 NM_001102566 TSC_hg19_v1_chr1_+_161228534 BC067884 BC147003 BC147004	32893	+	AK312034|APOA2|336|apolipoprotein A-II##BC005282|APOA2|336|apolipoprotein A-II##NM_001643|APOA2|336|apolipoprotein A-II##BT006786|APOA2|336|apolipoprotein A-II##DQ892493|APOA2|336|apolipoprotein A-II##DQ895705|APOA2|336|apolipoprotein A-II##AB106565|APOA2|336|apolipoprotein A-II##M29882|APOA2|336|apolipoprotein A-II##X00955|APOA2|336|apolipoprotein A-II##M33195|FCER1G|2207|Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide##NM_004106|FCER1G|2207|Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide##BC033872|FCER1G|2207|Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide##DQ890782|FCER1G|2207|Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide##EU176502|FCER1G|2207|Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide##NM_032174|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##AK022832|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##AK027704|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##AK297848|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##BX537951|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##AK297831|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##AK310773|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572806|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572807|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572808|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572809|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572810|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572811|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572812|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572813|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572814|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572815|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572816|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572817|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572818|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572819|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572820|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572821|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572822|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572823|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572824|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572825|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572826|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572827|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##BC121120|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##BC121121|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##BC030972|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##BC069626|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##BC069651|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AK316208|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AK303757|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077469|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077470|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077471|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077472|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077473|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077474|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077475|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077476|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077477|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077478|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077479|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077480|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077481|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077482|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_005122|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AK303796|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##BC028905|PCP4L1|654790|Purkinje cell protein 4 like 1##NM_001102566|PCP4L1|654790|Purkinje cell protein 4 like 1##BC067884|PCP4L1|654790|Purkinje cell protein 4 like 1##BC147003|PCP4L1|654790|Purkinje cell protein 4 like 1##BC147004|PCP4L1|654790|Purkinje cell protein 4 like 1	0.988313	denovo_WM_21:14:0.937
chr11	31531163	31531299	reg1000560.p2	8.069	+	AK311611 BC023595 TSC_hg19_v1_chr11_-_31531154 AK310496 AK057788 NM_144981	-87	-	TSC_hg19_v1_chr11_+_31391404 NM_181706 AK123087 AL833128 AK289665 BC036571 BC044931 BC063804	-139829	+	AY247970 AK126066 NM_181807	-139893	-	AK000505 NM_019040 TSC_hg19_v1_chr11_+_31531319 AK304885 AL136677 DQ891468 DQ894651 BC012514 AB463022 AM393460 AM393857	82	+	AK094249 TSC_hg19_v1_chr11_-_31825606	294369	-	M77844 TSC_hg19_v1_chr11_-_31832670	301403	-	AK311611|IMMP1L|196294|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)##BC023595|IMMP1L|196294|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)##AK310496|IMMP1L|196294|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)##AK057788|IMMP1L|196294|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)##NM_144981|IMMP1L|196294|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)##NM_181706|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24##AK123087|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24##AL833128|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24##AK289665|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24##BC036571|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24##BC044931|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24##BC063804|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24##AY247970|DCDC1|341019|doublecortin domain containing 1##NM_181807|DCDC1|341019|doublecortin domain containing 1##AK000505|ELP4|26610|elongation protein 4 homolog (S. cerevisiae)##NM_019040|ELP4|26610|elongation protein 4 homolog (S. cerevisiae)##AK304885|ELP4|26610|elongation protein 4 homolog (S. cerevisiae)##AL136677|ELP4|26610|elongation protein 4 homolog (S. cerevisiae)##DQ891468|ELP4|26610|elongation protein 4 homolog (S. cerevisiae)##DQ894651|ELP4|26610|elongation protein 4 homolog (S. cerevisiae)##BC012514|ELP4|26610|elongation protein 4 homolog (S. cerevisiae)##AM393460|ELP4|26610|elongation protein 4 homolog (S. cerevisiae)##AM393857|ELP4|26610|elongation protein 4 homolog (S. cerevisiae)##AK094249|PAX6|5080|paired box 6##M77844|PAX6|5080|paired box 6	1.18166	denovo_WM_21:-43:0.974
chr16	25122904	25123044	reg1000502.p2	8.065	+	TSC_hg19_v1_chr16_+_25078227 BC023651 AK093382	-44685	+	TSC_hg19_v1_chr16_-_25026691 AK027567 AK291691 BC080195 AK301500 NM_001006634 NM_018054	-96282	-	AJ306731 AJ306732 TSC_hg19_v1_chr16_-_25026604	-96362	-	TSC_hg19_v1_chr16_+_25123062 NM_001032391 NM_016309 AK223364 AF151826 BC001214	87	+	TSC_hg19_v1_chr16_+_25123102 AK025884 AK225271 AK291885 AK314409 BC014217 AF037601 CU674610 AL137283 CU676933	223	+	AB013456 AF067797 NM_001169 AK222975 AK222964	105326	+	BC023651|LOC283887|283887|uncharacterized LOC283887##AK093382|LOC283887|283887|uncharacterized LOC283887##AK027567|ARHGAP17|55114|Rho GTPase activating protein 17##AK291691|ARHGAP17|55114|Rho GTPase activating protein 17##BC080195|ARHGAP17|55114|Rho GTPase activating protein 17##AK301500|ARHGAP17|55114|Rho GTPase activating protein 17##NM_001006634|ARHGAP17|55114|Rho GTPase activating protein 17##NM_018054|ARHGAP17|55114|Rho GTPase activating protein 17##AJ306731|ARHGAP17|55114|Rho GTPase activating protein 17##AJ306732|ARHGAP17|55114|Rho GTPase activating protein 17##NM_001032391|LCMT1|51451|leucine carboxyl methyltransferase 1##NM_016309|LCMT1|51451|leucine carboxyl methyltransferase 1##AK223364|LCMT1|51451|leucine carboxyl methyltransferase 1##AF151826|LCMT1|51451|leucine carboxyl methyltransferase 1##BC001214|LCMT1|51451|leucine carboxyl methyltransferase 1##AK025884|LCMT1|51451|leucine carboxyl methyltransferase 1##AK225271|LCMT1|51451|leucine carboxyl methyltransferase 1##AK291885|LCMT1|51451|leucine carboxyl methyltransferase 1##AK314409|LCMT1|51451|leucine carboxyl methyltransferase 1##BC014217|LCMT1|51451|leucine carboxyl methyltransferase 1##AF037601|LCMT1|51451|leucine carboxyl methyltransferase 1##AL137283|LCMT1|51451|leucine carboxyl methyltransferase 1##AB013456|AQP8|343|aquaporin 8##AF067797|AQP8|343|aquaporin 8##NM_001169|AQP8|343|aquaporin 8##AK222975|AQP8|343|aquaporin 8##AK222964|AQP8|343|aquaporin 8	1.70863	denovo_WM_21:-13:0.778	denovo_WM_21:51:0.931
chr1	155197374	155197485	reg1000468.p1	8.064	+	BC030240 BC000349 AK297653 TSC_hg19_v1_chr1_-_155197234	-216	-	TSC_hg19_v1_chr1_+_155179028 BC035616 AX775989	-18403	+	AK311031 TSC_hg19_v1_chr1_-_155178970	-18452	-	K02920 AB527624 BC003356 D13286 AK301374 M19285 M22212 TSC_hg19_v1_chr1_-_155211041 AK300186 AK302000	13537	-	TSC_hg19_v1_chr1_-_155211049 AK298900 AK301879 NM_001171812 NM_000157	13629	-	BC062626 AK311242 TSC_hg19_v1_chr1_-_155214419 AK312502 BX648487 AK300829 AK291911 AK300876 NM_001005741 NM_001005742 NM_001171811	17054	-	BC030240|GBAP1|2630|glucosidase, beta, acid pseudogene 1##BC000349|GBAP1|2630|glucosidase, beta, acid pseudogene 1##AK297653|GBAP1|2630|glucosidase, beta, acid pseudogene 1##BC035616|MTX1|4580|metaxin 1##AX775989|MTX1|4580|metaxin 1##AK311031|THBS3|7059|thrombospondin 3##K02920|GBA|2629|glucosidase, beta, acid##BC003356|GBA|2629|glucosidase, beta, acid##D13286|GBA|2629|glucosidase, beta, acid##AK301374|GBA|2629|glucosidase, beta, acid##M19285|GBA|2629|glucosidase, beta, acid##AK300186|GBA|2629|glucosidase, beta, acid##AK302000|GBA|2629|glucosidase, beta, acid##AK298900|GBA|2629|glucosidase, beta, acid##AK301879|GBA|2629|glucosidase, beta, acid##NM_001171812|GBA|2629|glucosidase, beta, acid##NM_000157|GBA|2629|glucosidase, beta, acid##BC062626|GBAP1|2630|glucosidase, beta, acid pseudogene 1##AK311242|GBA|2629|glucosidase, beta, acid##AK312502|GBA|2629|glucosidase, beta, acid##BX648487|GBA|2629|glucosidase, beta, acid##AK300829|GBA|2629|glucosidase, beta, acid##AK291911|GBA|2629|glucosidase, beta, acid##AK300876|GBA|2629|glucosidase, beta, acid##NM_001005741|GBA|2629|glucosidase, beta, acid##NM_001005742|GBA|2629|glucosidase, beta, acid##NM_001171811|GBA|2629|glucosidase, beta, acid	0.091716	
chr16	1359046	1359150	reg1000145.p1	8.063	+	NM_012217 BC069143	-52822	+	NM_003294 BC074974 BC074975 BC029356	-68407	+	BC065923 AK308208 BC029356 NM_024164 BC074974	-78920	-	NM_194260 NM_194261	55	+	TSC_hg19_v1_chr16_+_1359631 NM_003345 NM_194259	530	+	AK291118 TSC_hg19_v1_chr16_+_1359639	544	+	NM_012217|TPSD1|23430|tryptase delta 1##BC069143|TPSD1|23430|tryptase delta 1##NM_003294|TPSAB1|7177|tryptase alpha/beta 1##BC074974|TPSAB1|7177|tryptase alpha/beta 1##BC074975|TPSAB1|7177|tryptase alpha/beta 1##BC029356|TPSB2|64499|tryptase beta 2 (gene/pseudogene)##BC065923|TPSB2|64499|tryptase beta 2 (gene/pseudogene)##AK308208|TPSB2|64499|tryptase beta 2 (gene/pseudogene)##BC029356|TPSB2|64499|tryptase beta 2 (gene/pseudogene)##NM_024164|TPSB2|64499|tryptase beta 2 (gene/pseudogene)##BC074974|TPSAB1|7177|tryptase alpha/beta 1##NM_194260|UBE2I|7329|ubiquitin-conjugating enzyme E2I##NM_194261|UBE2I|7329|ubiquitin-conjugating enzyme E2I##NM_003345|UBE2I|7329|ubiquitin-conjugating enzyme E2I##NM_194259|UBE2I|7329|ubiquitin-conjugating enzyme E2I##AK291118|UBE2I|7329|ubiquitin-conjugating enzyme E2I	0.091821	
chr19	42580129	42580248	reg1000367.p1	8.059	+	S40369 AJ249209 BC131717 NM_002088	-10250	-	TSC_hg19_v1_chr19_-_42498383 BC009282 BC009394 BC015566 BC013763 AK307921 AK316069 AK223569 AK293784 AK295078 NM_152296	-81816	-	AK295833 TSC_hg19_v1_chr19_-_42498254	-81951	-	TSC_hg19_v1_chr19_+_42580286 NM_022752	94	+	TSC_hg19_v1_chr19_+_42580336 AF447880 AK027895 BC001184	178	+	M36718 X13809 BT007438 AB590941 TSC_hg19_v1_chr19_-_42636564 BC006101 M36653 NM_001207025 NM_001207026 NM_001247994 NM_002698 X53468	56403	-	S40369|GRIK5|2901|glutamate receptor, ionotropic, kainate 5##AJ249209|GRIK5|2901|glutamate receptor, ionotropic, kainate 5##BC131717|GRIK5|2901|glutamate receptor, ionotropic, kainate 5##NM_002088|GRIK5|2901|glutamate receptor, ionotropic, kainate 5##BC009282|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##BC009394|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##BC015566|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##BC013763|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##AK307921|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##AK316069|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##AK223569|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##AK293784|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##AK295078|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##NM_152296|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##AK295833|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##NM_022752|ZNF574|64763|zinc finger protein 574##AF447880|ZNF574|64763|zinc finger protein 574##AK027895|ZNF574|64763|zinc finger protein 574##BC001184|ZNF574|64763|zinc finger protein 574##M36718|POU2F2|5452|POU class 2 homeobox 2##X13809|POU2F2|5452|POU class 2 homeobox 2##BT007438|POU2F2|5452|POU class 2 homeobox 2##BC006101|POU2F2|5452|POU class 2 homeobox 2##M36653|POU2F2|5452|POU class 2 homeobox 2##NM_001207025|POU2F2|5452|POU class 2 homeobox 2##NM_001207026|POU2F2|5452|POU class 2 homeobox 2##NM_001247994|POU2F2|5452|POU class 2 homeobox 2##NM_002698|POU2F2|5452|POU class 2 homeobox 2##X53468|POU2F2|5452|POU class 2 homeobox 2	0.618429	denovo_WM_21:22:0.510
chr12	57472716	57472900	reg1000248.p2	8.056	+	NM_001130963 NM_015257 TSC_hg19_v1_chr12_-_57472578	-231	-	TSC_hg19_v1_chr12_-_57472548 AL833310 AL833311	-259	-	TSC_hg19_v1_chr12_-_57472537 BC071597 BC117436 BC126300 BC144029 CR749406 AK294566	-268	-	TSC_hg19_v1_chr12_+_57482684 NM_005967	9871	+	TSC_hg19_v1_chr12_+_57482900 BC065931 AK314229 U48361	10094	+	TSC_hg19_v1_chr12_+_57482929 BC007756 AB463930 CU688106	10179	+	NM_001130963|TMEM194A|23306|transmembrane protein 194A##NM_015257|TMEM194A|23306|transmembrane protein 194A##AL833310|TMEM194A|23306|transmembrane protein 194A##AL833311|TMEM194A|23306|transmembrane protein 194A##BC071597|TMEM194A|23306|transmembrane protein 194A##BC117436|TMEM194A|23306|transmembrane protein 194A##BC126300|TMEM194A|23306|transmembrane protein 194A##BC144029|TMEM194A|23306|transmembrane protein 194A##CR749406|TMEM194A|23306|transmembrane protein 194A##AK294566|TMEM194A|23306|transmembrane protein 194A##NM_005967|NAB2|4665|NGFI-A binding protein 2 (EGR1 binding protein 2)##BC065931|NAB2|4665|NGFI-A binding protein 2 (EGR1 binding protein 2)##AK314229|NAB2|4665|NGFI-A binding protein 2 (EGR1 binding protein 2)##U48361|NAB2|4665|NGFI-A binding protein 2 (EGR1 binding protein 2)##BC007756|NAB2|4665|NGFI-A binding protein 2 (EGR1 binding protein 2)	0.755372	denovo_WM_21:41:0.755
chr1	207996069	207996207	reg1000525.p1	8.053	+	TSC_hg19_v1_chr1_+_207925420 BX537451 BX640613 BX649050 X59405 X59408 AK291227 AK296819 BC026273 BC030594 X59406 X59407 X59409 X59410 AK222822 BC007046 S51940 Y00651 EF076055 EF076056 EF076057 EF076058 M58050 D84105 AB462973 DQ890901 DQ894054 AF209712 AF209713 AF209714	-70655	+	TSC_hg19_v1_chr1_+_207925400 NM_002389 NM_153826 NM_172350 NM_172351 NM_172352 NM_172353 NM_172359 NM_172361	-70745	+	NM_175710 BC109190 BC109191	-177651	+	BX640941 TSC_hg19_v1_chr1_-_208059392	63185	-	TSC_hg19_v1_chr1_-_208084379 DQ891428 DQ894603	88245	-	BC039146 AK291529 TSC_hg19_v1_chr1_-_208084444 AK293030 AK294381 AF523361 S53910 S53911 AK300835 M81104 NM_001025109 NM_001773	88419	-	BX537451|CD46|4179|CD46 molecule, complement regulatory protein##BX640613|CD46|4179|CD46 molecule, complement regulatory protein##BX649050|CD46|4179|CD46 molecule, complement regulatory protein##X59405|CD46|4179|CD46 molecule, complement regulatory protein##X59408|CD46|4179|CD46 molecule, complement regulatory protein##AK291227|CD46|4179|CD46 molecule, complement regulatory protein##AK296819|CD46|4179|CD46 molecule, complement regulatory protein##BC026273|CD46|4179|CD46 molecule, complement regulatory protein##BC030594|CD46|4179|CD46 molecule, complement regulatory protein##X59406|CD46|4179|CD46 molecule, complement regulatory protein##X59407|CD46|4179|CD46 molecule, complement regulatory protein##X59409|CD46|4179|CD46 molecule, complement regulatory protein##X59410|CD46|4179|CD46 molecule, complement regulatory protein##AK222822|CD46|4179|CD46 molecule, complement regulatory protein##BC007046|CD46|4179|CD46 molecule, complement regulatory protein##S51940|CD46|4179|CD46 molecule, complement regulatory protein##Y00651|CD46|4179|CD46 molecule, complement regulatory protein##EF076055|CD46|4179|CD46 molecule, complement regulatory protein##EF076056|CD46|4179|CD46 molecule, complement regulatory protein##EF076057|CD46|4179|CD46 molecule, complement regulatory protein##EF076058|CD46|4179|CD46 molecule, complement regulatory protein##M58050|CD46|4179|CD46 molecule, complement regulatory protein##D84105|CD46|4179|CD46 molecule, complement regulatory protein##DQ890901|CD46|4179|CD46 molecule, complement regulatory protein##DQ894054|CD46|4179|CD46 molecule, complement regulatory protein##AF209712|CD46|4179|CD46 molecule, complement regulatory protein##AF209713|CD46|4179|CD46 molecule, complement regulatory protein##AF209714|CD46|4179|CD46 molecule, complement regulatory protein##NM_002389|CD46|4179|CD46 molecule, complement regulatory protein##NM_153826|CD46|4179|CD46 molecule, complement regulatory protein##NM_172350|CD46|4179|CD46 molecule, complement regulatory protein##NM_172351|CD46|4179|CD46 molecule, complement regulatory protein##NM_172352|CD46|4179|CD46 molecule, complement regulatory protein##NM_172353|CD46|4179|CD46 molecule, complement regulatory protein##NM_172359|CD46|4179|CD46 molecule, complement regulatory protein##NM_172361|CD46|4179|CD46 molecule, complement regulatory protein##NM_175710|CR1L|1379|complement component (3b/4b) receptor 1-like##BC109190|CR1L|1379|complement component (3b/4b) receptor 1-like##BC109191|CR1L|1379|complement component (3b/4b) receptor 1-like##DQ891428|CD34|947|CD34 molecule##DQ894603|CD34|947|CD34 molecule##BC039146|CD34|947|CD34 molecule##AK291529|CD34|947|CD34 molecule##AK293030|CD34|947|CD34 molecule##AK294381|CD34|947|CD34 molecule##AF523361|CD34|947|CD34 molecule##S53910|CD34|947|CD34 molecule##S53911|CD34|947|CD34 molecule##AK300835|CD34|947|CD34 molecule##M81104|CD34|947|CD34 molecule##NM_001025109|CD34|947|CD34 molecule##NM_001773|CD34|947|CD34 molecule	3.082006	denovo_WM_21:7:0.683	denovo_WM_21:-16:0.960	denovo_WM_21:23:0.685	denovo_WM_21:63:0.754
chr11	77705918	77706072	reg1000466.p1	8.047	+	BC009995 TSC_hg19_v1_chr11_-_77705714 AK290866 BC015664 NM_033547	-280	-	AL834171 EU446555 TSC_hg19_v1_chr11_-_77705710 CU679559 AK000455 BC018672	-311	-	TSC_hg19_v1_chr11_+_77532238 AF092136 AK024688 BC002752 NM_024684	-173792	+	BC001062 BC001929 NM_023930	28307	-	TSC_hg19_v1_chr11_+_77774906 AK311975 NM_003251 BC031989 EU447014	68918	+	CR533448 AB528753 AM392713 TSC_hg19_v1_chr11_-_77790909 AK022785 AF087659 AF369951 AK098173 AL050278 AF369952 AK023013 AF070652 BC007323	84879	-	BC009995|INTS4|92105|integrator complex subunit 4##AK290866|INTS4|92105|integrator complex subunit 4##BC015664|INTS4|92105|integrator complex subunit 4##NM_033547|INTS4|92105|integrator complex subunit 4##AL834171|INTS4|92105|integrator complex subunit 4##EU446555|INTS4|92105|integrator complex subunit 4##AK000455|INTS4|92105|integrator complex subunit 4##BC018672|INTS4|92105|integrator complex subunit 4##AF092136|C11orf67|28971|chromosome 11 open reading frame 67##AK024688|C11orf67|28971|chromosome 11 open reading frame 67##BC002752|C11orf67|28971|chromosome 11 open reading frame 67##NM_024684|C11orf67|28971|chromosome 11 open reading frame 67##BC001062|KCTD14|65987|potassium channel tetramerisation domain containing 14##BC001929|KCTD14|65987|potassium channel tetramerisation domain containing 14##NM_023930|KCTD14|65987|potassium channel tetramerisation domain containing 14##AK311975|THRSP|7069|thyroid hormone responsive##NM_003251|THRSP|7069|thyroid hormone responsive##BC031989|THRSP|7069|thyroid hormone responsive##EU447014|THRSP|7069|thyroid hormone responsive##CR533448|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AM392713|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AK022785|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AF087659|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AF369951|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AK098173|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AL050278|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AF369952|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AK023013|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AF070652|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##BC007323|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa	0.117491	
chr6	20401879	20402041	reg1000522.p2	8.046	+	BC045695 AK304748 BC150650 BC150652 TSC_hg19_v1_chr6_-_20212683 AK131269 NM_001080480 AK296857	-189288	-	TSC_hg19_v1_chr6_+_19838612 AF085889	-563277	+	TSC_hg19_v1_chr6_+_19837600 BC014941 NM_001546 U28368 U16153	-564325	+	TSC_hg19_v1_chr6_+_20402109 BC099908 NM_001949	143	+	CR749285 NM_001243076	2073	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	132763	+	BC045695|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##AK304748|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##BC150650|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##BC150652|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##AK131269|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##NM_001080480|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##AK296857|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##BC014941|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein##NM_001546|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein##U28368|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein##U16153|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein##BC099908|E2F3|1871|E2F transcription factor 3##NM_001949|E2F3|1871|E2F transcription factor 3##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1	1.612479	denovo_WM_21:-33:0.839	denovo_WM_21:-95:0.773
chr17	57408904	57409033	reg1000507.p2	8.036	+	NM_001165993 NM_001165994 NM_182569 AK094770 AY271346 BC034432 EU192951	-111070	+	AF349467 NM_018149 TSC_hg19_v1_chr17_+_57287384 AL834490 AK026858 BC031604	-121571	+	AK225380 TSC_hg19_v1_chr17_+_57233106 AK001891 AK225377 FJ161961 BC008669	-175848	+	TSC_hg19_v1_chr17_+_57409043 NM_001005404 BC132884 BC132886 AK097253 AB098736	50	+	AF461690 NM_001166301 NM_024612 TSC_hg19_v1_chr17_+_57642970 BC024187 AK299151 AK095681 AF260270 AK226048 AB384723 DQ890909 DQ894060	234019	+	TSC_hg19_v1_chr17_+_57697037 NM_004859	288077	+	NM_001165993|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##NM_001165994|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##NM_182569|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##AK094770|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##AY271346|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##BC034432|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##EU192951|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##AF349467|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_018149|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##AL834490|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK026858|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##BC031604|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK225380|PRR11|55771|proline rich 11##AK001891|PRR11|55771|proline rich 11##AK225377|PRR11|55771|proline rich 11##FJ161961|PRR11|55771|proline rich 11##BC008669|PRR11|55771|proline rich 11##NM_001005404|YPEL2|388403|yippee-like 2 (Drosophila)##BC132884|YPEL2|388403|yippee-like 2 (Drosophila)##BC132886|YPEL2|388403|yippee-like 2 (Drosophila)##AK097253|YPEL2|388403|yippee-like 2 (Drosophila)##AB098736|YPEL2|388403|yippee-like 2 (Drosophila)##AF461690|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##NM_001166301|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##NM_024612|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##BC024187|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AK299151|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AK095681|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AF260270|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AK226048|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##DQ890909|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##DQ894060|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##NM_004859|CLTC|1213|clathrin, heavy chain (Hc)	0.305324	denovo_WM_21:-55:0.305
chr1	12079351	12079535	reg1000421.p1	8.032	+	FJ618905 NM_021933	-145	+	TSC_hg19_v1_chr1_+_12040505 BC017061	-38931	+	TSC_hg19_v1_chr1_+_12040500 AK295890	-38954	+	AK022500 TSC_hg19_v1_chr1_+_12079535	91	+	TSC_hg19_v1_chr1_+_12079557 AK024020 BC008068	127	+	M83554 NM_001243 BC136400 BC171762 S75768	44101	+	FJ618905|MIIP|60672|migration and invasion inhibitory protein##NM_021933|MIIP|60672|migration and invasion inhibitory protein##BC017061|MFN2|9927|mitofusin 2##AK295890|MFN2|9927|mitofusin 2##AK022500|MIIP|60672|migration and invasion inhibitory protein##AK024020|MIIP|60672|migration and invasion inhibitory protein##BC008068|MIIP|60672|migration and invasion inhibitory protein##M83554|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_001243|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC136400|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC171762|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##S75768|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8	1.509392	denovo_WM_21:85:0.480	denovo_WM_21:-93:0.956
chr17	56595434	56595587	reg1000229.p2	8.010	+	AF264717 TSC_hg19_v1_chr17_-_56595226 BC035609 NM_004687	-267	-	TSC_hg19_v1_chr17_-_56591953 AK308877	-3568	-	BC115385 BC115386 BC033017 BC033020 NM_001080439 TSC_hg19_v1_chr17_-_56565791	-29761	-	CR457111 D89278 AK091065 AX746762 AB002110 AF073312 U88829 BC128255 BC128515 AB008753 AK315045 BC142968 TSC_hg19_v1_chr17_-_56606678	11097	-	AK314528 TSC_hg19_v1_chr17_-_56606712 NM_004574	11233	-	BC018055 TSC_hg19_v1_chr17_-_56609363	13852	-	AF264717|MTMR4|9110|myotubularin related protein 4##BC035609|MTMR4|9110|myotubularin related protein 4##NM_004687|MTMR4|9110|myotubularin related protein 4##AK308877|MTMR4|9110|myotubularin related protein 4##BC115385|HSF5|124535|heat shock transcription factor family member 5##BC115386|HSF5|124535|heat shock transcription factor family member 5##BC033017|HSF5|124535|heat shock transcription factor family member 5##BC033020|HSF5|124535|heat shock transcription factor family member 5##NM_001080439|HSF5|124535|heat shock transcription factor family member 5##CR457111|SEPT4|5414|septin 4##D89278|SEPT4|5414|septin 4##AK091065|SEPT4|5414|septin 4##AB002110|SEPT4|5414|septin 4##AF073312|SEPT4|5414|septin 4##U88829|SEPT4|5414|septin 4##BC128255|SEPT4|5414|septin 4##BC128515|SEPT4|5414|septin 4##AB008753|SEPT4|5414|septin 4##AK315045|SEPT4|5414|septin 4##BC142968|SEPT4|5414|septin 4##AK314528|SEPT4|5414|septin 4##NM_004574|SEPT4|5414|septin 4##BC018055|SEPT4|5414|septin 4	2.720763	denovo_WM_21:-15:0.904	denovo_WM_21:17:0.970	denovo_WM_21:-83:0.847
chr4	2263873	2263986	reg1000255.p1	8.008	+	TSC_hg19_v1_chr4_-_2263830 BC002713	-106	-	AB463859 BT019969 BT019970 AF040963 AF082740 NM_006454 TSC_hg19_v1_chr4_-_2263788 BC068060	-177	-	AK056134 AK293948 AK303673 TSC_hg19_v1_chr4_-_2243849 CR749640 NM_024511 BC003648	-20061	-	BC035793 AK294874 TSC_hg19_v1_chr4_-_2366542 AK316484 NM_001172659 NM_001172660	102637	-	TSC_hg19_v1_chr4_-_2420373 BC137309 BC137310 BC053664 AB046863 BC032605 NM_001172656 NM_001172657 NM_001172658 NM_020972 AK294710	156475	-	TSC_hg19_v1_chr4_+_2420681 AK126028 NM_001193282	156768	+	BC002713|MXD4|10608|MAX dimerization protein 4##BT019969|MXD4|10608|MAX dimerization protein 4##BT019970|MXD4|10608|MAX dimerization protein 4##AF040963|MXD4|10608|MAX dimerization protein 4##AF082740|MXD4|10608|MAX dimerization protein 4##NM_006454|MXD4|10608|MAX dimerization protein 4##BC068060|MXD4|10608|MAX dimerization protein 4##AK056134|HAUS3|79441|HAUS augmin-like complex, subunit 3##AK293948|HAUS3|79441|HAUS augmin-like complex, subunit 3##AK303673|POLN|353497|polymerase (DNA directed) nu##CR749640|HAUS3|79441|HAUS augmin-like complex, subunit 3##NM_024511|HAUS3|79441|HAUS augmin-like complex, subunit 3##BC003648|HAUS3|79441|HAUS augmin-like complex, subunit 3##BC035793|ZFYVE28|57732|zinc finger, FYVE domain containing 28##AK294874|ZFYVE28|57732|zinc finger, FYVE domain containing 28##AK316484|ZFYVE28|57732|zinc finger, FYVE domain containing 28##NM_001172659|ZFYVE28|57732|zinc finger, FYVE domain containing 28##NM_001172660|ZFYVE28|57732|zinc finger, FYVE domain containing 28##BC137309|ZFYVE28|57732|zinc finger, FYVE domain containing 28##BC137310|ZFYVE28|57732|zinc finger, FYVE domain containing 28##BC053664|ZFYVE28|57732|zinc finger, FYVE domain containing 28##AB046863|ZFYVE28|57732|zinc finger, FYVE domain containing 28##BC032605|ZFYVE28|57732|zinc finger, FYVE domain containing 28##NM_001172656|ZFYVE28|57732|zinc finger, FYVE domain containing 28##NM_001172657|ZFYVE28|57732|zinc finger, FYVE domain containing 28##NM_001172658|ZFYVE28|57732|zinc finger, FYVE domain containing 28##NM_020972|ZFYVE28|57732|zinc finger, FYVE domain containing 28##AK294710|ZFYVE28|57732|zinc finger, FYVE domain containing 28##NM_001193282|LOC402160|402160|uncharacterized LOC402160	1.61288	denovo_WM_21:-25:0.972	denovo_WM_21:27:0.641
chr19	11485615	11485793	reg1000442.p2	8.003	+	BC068071 AK092438 AX747546 NM_175871 BC119677	-331	+	AK094869 TSC_hg19_v1_chr19_+_11466173 BC009378	-19509	+	NM_001170635 NM_022737 TSC_hg19_v1_chr19_+_11466107 AK023117 AY304516 AK225482	-19589	+	M34986 AB527807 BC112153 BC143697 BC143698 BC143700 AK315097 M60459 BC019092 NM_000121	9245	-	AK074082 TSC_hg19_v1_chr19_-_11529991 BC064475 AK057147 AK293404 AK298281 BC101756 BC111958 BC143530 BC014426 NM_001035223 NM_001161616	44284	-	AK056363 BC141828 BC142637 AK294355 AK308072 NM_145045 BC036041 BC050355	60245	-	BC068071|SWSAP1|126074|SWIM-type zinc finger 7 associated protein 1##AK092438|SWSAP1|126074|SWIM-type zinc finger 7 associated protein 1##NM_175871|SWSAP1|126074|SWIM-type zinc finger 7 associated protein 1##BC119677|SWSAP1|126074|SWIM-type zinc finger 7 associated protein 1##AK094869|LPPR2|64748|lipid phosphate phosphatase-related protein type 2##BC009378|LPPR2|64748|lipid phosphate phosphatase-related protein type 2##NM_001170635|LPPR2|64748|lipid phosphate phosphatase-related protein type 2##NM_022737|LPPR2|64748|lipid phosphate phosphatase-related protein type 2##AK023117|LPPR2|64748|lipid phosphate phosphatase-related protein type 2##AY304516|LPPR2|64748|lipid phosphate phosphatase-related protein type 2##AK225482|LPPR2|64748|lipid phosphate phosphatase-related protein type 2##M34986|EPOR|2057|erythropoietin receptor##BC112153|EPOR|2057|erythropoietin receptor##BC143697|EPOR|2057|erythropoietin receptor##BC143698|EPOR|2057|erythropoietin receptor##BC143700|EPOR|2057|erythropoietin receptor##AK315097|EPOR|2057|erythropoietin receptor##M60459|EPOR|2057|erythropoietin receptor##BC019092|EPOR|2057|erythropoietin receptor##NM_000121|EPOR|2057|erythropoietin receptor##BC064475|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##AK057147|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##AK293404|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##AK298281|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##BC101756|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##BC111958|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##BC143530|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##BC014426|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##NM_001035223|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##NM_001161616|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##AK056363|CCDC151|115948|coiled-coil domain containing 151##BC141828|CCDC151|115948|coiled-coil domain containing 151##BC142637|CCDC151|115948|coiled-coil domain containing 151##AK294355|CCDC151|115948|coiled-coil domain containing 151##AK308072|CCDC151|115948|coiled-coil domain containing 151##NM_145045|CCDC151|115948|coiled-coil domain containing 151##BC036041|CCDC151|115948|coiled-coil domain containing 151##BC050355|CCDC151|115948|coiled-coil domain containing 151	0.505696	denovo_WM_21:-16:0.385
chr16	67217513	67217668	reg1000474.p1	7.993	+	TSC_hg19_v1_chr16_-_67217476 AK094787 AK096855 BC080183	-149	-	NM_003946 NM_001185057 AF043244 TSC_hg19_v1_chr16_+_67207847 AK314899 BC012798 AF064600 AF064599	-9761	+	NM_001185058 AK294145 AK092623 AX747633	-13163	+	TSC_hg19_v1_chr16_-_67217867 AL834156 NM_001040715	272	-	AK092858 AX747772 BC034287 AK292004 AK092906 AX747800 AK300915 AY255669 NM_178516	6462	-	TSC_hg19_v1_chr16_+_67226057 NM_001950 U15641	8457	+	AK094787|KIAA0895L|653319|KIAA0895-like##AK096855|KIAA0895L|653319|KIAA0895-like##BC080183|KIAA0895L|653319|KIAA0895-like##NM_003946|NOL3|8996|nucleolar protein 3 (apoptosis repressor with CARD domain)##NM_001185057|NOL3|8996|nucleolar protein 3 (apoptosis repressor with CARD domain)##AF043244|NOL3|8996|nucleolar protein 3 (apoptosis repressor with CARD domain)##AK314899|NOL3|8996|nucleolar protein 3 (apoptosis repressor with CARD domain)##BC012798|NOL3|8996|nucleolar protein 3 (apoptosis repressor with CARD domain)##AF064600|NOL3|8996|nucleolar protein 3 (apoptosis repressor with CARD domain)##AF064599|NOL3|8996|nucleolar protein 3 (apoptosis repressor with CARD domain)##NM_001185058|NOL3|8996|nucleolar protein 3 (apoptosis repressor with CARD domain)##AK294145|NOL3|8996|nucleolar protein 3 (apoptosis repressor with CARD domain)##AK092623|NOL3|8996|nucleolar protein 3 (apoptosis repressor with CARD domain)##AL834156|KIAA0895L|653319|KIAA0895-like##NM_001040715|KIAA0895L|653319|KIAA0895-like##AK092858|EXOC3L1|283849|exocyst complex component 3-like 1##BC034287|EXOC3L1|283849|exocyst complex component 3-like 1##AK292004|EXOC3L1|283849|exocyst complex component 3-like 1##AK092906|EXOC3L1|283849|exocyst complex component 3-like 1##AK300915|EXOC3L1|283849|exocyst complex component 3-like 1##NM_178516|EXOC3L1|283849|exocyst complex component 3-like 1##NM_001950|E2F4|1874|E2F transcription factor 4, p107/p130-binding##U15641|E2F4|1874|E2F transcription factor 4, p107/p130-binding	1.608585	denovo_WM_21:-7:0.781	denovo_WM_21:33:0.778
chr13	60738061	60738228	reg1000434.p1	7.979	+	TSC_hg19_v1_chr13_-_60738096 NM_001042517	-43	-	AB244756 AB244757 AB244758 AY818645 AK298509 AY750055 TSC_hg19_v1_chr13_-_60738063 AK316474 AK092024 AX747319 BX649186	-163	-	BC048963 BC068504 AL137718 AK307652 BC034952 NM_030932	-150824	-	BX537910 NM_001146071 NM_030794	232446	+	EU643838 NM_001146070 TSC_hg19_v1_chr13_+_60971524	233335	+	AB527405 AK314607 BC027907 AF169693 AK094680 TSC_hg19_v1_chr13_-_61989297	1251109	-	NM_001042517|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AB244756|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AB244757|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AB244758|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AY818645|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK298509|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AY750055|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK316474|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK092024|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##BX649186|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##BC048963|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##BC068504|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AL137718|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK307652|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##BC034952|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##NM_030932|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##BX537910|TDRD3|81550|tudor domain containing 3##NM_001146071|TDRD3|81550|tudor domain containing 3##NM_030794|TDRD3|81550|tudor domain containing 3##EU643838|TDRD3|81550|tudor domain containing 3##NM_001146070|TDRD3|81550|tudor domain containing 3##AK314607|PCDH20|64881|protocadherin 20##BC027907|PCDH20|64881|protocadherin 20##AF169693|PCDH20|64881|protocadherin 20##AK094680|PCDH20|64881|protocadherin 20	0.014294	
chr1	150669623	150669749	reg1000084.p1	7.976	+	AJ296153 TSC_hg19_v1_chr1_-_150669631 AK300635 AK315594 NM_018178	-101	-	TSC_hg19_v1_chr1_-_150602089 NM_004436 NM_207042 NM_207043 NM_207044 NM_207168	-67593	-	TSC_hg19_v1_chr1_-_150602054 AF157509 AF157510 AF067170 CR749580 BC068544 X99906 AK057673 AK001981	-67627	-	AK098633 BC033014 AK097390 BC047406 AL136755 AY626344 NM_001199829 NM_032132	23656	-	TSC_hg19_v1_chr1_-_150738233 BC002642	68546	-	TSC_hg19_v1_chr1_-_150738255 AK301472 AK314482	68582	-	AJ296153|GOLPH3L|55204|golgi phosphoprotein 3-like##AK300635|GOLPH3L|55204|golgi phosphoprotein 3-like##AK315594|GOLPH3L|55204|golgi phosphoprotein 3-like##NM_018178|GOLPH3L|55204|golgi phosphoprotein 3-like##NM_004436|ENSA|2029|endosulfine alpha##NM_207042|ENSA|2029|endosulfine alpha##NM_207043|ENSA|2029|endosulfine alpha##NM_207044|ENSA|2029|endosulfine alpha##NM_207168|ENSA|2029|endosulfine alpha##AF157509|ENSA|2029|endosulfine alpha##AF157510|ENSA|2029|endosulfine alpha##AF067170|ENSA|2029|endosulfine alpha##CR749580|ENSA|2029|endosulfine alpha##BC068544|ENSA|2029|endosulfine alpha##X99906|ENSA|2029|endosulfine alpha##AK057673|ENSA|2029|endosulfine alpha##AK001981|ENSA|2029|endosulfine alpha##AK098633|HORMAD1|84072|HORMA domain containing 1##BC033014|HORMAD1|84072|HORMA domain containing 1##AK097390|HORMAD1|84072|HORMA domain containing 1##BC047406|HORMAD1|84072|HORMA domain containing 1##AL136755|HORMAD1|84072|HORMA domain containing 1##AY626344|HORMAD1|84072|HORMA domain containing 1##NM_001199829|HORMAD1|84072|HORMA domain containing 1##NM_032132|HORMAD1|84072|HORMA domain containing 1##BC002642|CTSS|1520|cathepsin S##AK301472|CTSS|1520|cathepsin S##AK314482|CTSS|1520|cathepsin S	1.33772	denovo_WM_21:0:0.746	denovo_WM_21:30:0.592
chr7	76178362	76178524	reg1000662.p1	7.971	+	NM_030570 NM_182684 AK290096 AY233462 BC004304 AK056760 CU678662	-38587	+	AY225124 AY225125 CU679151 DQ893264 DQ896593 NM_001102596	-68617	+	NM_001102594 NM_001102595 NM_020892 BC018555 DQ010329 AK293226 TSC_hg19_v1_chr7_+_76091025 AK023924 AB040961 BC008856 BC026059 BC093079	-87416	+	TSC_hg19_v1_chr7_+_76178647 BC090058	189	+	TSC_hg19_v1_chr7_+_76178675 BC078169	232	+	TSC_hg19_v1_chr7_-_76256148 BC017101	77760	-	NM_030570|UPK3B|80761|uroplakin 3B##NM_182684|UPK3B|80761|uroplakin 3B##AK290096|UPK3B|80761|uroplakin 3B##AY233462|UPK3B|80761|uroplakin 3B##BC004304|UPK3B|80761|uroplakin 3B##AK056760|UPK3B|80761|uroplakin 3B##AY225124|DTX2|113878|deltex homolog 2 (Drosophila)##AY225125|DTX2|113878|deltex homolog 2 (Drosophila)##DQ893264|DTX2|113878|deltex homolog 2 (Drosophila)##DQ896593|DTX2|113878|deltex homolog 2 (Drosophila)##NM_001102596|DTX2|113878|deltex homolog 2 (Drosophila)##NM_001102594|DTX2|113878|deltex homolog 2 (Drosophila)##NM_001102595|DTX2|113878|deltex homolog 2 (Drosophila)##NM_020892|DTX2|113878|deltex homolog 2 (Drosophila)##BC018555|DTX2|113878|deltex homolog 2 (Drosophila)##DQ010329|DTX2|113878|deltex homolog 2 (Drosophila)##AK293226|DTX2|113878|deltex homolog 2 (Drosophila)##AK023924|DTX2|113878|deltex homolog 2 (Drosophila)##AB040961|DTX2|113878|deltex homolog 2 (Drosophila)##BC008856|DTX2|113878|deltex homolog 2 (Drosophila)##BC026059|DTX2|113878|deltex homolog 2 (Drosophila)##BC093079|DTX2|113878|deltex homolog 2 (Drosophila)##BC090058|LOC100133091|100133091|uncharacterized LOC100133091##BC078169|LOC100133091|100133091|uncharacterized LOC100133091##BC017101|POMZP3|22932|POM121 and ZP3 fusion	0.0	
chr19	18133086	18133216	reg1000533.p1	7.970	+	TSC_hg19_v1_chr19_+_18118978 AF193051 NM_015683 AK000689 AK128588 BC022516 AK314657 AB529119	-14133	+	TSC_hg19_v1_chr19_+_18111932 NM_001025604 AK127940	-21201	+	NM_002248 U69883	-71041	+	EU832463 EU832545 BC137404 BC137406 NM_005535 NM_153701 U03187 BC029121 TSC_hg19_v1_chr19_-_18197721 AK225919 AK290423	64581	-	TSC_hg19_v1_chr19_+_18208608 AB527184 NM_015016 AB011133	75458	+	BC063240 TSC_hg19_v1_chr19_+_18263972	130830	+	AF193051|ARRDC2|27106|arrestin domain containing 2##NM_015683|ARRDC2|27106|arrestin domain containing 2##AK000689|ARRDC2|27106|arrestin domain containing 2##AK128588|ARRDC2|27106|arrestin domain containing 2##BC022516|ARRDC2|27106|arrestin domain containing 2##AK314657|ARRDC2|27106|arrestin domain containing 2##NM_001025604|ARRDC2|27106|arrestin domain containing 2##AK127940|ARRDC2|27106|arrestin domain containing 2##NM_002248|KCNN1|3780|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1##U69883|KCNN1|3780|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1##EU832463|IL12RB1|3594|interleukin 12 receptor, beta 1##EU832545|IL12RB1|3594|interleukin 12 receptor, beta 1##BC137404|IL12RB1|3594|interleukin 12 receptor, beta 1##BC137406|IL12RB1|3594|interleukin 12 receptor, beta 1##NM_005535|IL12RB1|3594|interleukin 12 receptor, beta 1##NM_153701|IL12RB1|3594|interleukin 12 receptor, beta 1##U03187|IL12RB1|3594|interleukin 12 receptor, beta 1##BC029121|IL12RB1|3594|interleukin 12 receptor, beta 1##AK225919|IL12RB1|3594|interleukin 12 receptor, beta 1##AK290423|IL12RB1|3594|interleukin 12 receptor, beta 1##NM_015016|MAST3|23031|microtubule associated serine/threonine kinase 3##AB011133|MAST3|23031|microtubule associated serine/threonine kinase 3	0.48993	denovo_WM_21:-43:0.490
chr9	139844573	139844685	reg1000315.p1	7.963	+	NM_000606 M17999 X06465 BC113624 BC113626 M17263 HQ258743 AB590759	-4896	+	BC014130 TSC_hg19_v1_chr9_-_139839140 BC035355 BC031100 NM_018998	-5493	-	BC014297 TSC_hg19_v1_chr9_-_139839082 AK315738	-5545	-	BC041168 NM_178536 AY301272	2144	+	TSC_hg19_v1_chr9_+_139871955 NM_000954 AK075333 M61900 AK312817	27332	+	TSC_hg19_v1_chr9_+_139872014 BC005939 AB464076 AY026356 BT019921 BT019922	27393	+	NM_000606|C8G|733|complement component 8, gamma polypeptide##M17999|C8G|733|complement component 8, gamma polypeptide##X06465|C8G|733|complement component 8, gamma polypeptide##BC113624|C8G|733|complement component 8, gamma polypeptide##BC113626|C8G|733|complement component 8, gamma polypeptide##M17263|C8G|733|complement component 8, gamma polypeptide##HQ258743|C8G|733|complement component 8, gamma polypeptide##BC014130|FBXW5|54461|F-box and WD repeat domain containing 5##BC035355|FBXW5|54461|F-box and WD repeat domain containing 5##BC031100|FBXW5|54461|F-box and WD repeat domain containing 5##NM_018998|FBXW5|54461|F-box and WD repeat domain containing 5##BC014297|FBXW5|54461|F-box and WD repeat domain containing 5##AK315738|FBXW5|54461|F-box and WD repeat domain containing 5##BC041168|LCN12|286256|lipocalin 12##NM_178536|LCN12|286256|lipocalin 12##AY301272|LCN12|286256|lipocalin 12##NM_000954|PTGDS|5730|prostaglandin D2 synthase 21kDa (brain)##AK075333|PTGDS|5730|prostaglandin D2 synthase 21kDa (brain)##M61900|PTGDS|5730|prostaglandin D2 synthase 21kDa (brain)##AK312817|PTGDS|5730|prostaglandin D2 synthase 21kDa (brain)##BC005939|PTGDS|5730|prostaglandin D2 synthase 21kDa (brain)##AY026356|PTGDS|5730|prostaglandin D2 synthase 21kDa (brain)##BT019921|PTGDS|5730|prostaglandin D2 synthase 21kDa (brain)##BT019922|PTGDS|5730|prostaglandin D2 synthase 21kDa (brain)	0.035955	
chr11	119205080	119205211	reg1000457.p1	7.960	+	AB527309 EU832794 GQ129330 TSC_hg19_v1_chr11_-_119187841 BC006329 M28882 M29277 AF089868 BC056418 AK128335 AK291571 AK312430 NM_006500 AB209925	-17304	-	TSC_hg19_v1_chr11_+_119077024 BC132733 BC136463	-128105	+	TSC_hg19_v1_chr11_+_119076992 X57110 NM_005188	-128162	+	TSC_hg19_v1_chr11_+_119205234 BX648447 AK122642 BX647424 NM_032015	86	+	AL110261 AB590791 TSC_hg19_v1_chr11_-_119211170	5957	-	TSC_hg19_v1_chr11_-_119211575 AF329841 AY358383 BC029485	6437	-	EU832794|MCAM|4162|melanoma cell adhesion molecule##GQ129330|MCAM|4162|melanoma cell adhesion molecule##M28882|MCAM|4162|melanoma cell adhesion molecule##M29277|MCAM|4162|melanoma cell adhesion molecule##AF089868|MCAM|4162|melanoma cell adhesion molecule##BC056418|MCAM|4162|melanoma cell adhesion molecule##AK128335|MCAM|4162|melanoma cell adhesion molecule##AK291571|MCAM|4162|melanoma cell adhesion molecule##AK312430|MCAM|4162|melanoma cell adhesion molecule##NM_006500|MCAM|4162|melanoma cell adhesion molecule##AB209925|MCAM|4162|melanoma cell adhesion molecule##BC132733|CBL|867|Cas-Br-M (murine) ecotropic retroviral transforming sequence##BC136463|CBL|867|Cas-Br-M (murine) ecotropic retroviral transforming sequence##X57110|CBL|867|Cas-Br-M (murine) ecotropic retroviral transforming sequence##NM_005188|CBL|867|Cas-Br-M (murine) ecotropic retroviral transforming sequence##BX648447|RNF26|79102|ring finger protein 26##AK122642|RNF26|79102|ring finger protein 26##BX647424|RNF26|79102|ring finger protein 26##NM_032015|RNF26|79102|ring finger protein 26##AL110261|MFRP|83552|membrane frizzled-related protein##AF329841|C1QTNF5|114902|C1q and tumor necrosis factor related protein 5##AY358383|C1QTNF5|114902|C1q and tumor necrosis factor related protein 5##BC029485|MFRP|83552|membrane frizzled-related protein	1.407666	denovo_WM_21:-1:0.542	denovo_WM_21:34:0.755
chr1	23694860	23694997	reg1000456.p1	7.944	+	CU691148 EU446536 TSC_hg19_v1_chr1_-_23694804 AK308173 BC056400 AK092364 AX747503 AL834485 NM_030634	-230	-	TSC_hg19_v1_chr1_-_23670794 BX647784 AF000364 AK297405 AK311519 AK297382 BC110389 AK300029 BX640912 BC001449 AK313142 NM_001102397 NM_001102398 NM_001102399 NM_005826	-24110	-	BC007720 NM_000864	-173707	-	TSC_hg19_v1_chr1_+_23695456 BC054115 BC068594 AK074989	567	+	TSC_hg19_v1_chr1_-_23696358 NM_001077195	1384	-	AB587445 EU446905 TSC_hg19_v1_chr1_-_23751239 BC041613 AY540752 AK027024 NM_003196 AK290272 AK300707 AK310039	56280	-	EU446536|ZNF436|80818|zinc finger protein 436##AK308173|ZNF436|80818|zinc finger protein 436##BC056400|ZNF436|80818|zinc finger protein 436##AK092364|ZNF436|80818|zinc finger protein 436##AL834485|ZNF436|80818|zinc finger protein 436##NM_030634|ZNF436|80818|zinc finger protein 436##BX647784|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##AF000364|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##AK297405|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##AK311519|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##AK297382|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##BC110389|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##AK300029|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##BX640912|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##BC001449|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##AK313142|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##NM_001102397|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##NM_001102398|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##NM_001102399|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##NM_005826|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##BC007720|HTR1D|3352|5-hydroxytryptamine (serotonin) receptor 1D##NM_000864|HTR1D|3352|5-hydroxytryptamine (serotonin) receptor 1D##BC054115|C1orf213|148898|chromosome 1 open reading frame 213##BC068594|C1orf213|148898|chromosome 1 open reading frame 213##AK074989|C1orf213|148898|chromosome 1 open reading frame 213##NM_001077195|ZNF436|80818|zinc finger protein 436##EU446905|TCEA3|6920|transcription elongation factor A (SII), 3##BC041613|TCEA3|6920|transcription elongation factor A (SII), 3##AY540752|TCEA3|6920|transcription elongation factor A (SII), 3##AK027024|TCEA3|6920|transcription elongation factor A (SII), 3##NM_003196|TCEA3|6920|transcription elongation factor A (SII), 3##AK290272|TCEA3|6920|transcription elongation factor A (SII), 3##AK300707|TCEA3|6920|transcription elongation factor A (SII), 3##AK310039|TCEA3|6920|transcription elongation factor A (SII), 3	1.295151	denovo_WM_21:0:0.330	denovo_WM_21:-33:0.966
chr15	69113247	69113387	reg1000485.p2	7.933	+	TSC_hg19_v1_chr15_-_69113264 NM_006305	-57	-	TSC_hg19_v1_chr15_-_69113235 BC007200 BC000608 AF025684 AK312703	-90	-	AB463390 AY349171 BC106719 BC125143 BT007436 DQ893294 DQ896729 U60823 TSC_hg19_v1_chr15_-_69113208 U73477 X75090 AK223280	-168	-	NM_001184780 NM_145658 AY358983 AF325189 AF325190 BC017998 AF275321 BC125097 BC125098 CU676134	109598	+	NM_001184779 NM_024505 AF353088 AF353089 AK314689 AK074071	193734	+	TSC_hg19_v1_chr15_+_69452935 BC142975 AY635582 NM_015554 AK098595 BC033828 BC019011	339581	+	NM_006305|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##BC007200|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##BC000608|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##AF025684|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##AK312703|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##AY349171|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##BC106719|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##BC125143|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##BT007436|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##DQ893294|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##DQ896729|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##U60823|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##U73477|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##X75090|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##AK223280|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##NM_001184780|NOX5|79400|NADPH oxidase, EF-hand calcium binding domain 5##NM_145658|SPESP1|246777|sperm equatorial segment protein 1##AY358983|SPESP1|246777|sperm equatorial segment protein 1##AF325189|NOX5|79400|NADPH oxidase, EF-hand calcium binding domain 5##AF325190|NOX5|79400|NADPH oxidase, EF-hand calcium binding domain 5##BC017998|SPESP1|246777|sperm equatorial segment protein 1##AF275321|SPESP1|246777|sperm equatorial segment protein 1##BC125097|NOX5|79400|NADPH oxidase, EF-hand calcium binding domain 5##BC125098|NOX5|79400|NADPH oxidase, EF-hand calcium binding domain 5##NM_001184779|NOX5|79400|NADPH oxidase, EF-hand calcium binding domain 5##NM_024505|NOX5|79400|NADPH oxidase, EF-hand calcium binding domain 5##AF353088|NOX5|79400|NADPH oxidase, EF-hand calcium binding domain 5##AF353089|NOX5|79400|NADPH oxidase, EF-hand calcium binding domain 5##AK314689|NOX5|79400|NADPH oxidase, EF-hand calcium binding domain 5##AK074071|NOX5|79400|NADPH oxidase, EF-hand calcium binding domain 5##AY635582|GLCE|26035|glucuronic acid epimerase##NM_015554|GLCE|26035|glucuronic acid epimerase	2.0601	denovo_WM_21:11:0.811	denovo_WM_21:-19:0.593	denovo_WM_21:43:0.656
chr9	96928379	96928512	reg1000451.p2	7.924	+	TSC_hg19_v1_chr9_+_96846806 AK124912	-81631	+	NM_001253829 NM_152422 TSC_hg19_v1_chr9_+_96846745 BC031279 AK310403 AK289692	-81694	+	TSC_hg19_v1_chr9_+_96793094 AY171233 NM_177995 BC067120 NM_001253830 BC051654	-135330	+	TSC_hg19_v1_chr9_+_97021599 NM_194320 AK289742 AK093956	93145	+	HQ258506 BC130390 BC143798 NM_017561	162469	-	TSC_hg19_v1_chr9_+_97136850 NM_032558	208388	+	AK124912|PTPDC1|138639|protein tyrosine phosphatase domain containing 1##NM_001253829|PTPDC1|138639|protein tyrosine phosphatase domain containing 1##NM_152422|PTPDC1|138639|protein tyrosine phosphatase domain containing 1##BC031279|PTPDC1|138639|protein tyrosine phosphatase domain containing 1##AK310403|PTPDC1|138639|protein tyrosine phosphatase domain containing 1##AK289692|PTPDC1|138639|protein tyrosine phosphatase domain containing 1##AY171233|PTPDC1|138639|protein tyrosine phosphatase domain containing 1##NM_177995|PTPDC1|138639|protein tyrosine phosphatase domain containing 1##BC067120|PTPDC1|138639|protein tyrosine phosphatase domain containing 1##NM_001253830|PTPDC1|138639|protein tyrosine phosphatase domain containing 1##BC051654|PTPDC1|138639|protein tyrosine phosphatase domain containing 1##NM_194320|ZNF169|169841|zinc finger protein 169##AK289742|ZNF169|169841|zinc finger protein 169##AK093956|ZNF169|169841|zinc finger protein 169##HQ258506|FAM22F|54754|family with sequence similarity 22, member F##BC130390|FAM22F|54754|family with sequence similarity 22, member F##BC143798|FAM22F|54754|family with sequence similarity 22, member F##NM_017561|FAM22F|54754|family with sequence similarity 22, member F##NM_032558|HIATL1|84641|hippocampus abundant transcript-like 1	0.0	
chr1	54665696	54665831	reg1000475.p1	7.918	+	TSC_hg19_v1_chr1_-_54665704 BC012781 BC038388 AK090456 BC071735 BC064419 AK122760 NM_001031672	-56	-	NM_201546	-46321	-	AK096488 AK056674 NM_153035 BC035374	-146464	+	AK024572 NM_016491 TSC_hg19_v1_chr1_+_54665839	79	+	TSC_hg19_v1_chr1_+_54665855 AK026171	90	+	TSC_hg19_v1_chr1_+_54665866 AF151069 AF325707 AY421759 BC000041 CU674006	127	+	BC012781|CYB5RL|606495|cytochrome b5 reductase-like##BC038388|CYB5RL|606495|cytochrome b5 reductase-like##AK090456|CYB5RL|606495|cytochrome b5 reductase-like##BC071735|CYB5RL|606495|cytochrome b5 reductase-like##BC064419|CYB5RL|606495|cytochrome b5 reductase-like##NM_001031672|CYB5RL|606495|cytochrome b5 reductase-like##NM_201546|CDCP2|200008|CUB domain containing protein 2##AK096488|TCEANC2|127428|transcription elongation factor A (SII) N-terminal and central domain containing 2##AK056674|TCEANC2|127428|transcription elongation factor A (SII) N-terminal and central domain containing 2##NM_153035|TCEANC2|127428|transcription elongation factor A (SII) N-terminal and central domain containing 2##BC035374|TCEANC2|127428|transcription elongation factor A (SII) N-terminal and central domain containing 2##AK024572|MRPL37|51253|mitochondrial ribosomal protein L37##NM_016491|MRPL37|51253|mitochondrial ribosomal protein L37##AK026171|MRPL37|51253|mitochondrial ribosomal protein L37##AF151069|MRPL37|51253|mitochondrial ribosomal protein L37##AF325707|MRPL37|51253|mitochondrial ribosomal protein L37##AY421759|MRPL37|51253|mitochondrial ribosomal protein L37##BC000041|MRPL37|51253|mitochondrial ribosomal protein L37	0.926542	denovo_WM_21:30:0.927
chr15	75744385	75744570	reg1000156.p2	7.913	+	TSC_hg19_v1_chr15_-_75744032 AK096477 NM_001145358	-420	-	BC137098 BC137099 AF418569 AK027559 NM_015477 BC066364 TSC_hg19_v1_chr15_-_75744028 BX649162	-575	-	AK225145 TSC_hg19_v1_chr15_-_75660949 AK294892 AK301170 AK311065	-83520	-	AL832463 NM_001145357	3646	-	CU687108 TSC_hg19_v1_chr15_-_75871151 BT007405 CU679831 DQ890986 BC010863	126642	-	TSC_hg19_v1_chr15_-_75871604 M83738 NM_002833	127089	-	AK096477|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##NM_001145358|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BC137098|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BC137099|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##AF418569|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##AK027559|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##NM_015477|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BC066364|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BX649162|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##AK225145|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AK294892|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AK301170|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AK311065|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AL832463|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##NM_001145357|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BT007405|PTPN9|5780|protein tyrosine phosphatase, non-receptor type 9##DQ890986|PTPN9|5780|protein tyrosine phosphatase, non-receptor type 9##BC010863|PTPN9|5780|protein tyrosine phosphatase, non-receptor type 9##M83738|PTPN9|5780|protein tyrosine phosphatase, non-receptor type 9##NM_002833|PTPN9|5780|protein tyrosine phosphatase, non-receptor type 9	0.268868	denovo_WM_21:93:0.269
chr9	127905861	127906007	reg1000472.p1	7.905	+	AB590983 TSC_hg19_v1_chr9_-_127905808 BC104030 BC104031 BC104032 AK098024 AK093983 AX748393 NM_001144877 NM_173690	-143	-	TSC_hg19_v1_chr9_-_127703357 BC032853 U51587 NM_002077	-202595	-	TSC_hg19_v1_chr9_-_127703273 AK302445	-202673	-	AB385530 AF035158 BT019708 X92972 TSC_hg19_v1_chr9_-_127952023	46075	-	AK295752 TSC_hg19_v1_chr9_-_127952069 AK312332 BC006990 AK316527 AK295190 AK299087 NM_001123355 NM_001123369 NM_002721	46193	-	TSC_hg19_v1_chr9_+_127962821 BC065725 NM_001174152 NM_001174153 AL832249 BC047023 Z97074	56891	+	BC104030|SCAI|286205|suppressor of cancer cell invasion##BC104031|SCAI|286205|suppressor of cancer cell invasion##BC104032|SCAI|286205|suppressor of cancer cell invasion##AK098024|SCAI|286205|suppressor of cancer cell invasion##AK093983|SCAI|286205|suppressor of cancer cell invasion##NM_001144877|SCAI|286205|suppressor of cancer cell invasion##NM_173690|SCAI|286205|suppressor of cancer cell invasion##BC032853|GOLGA1|2800|golgin A1##U51587|GOLGA1|2800|golgin A1##NM_002077|GOLGA1|2800|golgin A1##AK302445|GOLGA1|2800|golgin A1##AF035158|PPP6C|5537|protein phosphatase 6, catalytic subunit##BT019708|PPP6C|5537|protein phosphatase 6, catalytic subunit##X92972|PPP6C|5537|protein phosphatase 6, catalytic subunit##AK295752|PPP6C|5537|protein phosphatase 6, catalytic subunit##AK312332|PPP6C|5537|protein phosphatase 6, catalytic subunit##BC006990|PPP6C|5537|protein phosphatase 6, catalytic subunit##AK316527|PPP6C|5537|protein phosphatase 6, catalytic subunit##AK295190|PPP6C|5537|protein phosphatase 6, catalytic subunit##AK299087|PPP6C|5537|protein phosphatase 6, catalytic subunit##NM_001123355|PPP6C|5537|protein phosphatase 6, catalytic subunit##NM_001123369|PPP6C|5537|protein phosphatase 6, catalytic subunit##NM_002721|PPP6C|5537|protein phosphatase 6, catalytic subunit##BC065725|RABEPK|10244|Rab9 effector protein with kelch motifs##NM_001174152|RABEPK|10244|Rab9 effector protein with kelch motifs##NM_001174153|RABEPK|10244|Rab9 effector protein with kelch motifs##AL832249|RABEPK|10244|Rab9 effector protein with kelch motifs##BC047023|RABEPK|10244|Rab9 effector protein with kelch motifs##Z97074|RABEPK|10244|Rab9 effector protein with kelch motifs	0.995706	denovo_WM_21:-53:0.972
chr2	62932678	62932790	reg1000219.p2	7.904	+	AK292545 NM_001142615	-31749	+	BC047439 AK091902 AX747245 NM_198276	-199195	-	TSC_hg19_v1_chr2_+_62423260 AB049584 BC047933 NM_006577 AF092051 AF288208	-509468	+	TSC_hg19_v1_chr2_+_62932868 AK310828 AK000828 NM_001142616 NM_015252 AL833968 BC067215	232	+	BC029477 NM_001142614	1296	+	NM_001199770	344457	+	AK292545|EHBP1|23301|EH domain binding protein 1##NM_001142615|EHBP1|23301|EH domain binding protein 1##BC047439|TMEM17|200728|transmembrane protein 17##AK091902|TMEM17|200728|transmembrane protein 17##NM_198276|TMEM17|200728|transmembrane protein 17##AB049584|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##BC047933|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##NM_006577|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AF092051|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AF288208|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AK310828|EHBP1|23301|EH domain binding protein 1##AK000828|EHBP1|23301|EH domain binding protein 1##NM_001142616|EHBP1|23301|EH domain binding protein 1##NM_015252|EHBP1|23301|EH domain binding protein 1##AL833968|EHBP1|23301|EH domain binding protein 1##BC067215|EHBP1|23301|EH domain binding protein 1##BC029477|EHBP1|23301|EH domain binding protein 1##NM_001142614|EHBP1|23301|EH domain binding protein 1##NM_001199770|OTX1|5013|orthodenticle homeobox 1	0.205064	denovo_WM_21:71:0.205
chr7	63774238	63774365	reg1000620.p1	7.901	+	NM_001170905	-1116	+	BC033523 NM_153363	-85450	+	NM_001159524	-106721	+	TSC_hg19_v1_chr7_+_63774393 BC031335 AK301806	91	+	AB529206 EU832109 EU832203 TSC_hg19_v1_chr7_-_64023424 AK131240	249077	-	TSC_hg19_v1_chr7_-_64023450 AK094476	249146	-	NM_001170905|ZNF736|728927|zinc finger protein 736##BC033523|ZNF679|168417|zinc finger protein 679##NM_153363|ZNF679|168417|zinc finger protein 679##NM_001159524|ZNF735|730291|zinc finger protein 735##BC031335|ZNF736|728927|zinc finger protein 736##AK301806|ZNF736|728927|zinc finger protein 736##EU832109|ZNF680|340252|zinc finger protein 680##EU832203|ZNF680|340252|zinc finger protein 680##AK131240|ZNF680|340252|zinc finger protein 680	0.918341	denovo_WM_21:-16:0.880
chr5	148737382	148737520	reg1000555.p2	7.895	+	TSC_hg19_v1_chr5_+_148731227 AK091237 AX746868	-6170	+	NM_152407 TSC_hg19_v1_chr5_+_148725061 BC036678 AK294005 BC070090 AL832325 AK074293 CU687032	-12413	+	TSC_hg19_v1_chr5_+_148651443 AK095980 AK074185 BC125093 BC125094	-85989	+	NM_024028 TSC_hg19_v1_chr5_+_148737608 AK075414	139	+	TSC_hg19_v1_chr5_+_148737613 AF451985 BC000014	172	+	AB590699 CR457192 BC113925 BC113946 AF152098 AF184969 AF218727 AY358931 AF110385 AF212311 NM_014443 TSC_hg19_v1_chr5_-_148758856	21371	-	AK091237|GRPEL2|134266|GrpE-like 2, mitochondrial (E. coli)##NM_152407|GRPEL2|134266|GrpE-like 2, mitochondrial (E. coli)##BC036678|GRPEL2|134266|GrpE-like 2, mitochondrial (E. coli)##AK294005|GRPEL2|134266|GrpE-like 2, mitochondrial (E. coli)##BC070090|GRPEL2|134266|GrpE-like 2, mitochondrial (E. coli)##AL832325|GRPEL2|134266|GrpE-like 2, mitochondrial (E. coli)##AK074293|GRPEL2|134266|GrpE-like 2, mitochondrial (E. coli)##AK095980|AFAP1L1|134265|actin filament associated protein 1-like 1##AK074185|AFAP1L1|134265|actin filament associated protein 1-like 1##BC125093|AFAP1L1|134265|actin filament associated protein 1-like 1##BC125094|AFAP1L1|134265|actin filament associated protein 1-like 1##NM_024028|PCYOX1L|78991|prenylcysteine oxidase 1 like##AK075414|PCYOX1L|78991|prenylcysteine oxidase 1 like##AF451985|PCYOX1L|78991|prenylcysteine oxidase 1 like##BC000014|PCYOX1L|78991|prenylcysteine oxidase 1 like##CR457192|IL17B|27190|interleukin 17B##BC113925|IL17B|27190|interleukin 17B##BC113946|IL17B|27190|interleukin 17B##AF152098|IL17B|27190|interleukin 17B##AF184969|IL17B|27190|interleukin 17B##AF218727|IL17B|27190|interleukin 17B##AY358931|IL17B|27190|interleukin 17B##AF110385|IL17B|27190|interleukin 17B##AF212311|IL17B|27190|interleukin 17B##NM_014443|IL17B|27190|interleukin 17B	1.171377	denovo_WM_21:-13:0.200	denovo_WM_21:-60:0.894
chr8	71314370	71314483	reg1000463.p1	7.891	+	TSC_hg19_v1_chr8_-_70983549 AF319458 AK022595 NM_024504	-330871	-	TSC_hg19_v1_chr8_-_70983468 BC052311	-330955	-	AK308488 AF205075 AK096879 NM_030958	-567177	-	BC092442 TSC_hg19_v1_chr8_-_71315599	1121	-	TSC_hg19_v1_chr8_-_71316041 NM_006540 X97674 AK308426	1600	-	BT007359 CR541654 CR541739 DQ892688 DQ895932 TSC_hg19_v1_chr8_-_71520586 AK292777 BC020283 BC000687 AK289397 X63679 BC037738	206096	-	AF319458|PRDM14|63978|PR domain containing 14##AK022595|PRDM14|63978|PR domain containing 14##NM_024504|PRDM14|63978|PR domain containing 14##BC052311|PRDM14|63978|PR domain containing 14##AK308488|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AF205075|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AK096879|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##NM_030958|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##BC092442|NCOA2|10499|nuclear receptor coactivator 2##NM_006540|NCOA2|10499|nuclear receptor coactivator 2##X97674|NCOA2|10499|nuclear receptor coactivator 2##AK308426|NCOA2|10499|nuclear receptor coactivator 2##BT007359|TRAM1|23471|translocation associated membrane protein 1##CR541654|TRAM1|23471|translocation associated membrane protein 1##CR541739|TRAM1|23471|translocation associated membrane protein 1##DQ892688|TRAM1|23471|translocation associated membrane protein 1##DQ895932|TRAM1|23471|translocation associated membrane protein 1##AK292777|TRAM1|23471|translocation associated membrane protein 1##BC020283|TRAM1|23471|translocation associated membrane protein 1##BC000687|TRAM1|23471|translocation associated membrane protein 1##AK289397|TRAM1|23471|translocation associated membrane protein 1##X63679|TRAM1|23471|translocation associated membrane protein 1##BC037738|TRAM1|23471|translocation associated membrane protein 1	0.922961	denovo_WM_21:3:0.923
chr9	34329283	34329409	reg1000220.p1	7.889	+	TSC_hg19_v1_chr9_-_34329214 NM_194313 AK310014	-135	-	TSC_hg19_v1_chr9_+_34179058 AF222043 BC098141 BC098316 BC099726 BC100668	-150264	+	AK223235 AK309329 TSC_hg19_v1_chr9_+_34179047	-150299	+	NM_001161 NM_001244390 NM_147172 NM_147173 TSC_hg19_v1_chr9_+_34329566 AK310574 U30313	192	+	TSC_hg19_v1_chr9_-_34376864 BC070098 NM_020702	47587	-	AK225981 AF367474 TSC_hg19_v1_chr9_-_34381563 AK094751 NM_001252195 NM_147168 NM_147169	52201	-	NM_194313|KIF24|347240|kinesin family member 24##AK310014|KIF24|347240|kinesin family member 24##AF222043|UBAP1|51271|ubiquitin associated protein 1##BC098141|UBAP1|51271|ubiquitin associated protein 1##BC098316|UBAP1|51271|ubiquitin associated protein 1##BC099726|UBAP1|51271|ubiquitin associated protein 1##BC100668|UBAP1|51271|ubiquitin associated protein 1##AK223235|UBAP1|51271|ubiquitin associated protein 1##AK309329|UBAP1|51271|ubiquitin associated protein 1##NM_001161|NUDT2|318|nudix (nucleoside diphosphate linked moiety X)-type motif 2##NM_001244390|NUDT2|318|nudix (nucleoside diphosphate linked moiety X)-type motif 2##NM_147172|NUDT2|318|nudix (nucleoside diphosphate linked moiety X)-type motif 2##NM_147173|NUDT2|318|nudix (nucleoside diphosphate linked moiety X)-type motif 2##U30313|NUDT2|318|nudix (nucleoside diphosphate linked moiety X)-type motif 2##BC070098|KIAA1161|57462|KIAA1161##NM_020702|KIAA1161|57462|KIAA1161##AK225981|C9orf24|84688|chromosome 9 open reading frame 24##AF367474|C9orf24|84688|chromosome 9 open reading frame 24##AK094751|C9orf24|84688|chromosome 9 open reading frame 24##NM_001252195|C9orf24|84688|chromosome 9 open reading frame 24##NM_147168|C9orf24|84688|chromosome 9 open reading frame 24##NM_147169|C9orf24|84688|chromosome 9 open reading frame 24	1.04553	denovo_WM_21:20:0.981
chr19	1205556	1205677	reg1000349.p1	7.885	+	TSC_hg19_v1_chr19_-_1174268 AK300981 AK292407 NM_014963	-31337	-	TSC_hg19_v1_chr19_-_1174260 AB023180	-31357	-	TSC_hg19_v1_chr19_-_1174256 BC052799	-31388	-	TSC_hg19_v1_chr19_+_1205777 NM_000455 AF217978	190	+	BC007981 AF035625 BC019334 AK314858 AB209553 EF644172 DQ893232 DQ896561 AB528360 CU675883 U63333 TSC_hg19_v1_chr19_+_1206921	1075	+	BC146278 BC148727 TSC_hg19_v1_chr19_+_1207211	1557	+	AK300981|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##AK292407|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##NM_014963|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##AB023180|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##NM_000455|STK11|6794|serine/threonine kinase 11##AF217978|STK11|6794|serine/threonine kinase 11##BC007981|STK11|6794|serine/threonine kinase 11##AF035625|STK11|6794|serine/threonine kinase 11##BC019334|STK11|6794|serine/threonine kinase 11##AK314858|STK11|6794|serine/threonine kinase 11##AB209553|STK11|6794|serine/threonine kinase 11##EF644172|STK11|6794|serine/threonine kinase 11##DQ893232|STK11|6794|serine/threonine kinase 11##DQ896561|STK11|6794|serine/threonine kinase 11##U63333|STK11|6794|serine/threonine kinase 11##BC146278|EFNA2|1943|ephrin-A2##BC148727|EFNA2|1943|ephrin-A2	1.134908	denovo_WM_21:-10:0.316	denovo_WM_21:-56:0.819
chr1	221915455	221915635	reg1000539.p1	7.883	+	TSC_hg19_v1_chr1_-_221915485 NM_007207 NM_144729	-59	-	TSC_hg19_v1_chr1_-_221915432 AK022513 AK293287	-115	-	AF179212 TSC_hg19_v1_chr1_-_221915417 BC063826 BC031405	-137	-	AY358602 BC007638 BC016552 NM_024746	805889	-	L39060 AK001054 AK290970 TSC_hg19_v1_chr1_-_222763247 BC013808 AK315740 AK299536 NM_001201536 NM_005681 NM_139352	847632	-	TSC_hg19_v1_chr1_+_222791438 NM_198551 AK307412 AY359091 DQ166034	875855	+	NM_007207|DUSP10|11221|dual specificity phosphatase 10##NM_144729|DUSP10|11221|dual specificity phosphatase 10##AK022513|DUSP10|11221|dual specificity phosphatase 10##AK293287|DUSP10|11221|dual specificity phosphatase 10##AF179212|DUSP10|11221|dual specificity phosphatase 10##BC063826|DUSP10|11221|dual specificity phosphatase 10##BC031405|DUSP10|11221|dual specificity phosphatase 10##AY358602|HHIPL2|79802|HHIP-like 2##BC007638|HHIPL2|79802|HHIP-like 2##BC016552|HHIPL2|79802|HHIP-like 2##NM_024746|HHIPL2|79802|HHIP-like 2##L39060|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##AK001054|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##AK290970|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##BC013808|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##AK315740|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##AK299536|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##NM_001201536|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##NM_005681|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##NM_139352|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##NM_198551|MIA3|375056|melanoma inhibitory activity family, member 3##AK307412|MIA3|375056|melanoma inhibitory activity family, member 3##AY359091|MIA3|375056|melanoma inhibitory activity family, member 3##DQ166034|MIA3|375056|melanoma inhibitory activity family, member 3	1.590345	denovo_WM_21:13:0.620	denovo_WM_21:-35:0.971
chr14	74551204	74551341	reg1000328.p1	7.876	+	TSC_hg19_v1_chr14_-_74551167 BC032371 NM_005589	-83	-	AF038011 TSC_hg19_v1_chr14_-_74551122 AF159889 CU678802 DQ892921 DQ893680 EU176729 AK223244 AJ249994 BC004909 AK222687 AF148505 AK312389 AK294243 AK311478	-157	-	TSC_hg19_v1_chr14_+_74486065 NM_025057 BC044808	-65187	+	NM_001024674 AK307062 TSC_hg19_v1_chr14_+_74551662 AK055422 AK023979 BC009539	396	+	AY336059 NM_182894 BC128153	154924	+	BT007412 CR457104 DQ892847 DQ896094 BC012815 TSC_hg19_v1_chr14_-_74769638 AK291332 AK308382 AF009746 AK297934 BX247984 BX248053 NM_005050	218418	-	BC032371|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##NM_005589|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AF038011|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AF159889|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##DQ892921|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##DQ893680|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##EU176729|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AK223244|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AJ249994|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##BC004909|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AK222687|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AF148505|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AK312389|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AK294243|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AK311478|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##NM_025057|C14orf45|80127|chromosome 14 open reading frame 45##BC044808|C14orf45|80127|chromosome 14 open reading frame 45##NM_001024674|LIN52|91750|lin-52 homolog (C. elegans)##AK307062|LIN52|91750|lin-52 homolog (C. elegans)##AK055422|LIN52|91750|lin-52 homolog (C. elegans)##AK023979|LIN52|91750|lin-52 homolog (C. elegans)##BC009539|LIN52|91750|lin-52 homolog (C. elegans)##AY336059|VSX2|338917|visual system homeobox 2##NM_182894|VSX2|338917|visual system homeobox 2##BC128153|VSX2|338917|visual system homeobox 2##BT007412|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##CR457104|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##DQ892847|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##DQ896094|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##BC012815|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AK291332|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AK308382|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AF009746|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AK297934|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##BX247984|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##BX248053|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##NM_005050|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4	0.711358	denovo_WM_21:-49:0.475
chr2	220094331	220094486	reg1000613.p1	7.863	+	TSC_hg19_v1_chr2_-_220094354 NM_001077198 NM_024085	-49	-	TSC_hg19_v1_chr2_-_220094331 AK302521 AK289755 BX538192 BX537984 BC065534 AK056595 BX538198	-113	-	TSC_hg19_v1_chr2_-_220083702 NM_005689	-10703	-	NM_018089 TSC_hg19_v1_chr2_+_220094589 AK001277 DQ412564 AK225275 BC028334 AK095304 AK303537 BC008948 AF364318 AK225309 AK303077 BC000238 AK023206 NM_001042410	141	+	TSC_hg19_v1_chr2_-_220110167 AY358639 NM_024506 BC028370	15747	-	TSC_hg19_v1_chr2_+_220110219 AK292694 NM_001008910 AK310793 AK298471 AK225526 AF060798 BC002618 AF203910 AK225392 BC053998 AK096954 AK302182	15799	+	NM_001077198|ATG9A|79065|ATG9 autophagy related 9 homolog A (S. cerevisiae)##NM_024085|ATG9A|79065|ATG9 autophagy related 9 homolog A (S. cerevisiae)##AK302521|ATG9A|79065|ATG9 autophagy related 9 homolog A (S. cerevisiae)##AK289755|ATG9A|79065|ATG9 autophagy related 9 homolog A (S. cerevisiae)##BX538192|ATG9A|79065|ATG9 autophagy related 9 homolog A (S. cerevisiae)##BX537984|ATG9A|79065|ATG9 autophagy related 9 homolog A (S. cerevisiae)##BC065534|ATG9A|79065|ATG9 autophagy related 9 homolog A (S. cerevisiae)##AK056595|ATG9A|79065|ATG9 autophagy related 9 homolog A (S. cerevisiae)##BX538198|ATG9A|79065|ATG9 autophagy related 9 homolog A (S. cerevisiae)##NM_005689|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6##NM_018089|ANKZF1|55139|ankyrin repeat and zinc finger domain containing 1##AK001277|ANKZF1|55139|ankyrin repeat and zinc finger domain containing 1##DQ412564|ANKZF1|55139|ankyrin repeat and zinc finger domain containing 1##AK225275|ANKZF1|55139|ankyrin repeat and zinc finger domain containing 1##BC028334|ANKZF1|55139|ankyrin repeat and zinc finger domain containing 1##AK095304|ANKZF1|55139|ankyrin repeat and zinc finger domain containing 1##AK303537|ANKZF1|55139|ankyrin repeat and zinc finger domain containing 1##BC008948|ANKZF1|55139|ankyrin repeat and zinc finger domain containing 1##AF364318|ANKZF1|55139|ankyrin repeat and zinc finger domain containing 1##AK225309|ANKZF1|55139|ankyrin repeat and zinc finger domain containing 1##AK303077|ANKZF1|55139|ankyrin repeat and zinc finger domain containing 1##BC000238|ANKZF1|55139|ankyrin repeat and zinc finger domain containing 1##AK023206|ANKZF1|55139|ankyrin repeat and zinc finger domain containing 1##NM_001042410|ANKZF1|55139|ankyrin repeat and zinc finger domain containing 1##AY358639|GLB1L|79411|galactosidase, beta 1-like##NM_024506|GLB1L|79411|galactosidase, beta 1-like##BC028370|GLB1L|79411|galactosidase, beta 1-like##AK292694|STK16|8576|serine/threonine kinase 16##NM_001008910|STK16|8576|serine/threonine kinase 16##AK310793|STK16|8576|serine/threonine kinase 16##AK298471|STK16|8576|serine/threonine kinase 16##AK225526|STK16|8576|serine/threonine kinase 16##AF060798|STK16|8576|serine/threonine kinase 16##BC002618|STK16|8576|serine/threonine kinase 16##AF203910|STK16|8576|serine/threonine kinase 16##AK225392|STK16|8576|serine/threonine kinase 16##BC053998|STK16|8576|serine/threonine kinase 16##AK096954|STK16|8576|serine/threonine kinase 16##AK302182|STK16|8576|serine/threonine kinase 16	0.851495	denovo_WM_21:-22:0.851
chr2	70141810	70141995	reg1000238.p1	7.851	+	NM_006857 TSC_hg19_v1_chr2_+_70121093 BC017890 X76302 AK291128 AK312041 CU676102	-20803	+	TSC_hg19_v1_chr2_+_70056924 AB527982 EU832645 EU832722 CU675651	-84931	+	AK024042 TSC_hg19_v1_chr2_+_70056791 BC007420 NM_178439 AK023119	-85095	+	TSC_hg19_v1_chr2_+_70142202 NM_001202513 NM_001202514 NM_002357 BC098396	291	+	TSC_hg19_v1_chr2_+_70142240 AK301088 AK312734	348	+	TSC_hg19_v1_chr2_+_70142307 L06895 BC113531 BC117260 BC143831 BC143832 BC144601 BC069377 BC069433 AB463858 CR536495 CR541692 CU686788 HQ258749	480	+	NM_006857|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)##BC017890|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)##X76302|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)##AK291128|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)##AK312041|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)##EU832645|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##EU832722|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##AK024042|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##BC007420|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##NM_178439|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##AK023119|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##NM_001202513|MXD1|4084|MAX dimerization protein 1##NM_001202514|MXD1|4084|MAX dimerization protein 1##NM_002357|MXD1|4084|MAX dimerization protein 1##BC098396|MXD1|4084|MAX dimerization protein 1##AK301088|MXD1|4084|MAX dimerization protein 1##AK312734|MXD1|4084|MAX dimerization protein 1##L06895|MXD1|4084|MAX dimerization protein 1##BC113531|MXD1|4084|MAX dimerization protein 1##BC117260|MXD1|4084|MAX dimerization protein 1##BC143831|MXD1|4084|MAX dimerization protein 1##BC143832|MXD1|4084|MAX dimerization protein 1##BC144601|MXD1|4084|MAX dimerization protein 1##BC069377|MXD1|4084|MAX dimerization protein 1##BC069433|MXD1|4084|MAX dimerization protein 1##CR536495|MXD1|4084|MAX dimerization protein 1##CR541692|MXD1|4084|MAX dimerization protein 1##HQ258749|MXD1|4084|MAX dimerization protein 1	1.267866	denovo_WM_21:-30:0.319	denovo_WM_21:57:0.949
chr6	37225432	37225556	reg1000557.p1	7.837	+	TSC_hg19_v1_chr6_-_37225372 BC026012 AK098666 BC029657 NM_145316	-108	-	TSC_hg19_v1_chr6_+_37137953 NM_001243186 NM_002648 M54915 BC020224 M24779 M16750 CU676514 AB528988 AK301158	-87372	+	TSC_hg19_v1_chr6_+_36973430 BC062363 BC023645 NM_173558 AK290419 AK301156 AK092732 AK300964 AX747694 AK024456 BC053655 BX648164 DQ893612 DQ894928	-251993	+	TSC_hg19_v1_chr6_+_37225547 AY313781 BC047658 NM_017772 AK096340 BC109026 BC109027 BX648317 AK292893 AB449909	105	+	TSC_hg19_v1_chr6_-_37225916 BC009625 NM_001162900	433	-	TSC_hg19_v1_chr6_+_37252169 BC063523	26696	+	BC026012|TMEM217|221468|transmembrane protein 217##AK098666|TMEM217|221468|transmembrane protein 217##BC029657|TMEM217|221468|transmembrane protein 217##NM_145316|TMEM217|221468|transmembrane protein 217##NM_001243186|PIM1|5292|pim-1 oncogene##NM_002648|PIM1|5292|pim-1 oncogene##M54915|PIM1|5292|pim-1 oncogene##BC020224|PIM1|5292|pim-1 oncogene##M24779|PIM1|5292|pim-1 oncogene##M16750|PIM1|5292|pim-1 oncogene##AK301158|PIM1|5292|pim-1 oncogene##BC062363|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##BC023645|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##NM_173558|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK290419|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK301156|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK092732|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK300964|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK024456|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##BC053655|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##BX648164|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##DQ893612|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##DQ894928|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AY313781|TBC1D22B|55633|TBC1 domain family, member 22B##BC047658|TBC1D22B|55633|TBC1 domain family, member 22B##NM_017772|TBC1D22B|55633|TBC1 domain family, member 22B##AK096340|TBC1D22B|55633|TBC1 domain family, member 22B##BC109026|TBC1D22B|55633|TBC1 domain family, member 22B##BC109027|TBC1D22B|55633|TBC1 domain family, member 22B##BX648317|TBC1D22B|55633|TBC1 domain family, member 22B##AK292893|TBC1D22B|55633|TBC1 domain family, member 22B##AB449909|TBC1D22B|55633|TBC1 domain family, member 22B##BC009625|TMEM217|221468|transmembrane protein 217##NM_001162900|TMEM217|221468|transmembrane protein 217##BC063523|TBC1D22B|55633|TBC1 domain family, member 22B	0.11305	
chr19	12444510	12444630	reg1000396.p1	7.836	+	AK313755 BC022523 AK092116 AX747362 NM_145276	-86	-	TSC_hg19_v1_chr19_-_12405615 BC136502 AK297528 BC032246 AB021642 BC001868 NM_001164276 NM_016264	-38918	-	TSC_hg19_v1_chr19_+_12305871 AK093188 AX721123	-138664	+	AK024418 AK295923 NM_030824	31890	-	TSC_hg19_v1_chr19_-_12512035 BC057831 NM_001080821	67484	-	AK299532 TSC_hg19_v1_chr19_-_12551771	107196	-	AK313755|ZNF563|147837|zinc finger protein 563##BC022523|ZNF563|147837|zinc finger protein 563##AK092116|ZNF563|147837|zinc finger protein 563##NM_145276|ZNF563|147837|zinc finger protein 563##BC136502|ZNF44|51710|zinc finger protein 44##AK297528|ZNF44|51710|zinc finger protein 44##BC032246|ZNF44|51710|zinc finger protein 44##AB021642|ZNF44|51710|zinc finger protein 44##BC001868|ZNF44|51710|zinc finger protein 44##NM_001164276|ZNF44|51710|zinc finger protein 44##NM_016264|ZNF44|51710|zinc finger protein 44##AK024418|ZNF442|79973|zinc finger protein 442##AK295923|ZNF442|79973|zinc finger protein 442##NM_030824|ZNF442|79973|zinc finger protein 442##NM_001080821|ZNF799|90576|zinc finger protein 799##AK299532|ZNF443|10224|zinc finger protein 443	0.978938	denovo_WM_21:-7:0.979
chr7	102004036	102004193	reg1000515.p1	7.835	+	NM_001146210	-7226	-	TSC_hg19_v1_chr7_+_101928431 AB000520	-75671	+	TSC_hg19_v1_chr7_+_101928390 NM_020979	-75717	+	TSC_hg19_v1_chr7_+_102004329 NM_001242713 BC063572 AK098276	197	+	TSC_hg19_v1_chr7_+_102004338 BC048257 BC066362	238	+	TSC_hg19_v1_chr7_+_102023018 AK098134	18919	+	NM_001146210|SPDYE6|729597|speedy homolog E6 (Xenopus laevis)##AB000520|SH2B2|10603|SH2B adaptor protein 2##NM_020979|SH2B2|10603|SH2B adaptor protein 2##NM_001242713|LOC100289561|100289561|uncharacterized LOC100289561##BC063572|LOC100630923|100630923|LOC100289561-PRKRIP1 readthrough##AK098276|LOC100630923|100630923|LOC100289561-PRKRIP1 readthrough	0.0	
chr19	17858331	17858453	reg1000414.p2	7.833	+	DQ387861 NM_018174 AL834233 BC067115 TSC_hg19_v1_chr19_+_17830310 BC080547 AJ440784 AK027623 BC113952 AK308975	-28083	+	TSC_hg19_v1_chr19_+_17830288 AK292555	-28102	+	AB028955 NM_001080421 AB587313 TSC_hg19_v1_chr19_-_17799158	-59294	-	TSC_hg19_v1_chr19_+_17858564 NM_001161357 NM_001161358 AK291410 BC028021	159	+	NM_001161359 NM_015122 TSC_hg19_v1_chr19_+_17862326 AK316458 BC041130	3924	+	TSC_hg19_v1_chr19_+_17905918 NM_014256	47524	+	DQ387861|MAP1S|55201|microtubule-associated protein 1S##NM_018174|MAP1S|55201|microtubule-associated protein 1S##AL834233|MAP1S|55201|microtubule-associated protein 1S##BC067115|MAP1S|55201|microtubule-associated protein 1S##BC080547|MAP1S|55201|microtubule-associated protein 1S##AJ440784|MAP1S|55201|microtubule-associated protein 1S##AK027623|MAP1S|55201|microtubule-associated protein 1S##BC113952|MAP1S|55201|microtubule-associated protein 1S##AK308975|MAP1S|55201|microtubule-associated protein 1S##AK292555|MAP1S|55201|microtubule-associated protein 1S##AB028955|UNC13A|23025|unc-13 homolog A (C. elegans)##NM_001080421|UNC13A|23025|unc-13 homolog A (C. elegans)##NM_001161357|FCHO1|23149|FCH domain only 1##NM_001161358|FCHO1|23149|FCH domain only 1##AK291410|FCHO1|23149|FCH domain only 1##BC028021|FCHO1|23149|FCH domain only 1##NM_001161359|FCHO1|23149|FCH domain only 1##NM_015122|FCHO1|23149|FCH domain only 1##AK316458|FCHO1|23149|FCH domain only 1##BC041130|FCHO1|23149|FCH domain only 1##NM_014256|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	0.898873	denovo_WM_21:-8:0.899
chr11	75526128	75526237	reg1000196.p2	7.829	+	TSC_hg19_v1_chr11_+_75479822 AB048286 AY780646 AY358532 AL834287 AF384161 CU677247 AY780647	-46259	+	TSC_hg19_v1_chr11_+_75479774 NM_032564 BC015234	-46405	+	AK026297 AK291998 AY157608 BC103876 BC103877 BC103878 NM_025098	-97284	+	NM_003369 TSC_hg19_v1_chr11_+_75526233 AK291011	40	+	TSC_hg19_v1_chr11_+_75526254 BC013176 AB012958 BC064837 AK222772	96	+	AB590784 BT019492 BC074790 BC074791 BC113386 BC113388 AB070218 NM_004626 Y12692 AK313570	391330	-	AB048286|DGAT2|84649|diacylglycerol O-acyltransferase 2##AY358532|DGAT2|84649|diacylglycerol O-acyltransferase 2##AL834287|DGAT2|84649|diacylglycerol O-acyltransferase 2##AF384161|DGAT2|84649|diacylglycerol O-acyltransferase 2##AY780647|DGAT2|84649|diacylglycerol O-acyltransferase 2##NM_032564|DGAT2|84649|diacylglycerol O-acyltransferase 2##BC015234|DGAT2|84649|diacylglycerol O-acyltransferase 2##AK026297|MOGAT2|80168|monoacylglycerol O-acyltransferase 2##AK291998|MOGAT2|80168|monoacylglycerol O-acyltransferase 2##AY157608|MOGAT2|80168|monoacylglycerol O-acyltransferase 2##BC103876|MOGAT2|80168|monoacylglycerol O-acyltransferase 2##BC103877|MOGAT2|80168|monoacylglycerol O-acyltransferase 2##BC103878|MOGAT2|80168|monoacylglycerol O-acyltransferase 2##NM_025098|MOGAT2|80168|monoacylglycerol O-acyltransferase 2##NM_003369|UVRAG|7405|UV radiation resistance associated gene##AK291011|UVRAG|7405|UV radiation resistance associated gene##BC013176|UVRAG|7405|UV radiation resistance associated gene##AB012958|UVRAG|7405|UV radiation resistance associated gene##BC064837|UVRAG|7405|UV radiation resistance associated gene##AK222772|UVRAG|7405|UV radiation resistance associated gene##BT019492|WNT11|7481|wingless-type MMTV integration site family, member 11##BC074790|WNT11|7481|wingless-type MMTV integration site family, member 11##BC074791|WNT11|7481|wingless-type MMTV integration site family, member 11##BC113386|WNT11|7481|wingless-type MMTV integration site family, member 11##BC113388|WNT11|7481|wingless-type MMTV integration site family, member 11##AB070218|WNT11|7481|wingless-type MMTV integration site family, member 11##NM_004626|WNT11|7481|wingless-type MMTV integration site family, member 11##Y12692|WNT11|7481|wingless-type MMTV integration site family, member 11##AK313570|WNT11|7481|wingless-type MMTV integration site family, member 11	0.934638	denovo_WM_21:31:0.935
chr17	8059806	8059957	reg1000306.p1	7.825	+	BC028207 TSC_hg19_v1_chr17_-_8059648 AK295410	-146	-	TSC_hg19_v1_chr17_-_8055723 AB088477 AF022991 AK291061 NM_002616	-4161	-	BC039887 AB049064 AB463716 NM_001165967 NM_032580	-32479	-	AL050223 TSC_hg19_v1_chr17_-_8064059	4121	-	TSC_hg19_v1_chr17_-_8066267 BC002737 AK289555 BC019608 BC033870 AK225777 NM_014232	6411	-	CU687070 BC006292 TSC_hg19_v1_chr17_-_8079699 AK127891 AK315666 AK027813 BC119730 BC119731 BC127649 BC127650 AY358525 BC070231 NM_032354 NM_183065	19779	-	BC028207|PER1|5187|period homolog 1 (Drosophila)##AK295410|PER1|5187|period homolog 1 (Drosophila)##AB088477|PER1|5187|period homolog 1 (Drosophila)##AF022991|PER1|5187|period homolog 1 (Drosophila)##AK291061|PER1|5187|period homolog 1 (Drosophila)##NM_002616|PER1|5187|period homolog 1 (Drosophila)##BC039887|HES7|84667|hairy and enhancer of split 7 (Drosophila)##AB049064|HES7|84667|hairy and enhancer of split 7 (Drosophila)##NM_001165967|HES7|84667|hairy and enhancer of split 7 (Drosophila)##NM_032580|HES7|84667|hairy and enhancer of split 7 (Drosophila)##AL050223|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##BC002737|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##AK289555|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##BC019608|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##BC033870|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##AK225777|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##NM_014232|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##BC006292|TMEM107|84314|transmembrane protein 107##AK315666|TMEM107|84314|transmembrane protein 107##AK027813|TMEM107|84314|transmembrane protein 107##BC119730|TMEM107|84314|transmembrane protein 107##BC119731|TMEM107|84314|transmembrane protein 107##BC127649|TMEM107|84314|transmembrane protein 107##BC127650|TMEM107|84314|transmembrane protein 107##AY358525|TMEM107|84314|transmembrane protein 107##BC070231|TMEM107|84314|transmembrane protein 107##NM_032354|TMEM107|84314|transmembrane protein 107##NM_183065|TMEM107|84314|transmembrane protein 107	1.962866	denovo_WM_21:55:0.985	denovo_WM_21:-57:0.957
chr19	51897589	51897733	reg1000375.p2	7.807	+	TSC_hg19_v1_chr19_-_51893838 BC085012 BC143997 BC043532 NM_001193623	-3836	-	BC074916 BC074917 BC126139 AF340019 BC069430 AF340020 NM_001161748 NM_030657	-6464	-	DQ895942 EU176419 BC015759 TSC_hg19_v1_chr19_-_51875909 NM_005601 S69115	-21782	-	TSC_hg19_v1_chr19_-_51920897 AK289900 AF310233 AY358337 AK290542 AK294185 AK303514 AK303717 BC101725 BC143497 BC143500 AF301007 AK292025 AK308982 AY032685 AF311905 NM_001171156 NM_001171157 NM_001171158 NM_001171159 NM_001171160 NM_001171161 NM_033130	23287	-	AF310234 AK290412 AF195092 AF223403 BC053319 AK290149 AK295589 NM_014442	64016	-	NM_001080405	82176	+	BC085012|LOC147646|147646|uncharacterized LOC147646##BC043532|LOC147646|147646|uncharacterized LOC147646##NM_001193623|LOC147646|147646|uncharacterized LOC147646##BC074916|LIM2|3982|lens intrinsic membrane protein 2, 19kDa##BC074917|LIM2|3982|lens intrinsic membrane protein 2, 19kDa##BC126139|LIM2|3982|lens intrinsic membrane protein 2, 19kDa##AF340019|LIM2|3982|lens intrinsic membrane protein 2, 19kDa##BC069430|LIM2|3982|lens intrinsic membrane protein 2, 19kDa##AF340020|LIM2|3982|lens intrinsic membrane protein 2, 19kDa##NM_001161748|LIM2|3982|lens intrinsic membrane protein 2, 19kDa##NM_030657|LIM2|3982|lens intrinsic membrane protein 2, 19kDa##DQ895942|NKG7|4818|natural killer cell group 7 sequence##EU176419|NKG7|4818|natural killer cell group 7 sequence##BC015759|NKG7|4818|natural killer cell group 7 sequence##NM_005601|NKG7|4818|natural killer cell group 7 sequence##S69115|NKG7|4818|natural killer cell group 7 sequence##AK289900|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AF310233|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AY358337|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AK290542|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AK294185|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AK303514|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AK303717|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##BC101725|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##BC143497|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##BC143500|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AF301007|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AK292025|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AK308982|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AY032685|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AF311905|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##NM_001171156|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##NM_001171157|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##NM_001171158|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##NM_001171159|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##NM_001171160|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##NM_001171161|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##NM_033130|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AF310234|SIGLEC8|27181|sialic acid binding Ig-like lectin 8##AK290412|SIGLEC8|27181|sialic acid binding Ig-like lectin 8##AF195092|SIGLEC8|27181|sialic acid binding Ig-like lectin 8##AF223403|SIGLEC8|27181|sialic acid binding Ig-like lectin 8##BC053319|SIGLEC8|27181|sialic acid binding Ig-like lectin 8##AK290149|SIGLEC8|27181|sialic acid binding Ig-like lectin 8##AK295589|SIGLEC8|27181|sialic acid binding Ig-like lectin 8##NM_014442|SIGLEC8|27181|sialic acid binding Ig-like lectin 8##NM_001080405|CEACAM18|729767|carcinoembryonic antigen-related cell adhesion molecule 18	1.467237	denovo_WM_21:-1:0.479	denovo_WM_21:54:0.988
chr8	118532788	118532927	reg1000517.p1	7.805	+	NM_001172814 NM_173851	-385521	+	AK298294 NM_001172813 NM_001172815 AL713790	-569654	+	EF560713 NM_001172811	-570346	+	TSC_hg19_v1_chr8_+_118532964 NM_080651	101	+	TSC_hg19_v1_chr8_+_118532970 BC008226 FM179284 AB463866 DQ891518 DQ894708 AY083305	185	+	AK313129 S79639 TSC_hg19_v1_chr8_-_119124066 NM_000127	591104	-	NM_001172814|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##NM_173851|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##AK298294|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##NM_001172813|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##NM_001172815|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##AL713790|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##EF560713|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##NM_001172811|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##NM_080651|MED30|90390|mediator complex subunit 30##BC008226|MED30|90390|mediator complex subunit 30##FM179284|MED30|90390|mediator complex subunit 30##DQ891518|MED30|90390|mediator complex subunit 30##DQ894708|MED30|90390|mediator complex subunit 30##AY083305|MED30|90390|mediator complex subunit 30##AK313129|EXT1|2131|exostosin 1##S79639|EXT1|2131|exostosin 1##NM_000127|EXT1|2131|exostosin 1	0.746903	denovo_WM_21:-15:0.747
chr17	43239036	43239156	reg1000505.p1	7.802	+	AK056946 NM_144608	-833	+	TSC_hg19_v1_chr17_+_43225936 BC006460	-13161	+	TSC_hg19_v1_chr17_+_43225841 AK023624 AB021179	-13245	+	TSC_hg19_v1_chr17_+_43299284 AY278319 NM_005892 BC111564	60264	+	AK096807 TSC_hg19_v1_chr17_-_43319268	80100	-	TSC_hg19_v1_chr17_+_43325300 AK311429	86208	+	AK056946|HEXIM2|124790|hexamethylene bis-acetamide inducible 2##NM_144608|HEXIM2|124790|hexamethylene bis-acetamide inducible 2##BC006460|HEXIM1|10614|hexamethylene bis-acetamide inducible 1##AK023624|HEXIM1|10614|hexamethylene bis-acetamide inducible 1##AB021179|HEXIM1|10614|hexamethylene bis-acetamide inducible 1##AY278319|FMNL1|752|formin-like 1##NM_005892|FMNL1|752|formin-like 1##BC111564|FMNL1|752|formin-like 1##AK311429|LOC100133991|100133991|uncharacterized LOC100133991	0.90018	denovo_WM_21:-6:0.900
chr10	131909397	131909522	reg1000440.p2	7.791	+	TSC_hg19_v1_chr10_-_131909090 EU250747 AK094118	-378	-	TSC_hg19_v1_chr10_-_131762539 AK097335	-146934	-	AL832828 AB527459 HQ258299 BC126130 BC130479 NM_001005463	-147406	-	TSC_hg19_v1_chr10_+_131934662 NM_001199868 NM_006541 BC005289 AK022131 AF118652	25196	+	TSC_hg19_v1_chr10_+_131934675 AF118649 AK225609	25216	+	TSC_hg19_v1_chr10_+_131934681 AJ010841 AB463691	25256	+	EU250747|LOC387723|387723|uncharacterized LOC387723##AK094118|LOC387723|387723|uncharacterized LOC387723##AK097335|EBF3|253738|early B-cell factor 3##AL832828|EBF3|253738|early B-cell factor 3##HQ258299|EBF3|253738|early B-cell factor 3##BC126130|EBF3|253738|early B-cell factor 3##BC130479|EBF3|253738|early B-cell factor 3##NM_001005463|EBF3|253738|early B-cell factor 3##NM_001199868|GLRX3|10539|glutaredoxin 3##NM_006541|GLRX3|10539|glutaredoxin 3##BC005289|GLRX3|10539|glutaredoxin 3##AK022131|GLRX3|10539|glutaredoxin 3##AF118652|GLRX3|10539|glutaredoxin 3##AF118649|GLRX3|10539|glutaredoxin 3##AK225609|GLRX3|10539|glutaredoxin 3##AJ010841|GLRX3|10539|glutaredoxin 3	0.615831	denovo_WM_21:-38:0.616
chr9	5304235	5304380	reg1000656.p1	7.790	+	BC026254 AK291543 L34838 NM_002195 CU693182	-72845	+	AF135824 HQ258002 AF156094 NM_007179 BC126473 BC126475	-118694	-	TSC_hg19_v1_chr9_+_4985271 AF005216 NM_004972 AF058925	-319048	+	HQ258745 NM_005059 NM_134441 X00948 BC126415 BC126419	287	-	X00949 DQ893302 DQ896468 BC005956 NM_006911	35501	-	TSC_hg19_v1_chr9_-_5437869 BC008212 AF220050 AK312736 AK027594 AF225420 NM_018465	133573	-	BC026254|INSL4|3641|insulin-like 4 (placenta)##AK291543|INSL4|3641|insulin-like 4 (placenta)##L34838|INSL4|3641|insulin-like 4 (placenta)##NM_002195|INSL4|3641|insulin-like 4 (placenta)##AF135824|INSL6|11172|insulin-like 6##HQ258002|INSL6|11172|insulin-like 6##AF156094|INSL6|11172|insulin-like 6##NM_007179|INSL6|11172|insulin-like 6##BC126473|INSL6|11172|insulin-like 6##BC126475|INSL6|11172|insulin-like 6##AF005216|JAK2|3717|Janus kinase 2##NM_004972|JAK2|3717|Janus kinase 2##AF058925|JAK2|3717|Janus kinase 2##HQ258745|RLN2|6019|relaxin 2##NM_005059|RLN2|6019|relaxin 2##NM_134441|RLN2|6019|relaxin 2##X00948|RLN2|6019|relaxin 2##BC126415|RLN2|6019|relaxin 2##BC126419|RLN2|6019|relaxin 2##X00949|RLN1|6013|relaxin 1##DQ893302|RLN1|6013|relaxin 1##DQ896468|RLN1|6013|relaxin 1##BC005956|RLN1|6013|relaxin 1##NM_006911|RLN1|6013|relaxin 1##BC008212|C9orf46|55848|chromosome 9 open reading frame 46##AF220050|C9orf46|55848|chromosome 9 open reading frame 46##AK312736|C9orf46|55848|chromosome 9 open reading frame 46##AK027594|C9orf46|55848|chromosome 9 open reading frame 46##AF225420|C9orf46|55848|chromosome 9 open reading frame 46##NM_018465|C9orf46|55848|chromosome 9 open reading frame 46	1.819294	denovo_WM_21:21:0.949	denovo_WM_21:-41:0.870
chr12	58138666	58138814	reg1000581.p2	7.788	+	AF413077 BC028020 AK292672 AF384128 D79989 NM_014770	-2842	-	AY128689 NM_001122772	-6712	-	TSC_hg19_v1_chr12_+_58120054 AK301303 BC069024 BC098453 BC039697 BC019026	-18672	+	AK315765 NM_005981 BX647402 TSC_hg19_v1_chr12_+_58138821 BC010377 U01160 AK294128 CR407647 DQ892877 DQ896127	60	+	U79269 AK313701 Z48970 BC003644 BC010153 TSC_hg19_v1_chr12_-_58146082	7326	-	AK297901 TSC_hg19_v1_chr12_-_58146108	7368	-	AF413077|AGAP2|116986|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2##BC028020|AGAP2|116986|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2##AK292672|AGAP2|116986|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2##AF384128|AGAP2|116986|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2##D79989|AGAP2|116986|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2##NM_014770|AGAP2|116986|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2##AY128689|AGAP2|116986|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2##NM_001122772|AGAP2|116986|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2##AK301303|LOC100130776|100130776|uncharacterized LOC100130776##BC069024|LOC100130776|100130776|uncharacterized LOC100130776##BC039697|LOC100130776|100130776|uncharacterized LOC100130776##BC019026|LOC100130776|100130776|uncharacterized LOC100130776##AK315765|TSPAN31|6302|tetraspanin 31##NM_005981|TSPAN31|6302|tetraspanin 31##BX647402|TSPAN31|6302|tetraspanin 31##BC010377|TSPAN31|6302|tetraspanin 31##U01160|TSPAN31|6302|tetraspanin 31##AK294128|TSPAN31|6302|tetraspanin 31##CR407647|TSPAN31|6302|tetraspanin 31##DQ892877|TSPAN31|6302|tetraspanin 31##DQ896127|TSPAN31|6302|tetraspanin 31##U79269|CDK4|1019|cyclin-dependent kinase 4##AK313701|CDK4|1019|cyclin-dependent kinase 4##Z48970|CDK4|1019|cyclin-dependent kinase 4##BC003644|CDK4|1019|cyclin-dependent kinase 4##BC010153|CDK4|1019|cyclin-dependent kinase 4##AK297901|CDK4|1019|cyclin-dependent kinase 4	0.023232	
chr10	104261914	104262078	reg1000605.p1	7.758	+	TSC_hg19_v1_chr10_+_104221184 AK301612 AY358808 NM_024789	-40814	+	TSC_hg19_v1_chr10_+_104221151 AK296583	-40846	+	BC126459 AK024342 NM_024886	-50725	-	CU674342 AM393135 DQ892689 DQ895934 AB462953 BC026016 TSC_hg19_v1_chr10_-_104262470 BC000693 Z14978 X82206 AK302072 AK312506 AK297362 AK297620 NM_005736	461	-	TSC_hg19_v1_chr10_+_104263721 NM_001178133 NM_016169	1723	+	TSC_hg19_v1_chr10_+_104263759 AK312319 BC013291 AF175770 AF144231 AF159447 AY358550 AF222345 AB590231 DQ892586 DQ895804 AF172319	1823	+	AK301612|TMEM180|79847|transmembrane protein 180##AY358808|TMEM180|79847|transmembrane protein 180##NM_024789|TMEM180|79847|transmembrane protein 180##AK296583|TMEM180|79847|transmembrane protein 180##BC126459|C10orf95|79946|chromosome 10 open reading frame 95##AK024342|C10orf95|79946|chromosome 10 open reading frame 95##NM_024886|C10orf95|79946|chromosome 10 open reading frame 95##AM393135|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##DQ892689|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##DQ895934|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##BC026016|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##BC000693|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##Z14978|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##X82206|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##AK302072|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##AK312506|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##AK297362|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##AK297620|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##NM_005736|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##NM_001178133|SUFU|51684|suppressor of fused homolog (Drosophila)##NM_016169|SUFU|51684|suppressor of fused homolog (Drosophila)##AK312319|SUFU|51684|suppressor of fused homolog (Drosophila)##BC013291|SUFU|51684|suppressor of fused homolog (Drosophila)##AF175770|SUFU|51684|suppressor of fused homolog (Drosophila)##AF144231|SUFU|51684|suppressor of fused homolog (Drosophila)##AF159447|SUFU|51684|suppressor of fused homolog (Drosophila)##AY358550|SUFU|51684|suppressor of fused homolog (Drosophila)##AF222345|SUFU|51684|suppressor of fused homolog (Drosophila)##DQ892586|SUFU|51684|suppressor of fused homolog (Drosophila)##DQ895804|SUFU|51684|suppressor of fused homolog (Drosophila)##AF172319|SUFU|51684|suppressor of fused homolog (Drosophila)	0.775708	denovo_WM_21:-39:0.776
chr12	123459254	123459405	reg1000359.p1	7.752	+	BC009181 BC071172 BC015605 BC047676 AK095481 AK023553 NM_024623 BC033857	-23	+	AF216494 AK304295 TSC_hg19_v1_chr12_-_123451051 NM_001243013 NM_001243014 NM_019624 NM_019625 NM_203444	-8282	-	TSC_hg19_v1_chr12_-_123450999 AK027624 AB177852 AB112582 AB112583	-8351	-	TSC_hg19_v1_chr12_-_123459740 BC064384	376	-	TSC_hg19_v1_chr12_+_123459790 AK094820 BX640675 AK303095 BX640734 AK074098	475	+	BC094839 NM_001002251 NM_001002252 NM_016638 NM_018694	5546	+	BC009181|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BC071172|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BC015605|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BC047676|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##AK095481|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##AK023553|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##NM_024623|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BC033857|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##AF216494|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AK304295|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_001243013|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_001243014|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_019624|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_019625|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_203444|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AK027624|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AB177852|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AB112582|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AB112583|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##BC064384|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AK094820|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BX640675|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##AK303095|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BX640734|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BC094839|ARL6IP4|51329|ADP-ribosylation-like factor 6 interacting protein 4##NM_001002251|ARL6IP4|51329|ADP-ribosylation-like factor 6 interacting protein 4##NM_001002252|ARL6IP4|51329|ADP-ribosylation-like factor 6 interacting protein 4##NM_016638|ARL6IP4|51329|ADP-ribosylation-like factor 6 interacting protein 4##NM_018694|ARL6IP4|51329|ADP-ribosylation-like factor 6 interacting protein 4	0.0	
chr4	175204375	175204477	reg1000406.p1	7.747	+	EF529495 EF529496 EF529497 EF529498 EF529499 EF529500 EF529501 EF529502 EF529503 EF529504 EF529505 EF529506 EF529507 EF529508 EF529509 EU000853 EU000854 EU000855 EU000856 TSC_hg19_v1_chr4_+_174451609 AB075501 AK300846 AK054605	-752816	+	TSC_hg19_v1_chr4_-_174451381 NM_021973 AK122739 FJ226608	-753057	-	BC101406 BC101974 BC109383 TSC_hg19_v1_chr4_-_174450570	-753876	-	AF174596 AF233224 TSC_hg19_v1_chr4_-_175204794 AF115514 AY358721 BC014679 AF201932 AK026319 BC040456 AK314483	308	-	NM_001040157 TSC_hg19_v1_chr4_+_175204877	434	+	TSC_hg19_v1_chr4_+_175205073 NM_001145314 BC038667 AB051499 AK094961 AK292484	687	+	EF529495|NBLA00301|79804|Nbla00301##EF529496|NBLA00301|79804|Nbla00301##EF529497|NBLA00301|79804|Nbla00301##EF529498|NBLA00301|79804|Nbla00301##EF529499|NBLA00301|79804|Nbla00301##EF529500|NBLA00301|79804|Nbla00301##EF529501|NBLA00301|79804|Nbla00301##EF529502|NBLA00301|79804|Nbla00301##EF529503|NBLA00301|79804|Nbla00301##EF529504|NBLA00301|79804|Nbla00301##EF529505|NBLA00301|79804|Nbla00301##EF529506|NBLA00301|79804|Nbla00301##EF529507|NBLA00301|79804|Nbla00301##EF529508|NBLA00301|79804|Nbla00301##EF529509|NBLA00301|79804|Nbla00301##EU000853|NBLA00301|79804|Nbla00301##EU000854|NBLA00301|79804|Nbla00301##EU000855|NBLA00301|79804|Nbla00301##EU000856|NBLA00301|79804|Nbla00301##AB075501|NBLA00301|79804|Nbla00301##AK054605|NBLA00301|79804|Nbla00301##NM_021973|HAND2|9464|heart and neural crest derivatives expressed 2##AK122739|HAND2|9464|heart and neural crest derivatives expressed 2##FJ226608|HAND2|9464|heart and neural crest derivatives expressed 2##BC101406|HAND2|9464|heart and neural crest derivatives expressed 2##BC101974|HAND2|9464|heart and neural crest derivatives expressed 2##BC109383|HAND2|9464|heart and neural crest derivatives expressed 2##AF174596|FBXO8|26269|F-box protein 8##AF233224|FBXO8|26269|F-box protein 8##AF115514|FBXO8|26269|F-box protein 8##AY358721|FBXO8|26269|F-box protein 8##BC014679|FBXO8|26269|F-box protein 8##AF201932|FBXO8|26269|F-box protein 8##AK026319|FBXO8|26269|F-box protein 8##BC040456|FBXO8|26269|F-box protein 8##AK314483|FBXO8|26269|F-box protein 8##NM_001040157|CEP44|80817|centrosomal protein 44kDa##NM_001145314|CEP44|80817|centrosomal protein 44kDa##BC038667|CEP44|80817|centrosomal protein 44kDa##AB051499|CEP44|80817|centrosomal protein 44kDa##AK094961|CEP44|80817|centrosomal protein 44kDa##AK292484|CEP44|80817|centrosomal protein 44kDa	0.763401	denovo_WM_21:2:0.763
chr1	201123700	201123853	reg1000439.p1	7.733	+	AK075335 AY138587 AK296307 TSC_hg19_v1_chr1_-_201123603 BC001106 AL136600 AK054883 AK303843 NM_016456	-164	-	TSC_hg19_v1_chr1_-_201123569 AK091726	-205	-	L33798 NM_000069	-42083	-	BC033185 NM_001164586	36176	+	NM_000299 NM_001005337 Z34974 AK315291 X79293 BC114571 BC115702	128861	+	TSC_hg19_v1_chr1_-_201342319 X79855 X79856 X79858 CU678094 S64668 X74819 X79859	218604	-	AK075335|TMEM9|252839|transmembrane protein 9##AY138587|TMEM9|252839|transmembrane protein 9##AK296307|TMEM9|252839|transmembrane protein 9##BC001106|TMEM9|252839|transmembrane protein 9##AL136600|TMEM9|252839|transmembrane protein 9##AK054883|TMEM9|252839|transmembrane protein 9##AK303843|TMEM9|252839|transmembrane protein 9##NM_016456|TMEM9|252839|transmembrane protein 9##AK091726|TMEM9|252839|transmembrane protein 9##L33798|CACNA1S|779|calcium channel, voltage-dependent, L type, alpha 1S subunit##NM_000069|CACNA1S|779|calcium channel, voltage-dependent, L type, alpha 1S subunit##BC033185|IGFN1|91156|immunoglobulin-like and fibronectin type III domain containing 1##NM_001164586|IGFN1|91156|immunoglobulin-like and fibronectin type III domain containing 1##NM_000299|PKP1|5317|plakophilin 1 (ectodermal dysplasia/skin fragility syndrome)##NM_001005337|PKP1|5317|plakophilin 1 (ectodermal dysplasia/skin fragility syndrome)##Z34974|PKP1|5317|plakophilin 1 (ectodermal dysplasia/skin fragility syndrome)##AK315291|PKP1|5317|plakophilin 1 (ectodermal dysplasia/skin fragility syndrome)##X79293|PKP1|5317|plakophilin 1 (ectodermal dysplasia/skin fragility syndrome)##BC114571|PKP1|5317|plakophilin 1 (ectodermal dysplasia/skin fragility syndrome)##BC115702|PKP1|5317|plakophilin 1 (ectodermal dysplasia/skin fragility syndrome)##X79855|TNNT2|7139|troponin T type 2 (cardiac)##X79856|TNNT2|7139|troponin T type 2 (cardiac)##X79858|TNNT2|7139|troponin T type 2 (cardiac)##S64668|TNNT2|7139|troponin T type 2 (cardiac)##X74819|TNNT2|7139|troponin T type 2 (cardiac)##X79859|TNNT2|7139|troponin T type 2 (cardiac)	0.0	
chr19	797206	797363	reg1000373.p1	7.720	+	TSC_hg19_v1_chr19_+_751132 BC052236 BX648389 BC042125 NM_173481	-46155	+	TSC_hg19_v1_chr19_+_708934 NM_001040134 NM_002579 AK299809 AK315168 BC032449 Y14770	-88335	+	BC137161 BC144505 NM_214710	-101824	-	TSC_hg19_v1_chr19_+_797414 NM_002819 NM_031990 NM_031991 NM_175847 X66975 BC002397 BC023219	132	+	TSC_hg19_v1_chr19_+_797446 AB208910	161	+	TSC_hg19_v1_chr19_+_797448 X62006 X65371 X65372	165	+	BC052236|C19orf21|126353|chromosome 19 open reading frame 21##BX648389|C19orf21|126353|chromosome 19 open reading frame 21##BC042125|C19orf21|126353|chromosome 19 open reading frame 21##NM_173481|C19orf21|126353|chromosome 19 open reading frame 21##NM_001040134|PALM|5064|paralemmin##NM_002579|PALM|5064|paralemmin##AK315168|PALM|5064|paralemmin##BC032449|PALM|5064|paralemmin##Y14770|PALM|5064|paralemmin##BC137161|PRSS57|400668|protease, serine, 57##BC144505|PRSS57|400668|protease, serine, 57##NM_214710|PRSS57|400668|protease, serine, 57##NM_002819|PTBP1|5725|polypyrimidine tract binding protein 1##NM_031990|PTBP1|5725|polypyrimidine tract binding protein 1##NM_031991|PTBP1|5725|polypyrimidine tract binding protein 1##NM_175847|PTBP1|5725|polypyrimidine tract binding protein 1##X66975|PTBP1|5725|polypyrimidine tract binding protein 1##BC002397|PTBP1|5725|polypyrimidine tract binding protein 1##BC023219|PTBP1|5725|polypyrimidine tract binding protein 1##AB208910|PTBP1|5725|polypyrimidine tract binding protein 1##X62006|PTBP1|5725|polypyrimidine tract binding protein 1##X65371|PTBP1|5725|polypyrimidine tract binding protein 1##X65372|PTBP1|5725|polypyrimidine tract binding protein 1	0.870859	denovo_WM_21:83:0.837
chr2	219260949	219261076	reg1000570.p1	7.706	+	AK307954 NM_000578 TSC_hg19_v1_chr2_+_219246995 D50402 AB209650 AK303398 AK310914 AK298667 AK311405 D50403 AK294707 BC041787 L32185 BC071165 BC033754	-14103	+	BC052750 NM_198559 CU690932	-39421	+	TSC_hg19_v1_chr2_+_219188021 AY358753 CU678300 AM393075 AM393168 BC002937 AK309308	-72975	+	NM_001206878	2048	+	AF229162 NM_021198 NM_182642 TSC_hg19_v1_chr2_+_219264577	3528	+	TSC_hg19_v1_chr2_+_219264739 BC012977 AB463546 EU446878 CU680458 AY279529	3769	+	AK307954|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##NM_000578|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##D50402|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##AB209650|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##AK303398|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##AK310914|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##AK298667|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##AK311405|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##D50403|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##AK294707|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##BC041787|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##L32185|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##BC071165|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##BC033754|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##BC052750|C2orf62|375307|chromosome 2 open reading frame 62##NM_198559|C2orf62|375307|chromosome 2 open reading frame 62##AY358753|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AM393075|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AM393168|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##BC002937|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AK309308|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##NM_001206878|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1##AF229162|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1##NM_021198|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1##NM_182642|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1##BC012977|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1##EU446878|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1##AY279529|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	0.0	
chr19	49223988	49224104	reg1000441.p1	7.701	+	TSC_hg19_v1_chr19_-_49222963 NM_001130915 AK131427	-1080	-	AK093389 AX748093 NM_182574 BC106047	-3801	-	NM_000511 NM_001097638 AK290277 D87942 BC001899 BC121066	-24785	+	BC028614 AY378097 NM_017805 BC042111	19860	-	AB195682 BC034769 NM_182575 AK301750	26049	-	D87935 D87936 D87937 NM_000148	34600	-	NM_001130915|MAMSTR|284358|MEF2 activating motif and SAP domain containing transcriptional regulator##AK131427|MAMSTR|284358|MEF2 activating motif and SAP domain containing transcriptional regulator##AK093389|MAMSTR|284358|MEF2 activating motif and SAP domain containing transcriptional regulator##NM_182574|MAMSTR|284358|MEF2 activating motif and SAP domain containing transcriptional regulator##BC106047|MAMSTR|284358|MEF2 activating motif and SAP domain containing transcriptional regulator##NM_000511|FUT2|2524|fucosyltransferase 2 (secretor status included)##NM_001097638|FUT2|2524|fucosyltransferase 2 (secretor status included)##AK290277|FUT2|2524|fucosyltransferase 2 (secretor status included)##D87942|FUT2|2524|fucosyltransferase 2 (secretor status included)##BC001899|FUT2|2524|fucosyltransferase 2 (secretor status included)##BC121066|FUT2|2524|fucosyltransferase 2 (secretor status included)##BC028614|RASIP1|54922|Ras interacting protein 1##AY378097|RASIP1|54922|Ras interacting protein 1##NM_017805|RASIP1|54922|Ras interacting protein 1##BC042111|RASIP1|54922|Ras interacting protein 1##AB195682|IZUMO1|284359|izumo sperm-egg fusion 1##BC034769|IZUMO1|284359|izumo sperm-egg fusion 1##NM_182575|IZUMO1|284359|izumo sperm-egg fusion 1##AK301750|IZUMO1|284359|izumo sperm-egg fusion 1##D87935|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##D87936|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##D87937|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##NM_000148|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)	0.082904	
chr17	12921327	12921434	reg1000459.p1	7.700	+	TSC_hg19_v1_chr17_-_12921332 AK001392 NM_001165962 NM_018127 NM_173717	-24	-	TSC_hg19_v1_chr17_-_12921325 AK298397 AK094687 BC001939 BC004158	-61	-	TSC_hg19_v1_chr17_-_12921295 AK300011 AF304370 CR457261 CU674942	-104	-	AY358838 TSC_hg19_v1_chr17_-_13505228 AF105376 NM_006042 AK292047	583857	-	TSC_hg19_v1_chr17_-_13972756 AK123100	1051382	-	NM_001303 TSC_hg19_v1_chr17_+_13972839 AK312718	1051399	+	AK001392|ELAC2|60528|elaC homolog 2 (E. coli)##NM_001165962|ELAC2|60528|elaC homolog 2 (E. coli)##NM_018127|ELAC2|60528|elaC homolog 2 (E. coli)##NM_173717|ELAC2|60528|elaC homolog 2 (E. coli)##AK298397|ELAC2|60528|elaC homolog 2 (E. coli)##AK094687|ELAC2|60528|elaC homolog 2 (E. coli)##BC001939|ELAC2|60528|elaC homolog 2 (E. coli)##BC004158|ELAC2|60528|elaC homolog 2 (E. coli)##AK300011|ELAC2|60528|elaC homolog 2 (E. coli)##AF304370|ELAC2|60528|elaC homolog 2 (E. coli)##CR457261|ELAC2|60528|elaC homolog 2 (E. coli)##AY358838|HS3ST3A1|9955|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1##AF105376|HS3ST3A1|9955|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1##NM_006042|HS3ST3A1|9955|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1##AK292047|HS3ST3A1|9955|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1##NM_001303|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##AK312718|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	1.549568	denovo_WM_21:-20:0.966	denovo_WM_21:29:0.584
chr16	46723449	46723581	reg1000432.p2	7.699	+	TSC_hg19_v1_chr16_-_46723112 NM_018206	-388	-	BC041367 BC010362 AK223218 AF191298 TSC_hg19_v1_chr16_-_46723091 AK001614 AF175265 AF186382 BC093036 AL136888	-453	-	TSC_hg19_v1_chr16_-_46655304 NM_024745	-68209	-	BC050725 NM_014321 AK024019 TSC_hg19_v1_chr16_+_46723570 AK024077	50	+	AF139658 TSC_hg19_v1_chr16_+_46723600 BC039032 BC063565 AK310633 AK021946 AB528212 AM392646 AM392910 AM393245 AM393680 AM393794 CU687764	82	+	AB451455 BC109096 BC109097 AJ247087 NM_182493	58647	-	NM_018206|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##BC041367|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##BC010362|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AK223218|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF191298|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AK001614|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF175265|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF186382|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##BC093036|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AL136888|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##NM_024745|SHCBP1|79801|SHC SH2-domain binding protein 1##BC050725|ORC6|23594|origin recognition complex, subunit 6##NM_014321|ORC6|23594|origin recognition complex, subunit 6##AK024019|ORC6|23594|origin recognition complex, subunit 6##AK024077|ORC6|23594|origin recognition complex, subunit 6##AF139658|ORC6|23594|origin recognition complex, subunit 6##BC039032|ORC6|23594|origin recognition complex, subunit 6##BC063565|ORC6|23594|origin recognition complex, subunit 6##AK310633|ORC6|23594|origin recognition complex, subunit 6##AK021946|ORC6|23594|origin recognition complex, subunit 6##AM392646|ORC6|23594|origin recognition complex, subunit 6##AM392910|ORC6|23594|origin recognition complex, subunit 6##AM393245|PPA2|27068|pyrophosphatase (inorganic) 2##AM393680|ORC6|23594|origin recognition complex, subunit 6##AM393794|PPA2|27068|pyrophosphatase (inorganic) 2##AB451455|MYLK3|91807|myosin light chain kinase 3##BC109096|MYLK3|91807|myosin light chain kinase 3##BC109097|MYLK3|91807|myosin light chain kinase 3##AJ247087|MYLK3|91807|myosin light chain kinase 3##NM_182493|MYLK3|91807|myosin light chain kinase 3	1.026909	denovo_WM_21:-47:0.925
chr1	36851663	36851777	reg1000449.p1	7.696	+	TSC_hg19_v1_chr1_-_36851517 AK075048	-197	-	AL834137 NM_032017 BC008344 TSC_hg19_v1_chr1_-_36851499 BC007835 AY198395	-229	-	TSC_hg19_v1_chr1_-_36817157 AK023810	-34546	-	AF394685 TSC_hg19_v1_chr1_-_36863508 AF166092 BC007623 NM_032881	11773	-	AB079075 AK098541 BC018069 NM_145047 NM_206837	64307	-	TSC_hg19_v1_chr1_-_36929984 AB049946 AB209905 AK021626 BC031336 AF265439 AK315441 AK302633 NM_031280	78239	-	AK075048|STK40|83931|serine/threonine kinase 40##AL834137|STK40|83931|serine/threonine kinase 40##NM_032017|STK40|83931|serine/threonine kinase 40##BC008344|STK40|83931|serine/threonine kinase 40##BC007835|STK40|83931|serine/threonine kinase 40##AY198395|STK40|83931|serine/threonine kinase 40##AF394685|LSM10|84967|LSM10, U7 small nuclear RNA associated##AF166092|LSM10|84967|LSM10, U7 small nuclear RNA associated##BC007623|LSM10|84967|LSM10, U7 small nuclear RNA associated##NM_032881|LSM10|84967|LSM10, U7 small nuclear RNA associated##AB079075|OSCP1|127700|organic solute carrier partner 1##AK098541|OSCP1|127700|organic solute carrier partner 1##BC018069|OSCP1|127700|organic solute carrier partner 1##NM_145047|OSCP1|127700|organic solute carrier partner 1##NM_206837|OSCP1|127700|organic solute carrier partner 1##AB049946|MRPS15|64960|mitochondrial ribosomal protein S15##AB209905|MRPS15|64960|mitochondrial ribosomal protein S15##AK021626|MRPS15|64960|mitochondrial ribosomal protein S15##BC031336|MRPS15|64960|mitochondrial ribosomal protein S15##AF265439|MRPS15|64960|mitochondrial ribosomal protein S15##AK315441|MRPS15|64960|mitochondrial ribosomal protein S15##AK302633|MRPS15|64960|mitochondrial ribosomal protein S15##NM_031280|MRPS15|64960|mitochondrial ribosomal protein S15	0.0	
chr3	121468615	121468775	reg1000477.p1	7.693	+	TSC_hg19_v1_chr3_-_121468589 BC065301 D25542 AB371588 AB593126 AK300437 NM_004487 X75304	-136	-	AK312750 TSC_hg19_v1_chr3_-_121379784 AK298663 NM_005335	-88919	-	X16663 BC016758 TSC_hg19_v1_chr3_-_121379751 AK298696 AK300301	-88969	-	TSC_hg19_v1_chr3_-_121553886 AY964668 BC005806 D25278 AY964667	85171	-	TSC_hg19_v1_chr3_-_121553908 AB062481 AY714228 NM_001023570 NM_001023571	85232	-	AF217516 NM_018456 TSC_hg19_v1_chr3_+_121554083 BC014589 AY049020 BC014209 AF517829 AK301560 AB528527 CU676923 DQ892648 DQ895887	85385	+	BC065301|GOLGB1|2804|golgin B1##D25542|GOLGB1|2804|golgin B1##AB371588|GOLGB1|2804|golgin B1##AB593126|GOLGB1|2804|golgin B1##AK300437|GOLGB1|2804|golgin B1##NM_004487|GOLGB1|2804|golgin B1##X75304|GOLGB1|2804|golgin B1##AK312750|HCLS1|3059|hematopoietic cell-specific Lyn substrate 1##AK298663|HCLS1|3059|hematopoietic cell-specific Lyn substrate 1##NM_005335|HCLS1|3059|hematopoietic cell-specific Lyn substrate 1##X16663|HCLS1|3059|hematopoietic cell-specific Lyn substrate 1##BC016758|HCLS1|3059|hematopoietic cell-specific Lyn substrate 1##AK298696|HCLS1|3059|hematopoietic cell-specific Lyn substrate 1##AK300301|HCLS1|3059|hematopoietic cell-specific Lyn substrate 1##AY964668|IQCB1|9657|IQ motif containing B1##BC005806|IQCB1|9657|IQ motif containing B1##D25278|IQCB1|9657|IQ motif containing B1##AY964667|IQCB1|9657|IQ motif containing B1##AB062481|IQCB1|9657|IQ motif containing B1##AY714228|IQCB1|9657|IQ motif containing B1##NM_001023570|IQCB1|9657|IQ motif containing B1##NM_001023571|IQCB1|9657|IQ motif containing B1##AF217516|EAF2|55840|ELL associated factor 2##NM_018456|EAF2|55840|ELL associated factor 2##BC014589|EAF2|55840|ELL associated factor 2##AY049020|EAF2|55840|ELL associated factor 2##BC014209|EAF2|55840|ELL associated factor 2##AF517829|EAF2|55840|ELL associated factor 2##AK301560|EAF2|55840|ELL associated factor 2##DQ892648|EAF2|55840|ELL associated factor 2##DQ895887|EAF2|55840|ELL associated factor 2	1.597089	denovo_WM_21:20:0.757	denovo_WM_21:-60:0.840
chr3	61237165	61237298	reg1000582.p1	7.690	+	TSC_hg19_v1_chr3_-_61237083 BC057223 BC032336 U46922 AK289824 NM_001166243 NM_002012	-141	-	BC050317 TSC_hg19_v1_chr3_-_59035759	-2201471	-	BC075863 TSC_hg19_v1_chr3_-_59035746	-2201490	-	TSC_hg19_v1_chr3_+_61547242 BC036018 BC048961 NM_002841	309980	+	BC047734 TSC_hg19_v1_chr3_+_61547294	310055	+	L09247 AB385117 TSC_hg19_v1_chr3_+_61548071	310745	+	BC057223|FHIT|2272|fragile histidine triad gene##BC032336|FHIT|2272|fragile histidine triad gene##U46922|FHIT|2272|fragile histidine triad gene##AK289824|FHIT|2272|fragile histidine triad gene##NM_001166243|FHIT|2272|fragile histidine triad gene##NM_002012|FHIT|2272|fragile histidine triad gene##BC050317|C3orf67|200844|chromosome 3 open reading frame 67##BC075863|C3orf67|200844|chromosome 3 open reading frame 67##BC036018|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC048961|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##NM_002841|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC047734|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##L09247|PTPRG|5793|protein tyrosine phosphatase, receptor type, G	0.213789	
chr9	33473949	33474056	reg1000562.p1	7.687	+	TSC_hg19_v1_chr9_-_33473921 NM_022917 NM_139235	-72	-	TSC_hg19_v1_chr9_-_33473890 BC020450 AK026258 AK293969	-106	-	TSC_hg19_v1_chr9_-_33473861 BC030139	-149	-	NM_001244752	50408	+	TSC_hg19_v1_chr9_+_33624216 M62898	150216	+	AB298285 NM_001197097 NM_007343 AB528734 X71345 X72781 TSC_hg19_v1_chr9_+_33750676 BC030238 AY052783 AB298286 NM_001197098	276638	+	NM_022917|NOL6|65083|nucleolar protein family 6 (RNA-associated)##NM_139235|NOL6|65083|nucleolar protein family 6 (RNA-associated)##BC020450|NOL6|65083|nucleolar protein family 6 (RNA-associated)##AK026258|NOL6|65083|nucleolar protein family 6 (RNA-associated)##AK293969|NOL6|65083|nucleolar protein family 6 (RNA-associated)##BC030139|NOL6|65083|nucleolar protein family 6 (RNA-associated)##NM_001244752|ANKRD18B|441459|ankyrin repeat domain 18B##M62898|ANXA2P2|304|annexin A2 pseudogene 2##AB298285|PRSS3|5646|protease, serine, 3##NM_001197097|PRSS3|5646|protease, serine, 3##NM_007343|PRSS3|5646|protease, serine, 3##X71345|PRSS3|5646|protease, serine, 3##X72781|PRSS3|5646|protease, serine, 3##BC030238|PRSS3|5646|protease, serine, 3##AY052783|PRSS3|5646|protease, serine, 3##AB298286|PRSS3|5646|protease, serine, 3##NM_001197098|PRSS3|5646|protease, serine, 3	0.647183	denovo_WM_21:10:0.647
chr6_cox_hap2	3616635	3616777	reg1000382.p1	7.678	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.372645	denovo_WM_21:35:0.373
chr16	19078740	19078881	reg1000598.p1	7.675	+	TSC_hg19_v1_chr16_+_18995511 CR933669 NM_001160364	-83252	+	AK094664 NM_024847 TSC_hg19_v1_chr16_+_18995296 AY236498 BC047719 AY263165 BC036205 AK293874 CU690480	-83491	+	TSC_hg19_v1_chr16_-_18937724 NM_015092 AB061371	-141079	-	AK315470 NM_016138 TSC_hg19_v1_chr16_+_19078935 BC003185 AK024291	120	+	AF098948 TSC_hg19_v1_chr16_+_19078967 AK225115 AB528110 AM393051 AM393521	162	+	TSC_hg19_v1_chr16_+_19079232 AL136647 NM_001190983 BC043272	455	+	CR933669|TMC7|79905|transmembrane channel-like 7##NM_001160364|TMC7|79905|transmembrane channel-like 7##AK094664|TMC7|79905|transmembrane channel-like 7##NM_024847|TMC7|79905|transmembrane channel-like 7##AY236498|TMC7|79905|transmembrane channel-like 7##BC047719|TMC7|79905|transmembrane channel-like 7##AY263165|TMC7|79905|transmembrane channel-like 7##BC036205|TMC7|79905|transmembrane channel-like 7##AK293874|TMC7|79905|transmembrane channel-like 7##NM_015092|SMG1|23049|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)##AB061371|SMG1|23049|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)##AK315470|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##NM_016138|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##BC003185|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##AK024291|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##AF098948|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##AK225115|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##AM393051|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##AM393521|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##AL136647|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##NM_001190983|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##BC043272|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)	0.0	
chr9	78790132	78790222	reg1000360.p2	7.672	+	TSC_hg19_v1_chr9_+_78505588 NM_001190482 NM_006200 AK056202 AK225773 AK310862 AX805774 BC012064	-284542	+	TSC_hg19_v1_chr9_+_77703429 AK291511 AK222596 U63717 BC007459 AB528711 CU675669	-1086667	+	TSC_hg19_v1_chr9_+_77703406 NM_012383	-1086777	+	BC015473 TSC_hg19_v1_chr9_-_79009434 BC007069 AK002011 AK307079 AK315734 NM_018339	219214	-	AY196293 NM_001097634	266404	+	NM_001097633 NM_001490 TSC_hg19_v1_chr9_+_79074142 AY196294 AY196295 AL832647	283939	+	NM_001190482|PCSK5|5125|proprotein convertase subtilisin/kexin type 5##NM_006200|PCSK5|5125|proprotein convertase subtilisin/kexin type 5##AK056202|PCSK5|5125|proprotein convertase subtilisin/kexin type 5##AK225773|PCSK5|5125|proprotein convertase subtilisin/kexin type 5##AK310862|PCSK5|5125|proprotein convertase subtilisin/kexin type 5##BC012064|PCSK5|5125|proprotein convertase subtilisin/kexin type 5##AK291511|OSTF1|26578|osteoclast stimulating factor 1##AK222596|OSTF1|26578|osteoclast stimulating factor 1##U63717|OSTF1|26578|osteoclast stimulating factor 1##BC007459|OSTF1|26578|osteoclast stimulating factor 1##NM_012383|OSTF1|26578|osteoclast stimulating factor 1##BC007069|RFK|55312|riboflavin kinase##AK002011|RFK|55312|riboflavin kinase##AK307079|RFK|55312|riboflavin kinase##AK315734|RFK|55312|riboflavin kinase##NM_018339|RFK|55312|riboflavin kinase##AY196293|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2##NM_001097634|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2##NM_001097633|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2##NM_001490|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2##AY196294|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2##AY196295|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2##AL832647|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2	0.0	
chr1	44115600	44115757	reg1000607.p1	7.669	+	AK127007 TSC_hg19_v1_chr1_+_44064516	-51166	+	TSC_hg19_v1_chr1_+_43996556 AB621807 AB177856 NM_002840 NM_130440 Y00815 BC048768 AB177857 BC048416	-119074	+	TSC_hg19_v1_chr1_-_43919547 AK096244 AY037165 AY775560 NM_001190880 NM_001243526 NM_031207	-196075	-	TSC_hg19_v1_chr1_+_44115796 NM_014663	121	+	AK300039 TSC_hg19_v1_chr1_+_44115819	133	+	BC002558 TSC_hg19_v1_chr1_+_44115828 AB014577	166	+	AK127007|PTPRF|5792|protein tyrosine phosphatase, receptor type, F##AB177856|PTPRF|5792|protein tyrosine phosphatase, receptor type, F##NM_002840|PTPRF|5792|protein tyrosine phosphatase, receptor type, F##NM_130440|PTPRF|5792|protein tyrosine phosphatase, receptor type, F##Y00815|PTPRF|5792|protein tyrosine phosphatase, receptor type, F##BC048768|PTPRF|5792|protein tyrosine phosphatase, receptor type, F##AB177857|PTPRF|5792|protein tyrosine phosphatase, receptor type, F##BC048416|PTPRF|5792|protein tyrosine phosphatase, receptor type, F##AK096244|HYI|81888|hydroxypyruvate isomerase (putative)##AY037165|HYI|81888|hydroxypyruvate isomerase (putative)##AY775560|HYI|81888|hydroxypyruvate isomerase (putative)##NM_001190880|HYI|81888|hydroxypyruvate isomerase (putative)##NM_001243526|HYI|81888|hydroxypyruvate isomerase (putative)##NM_031207|HYI|81888|hydroxypyruvate isomerase (putative)##NM_014663|KDM4A|9682|lysine (K)-specific demethylase 4A##AK300039|KDM4A|9682|lysine (K)-specific demethylase 4A##BC002558|KDM4A|9682|lysine (K)-specific demethylase 4A##AB014577|KDM4A|9682|lysine (K)-specific demethylase 4A	1.574653	denovo_WM_21:71:0.924	denovo_WM_21:-72:0.598
chr15	83023675	83023798	reg1000585.p2	7.664	+	CR936602 NM_001164465	-5558	-	BC007811 TSC_hg19_v1_chr15_+_82944831 BC065260 AK311124 AK311170 AK026448	-78846	+	AK309746 AK310769 BC072390 TSC_hg19_v1_chr15_+_82944804 AK291684 AK309420 AK309732 AK307285	-78944	+	NM_198181 CR936812	75005	+	BC009407 BC020453 BC019899 BC071928 M13932 AB055777 AK311951 BC070222 BC022370 NM_001021 NM_001199057 BC062715	185500	-	BC035348 AK023265 AK301728 AF329403 NM_001079533 NM_001079534 NM_001079535	216799	-	CR936602|LOC643696|643696|uncharacterized LOC643696##NM_001164465|GOLGA6L10|647042|golgin A6 family-like 10##BC007811|AGSK1|80154|golgin subfamily A member 2-like##BC065260|AGSK1|80154|golgin subfamily A member 2-like##AK311124|AGSK1|80154|golgin subfamily A member 2-like##AK311170|AGSK1|80154|golgin subfamily A member 2-like##AK026448|AGSK1|80154|golgin subfamily A member 2-like##AK309746|AGSK1|80154|golgin subfamily A member 2-like##AK310769|AGSK1|80154|golgin subfamily A member 2-like##BC072390|AGSK1|80154|golgin subfamily A member 2-like##AK291684|AGSK1|80154|golgin subfamily A member 2-like##AK309420|AGSK1|80154|golgin subfamily A member 2-like##AK309732|AGSK1|80154|golgin subfamily A member 2-like##AK307285|AGSK1|80154|golgin subfamily A member 2-like##NM_198181|GOLGA6L9|440295|golgin A6 family-like 9##CR936812|GOLGA6L9|440295|golgin A6 family-like 9##BC009407|RPS17|6218|ribosomal protein S17##BC020453|RPS17|6218|ribosomal protein S17##BC019899|RPS17|6218|ribosomal protein S17##BC071928|RPS17|6218|ribosomal protein S17##M13932|RPS17|6218|ribosomal protein S17##AK311951|RPS17|6218|ribosomal protein S17##BC070222|RPS17|6218|ribosomal protein S17##BC022370|RPS17|6218|ribosomal protein S17##NM_001021|RPS17|6218|ribosomal protein S17##NM_001199057|RPS17L|100505503|ribosomal protein S17-like##BC062715|RPS17|6218|ribosomal protein S17##BC035348|CPEB1|64506|cytoplasmic polyadenylation element binding protein 1##AK023265|CPEB1|64506|cytoplasmic polyadenylation element binding protein 1##AK301728|CPEB1|64506|cytoplasmic polyadenylation element binding protein 1##AF329403|CPEB1|64506|cytoplasmic polyadenylation element binding protein 1##NM_001079533|CPEB1|64506|cytoplasmic polyadenylation element binding protein 1##NM_001079534|CPEB1|64506|cytoplasmic polyadenylation element binding protein 1##NM_001079535|CPEB1|64506|cytoplasmic polyadenylation element binding protein 1	0.139291	
chr19	46431084	46431197	reg1000574.p1	7.640	+	HQ258065 BC042883 NM_001029861 BC117484 BC117486	-13101	-	TSC_hg19_v1_chr19_-_46405872 BC044311 NM_001012643	-25234	-	AK223622 TSC_hg19_v1_chr19_-_46389398 AK315060 BC038222 NM_015649 AY278022 BC039002	-41778	-	TSC_hg19_v1_chr19_-_46476556 U70477 AF083898 NM_002516	45466	-	NM_001080402	67198	+	TSC_hg19_v1_chr19_+_46498724 GQ375050	67587	+	HQ258065|NANOS2|339345|nanos homolog 2 (Drosophila)##BC042883|NANOS2|339345|nanos homolog 2 (Drosophila)##NM_001029861|NANOS2|339345|nanos homolog 2 (Drosophila)##BC117484|NANOS2|339345|nanos homolog 2 (Drosophila)##BC117486|NANOS2|339345|nanos homolog 2 (Drosophila)##BC044311|MYPOP|339344|Myb-related transcription factor, partner of profilin##NM_001012643|MYPOP|339344|Myb-related transcription factor, partner of profilin##AK223622|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##AK315060|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##BC038222|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##NM_015649|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##AY278022|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##BC039002|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##U70477|NOVA2|4858|neuro-oncological ventral antigen 2##AF083898|NOVA2|4858|neuro-oncological ventral antigen 2##NM_002516|NOVA2|4858|neuro-oncological ventral antigen 2##NM_001080402|CCDC61|729440|coiled-coil domain containing 61##GQ375050|CCDC61|729440|coiled-coil domain containing 61	0.020729	
chr15	98503817	98503909	reg1001556.p1	7.638	+	TSC_hg19_v1_chr15_+_97326664 AY489187 NM_173499 BC066292 BC033979 BC112390	-1177191	+	NM_001145157	-1627295	+	AK316086 NM_001145156	-1628070	+	TSC_hg19_v1_chr15_+_98503932 AK290221 NM_183376	56	+	TSC_hg19_v1_chr15_+_98503952 BC028704 BC070100	88	+	AK097062 AK097062 NM_182562	553747	-	AY489187|SPATA8|145946|spermatogenesis associated 8##NM_173499|SPATA8|145946|spermatogenesis associated 8##BC066292|SPATA8|145946|spermatogenesis associated 8##BC033979|SPATA8|145946|spermatogenesis associated 8##BC112390|SPATA8|145946|spermatogenesis associated 8##NM_001145157|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AK316086|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145156|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AK290221|ARRDC4|91947|arrestin domain containing 4##NM_183376|ARRDC4|91947|arrestin domain containing 4##BC028704|ARRDC4|91947|arrestin domain containing 4##BC070100|ARRDC4|91947|arrestin domain containing 4##AK097062|FAM169B|283777|family with sequence similarity 169, member B##AK097062|FAM169B|283777|family with sequence similarity 169, member B##NM_182562|FAM169B|283777|family with sequence similarity 169, member B	0.244587	
chr17	80656630	80656722	reg1000327.p1	7.624	+	TSC_hg19_v1_chr17_-_80656575 BC035814 U05227 AB209711 BC018039 NM_006822	-142	-	TSC_hg19_v1_chr17_-_80606321 AK297477 BC000974 AM182326 AB464355 BC007838 NM_019613	-50393	-	TSC_hg19_v1_chr17_+_80477607 NM_004514	-179086	+	TSC_hg19_v1_chr17_+_80674622 NM_024619 AK293523 AK301958 AK315373 BC007611 AK022233 AL136631 AY360465 BC014408 AB385548 CU676977 CR533461	17930	+	TSC_hg19_v1_chr17_+_80693490 NM_022158 AK294871 BC042680 AJ404615 CU692116	36786	+	TSC_hg19_v1_chr17_+_80709949 BC003094 NM_005993 AB023205 AK293471 BC006364	53278	+	BC035814|RAB40B|10966|RAB40B, member RAS oncogene family##U05227|RAB40B|10966|RAB40B, member RAS oncogene family##AB209711|RAB40B|10966|RAB40B, member RAS oncogene family##BC018039|RAB40B|10966|RAB40B, member RAS oncogene family##NM_006822|RAB40B|10966|RAB40B, member RAS oncogene family##AK297477|WDR45L|56270|WDR45-like##BC000974|WDR45L|56270|WDR45-like##AM182326|WDR45L|56270|WDR45-like##BC007838|WDR45L|56270|WDR45-like##NM_019613|WDR45L|56270|WDR45-like##NM_004514|FOXK2|3607|forkhead box K2##NM_024619|FN3KRP|79672|fructosamine 3 kinase related protein##AK293523|FN3KRP|79672|fructosamine 3 kinase related protein##AK301958|FN3KRP|79672|fructosamine 3 kinase related protein##AK315373|FN3KRP|79672|fructosamine 3 kinase related protein##BC007611|FN3KRP|79672|fructosamine 3 kinase related protein##AK022233|FN3KRP|79672|fructosamine 3 kinase related protein##AL136631|FN3KRP|79672|fructosamine 3 kinase related protein##AY360465|FN3KRP|79672|fructosamine 3 kinase related protein##BC014408|FN3KRP|79672|fructosamine 3 kinase related protein##CR533461|FN3KRP|79672|fructosamine 3 kinase related protein##NM_022158|FN3K|64122|fructosamine 3 kinase##AK294871|FN3K|64122|fructosamine 3 kinase##BC042680|FN3K|64122|fructosamine 3 kinase##AJ404615|FN3K|64122|fructosamine 3 kinase##BC003094|TBCD|6904|tubulin folding cofactor D##NM_005993|TBCD|6904|tubulin folding cofactor D##AB023205|TBCD|6904|tubulin folding cofactor D##AK293471|TBCD|6904|tubulin folding cofactor D##BC006364|TBCD|6904|tubulin folding cofactor D	0.451303	denovo_WM_21:90:0.423
chrX	49047458	49047642	reg1000077.p1	7.619	+	TSC_hg19_v1_chrX_-_49042854 AK299407	-4696	-	TSC_hg19_v1_chrX_-_49042840 BT007423 CR457211 DQ891474 DQ894662 AB464065 AJ011654 NM_006150 AK300866 AK314788 BC002468 BC016856	-4760	-	NM_002668 TSC_hg19_v1_chrX_+_49028254 L09604 BC109066 AB591027	-19287	+	TSC_hg19_v1_chrX_+_49047887 CU687901	340	+	TSC_hg19_v1_chrX_-_49056653 AB464258 CU687900 AK313030 AK094376 AK295524 AK315953 BC064550 NM_003179	9132	-	AF067227 JF701915 AF201304 AJ224874 NM_005183	42251	-	AK299407|PRICKLE3|4007|prickle homolog 3 (Drosophila)##BT007423|PRICKLE3|4007|prickle homolog 3 (Drosophila)##CR457211|PRICKLE3|4007|prickle homolog 3 (Drosophila)##DQ891474|PRICKLE3|4007|prickle homolog 3 (Drosophila)##DQ894662|PRICKLE3|4007|prickle homolog 3 (Drosophila)##AJ011654|PRICKLE3|4007|prickle homolog 3 (Drosophila)##NM_006150|PRICKLE3|4007|prickle homolog 3 (Drosophila)##AK300866|PRICKLE3|4007|prickle homolog 3 (Drosophila)##AK314788|PRICKLE3|4007|prickle homolog 3 (Drosophila)##BC002468|PRICKLE3|4007|prickle homolog 3 (Drosophila)##BC016856|PRICKLE3|4007|prickle homolog 3 (Drosophila)##NM_002668|PLP2|5355|proteolipid protein 2 (colonic epithelium-enriched)##L09604|PLP2|5355|proteolipid protein 2 (colonic epithelium-enriched)##BC109066|PLP2|5355|proteolipid protein 2 (colonic epithelium-enriched)##AK313030|SYP|6855|synaptophysin##AK094376|SYP|6855|synaptophysin##AK295524|SYP|6855|synaptophysin##AK315953|SYP|6855|synaptophysin##BC064550|SYP|6855|synaptophysin##NM_003179|SYP|6855|synaptophysin##AF067227|CACNA1F|778|calcium channel, voltage-dependent, L type, alpha 1F subunit##JF701915|CACNA1F|778|calcium channel, voltage-dependent, L type, alpha 1F subunit##AF201304|CACNA1F|778|calcium channel, voltage-dependent, L type, alpha 1F subunit##AJ224874|CACNA1F|778|calcium channel, voltage-dependent, L type, alpha 1F subunit##NM_005183|CACNA1F|778|calcium channel, voltage-dependent, L type, alpha 1F subunit	2.269246	denovo_WM_21:45:0.508	denovo_WM_21:-58:0.596	denovo_WM_21:106:0.972
chr9	128003638	128003793	reg1000152.p1	7.617	+	TSC_hg19_v1_chr9_-_128003635 NM_005347	-1	-	TSC_hg19_v1_chr9_-_128003623 AK293604 X87949	-92	-	AF188611 AB527282 AF216292 DQ892173 DQ895368 AJ271729 TSC_hg19_v1_chr9_-_128003594 BC020235	-235	-	TSC_hg19_v1_chr9_+_128024074 AK294542	20362	+	TSC_hg19_v1_chr9_+_128024097 AK296381	20383	+	TSC_hg19_v1_chr9_+_128024104 BC110990	20389	+	NM_005347|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##AK293604|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##X87949|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##AF188611|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##AF216292|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##DQ892173|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##DQ895368|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##AJ271729|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##BC020235|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##AK294542|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##AK296381|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##BC110990|GAPVD1|26130|GTPase activating protein and VPS9 domains 1	0.709863	denovo_WM_21:2:0.558
chr11	75525942	75526126	reg1000196.p1	7.606	+	TSC_hg19_v1_chr11_+_75479822 AB048286 AY780646 AY358532 AL834287 AF384161 CU677247 AY780647	-46111	+	TSC_hg19_v1_chr11_+_75479774 NM_032564 BC015234	-46257	+	AK026297 AK291998 AY157608 BC103876 BC103877 BC103878 NM_025098	-97136	+	NM_003369 TSC_hg19_v1_chr11_+_75526233 AK291011	188	+	TSC_hg19_v1_chr11_+_75526254 BC013176 AB012958 BC064837 AK222772	244	+	AB590784 BT019492 BC074790 BC074791 BC113386 BC113388 AB070218 NM_004626 Y12692 AK313570	391478	-	AB048286|DGAT2|84649|diacylglycerol O-acyltransferase 2##AY358532|DGAT2|84649|diacylglycerol O-acyltransferase 2##AL834287|DGAT2|84649|diacylglycerol O-acyltransferase 2##AF384161|DGAT2|84649|diacylglycerol O-acyltransferase 2##AY780647|DGAT2|84649|diacylglycerol O-acyltransferase 2##NM_032564|DGAT2|84649|diacylglycerol O-acyltransferase 2##BC015234|DGAT2|84649|diacylglycerol O-acyltransferase 2##AK026297|MOGAT2|80168|monoacylglycerol O-acyltransferase 2##AK291998|MOGAT2|80168|monoacylglycerol O-acyltransferase 2##AY157608|MOGAT2|80168|monoacylglycerol O-acyltransferase 2##BC103876|MOGAT2|80168|monoacylglycerol O-acyltransferase 2##BC103877|MOGAT2|80168|monoacylglycerol O-acyltransferase 2##BC103878|MOGAT2|80168|monoacylglycerol O-acyltransferase 2##NM_025098|MOGAT2|80168|monoacylglycerol O-acyltransferase 2##NM_003369|UVRAG|7405|UV radiation resistance associated gene##AK291011|UVRAG|7405|UV radiation resistance associated gene##BC013176|UVRAG|7405|UV radiation resistance associated gene##AB012958|UVRAG|7405|UV radiation resistance associated gene##BC064837|UVRAG|7405|UV radiation resistance associated gene##AK222772|UVRAG|7405|UV radiation resistance associated gene##BT019492|WNT11|7481|wingless-type MMTV integration site family, member 11##BC074790|WNT11|7481|wingless-type MMTV integration site family, member 11##BC074791|WNT11|7481|wingless-type MMTV integration site family, member 11##BC113386|WNT11|7481|wingless-type MMTV integration site family, member 11##BC113388|WNT11|7481|wingless-type MMTV integration site family, member 11##AB070218|WNT11|7481|wingless-type MMTV integration site family, member 11##NM_004626|WNT11|7481|wingless-type MMTV integration site family, member 11##Y12692|WNT11|7481|wingless-type MMTV integration site family, member 11##AK313570|WNT11|7481|wingless-type MMTV integration site family, member 11	0.010977	
chr1	23670842	23670994	reg1000544.p1	7.604	+	TSC_hg19_v1_chr1_-_23670794 BX647784 AF000364 AK297405 AK311519 AK297382 BC110389 AK300029 BX640912 BC001449 AK313142 NM_001102397 NM_001102398 NM_001102399 NM_005826	-100	-	BC007720 NM_000864	-149697	-	TSC_hg19_v1_chr1_-_23504281 AK093016 AX747858	-166632	-	CU691148 EU446536 TSC_hg19_v1_chr1_-_23694804 AK308173 BC056400 AK092364 AX747503 AL834485 NM_030634	23780	-	TSC_hg19_v1_chr1_+_23695456 BC054115 BC068594 AK074989	24577	+	TSC_hg19_v1_chr1_-_23696358 NM_001077195	25394	-	BX647784|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##AF000364|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##AK297405|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##AK311519|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##AK297382|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##BC110389|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##AK300029|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##BX640912|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##BC001449|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##AK313142|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##NM_001102397|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##NM_001102398|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##NM_001102399|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##NM_005826|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##BC007720|HTR1D|3352|5-hydroxytryptamine (serotonin) receptor 1D##NM_000864|HTR1D|3352|5-hydroxytryptamine (serotonin) receptor 1D##AK093016|LUZP1|7798|leucine zipper protein 1##EU446536|ZNF436|80818|zinc finger protein 436##AK308173|ZNF436|80818|zinc finger protein 436##BC056400|ZNF436|80818|zinc finger protein 436##AK092364|ZNF436|80818|zinc finger protein 436##AL834485|ZNF436|80818|zinc finger protein 436##NM_030634|ZNF436|80818|zinc finger protein 436##BC054115|C1orf213|148898|chromosome 1 open reading frame 213##BC068594|C1orf213|148898|chromosome 1 open reading frame 213##AK074989|C1orf213|148898|chromosome 1 open reading frame 213##NM_001077195|ZNF436|80818|zinc finger protein 436	1.214186	denovo_WM_21:47:0.352	denovo_WM_21:72:0.862
chr17	45177654	45177785	reg1000523.p1	7.600	+	BC108690 BC033942 NM_203400	-121119	-	TSC_hg19_v1_chr17_+_45000525 AK303650 AK290890 BC009710 AF229796 BC034762 CU679451 AF007548 DQ891461 DQ894638	-177174	+	TSC_hg19_v1_chr17_+_45000492 NM_001012511 NM_004287 NM_054022	-177232	+	CU679998 AB384784 DQ892780 DQ896027 BC011656 DQ786193 TSC_hg19_v1_chr17_-_45266619 U00001 AK296881 S78234	88859	-	TSC_hg19_v1_chr17_-_45266641 AK299342	88920	-	NM_001114091 NM_001256 TSC_hg19_v1_chr17_-_45266669	88965	-	BC108690|RPRML|388394|reprimo-like##BC033942|RPRML|388394|reprimo-like##NM_203400|RPRML|388394|reprimo-like##AK290890|GOSR2|9570|golgi SNAP receptor complex member 2##BC009710|GOSR2|9570|golgi SNAP receptor complex member 2##AF229796|GOSR2|9570|golgi SNAP receptor complex member 2##BC034762|GOSR2|9570|golgi SNAP receptor complex member 2##AF007548|GOSR2|9570|golgi SNAP receptor complex member 2##DQ891461|GOSR2|9570|golgi SNAP receptor complex member 2##DQ894638|GOSR2|9570|golgi SNAP receptor complex member 2##NM_001012511|GOSR2|9570|golgi SNAP receptor complex member 2##NM_004287|GOSR2|9570|golgi SNAP receptor complex member 2##NM_054022|GOSR2|9570|golgi SNAP receptor complex member 2##DQ892780|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##DQ896027|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##BC011656|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##DQ786193|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##U00001|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##AK296881|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##S78234|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##AK299342|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##NM_001114091|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##NM_001256|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)	0.877618	denovo_WM_21:-31:0.878
chr5	139781303	139781400	reg1000053.p2	7.600	+	TSC_hg19_v1_chr5_-_139781027 BC030152	-310	-	TSC_hg19_v1_chr5_-_139780719 BC079833	-634	-	AF332961 NM_031467 AF336237 BC136262 BC143602 AF313465 AB032762	-41545	+	TSC_hg19_v1_chr5_+_139781398 NM_001197030 NM_017747 NM_017978 NM_020690 NM_024668	46	+	TSC_hg19_v1_chr5_+_139781428 AK098574 AK074173 AF258557	82	+	TSC_hg19_v1_chr5_+_139781454 BC004457 BC009909 BC144623	108	+	AF332961|SLC4A9|83697|solute carrier family 4, sodium bicarbonate cotransporter, member 9##NM_031467|SLC4A9|83697|solute carrier family 4, sodium bicarbonate cotransporter, member 9##AF336237|SLC4A9|83697|solute carrier family 4, sodium bicarbonate cotransporter, member 9##BC136262|SLC4A9|83697|solute carrier family 4, sodium bicarbonate cotransporter, member 9##BC143602|SLC4A9|83697|solute carrier family 4, sodium bicarbonate cotransporter, member 9##AF313465|SLC4A9|83697|solute carrier family 4, sodium bicarbonate cotransporter, member 9##AB032762|SLC4A9|83697|solute carrier family 4, sodium bicarbonate cotransporter, member 9##NM_001197030|ANKHD1|54882|ankyrin repeat and KH domain containing 1##NM_017747|ANKHD1|54882|ankyrin repeat and KH domain containing 1##NM_017978|ANKHD1|54882|ankyrin repeat and KH domain containing 1##NM_020690|ANKHD1-EIF4EBP3|404734|ANKHD1-EIF4EBP3 readthrough##NM_024668|ANKHD1|54882|ankyrin repeat and KH domain containing 1##AK098574|ANKHD1|54882|ankyrin repeat and KH domain containing 1##AK074173|ANKHD1|54882|ankyrin repeat and KH domain containing 1##AF258557|ANKHD1|54882|ankyrin repeat and KH domain containing 1##BC004457|ANKHD1|54882|ankyrin repeat and KH domain containing 1##BC009909|ANKHD1|54882|ankyrin repeat and KH domain containing 1##BC144623|ANKHD1-EIF4EBP3|404734|ANKHD1-EIF4EBP3 readthrough	0.01057	
chr2	44395759	44395944	reg1000082.p3	7.595	+	TSC_hg19_v1_chr2_-_44223145 BC130285 AY289212 NM_133259	-172712	-	BC026034 TSC_hg19_v1_chr2_-_44223116	-172733	-	AK299869 TSC_hg19_v1_chr2_-_44223114 AK125781 AK290016 AK308348	-172738	-	TSC_hg19_v1_chr2_+_44396013 NM_001033556 NM_001033557 NM_002706 NM_177968 NM_177969 AK056009 AK291214 DQ023508 DQ023509 DQ023510 DQ023511 BC064381 AJ271832 AJ271835 BC012002	164	+	TSC_hg19_v1_chr2_+_44396066 AL833035	259	+	NM_000341 BC022386 AK309145 AK313157 AB033549 AK091932 AK289636 L11696 M95548 AK223146 BC093624 BC093626 D82326 CU692594 DQ892031 DQ895222 DQ023513 DQ023515 DQ023516 DQ023517	106784	+	BC130285|LRPPRC|10128|leucine-rich PPR-motif containing##AY289212|LRPPRC|10128|leucine-rich PPR-motif containing##NM_133259|LRPPRC|10128|leucine-rich PPR-motif containing##BC026034|LRPPRC|10128|leucine-rich PPR-motif containing##AK299869|LRPPRC|10128|leucine-rich PPR-motif containing##AK125781|LRPPRC|10128|leucine-rich PPR-motif containing##AK290016|LRPPRC|10128|leucine-rich PPR-motif containing##AK308348|LRPPRC|10128|leucine-rich PPR-motif containing##NM_001033556|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_001033557|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_002706|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_177968|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_177969|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AK056009|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AK291214|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023508|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023509|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023510|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023511|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC064381|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AJ271832|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AJ271835|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC012002|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AL833035|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_000341|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC022386|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK309145|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK313157|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AB033549|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK091932|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK289636|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##L11696|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##M95548|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK223146|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC093624|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC093626|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ892031|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ895222|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023513|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023515|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023516|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023517|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1	0.053901	
chr11	133826920	133827031	reg1000478.p1	7.594	+	NM_014987 TSC_hg19_v1_chr11_-_133826886	-93	-	AF521713 AK098717 NM_174927 BC058039	-111594	-	AK315859 AK315859 TSC_hg19_v1_chr11_-_133402298 BX537377 NM_001012393	-424661	-	AJ416101 NM_001205329 NM_032801 AY358335 TSC_hg19_v1_chr11_+_133938938 AK074769 AF448478	111906	+	AK075309 AK125071 AK225666 TSC_hg19_v1_chr11_+_133938965 BC057284 AJ344431 AF356518 BC012147 BC010690	111997	+	TSC_hg19_v1_chr11_-_134093862 D29954	266871	-	NM_014987|IGSF9B|22997|immunoglobulin superfamily, member 9B##AF521713|SPATA19|219938|spermatogenesis associated 19##AK098717|SPATA19|219938|spermatogenesis associated 19##NM_174927|SPATA19|219938|spermatogenesis associated 19##BC058039|SPATA19|219938|spermatogenesis associated 19##AK315859|OPCML|4978|opioid binding protein/cell adhesion molecule-like##AK315859|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BX537377|OPCML|4978|opioid binding protein/cell adhesion molecule-like##NM_001012393|OPCML|4978|opioid binding protein/cell adhesion molecule-like##AJ416101|JAM3|83700|junctional adhesion molecule 3##NM_001205329|JAM3|83700|junctional adhesion molecule 3##NM_032801|JAM3|83700|junctional adhesion molecule 3##AY358335|JAM3|83700|junctional adhesion molecule 3##AK074769|JAM3|83700|junctional adhesion molecule 3##AF448478|JAM3|83700|junctional adhesion molecule 3##AK075309|JAM3|83700|junctional adhesion molecule 3##AK125071|JAM3|83700|junctional adhesion molecule 3##AK225666|JAM3|83700|junctional adhesion molecule 3##BC057284|JAM3|83700|junctional adhesion molecule 3##AJ344431|JAM3|83700|junctional adhesion molecule 3##AF356518|JAM3|83700|junctional adhesion molecule 3##BC012147|JAM3|83700|junctional adhesion molecule 3##BC010690|JAM3|83700|junctional adhesion molecule 3##D29954|NCAPD3|23310|non-SMC condensin II complex, subunit D3	0.218987	denovo_WM_21:0:0.208
chr9	140135400	140135505	reg1000020.p1	7.589	+	AK095999 NM_080877	-10068	+	BC029942 NM_001177316 NM_001177317	-10244	+	NM_001190228	-13435	+	TSC_hg19_v1_chr9_+_140135712 NM_006088	256	+	AK000560 AK021414 AK026594 AK026609 AK298087 BC029529 TSC_hg19_v1_chr9_+_140135738 AK026167 BX648521	286	+	TSC_hg19_v1_chr9_+_140135744 AK098686 BC019829 BC004188 BC012835 AF064849 BC002783 BC039175 BC002885 BC019359 BC007889 BC024038 BC071889 BC001911 AB590760 CU691670 AY167990	325	+	AK095999|SLC34A3|142680|solute carrier family 34 (sodium phosphate), member 3##NM_080877|SLC34A3|142680|solute carrier family 34 (sodium phosphate), member 3##BC029942|SLC34A3|142680|solute carrier family 34 (sodium phosphate), member 3##NM_001177316|SLC34A3|142680|solute carrier family 34 (sodium phosphate), member 3##NM_001177317|SLC34A3|142680|solute carrier family 34 (sodium phosphate), member 3##NM_001190228|RNF224|643596|ring finger protein 224##NM_006088|TUBB4B|10383|tubulin, beta 4B class IVb##AK000560|TUBB4B|10383|tubulin, beta 4B class IVb##AK021414|TUBB4B|10383|tubulin, beta 4B class IVb##AK026594|TUBB4B|10383|tubulin, beta 4B class IVb##AK026609|TUBB4B|10383|tubulin, beta 4B class IVb##AK298087|TUBB4B|10383|tubulin, beta 4B class IVb##BC029529|TUBB4B|10383|tubulin, beta 4B class IVb##AK026167|TUBB4B|10383|tubulin, beta 4B class IVb##BX648521|TUBB4B|10383|tubulin, beta 4B class IVb##AK098686|TUBB4B|10383|tubulin, beta 4B class IVb##BC019829|TUBB4B|10383|tubulin, beta 4B class IVb##BC004188|TUBB4B|10383|tubulin, beta 4B class IVb##BC012835|TUBB4B|10383|tubulin, beta 4B class IVb##BC002783|TUBB4B|10383|tubulin, beta 4B class IVb##BC039175|TUBB4B|10383|tubulin, beta 4B class IVb##BC002885|TUBB4B|10383|tubulin, beta 4B class IVb##BC019359|TUBB4B|10383|tubulin, beta 4B class IVb##BC007889|TUBB4B|10383|tubulin, beta 4B class IVb##BC024038|TUBB4B|10383|tubulin, beta 4B class IVb##BC071889|TUBB4B|10383|tubulin, beta 4B class IVb##BC001911|TUBB4B|10383|tubulin, beta 4B class IVb##AY167990|TUBB4B|10383|tubulin, beta 4B class IVb	0.241568	denovo_WM_21:25:0.242
chr1	214776403	214776531	reg1000506.p2	7.587	+	TSC_hg19_v1_chr1_-_214724977 NM_005401	-51469	-	TSC_hg19_v1_chr1_-_214724946 AK298120 BX538306 AK291641	-51568	-	X82676 TSC_hg19_v1_chr1_-_214724620 BC017300 AK090596	-51860	-	TSC_hg19_v1_chr1_+_214776547 NM_016343 U19769 AK307690	54	+	TSC_hg19_v1_chr1_+_214776585 U30872	151	+	NM_001017424	402417	+	NM_005401|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##AK298120|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##AK291641|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##X82676|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##BC017300|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##AK090596|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##NM_016343|CENPF|1063|centromere protein F, 350/400kDa (mitosin)##U19769|CENPF|1063|centromere protein F, 350/400kDa (mitosin)##AK307690|CENPF|1063|centromere protein F, 350/400kDa (mitosin)##U30872|CENPF|1063|centromere protein F, 350/400kDa (mitosin)##NM_001017424|KCNK2|3776|potassium channel, subfamily K, member 2	0.992949	denovo_WM_21:-18:0.238	denovo_WM_21:42:0.641
chr12	113659130	113659244	reg1000075.p2	7.574	+	TSC_hg19_v1_chr12_-_113658844 BC013151 NM_138451 AK127152	-325	-	AK075358 AK123762 AK027741 TSC_hg19_v1_chr12_+_113623525 AY007158 AK027733 NM_032848 AK222908	-35714	+	BC005848 BC001132 BC001848 AY148094 TSC_hg19_v1_chr12_-_113623279 AF478457 NM_001111322 NM_024072	-35940	-	TSC_hg19_v1_chr12_+_113659268 AK093490 AX748162 NM_001143819 NM_017901 AY083666	56	+	AB032995 BC152423 TSC_hg19_v1_chr12_+_113659278 BC136795 BC136796	93	+	TSC_hg19_v1_chr12_+_113659290 BC142664 AK057414 BC150203	116	+	BC013151|IQCD|115811|IQ motif containing D##NM_138451|IQCD|115811|IQ motif containing D##AK127152|IQCD|115811|IQ motif containing D##AK075358|C12orf52|84934|chromosome 12 open reading frame 52##AK123762|C12orf52|84934|chromosome 12 open reading frame 52##AK027741|C12orf52|84934|chromosome 12 open reading frame 52##AY007158|C12orf52|84934|chromosome 12 open reading frame 52##AK027733|C12orf52|84934|chromosome 12 open reading frame 52##NM_032848|C12orf52|84934|chromosome 12 open reading frame 52##AK222908|C12orf52|84934|chromosome 12 open reading frame 52##BC005848|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##BC001132|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##BC001848|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##AY148094|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##AF478457|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##NM_001111322|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##NM_024072|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##AK093490|TPCN1|53373|two pore segment channel 1##NM_001143819|TPCN1|53373|two pore segment channel 1##NM_017901|TPCN1|53373|two pore segment channel 1##AY083666|TPCN1|53373|two pore segment channel 1##AB032995|TPCN1|53373|two pore segment channel 1##BC152423|TPCN1|53373|two pore segment channel 1##BC136795|TPCN1|53373|two pore segment channel 1##BC136796|TPCN1|53373|two pore segment channel 1##BC142664|TPCN1|53373|two pore segment channel 1##AK057414|TPCN1|53373|two pore segment channel 1##BC150203|TPCN1|53373|two pore segment channel 1	0.987822	denovo_WM_21:-18:0.988
chr6	15246089	15246199	reg1000300.p2	7.573	+	TSC_hg19_v1_chr6_+_15245702 AK302624	-427	+	AK223315 AK290426 TSC_hg19_v1_chr6_+_14118002 AK307059 AK309541 DQ892356 DQ895563 Z11697 CU689036 BT019498 CR457019	-1128122	+	TSC_hg19_v1_chr6_+_14117869 NM_001040280 NM_004233 BC030830 BC004351	-1128239	+	TSC_hg19_v1_chr6_+_15246300 AK292861 BC046246 NM_004973 U57592	268	+	BC033996 TSC_hg19_v1_chr6_-_15248900	2757	-	TSC_hg19_v1_chr6_+_15249113 AK303610	2969	+	AK302624|JARID2|3720|jumonji, AT rich interactive domain 2##AK223315|CD83|9308|CD83 molecule##AK290426|CD83|9308|CD83 molecule##AK307059|CD83|9308|CD83 molecule##AK309541|CD83|9308|CD83 molecule##DQ892356|CD83|9308|CD83 molecule##DQ895563|CD83|9308|CD83 molecule##Z11697|CD83|9308|CD83 molecule##BT019498|CD83|9308|CD83 molecule##CR457019|CD83|9308|CD83 molecule##NM_001040280|CD83|9308|CD83 molecule##NM_004233|CD83|9308|CD83 molecule##BC030830|CD83|9308|CD83 molecule##BC004351|CD83|9308|CD83 molecule##AK292861|JARID2|3720|jumonji, AT rich interactive domain 2##BC046246|JARID2|3720|jumonji, AT rich interactive domain 2##NM_004973|JARID2|3720|jumonji, AT rich interactive domain 2##U57592|JARID2|3720|jumonji, AT rich interactive domain 2##AK303610|JARID2|3720|jumonji, AT rich interactive domain 2	0.981186	denovo_WM_21:80:0.981
chr17	27139531	27139631	reg1000412.p1	7.571	+	TSC_hg19_v1_chr17_-_27139467 AK095569	-134	-	TSC_hg19_v1_chr17_+_27071025 NM_004295 BC001769 X80200 AK300804 AY937222 AY937223 AY937224 AY937225 AB529167 DQ892825 DQ896071 CU674876 AF082185	-68512	+	BC112240 BC113705 AK301429 AY242354 AY267371 HQ258347 NM_178170	-83767	+	BC021228 TSC_hg19_v1_chr17_-_27169811 BX647766 AK299477 AK001562 AK057665 NM_001077498 NM_018182	30209	-	TSC_hg19_v1_chr17_+_27182033 AB049388 AK023342 AY007435 BX537542 BC019094 NM_005702 CU676380 DQ892626 DQ895866 AF082657 AF082658	42442	+	M60922 CU678570 AB528533 BC003683 TSC_hg19_v1_chr17_-_27224641	85027	-	AK095569|C17orf63|55731|chromosome 17 open reading frame 63##NM_004295|TRAF4|9618|TNF receptor-associated factor 4##BC001769|TRAF4|9618|TNF receptor-associated factor 4##X80200|TRAF4|9618|TNF receptor-associated factor 4##AK300804|TRAF4|9618|TNF receptor-associated factor 4##AY937222|TRAF4|9618|TNF receptor-associated factor 4##AY937223|TRAF4|9618|TNF receptor-associated factor 4##AY937224|TRAF4|9618|TNF receptor-associated factor 4##DQ892825|TRAF4|9618|TNF receptor-associated factor 4##DQ896071|TRAF4|9618|TNF receptor-associated factor 4##AF082185|TRAF4|9618|TNF receptor-associated factor 4##BC112240|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##BC113705|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##AK301429|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##AY242354|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##AY267371|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##HQ258347|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##NM_178170|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##BC021228|C17orf63|55731|chromosome 17 open reading frame 63##BX647766|C17orf63|55731|chromosome 17 open reading frame 63##AK299477|C17orf63|55731|chromosome 17 open reading frame 63##AK001562|C17orf63|55731|chromosome 17 open reading frame 63##AK057665|C17orf63|55731|chromosome 17 open reading frame 63##NM_001077498|C17orf63|55731|chromosome 17 open reading frame 63##NM_018182|C17orf63|55731|chromosome 17 open reading frame 63##AB049388|ERAL1|26284|Era G-protein-like 1 (E. coli)##AK023342|ERAL1|26284|Era G-protein-like 1 (E. coli)##AY007435|ERAL1|26284|Era G-protein-like 1 (E. coli)##BX537542|ERAL1|26284|Era G-protein-like 1 (E. coli)##BC019094|ERAL1|26284|Era G-protein-like 1 (E. coli)##NM_005702|ERAL1|26284|Era G-protein-like 1 (E. coli)##DQ892626|ERAL1|26284|Era G-protein-like 1 (E. coli)##DQ895866|ERAL1|26284|Era G-protein-like 1 (E. coli)##AF082657|ERAL1|26284|Era G-protein-like 1 (E. coli)##AF082658|ERAL1|26284|Era G-protein-like 1 (E. coli)##M60922|FLOT2|2319|flotillin 2##BC003683|FLOT2|2319|flotillin 2	0.305027	denovo_WM_21:-35:0.305
chr19	21950392	21950507	reg1000644.p2	7.570	+	BC035579 TSC_hg19_v1_chr19_-_21950382 AK308798 AK126551 NM_173531	-74	-	TSC_hg19_v1_chr19_+_21688403 AK308708 NM_001001415 AF325191 AY269786	-262024	+	CR627135 TSC_hg19_v1_chr19_-_21646716	-303744	-	TSC_hg19_v1_chr19_-_22018985 M61869 NM_003423 BC006528	68532	-	X59244 AK291353 CR933640 TSC_hg19_v1_chr19_-_22034868	84382	-	BC038199 AK096236 NM_007153 AX721110	243286	-	BC035579|ZNF100|163227|zinc finger protein 100##AK308798|ZNF100|163227|zinc finger protein 100##AK126551|ZNF100|163227|zinc finger protein 100##NM_173531|ZNF100|163227|zinc finger protein 100##AK308708|ZNF429|353088|zinc finger protein 429##NM_001001415|ZNF429|353088|zinc finger protein 429##AF325191|ZNF429|353088|zinc finger protein 429##AY269786|ZNF429|353088|zinc finger protein 429##M61869|ZNF43|7594|zinc finger protein 43##NM_003423|ZNF43|7594|zinc finger protein 43##BC006528|ZNF43|7594|zinc finger protein 43##X59244|ZNF43|7594|zinc finger protein 43##AK291353|ZNF43|7594|zinc finger protein 43##CR933640|ZNF43|7594|zinc finger protein 43##BC038199|ZNF208|7757|zinc finger protein 208##AK096236|ZNF208|7757|zinc finger protein 208##NM_007153|ZNF208|7757|zinc finger protein 208	0.064018	
chr6	43142436	43142590	reg1000530.p1	7.567	+	TSC_hg19_v1_chr6_+_43139204 AB209128 AB464198	-3220	+	TSC_hg19_v1_chr6_+_43139192 BC048211	-3320	+	NM_003131 TSC_hg19_v1_chr6_+_43139027 BC052572 J03161	-3460	+	TSC_hg19_v1_chr6_+_43149918 AK125228 CR749511 NM_015089 CR749841	7401	+	TSC_hg19_v1_chr6_+_43149926 BC028159	7424	+	TSC_hg19_v1_chr6_-_43197220 BC011683 AF040105 NM_006443 NM_199184 EU585603	54686	-	AB209128|SRF|6722|serum response factor (c-fos serum response element-binding transcription factor)##BC048211|SRF|6722|serum response factor (c-fos serum response element-binding transcription factor)##NM_003131|SRF|6722|serum response factor (c-fos serum response element-binding transcription factor)##BC052572|SRF|6722|serum response factor (c-fos serum response element-binding transcription factor)##J03161|SRF|6722|serum response factor (c-fos serum response element-binding transcription factor)##AK125228|CUL9|23113|cullin 9##CR749511|CUL9|23113|cullin 9##NM_015089|CUL9|23113|cullin 9##CR749841|CUL9|23113|cullin 9##BC028159|CUL9|23113|cullin 9##BC011683|C6orf108|10591|chromosome 6 open reading frame 108##AF040105|C6orf108|10591|chromosome 6 open reading frame 108##NM_006443|C6orf108|10591|chromosome 6 open reading frame 108##NM_199184|C6orf108|10591|chromosome 6 open reading frame 108##EU585603|C6orf108|10591|chromosome 6 open reading frame 108	0.955968	denovo_WM_21:-45:0.946
chr9	133588098	133588240	reg1000603.p2	7.551	+	TSC_hg19_v1_chr9_+_133569166 AK001916 AK296605 NM_014285 AK022460 AK090512 AK303163 BC000747 DQ892753 EU176744 AB463621	-19005	+	AY004252 NM_021619	-48189	+	TSC_hg19_v1_chr9_+_133455030 BC007874	-133144	+	NM_007313 AB209642 M14753	1150	+	TSC_hg19_v1_chr9_+_133710665 M30833 X16416	122498	+	TSC_hg19_v1_chr9_+_133710748 M14754 NM_005157	122619	+	AK001916|EXOSC2|23404|exosome component 2##AK296605|EXOSC2|23404|exosome component 2##NM_014285|EXOSC2|23404|exosome component 2##AK022460|EXOSC2|23404|exosome component 2##AK090512|EXOSC2|23404|exosome component 2##AK303163|EXOSC2|23404|exosome component 2##BC000747|EXOSC2|23404|exosome component 2##DQ892753|EXOSC2|23404|exosome component 2##EU176744|EXOSC2|23404|exosome component 2##AY004252|PRDM12|59335|PR domain containing 12##NM_021619|PRDM12|59335|PR domain containing 12##BC007874|FUBP3|8939|far upstream element (FUSE) binding protein 3##NM_007313|ABL1|25|c-abl oncogene 1, non-receptor tyrosine kinase##AB209642|ABL1|25|c-abl oncogene 1, non-receptor tyrosine kinase##M14753|ABL1|25|c-abl oncogene 1, non-receptor tyrosine kinase##M30833|ABL1|25|c-abl oncogene 1, non-receptor tyrosine kinase##X16416|ABL1|25|c-abl oncogene 1, non-receptor tyrosine kinase##M14754|ABL1|25|c-abl oncogene 1, non-receptor tyrosine kinase##NM_005157|ABL1|25|c-abl oncogene 1, non-receptor tyrosine kinase	0.710223	denovo_WM_21:26:0.647
chr5	96144078	96144187	reg1000452.p1	7.548	+	TSC_hg19_v1_chr5_-_96143701 NM_001040458 NM_016442	-342	-	TSC_hg19_v1_chr5_-_96143614 AF106037 AF183569 AF222340 AY358590 AK291636 AY028806 AY028807	-510	-	NM_173060 AL832349 AB026049 AK303900 TSC_hg19_v1_chr5_+_96038509 AK298541 AK299402 AK300624 AK314290 AK315146 AL832174 BX648397 AK303836 AK297879	-105597	+	AK310535 BC030775 NM_001198541	5693	-	NM_001130140 NM_022350 AK074281	67534	+	TSC_hg19_v1_chr5_+_96212203 AK312864 AB109031 AB163917 BC065240	68056	+	NM_001040458|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##NM_016442|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AF106037|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AF183569|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AF222340|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AY358590|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AK291636|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AY028806|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AY028807|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##NM_173060|CAST|831|calpastatin##AL832349|CAST|831|calpastatin##AB026049|CAST|831|calpastatin##AK303900|CAST|831|calpastatin##AK298541|CAST|831|calpastatin##AK299402|CAST|831|calpastatin##AK300624|CAST|831|calpastatin##AK314290|CAST|831|calpastatin##AK315146|CAST|831|calpastatin##AL832174|CAST|831|calpastatin##BX648397|CAST|831|calpastatin##AK303836|CAST|831|calpastatin##AK297879|CAST|831|calpastatin##AK310535|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##BC030775|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##NM_001198541|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##NM_001130140|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##NM_022350|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##AK074281|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##AK312864|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##AB109031|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##AB163917|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##BC065240|ERAP2|64167|endoplasmic reticulum aminopeptidase 2	0.464667	denovo_WM_21:-16:0.465
chr3	100211317	100211445	reg1000586.p1	7.547	+	BC052994 BC065555 NM_014820 AK302796	-91128	-	BC040562 NM_001085451	-91345	+	AB018262 BC003633 TSC_hg19_v1_chr3_-_100119948	-91453	-	TSC_hg19_v1_chr3_+_100211440 AK000996 AY450392 NM_018004	72	+	TSC_hg19_v1_chr3_+_100211558 AK129789	202	+	BC040355 TSC_hg19_v1_chr3_+_100238088	26694	+	BC052994|TOMM70A|9868|translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)##BC065555|TOMM70A|9868|translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)##NM_014820|TOMM70A|9868|translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)##AK302796|TOMM70A|9868|translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)##BC040562|LNP1|348801|leukemia NUP98 fusion partner 1##NM_001085451|LNP1|348801|leukemia NUP98 fusion partner 1##AB018262|TOMM70A|9868|translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)##BC003633|TOMM70A|9868|translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)##AK000996|TMEM45A|55076|transmembrane protein 45A##AY450392|TMEM45A|55076|transmembrane protein 45A##NM_018004|TMEM45A|55076|transmembrane protein 45A##AK129789|TMEM45A|55076|transmembrane protein 45A##BC040355|TMEM45A|55076|transmembrane protein 45A	0.850158	denovo_WM_21:-8:0.835
chr1	15930066	15930207	reg1000538.p1	7.545	+	DQ893530 DQ896746 TSC_hg19_v1_chr1_-_15911519 AY057097 AK027037 AK130034 AK225366 BC005090 NM_024758	-18596	-	TSC_hg19_v1_chr1_+_15853357 AK091848 AX747219 AB023179 NM_015291 CR749259 CR749567 AL833299 AK292479 BX648982	-76771	+	BC047363 TSC_hg19_v1_chr1_+_15853342	-76811	+	TSC_hg19_v1_chr1_+_15943952 AK293006 NM_032341	13816	+	TSC_hg19_v1_chr1_+_15944018 BC006011	13901	+	TSC_hg19_v1_chr1_+_15944063 CU675225	13975	+	DQ893530|AGMAT|79814|agmatine ureohydrolase (agmatinase)##DQ896746|AGMAT|79814|agmatine ureohydrolase (agmatinase)##AY057097|AGMAT|79814|agmatine ureohydrolase (agmatinase)##AK130034|AGMAT|79814|agmatine ureohydrolase (agmatinase)##AK225366|AGMAT|79814|agmatine ureohydrolase (agmatinase)##BC005090|AGMAT|79814|agmatine ureohydrolase (agmatinase)##NM_024758|AGMAT|79814|agmatine ureohydrolase (agmatinase)##AK091848|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##AB023179|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##NM_015291|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##CR749259|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##CR749567|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##AL833299|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##AK292479|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##BX648982|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##BC047363|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##AK293006|DDI2|84301|DNA-damage inducible 1 homolog 2 (S. cerevisiae)##NM_032341|DDI2|84301|DNA-damage inducible 1 homolog 2 (S. cerevisiae)##BC006011|DDI2|84301|DNA-damage inducible 1 homolog 2 (S. cerevisiae)	0.0	
chr19	58790173	58790302	reg1000465.p2	7.544	+	TSC_hg19_v1_chr19_+_58740282 AL833618 AK226080 AK290297 AK291656 AK301650 AK316446 AK296846 BC018980	-49951	+	NM_014480	-50168	+	TSC_hg19_v1_chr19_+_58695200 BC009763 AB527704 BT007304 CU679475	-94972	+	TSC_hg19_v1_chr19_+_58790320 AK093110 AX747928 NM_021089 AK225825 AL832049 AK294246 AK299716 BC039323 EU446717 CU691714 AB385025	139	+	TSC_hg19_v1_chr19_+_58816742 BC011670 AK054868	26491	+	TSC_hg19_v1_chr19_+_58816758 BC010118	26533	+	AL833618|ZNF544|27300|zinc finger protein 544##AK226080|ZNF544|27300|zinc finger protein 544##AK290297|ZNF544|27300|zinc finger protein 544##AK291656|ZNF544|27300|zinc finger protein 544##AK301650|ZNF544|27300|zinc finger protein 544##AK316446|ZNF544|27300|zinc finger protein 544##AK296846|ZNF544|27300|zinc finger protein 544##BC018980|ZNF544|27300|zinc finger protein 544##NM_014480|ZNF544|27300|zinc finger protein 544##BC009763|ZNF274|10782|zinc finger protein 274##BT007304|ZNF274|10782|zinc finger protein 274##AK093110|ZNF8|7554|zinc finger protein 8##NM_021089|ZNF8|7554|zinc finger protein 8##AK225825|ZNF8|7554|zinc finger protein 8##AK299716|ZNF8|7554|zinc finger protein 8##BC039323|ZNF8|7554|zinc finger protein 8##EU446717|ZNF8|7554|zinc finger protein 8##BC011670|ERVK3-1|100506584|endogenous retrovirus group K3, member 1##AK054868|ERVK3-1|100506584|endogenous retrovirus group K3, member 1##BC010118|ERVK3-1|100506584|endogenous retrovirus group K3, member 1	3.496717	denovo_WM_21:9:0.660	denovo_WM_21:-15:0.946	denovo_WM_21:41:0.946	denovo_WM_21:-46:0.946
chr12	54019824	54019940	reg1000470.p1	7.523	+	TSC_hg19_v1_chr12_-_54019764 BC042363 NM_001206683	-147	-	AB463398 X57197 NM_001130059	-25089	-	BC104234 BC104235 AF005271 NM_003717	-118486	-	TSC_hg19_v1_chr12_-_54020167 BC136302 X52943 AK298853 AK313507 BC032433 BC140006 NM_001130060 NM_001206682 NM_006856	271	-	D28402 TSC_hg19_v1_chr12_-_54069859 AK130971	49994	-	NM_005176	50226	-	BC042363|ATF7|11016|activating transcription factor 7##NM_001206683|ATF7|11016|activating transcription factor 7##X57197|ATF7|11016|activating transcription factor 7##NM_001130059|ATF7|11016|activating transcription factor 7##BC104234|NPFF|8620|neuropeptide FF-amide peptide precursor##BC104235|NPFF|8620|neuropeptide FF-amide peptide precursor##AF005271|NPFF|8620|neuropeptide FF-amide peptide precursor##NM_003717|NPFF|8620|neuropeptide FF-amide peptide precursor##BC136302|ATF7|11016|activating transcription factor 7##X52943|ATF7|11016|activating transcription factor 7##AK298853|ATF7|11016|activating transcription factor 7##AK313507|ATF7|11016|activating transcription factor 7##BC032433|ATF7|11016|activating transcription factor 7##BC140006|ATF7|11016|activating transcription factor 7##NM_001130060|ATF7|11016|activating transcription factor 7##NM_001206682|ATF7|11016|activating transcription factor 7##NM_006856|ATF7|11016|activating transcription factor 7##D28402|ATP5G2|517|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9)##AK130971|ATP5G2|517|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9)##NM_005176|ATP5G2|517|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9)	0.946461	denovo_WM_21:3:0.917
chr19	50179956	50180141	reg1000134.p1	7.523	+	AB590882 TSC_hg19_v1_chr19_+_50169270 BC007724	-10861	+	TSC_hg19_v1_chr19_-_50169088 BC000660 AK314421 BC009395 AK057577 AK292027 NM_001197122 NM_001197123 NM_001197124 NM_001197125 NM_001197126 NM_001197127 NM_001197128 NM_001571	-10969	-	TSC_hg19_v1_chr19_-_50168868 Z56281 HM357932 HM357933 HM357934 HM357935 HM357936 HM357937	-11135	-	AK304660 NM_001207042 NM_001536 NM_198318 TSC_hg19_v1_chr19_+_50180491	401	+	AK295973 TSC_hg19_v1_chr19_+_50180493 AB590883 BC019268 AY775289 D66904 Y10805 Y10806 Y10807 BC109282 BC109283	473	+	BC032764 NM_001101340	11882	+	BC007724|BCL2L12|83596|BCL2-like 12 (proline rich)##BC000660|IRF3|3661|interferon regulatory factor 3##AK314421|IRF3|3661|interferon regulatory factor 3##BC009395|IRF3|3661|interferon regulatory factor 3##AK057577|IRF3|3661|interferon regulatory factor 3##AK292027|IRF3|3661|interferon regulatory factor 3##NM_001197122|IRF3|3661|interferon regulatory factor 3##NM_001197123|IRF3|3661|interferon regulatory factor 3##NM_001197124|IRF3|3661|interferon regulatory factor 3##NM_001197125|IRF3|3661|interferon regulatory factor 3##NM_001197126|IRF3|3661|interferon regulatory factor 3##NM_001197127|IRF3|3661|interferon regulatory factor 3##NM_001197128|IRF3|3661|interferon regulatory factor 3##NM_001571|IRF3|3661|interferon regulatory factor 3##Z56281|IRF3|3661|interferon regulatory factor 3##HM357932|IRF3|3661|interferon regulatory factor 3##HM357933|IRF3|3661|interferon regulatory factor 3##HM357934|IRF3|3661|interferon regulatory factor 3##HM357935|IRF3|3661|interferon regulatory factor 3##HM357936|IRF3|3661|interferon regulatory factor 3##HM357937|IRF3|3661|interferon regulatory factor 3##AK304660|PRMT1|3276|protein arginine methyltransferase 1##NM_001207042|PRMT1|3276|protein arginine methyltransferase 1##NM_001536|PRMT1|3276|protein arginine methyltransferase 1##NM_198318|PRMT1|3276|protein arginine methyltransferase 1##AK295973|PRMT1|3276|protein arginine methyltransferase 1##BC019268|PRMT1|3276|protein arginine methyltransferase 1##AY775289|PRMT1|3276|protein arginine methyltransferase 1##D66904|PRMT1|3276|protein arginine methyltransferase 1##Y10805|PRMT1|3276|protein arginine methyltransferase 1##Y10806|PRMT1|3276|protein arginine methyltransferase 1##Y10807|PRMT1|3276|protein arginine methyltransferase 1##BC109282|PRMT1|3276|protein arginine methyltransferase 1##BC109283|PRMT1|3276|protein arginine methyltransferase 1##BC032764|C19orf76|199800|chromosome 19 open reading frame 76##NM_001101340|C19orf76|199800|chromosome 19 open reading frame 76	0.80419	denovo_WM_21:66:0.730
chr16	70415284	70415444	reg1000658.p1	7.516	+	TSC_hg19_v1_chr16_+_70380805 AK001988 CR749227 BC025771 AK125701 AK310804 AK223262 AK310604 AL832970 BC005162 BC006544 NM_018332 BC137496 BC137497 AK299539 CU675025	-34536	+	AK027378 AL136639 TSC_hg19_v1_chr16_+_70333096 BC003626 BC010008 AF136175 AF183422 EU831645 EU831729 AB527308 CU678542 AJ237946 CR457215 CR533509	-82216	+	TSC_hg19_v1_chr16_+_70333090 AK296868 NM_001014449 NM_001014451 NM_007242 AK316346 AK223115	-82288	+	TSC_hg19_v1_chr16_-_70473007 NM_006927	57617	-	AJ441184 AK056456 AK092025 AK128387 AK293794 AK315590 AX747320 NM_145059 AK074168 BC032542	73135	+	AK096727 TSC_hg19_v1_chr16_+_70502845 BC015955	87476	+	AK001988|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##CR749227|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC025771|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK125701|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK310804|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK223262|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK310604|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AL832970|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC005162|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC006544|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##NM_018332|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC137496|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC137497|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK299539|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK027378|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AL136639|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##BC003626|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##BC010008|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##EU831645|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##EU831729|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AJ237946|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##CR457215|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##CR533509|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK296868|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_001014449|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_001014451|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_007242|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK316346|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK223115|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_006927|ST3GAL2|6483|ST3 beta-galactoside alpha-2,3-sialyltransferase 2##AJ441184|FUK|197258|fucokinase##AK056456|FUK|197258|fucokinase##AK092025|FUK|197258|fucokinase##AK128387|FUK|197258|fucokinase##AK293794|FUK|197258|fucokinase##AK315590|FUK|197258|fucokinase##NM_145059|FUK|197258|fucokinase##AK074168|FUK|197258|fucokinase##BC032542|FUK|197258|fucokinase##AK096727|FUK|197258|fucokinase	0.069759	
chr7	132766902	132767066	reg1000580.p2	7.515	+	TSC_hg19_v1_chr7_-_132766851 BC011596 BC014839 AK129533	-138	-	AB528286 TSC_hg19_v1_chr7_-_132766813 AK294071 AK000427 NM_017812 AK310236	-220	-	BC028744 NM_181775	-433538	-	TSC_hg19_v1_chr7_+_132937838 NM_001037126 NM_021807 AF380839 AK027688 AL831989 AK298191 BC067263 BC026174 CU693148 AB051486	170865	+	BC104897 BC104899 AK057348 NM_144648	1045093	+	AJ971941 TSC_hg19_v1_chr7_-_134001622 AK075368 BC008413 AJ315497 AJ315498 AK307621 AK027603 AK222874	1234639	-	BC011596|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##BC014839|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##AK129533|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##AK294071|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##AK000427|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##NM_017812|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##AK310236|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##BC028744|PLXNA4|91584|plexin A4##NM_181775|PLXNA4|91584|plexin A4##NM_001037126|EXOC4|60412|exocyst complex component 4##NM_021807|EXOC4|60412|exocyst complex component 4##AF380839|EXOC4|60412|exocyst complex component 4##AK027688|EXOC4|60412|exocyst complex component 4##AL831989|EXOC4|60412|exocyst complex component 4##AK298191|EXOC4|60412|exocyst complex component 4##BC067263|EXOC4|60412|exocyst complex component 4##BC026174|EXOC4|60412|exocyst complex component 4##AB051486|EXOC4|60412|exocyst complex component 4##BC104897|LRGUK|136332|leucine-rich repeats and guanylate kinase domain containing##BC104899|LRGUK|136332|leucine-rich repeats and guanylate kinase domain containing##AK057348|LRGUK|136332|leucine-rich repeats and guanylate kinase domain containing##NM_144648|LRGUK|136332|leucine-rich repeats and guanylate kinase domain containing##AJ971941|SLC35B4|84912|solute carrier family 35, member B4##AK075368|SLC35B4|84912|solute carrier family 35, member B4##BC008413|SLC35B4|84912|solute carrier family 35, member B4##AJ315497|SLC35B4|84912|solute carrier family 35, member B4##AJ315498|SLC35B4|84912|solute carrier family 35, member B4##AK307621|SLC35B4|84912|solute carrier family 35, member B4##AK027603|SLC35B4|84912|solute carrier family 35, member B4##AK222874|SLC35B4|84912|solute carrier family 35, member B4	0.14951	
chr16	420548	420684	reg1000427.p1	7.512	+	BX647501 BC013829 TSC_hg19_v1_chr16_-_420539 AK226042 AK096844 BC000507 AK315180 NM_006428	-78	-	TSC_hg19_v1_chr16_-_402657 NM_003502 NM_181050	-17970	-	AF009674 BC044648 TSC_hg19_v1_chr16_-_402516	-18158	-	DQ892035 DQ895226 BC021557 AB045292 TSC_hg19_v1_chr16_-_431979 NM_021259 AK091823	11305	-	TSC_hg19_v1_chr16_+_447198 BC017067 NM_005009 BC004880 Y07604 AB528678 BT019438	26595	+	TSC_hg19_v1_chr16_+_451884 AK055839 NM_020664 BC010740 AK128012 AK225961 BC030226	31268	+	BX647501|MRPL28|10573|mitochondrial ribosomal protein L28##BC013829|MRPL28|10573|mitochondrial ribosomal protein L28##AK226042|MRPL28|10573|mitochondrial ribosomal protein L28##AK096844|MRPL28|10573|mitochondrial ribosomal protein L28##BC000507|MRPL28|10573|mitochondrial ribosomal protein L28##AK315180|MRPL28|10573|mitochondrial ribosomal protein L28##NM_006428|MRPL28|10573|mitochondrial ribosomal protein L28##NM_003502|AXIN1|8312|axin 1##NM_181050|AXIN1|8312|axin 1##AF009674|AXIN1|8312|axin 1##BC044648|AXIN1|8312|axin 1##DQ892035|TMEM8A|58986|transmembrane protein 8A##DQ895226|TMEM8A|58986|transmembrane protein 8A##BC021557|TMEM8A|58986|transmembrane protein 8A##AB045292|TMEM8A|58986|transmembrane protein 8A##NM_021259|TMEM8A|58986|transmembrane protein 8A##AK091823|TMEM8A|58986|transmembrane protein 8A##BC017067|NME4|4833|non-metastatic cells 4, protein expressed in##NM_005009|NME4|4833|non-metastatic cells 4, protein expressed in##BC004880|NME4|4833|non-metastatic cells 4, protein expressed in##Y07604|NME4|4833|non-metastatic cells 4, protein expressed in##BT019438|NME4|4833|non-metastatic cells 4, protein expressed in##AK055839|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##NM_020664|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##BC010740|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##AK128012|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##AK225961|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##BC030226|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal	0.053195	
chr22	24181173	24181357	reg1000294.p1	7.511	+	AB528119 CU013077 CU013365 CU691264 TSC_hg19_v1_chr22_-_24181194 AK096976 AK125830 BC057830 CR456372 AL389876 NM_001002862 NM_001135751 NM_198440	-80	-	TSC_hg19_v1_chr22_+_24129164 AK024025 NM_001007468 NM_003073 AK303620 AK021419 AK299411 AJ011737 AJ011738 U04847 BC117114 BC143667 CR456581 AL389878 AB463295 CU013180 CU013468 HQ258224 AB017523	-52016	+	AK075448 AK129792 NM_005940 X57766 BC057788	-66220	+	AF443201 AJ271290 NM_001024938 NM_030807 AK314502 AK315937 AK075467 AK296169 AK308602 BC063525 BC100807 BC100808 BC100809 BC100810 AK300196 TSC_hg19_v1_chr22_+_24199338	17933	+	NM_001024939 TSC_hg19_v1_chr22_+_24200061 AK304409 AK308589 AK316049 CR456373 AB463269 CU013078 CU013366	18848	+	TSC_hg19_v1_chr22_+_24236567 BC022414 NM_002415 BC013976	55296	+	CU013077|DERL3|91319|Der1-like domain family, member 3##CU013365|DERL3|91319|Der1-like domain family, member 3##AK096976|DERL3|91319|Der1-like domain family, member 3##AK125830|DERL3|91319|Der1-like domain family, member 3##BC057830|DERL3|91319|Der1-like domain family, member 3##CR456372|DERL3|91319|Der1-like domain family, member 3##AL389876|DERL3|91319|Der1-like domain family, member 3##NM_001002862|DERL3|91319|Der1-like domain family, member 3##NM_001135751|DERL3|91319|Der1-like domain family, member 3##NM_198440|DERL3|91319|Der1-like domain family, member 3##AK024025|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##NM_001007468|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##NM_003073|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK303620|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK021419|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK299411|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AJ011737|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AJ011738|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##BC117114|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##BC143667|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##CR456581|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AL389878|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##CU013180|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##CU013468|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##HQ258224|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AB017523|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK075448|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##AK129792|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##NM_005940|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##X57766|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##BC057788|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##AF443201|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AJ271290|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##NM_001024938|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##NM_030807|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK314502|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK315937|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK075467|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK296169|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK308602|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC063525|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC100807|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC100808|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC100809|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC100810|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK300196|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##NM_001024939|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK304409|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK308589|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK316049|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##CR456373|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##CU013078|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##CU013366|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC022414|MIF|4282|macrophage migration inhibitory factor (glycosylation-inhibiting factor)##NM_002415|MIF|4282|macrophage migration inhibitory factor (glycosylation-inhibiting factor)##BC013976|MIF|4282|macrophage migration inhibitory factor (glycosylation-inhibiting factor)	1.726507	denovo_WM_21:46:0.859
chr7	5085224	5085375	reg1000715.p1	7.500	+	TSC_hg19_v1_chr7_+_5013663 BC068459 AK309798 AK308526 AK311517 BX538059 AK303831 BC026736	-71613	+	AY424288 BC037881 BC048346 TSC_hg19_v1_chr7_-_4998841 AK094524 BC067905 NM_001100600 NM_198403	-86500	-	TSC_hg19_v1_chr7_-_4923339 AK302549 AB058752 AK294745 NM_018059	-162007	-	AK293069 NM_001204456 NM_001204513 TSC_hg19_v1_chr7_+_5085490 AF226869 NM_021163	202	+	TSC_hg19_v1_chr7_+_5229863 AL080155 NM_001033518 NM_001033519 NM_015610 NM_016003 AK024279 BC007596 AK023041	144530	+	TSC_hg19_v1_chr7_+_5229890 AK315468 BC004116 BC021200	144598	+	BC068459|RNF216P1|441191|ring finger protein 216 pseudogene 1##AK309798|RNF216P1|441191|ring finger protein 216 pseudogene 1##AK308526|RNF216P1|441191|ring finger protein 216 pseudogene 1##AK311517|RNF216P1|441191|ring finger protein 216 pseudogene 1##BX538059|RNF216P1|441191|ring finger protein 216 pseudogene 1##AK303831|RNF216P1|441191|ring finger protein 216 pseudogene 1##BC026736|RNF216P1|441191|ring finger protein 216 pseudogene 1##AY424288|MMD2|221938|monocyte to macrophage differentiation-associated 2##BC037881|MMD2|221938|monocyte to macrophage differentiation-associated 2##BC048346|MMD2|221938|monocyte to macrophage differentiation-associated 2##AK094524|MMD2|221938|monocyte to macrophage differentiation-associated 2##BC067905|MMD2|221938|monocyte to macrophage differentiation-associated 2##NM_001100600|MMD2|221938|monocyte to macrophage differentiation-associated 2##NM_198403|MMD2|221938|monocyte to macrophage differentiation-associated 2##AK302549|RADIL|55698|Ras association and DIL domains##AB058752|RADIL|55698|Ras association and DIL domains##AK294745|RADIL|55698|Ras association and DIL domains##NM_018059|RADIL|55698|Ras association and DIL domains##AK293069|RBAK|57786|RB-associated KRAB zinc finger##NM_001204456|RBAK|57786|RB-associated KRAB zinc finger##NM_001204513|RBAK-LOC389458|100533952|RBAK-LOC389458 readthrough##NM_021163|RBAK|57786|RB-associated KRAB zinc finger##AL080155|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##NM_001033518|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##NM_001033519|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##NM_015610|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##NM_016003|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AK024279|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC007596|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AK023041|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AK315468|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC004116|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC021200|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2	0.0	
chr7	99070299	99070438	reg1000543.p1	7.500	+	CR456891 CR542155 AF088918 TSC_hg19_v1_chr7_-_99063788 AY046911 AK223348 AK295912 BC003678 AF047436 NM_001003713 NM_001003714 NM_001039178 NM_001198879 NM_004889	-6575	-	BC003101 TSC_hg19_v1_chr7_+_99036685 AB529148 CU690790 CR542161	-33692	+	TSC_hg19_v1_chr7_+_99036565 NM_001081559 NM_006693 BC050738	-33811	+	TSC_hg19_v1_chr7_+_99070512 AK309467 BC031249	102	+	TSC_hg19_v1_chr7_+_99070513 AK093141 AX747949 NM_001013258 NM_213603	145	+	TSC_hg19_v1_chr7_+_99070534 BC089424 BC050286 BX648360	232	+	CR456891|ATP5J2|9551|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2##CR542155|ATP5J2|9551|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2##AF088918|ATP5J2|9551|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2##AY046911|ATP5J2|9551|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2##AK223348|ATP5J2|9551|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2##AK295912|ATP5J2-PTCD1|100526740|ATP5J2-PTCD1 readthrough##BC003678|ATP5J2|9551|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2##AF047436|ATP5J2|9551|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2##NM_001003713|ATP5J2|9551|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2##NM_001003714|ATP5J2|9551|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2##NM_001039178|ATP5J2|9551|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2##NM_001198879|ATP5J2-PTCD1|100526740|ATP5J2-PTCD1 readthrough##NM_004889|ATP5J2|9551|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2##BC003101|CPSF4|10898|cleavage and polyadenylation specific factor 4, 30kDa##CR542161|CPSF4|10898|cleavage and polyadenylation specific factor 4, 30kDa##NM_001081559|CPSF4|10898|cleavage and polyadenylation specific factor 4, 30kDa##NM_006693|CPSF4|10898|cleavage and polyadenylation specific factor 4, 30kDa##BC050738|CPSF4|10898|cleavage and polyadenylation specific factor 4, 30kDa##AK309467|ZNF789|285989|zinc finger protein 789##BC031249|ZNF789|285989|zinc finger protein 789##AK093141|ZNF789|285989|zinc finger protein 789##NM_001013258|ZNF789|285989|zinc finger protein 789##NM_213603|ZNF789|285989|zinc finger protein 789##BC089424|ZNF789|285989|zinc finger protein 789##BC050286|ZNF789|285989|zinc finger protein 789##BX648360|ZNF789|285989|zinc finger protein 789	1.469118	denovo_WM_21:-5:0.712	denovo_WM_21:23:0.757
chr17	43697599	43697699	reg1000516.p1	7.497	+	TSC_hg19_v1_chr17_-_43568133 NM_014798	-129495	-	TSC_hg19_v1_chr17_-_43568118 AK299116 BC053848 AB002354 BC064361	-129547	-	TSC_hg19_v1_chr17_-_43510292 BC067345 NM_174919	-187362	-	TSC_hg19_v1_chr17_+_43861628 NM_001145146 NM_001145147 NM_001145148 NM_004382	163987	+	BC037967 HM852949 TSC_hg19_v1_chr17_+_43861685 X72304	164029	+	BC025401 NM_175882 BC022041	224607	+	NM_014798|PLEKHM1|9842|pleckstrin homology domain containing, family M (with RUN domain) member 1##AK299116|PLEKHM1|9842|pleckstrin homology domain containing, family M (with RUN domain) member 1##BC053848|PLEKHM1|9842|pleckstrin homology domain containing, family M (with RUN domain) member 1##AB002354|PLEKHM1|9842|pleckstrin homology domain containing, family M (with RUN domain) member 1##BC064361|PLEKHM1|9842|pleckstrin homology domain containing, family M (with RUN domain) member 1##BC067345|ARHGAP27|201176|Rho GTPase activating protein 27##NM_174919|ARHGAP27|201176|Rho GTPase activating protein 27##NM_001145146|CRHR1|1394|corticotropin releasing hormone receptor 1##NM_001145147|CRHR1|1394|corticotropin releasing hormone receptor 1##NM_001145148|CRHR1|1394|corticotropin releasing hormone receptor 1##NM_004382|CRHR1|1394|corticotropin releasing hormone receptor 1##BC037967|CRHR1|1394|corticotropin releasing hormone receptor 1##X72304|CRHR1|1394|corticotropin releasing hormone receptor 1##BC025401|IMP5|162540|intramembrane protease 5##NM_175882|IMP5|162540|intramembrane protease 5##BC022041|IMP5|162540|intramembrane protease 5	0.877618	denovo_WM_21:26:0.878
chr16	639792	639977	reg1000604.p2	7.495	+	NM_001172664	-216	+	NM_001172663	-528	+	TSC_hg19_v1_chr16_+_619980 AB003723 NM_148920 BC006377 AF030177 BC010094	-19869	+	TSC_hg19_v1_chr16_+_640067 NM_001172665 NM_001172666	183	+	TSC_hg19_v1_chr16_+_640099 AY823398	222	+	NM_021168 BC028696 TSC_hg19_v1_chr16_+_640232	327	+	NM_001172664|RAB40C|57799|RAB40C, member RAS oncogene family##NM_001172663|RAB40C|57799|RAB40C, member RAS oncogene family##AB003723|PIGQ|9091|phosphatidylinositol glycan anchor biosynthesis, class Q##NM_148920|PIGQ|9091|phosphatidylinositol glycan anchor biosynthesis, class Q##BC006377|PIGQ|9091|phosphatidylinositol glycan anchor biosynthesis, class Q##AF030177|PIGQ|9091|phosphatidylinositol glycan anchor biosynthesis, class Q##BC010094|PIGQ|9091|phosphatidylinositol glycan anchor biosynthesis, class Q##NM_001172665|RAB40C|57799|RAB40C, member RAS oncogene family##NM_001172666|RAB40C|57799|RAB40C, member RAS oncogene family##AY823398|RAB40C|57799|RAB40C, member RAS oncogene family##NM_021168|RAB40C|57799|RAB40C, member RAS oncogene family##BC028696|RAB40C|57799|RAB40C, member RAS oncogene family	0.088791	
chr6	160183365	160183515	reg1000702.p1	7.482	+	TSC_hg19_v1_chr6_+_160183076 AF356877 AK225244 S70154 AK225089 AK291080 AB208993 BC000408 AB384814 CU674200	-350	+	NM_005891 TSC_hg19_v1_chr6_+_160183028	-424	+	TSC_hg19_v1_chr6_+_160148611 D14661 NM_152857	-34827	+	AK294273 TSC_hg19_v1_chr6_+_160183510	87	+	BT006969 CU674328 DQ890600 DQ893771 X52882 TSC_hg19_v1_chr6_-_160210635 BC000665	27151	-	TSC_hg19_v1_chr6_-_160210701 AK308551 AK312604 NM_001008897 NM_030752	27277	-	AF356877|ACAT2|39|acetyl-CoA acetyltransferase 2##AK225244|ACAT2|39|acetyl-CoA acetyltransferase 2##S70154|ACAT2|39|acetyl-CoA acetyltransferase 2##AK225089|ACAT2|39|acetyl-CoA acetyltransferase 2##AK291080|ACAT2|39|acetyl-CoA acetyltransferase 2##AB208993|ACAT2|39|acetyl-CoA acetyltransferase 2##BC000408|ACAT2|39|acetyl-CoA acetyltransferase 2##NM_005891|ACAT2|39|acetyl-CoA acetyltransferase 2##D14661|WTAP|9589|Wilms tumor 1 associated protein##NM_152857|WTAP|9589|Wilms tumor 1 associated protein##AK294273|ACAT2|39|acetyl-CoA acetyltransferase 2##BT006969|TCP1|6950|t-complex 1##DQ890600|TCP1|6950|t-complex 1##DQ893771|TCP1|6950|t-complex 1##X52882|TCP1|6950|t-complex 1##BC000665|TCP1|6950|t-complex 1##AK312604|TCP1|6950|t-complex 1##NM_001008897|TCP1|6950|t-complex 1##NM_030752|TCP1|6950|t-complex 1	2.152563	denovo_WM_21:5:0.956	denovo_WM_21:-36:0.289	denovo_WM_21:45:0.907
chr5	115177286	115177464	reg1000467.p1	7.466	+	D85777 Z31357 BC024241 AK130357 AK314231 TSC_hg19_v1_chr5_-_115152355 AK309390 NM_001801	-25012	-	TSC_hg19_v1_chr5_-_114961708 AY304583 AY304584 BC019349 AK075218 AK304210 AK027512 NM_001164468 NM_001164469 NM_181836	-215581	-	TSC_hg19_v1_chr5_-_114961697 AK074962	-215683	-	BC011033 TSC_hg19_v1_chr5_-_115177263 AB017507 AB590693 EU554057 BC012266 AK313320 NM_004707	29	-	TSC_hg19_v1_chr5_+_115177642 NM_001284 BX647735 U91932 BC000804 D63643 BC012614 X99458 DQ891198 DQ894381 AK311843 BT009833 CR450341	300	+	AK291655 BC068560 NM_173800 BC060869 AY560010 BC109022 BC109023	120836	+	D85777|CDO1|1036|cysteine dioxygenase, type I##Z31357|CDO1|1036|cysteine dioxygenase, type I##BC024241|CDO1|1036|cysteine dioxygenase, type I##AK130357|CDO1|1036|cysteine dioxygenase, type I##AK314231|CDO1|1036|cysteine dioxygenase, type I##NM_001801|CDO1|1036|cysteine dioxygenase, type I##AY304583|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##AY304584|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##BC019349|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AK075218|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##AK304210|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AK027512|TMED7|51014|transmembrane emp24 protein transport domain containing 7##NM_001164468|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##NM_001164469|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##NM_181836|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AK074962|TMED7|51014|transmembrane emp24 protein transport domain containing 7##BC011033|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##AB017507|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##EU554057|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##BC012266|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##AK313320|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##NM_004707|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##NM_001284|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##BX647735|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##U91932|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##BC000804|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##D63643|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##BC012614|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##X99458|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##DQ891198|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##DQ894381|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##AK311843|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##BT009833|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##CR450341|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##AK291655|AQPEP|206338|laeverin##BC068560|AQPEP|206338|laeverin##NM_173800|AQPEP|206338|laeverin##BC060869|AQPEP|206338|laeverin##AY560010|AQPEP|206338|laeverin##BC109022|AQPEP|206338|laeverin##BC109023|AQPEP|206338|laeverin	0.0	
chr3	148804302	148804433	reg1000748.p1	7.459	+	AB209052 EU446704 TSC_hg19_v1_chr3_-_148804298 AK291231 L34673 BC015498 BC005260 BC044659 BC014326 BC030976 NM_003071 NM_139048	-105	-	TSC_hg19_v1_chr3_+_148709326 AK299962 BC000033 X79537 AK312283 AF087942 U44131	-95032	+	TSC_hg19_v1_chr3_+_148709140 NM_001184720 NM_001184721 NM_004130	-95200	+	AY033141 NM_032383 TSC_hg19_v1_chr3_+_148847453 AK291631 AK055245 BC040359 AK298478 CU691866 DQ891178 DQ894360	43073	+	BC070304 NM_000096	135440	-	NM_001184723 AK313400 BC014339 AL833134 NM_138786	247035	-	AB209052|HLTF|6596|helicase-like transcription factor##EU446704|HLTF|6596|helicase-like transcription factor##AK291231|HLTF|6596|helicase-like transcription factor##L34673|HLTF|6596|helicase-like transcription factor##BC015498|HLTF|6596|helicase-like transcription factor##BC005260|HLTF|6596|helicase-like transcription factor##BC044659|HLTF|6596|helicase-like transcription factor##BC014326|HLTF|6596|helicase-like transcription factor##BC030976|HLTF|6596|helicase-like transcription factor##NM_003071|HLTF|6596|helicase-like transcription factor##NM_139048|HLTF|6596|helicase-like transcription factor##AK299962|GYG1|2992|glycogenin 1##BC000033|GYG1|2992|glycogenin 1##X79537|GYG1|2992|glycogenin 1##AK312283|GYG1|2992|glycogenin 1##AF087942|GYG1|2992|glycogenin 1##U44131|GYG1|2992|glycogenin 1##NM_001184720|GYG1|2992|glycogenin 1##NM_001184721|GYG1|2992|glycogenin 1##NM_004130|GYG1|2992|glycogenin 1##AY033141|HPS3|84343|Hermansky-Pudlak syndrome 3##NM_032383|HPS3|84343|Hermansky-Pudlak syndrome 3##AK291631|HPS3|84343|Hermansky-Pudlak syndrome 3##AK055245|HPS3|84343|Hermansky-Pudlak syndrome 3##BC040359|HPS3|84343|Hermansky-Pudlak syndrome 3##AK298478|HPS3|84343|Hermansky-Pudlak syndrome 3##DQ891178|HPS3|84343|Hermansky-Pudlak syndrome 3##DQ894360|HPS3|84343|Hermansky-Pudlak syndrome 3##BC070304|CP|1356|ceruloplasmin (ferroxidase)##NM_000096|CP|1356|ceruloplasmin (ferroxidase)##NM_001184723|TM4SF18|116441|transmembrane 4 L six family member 18##AK313400|TM4SF18|116441|transmembrane 4 L six family member 18##BC014339|TM4SF18|116441|transmembrane 4 L six family member 18##AL833134|TM4SF18|116441|transmembrane 4 L six family member 18##NM_138786|TM4SF18|116441|transmembrane 4 L six family member 18	0.170065	
chr16	84538272	84538421	reg1000818.p1	7.447	+	BC023251 TSC_hg19_v1_chr16_-_84538263 AB046829 BC060844 AK291237 NM_020947 AK300132 AK310887	-55	-	TSC_hg19_v1_chr16_+_84402143 AK300526 AY791884 BX648333 NM_014861 AK316128 CR749829	-136204	+	AF302109 NM_021197 AF169631 TSC_hg19_v1_chr16_+_84328440 AK075061 BC029159 DQ893365 DQ896682	-209858	+	AB590839 BT006968 EU832743 TSC_hg19_v1_chr16_-_84651627 BC010884	113230	-	TSC_hg19_v1_chr16_-_84651682 L54057 BC053682 BC010039 NM_021149 AK315675 BC016702 BC042970	113314	-	TSC_hg19_v1_chr16_+_84682127 BC033821 NM_024731 BC032400	143788	+	BC023251|KIAA1609|57707|KIAA1609##AB046829|KIAA1609|57707|KIAA1609##BC060844|KIAA1609|57707|KIAA1609##AK291237|KIAA1609|57707|KIAA1609##NM_020947|KIAA1609|57707|KIAA1609##AK300132|KIAA1609|57707|KIAA1609##AK310887|KIAA1609|57707|KIAA1609##AK300526|ATP2C2|9914|ATPase, Ca++ transporting, type 2C, member 2##AY791884|ATP2C2|9914|ATPase, Ca++ transporting, type 2C, member 2##BX648333|ATP2C2|9914|ATPase, Ca++ transporting, type 2C, member 2##NM_014861|ATP2C2|9914|ATPase, Ca++ transporting, type 2C, member 2##AK316128|ATP2C2|9914|ATPase, Ca++ transporting, type 2C, member 2##CR749829|ATP2C2|9914|ATPase, Ca++ transporting, type 2C, member 2##AF302109|WFDC1|58189|WAP four-disulfide core domain 1##NM_021197|WFDC1|58189|WAP four-disulfide core domain 1##AF169631|WFDC1|58189|WAP four-disulfide core domain 1##AK075061|WFDC1|58189|WAP four-disulfide core domain 1##BC029159|WFDC1|58189|WAP four-disulfide core domain 1##DQ893365|WFDC1|58189|WAP four-disulfide core domain 1##DQ896682|WFDC1|58189|WAP four-disulfide core domain 1##BT006968|COTL1|23406|coactosin-like 1 (Dictyostelium)##EU832743|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC010884|COTL1|23406|coactosin-like 1 (Dictyostelium)##L54057|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC053682|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC010039|COTL1|23406|coactosin-like 1 (Dictyostelium)##NM_021149|COTL1|23406|coactosin-like 1 (Dictyostelium)##AK315675|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC016702|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC042970|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC033821|KLHL36|79786|kelch-like 36 (Drosophila)##NM_024731|KLHL36|79786|kelch-like 36 (Drosophila)##BC032400|KLHL36|79786|kelch-like 36 (Drosophila)	0.082546	
chr11	57479842	57480011	reg1000595.p2	7.437	+	AY148462 AB463861 BC009723 BC037223 NM_153450 TSC_hg19_v1_chr11_-_57479688	-313	-	BC026967 TSC_hg19_v1_chr11_+_57435567	-44358	+	TSC_hg19_v1_chr11_+_57435463 NM_015457 AB051535	-44451	+	NM_001144012 NM_015959 TSC_hg19_v1_chr11_+_57480020	83	+	AF132965 TSC_hg19_v1_chr11_+_57480075 AF059753 BC093062 AK075359 AK312990 AY451237 AY451236 BC000666 AX810695 AK297688 AK298065 AK223058 AB002382 AY358501 AB587557 AX810717	144	+	NM_170746 BC111087 AF536829 AJ276250 TSC_hg19_v1_chr11_+_57508954 AJ276249 BC064570	28926	+	AY148462|MED19|219541|mediator complex subunit 19##BC009723|MED19|219541|mediator complex subunit 19##BC037223|MED19|219541|mediator complex subunit 19##NM_153450|MED19|219541|mediator complex subunit 19##BC026967|ZDHHC5|25921|zinc finger, DHHC-type containing 5##NM_015457|ZDHHC5|25921|zinc finger, DHHC-type containing 5##AB051535|ZDHHC5|25921|zinc finger, DHHC-type containing 5##NM_001144012|TMX2|51075|thioredoxin-related transmembrane protein 2##NM_015959|TMX2|51075|thioredoxin-related transmembrane protein 2##AF132965|TMX2|51075|thioredoxin-related transmembrane protein 2##AF059753|TMX2|51075|thioredoxin-related transmembrane protein 2##BC093062|TMX2|51075|thioredoxin-related transmembrane protein 2##AK075359|TMX2|51075|thioredoxin-related transmembrane protein 2##AK312990|TMX2|51075|thioredoxin-related transmembrane protein 2##AY451237|TMX2|51075|thioredoxin-related transmembrane protein 2##AY451236|TMX2|51075|thioredoxin-related transmembrane protein 2##BC000666|TMX2|51075|thioredoxin-related transmembrane protein 2##AK297688|TMX2|51075|thioredoxin-related transmembrane protein 2##AK298065|TMX2|51075|thioredoxin-related transmembrane protein 2##AK223058|TMX2|51075|thioredoxin-related transmembrane protein 2##AB002382|TMX2-CTNND1|100528016|TMX2-CTNND1 readthrough (non-protein coding)##AY358501|TMX2|51075|thioredoxin-related transmembrane protein 2##NM_170746|C11orf31|280636|chromosome 11 open reading frame 31##AF536829|C11orf31|280636|chromosome 11 open reading frame 31##AJ276250|C11orf31|280636|chromosome 11 open reading frame 31##AJ276249|C11orf31|280636|chromosome 11 open reading frame 31##BC064570|C11orf31|280636|chromosome 11 open reading frame 31	0.547711	denovo_WM_21:-3:0.411
chr1	156308083	156308204	reg1000576.p1	7.431	+	TSC_hg19_v1_chr1_-_156308084 AL833197 AB208882 AK308023	-67	-	BC008019 TSC_hg19_v1_chr1_-_156308049 AK315923 AK126400	-89	-	DQ893014 DQ896259 X74801 AB529021 AK316387 TSC_hg19_v1_chr1_-_156308031 AY524046 AK293477 AK300765 BC006501	-135	-	TSC_hg19_v1_chr1_-_156308103 NM_001008800 NM_005998	9	-	AF193807 AK290840 AK294641 AK303799 AK303814 AY139092 AY139093 NM_020407 AK308556 TSC_hg19_v1_chr1_+_156339022 AK054780 BC065218	30878	+	NM_006365 U49857 BC059943 BC107686 BC050448 TSC_hg19_v1_chr1_-_156399219 AK095626 BC054045	91133	-	AL833197|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##AB208882|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##AK308023|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##BC008019|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##AK315923|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##AK126400|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##DQ893014|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##DQ896259|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##X74801|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##AK316387|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##AY524046|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##AK293477|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##AK300765|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##BC006501|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##NM_001008800|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##NM_005998|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##AF193807|RHBG|57127|Rh family, B glycoprotein (gene/pseudogene)##AK290840|RHBG|57127|Rh family, B glycoprotein (gene/pseudogene)##AK294641|RHBG|57127|Rh family, B glycoprotein (gene/pseudogene)##AK303799|RHBG|57127|Rh family, B glycoprotein (gene/pseudogene)##AK303814|RHBG|57127|Rh family, B glycoprotein (gene/pseudogene)##AY139092|RHBG|57127|Rh family, B glycoprotein (gene/pseudogene)##AY139093|RHBG|57127|Rh family, B glycoprotein (gene/pseudogene)##NM_020407|RHBG|57127|Rh family, B glycoprotein (gene/pseudogene)##AK308556|RHBG|57127|Rh family, B glycoprotein (gene/pseudogene)##AK054780|RHBG|57127|Rh family, B glycoprotein (gene/pseudogene)##BC065218|RHBG|57127|Rh family, B glycoprotein (gene/pseudogene)##NM_006365|C1orf61|10485|chromosome 1 open reading frame 61##U49857|C1orf61|10485|chromosome 1 open reading frame 61##BC059943|C1orf61|10485|chromosome 1 open reading frame 61##BC107686|C1orf61|10485|chromosome 1 open reading frame 61##BC050448|C1orf61|10485|chromosome 1 open reading frame 61##AK095626|C1orf61|10485|chromosome 1 open reading frame 61##BC054045|C1orf61|10485|chromosome 1 open reading frame 61	0.084089	
chr1	44820950	44821071	reg1000540.p1	7.431	+	TSC_hg19_v1_chr1_-_44820942 AK026596	-49	-	TSC_hg19_v1_chr1_-_44820938 AK290567 NM_024066	-74	-	AK308597 TSC_hg19_v1_chr1_-_44820929 BC144384	-84	-	AK056424 TSC_hg19_v1_chr1_+_44870926 BC034221 NM_018150	49932	+	TSC_hg19_v1_chr1_+_45097700 AK296038 AK225180	276752	+	CR457348 AK026006 AK225405 TSC_hg19_v1_chr1_-_45140099 BC064520 NM_024587 AL832539	319077	-	AK026596|ERI3|79033|ERI1 exoribonuclease family member 3##AK290567|ERI3|79033|ERI1 exoribonuclease family member 3##NM_024066|ERI3|79033|ERI1 exoribonuclease family member 3##BC144384|ERI3|79033|ERI1 exoribonuclease family member 3##AK056424|RNF220|55182|ring finger protein 220##BC034221|RNF220|55182|ring finger protein 220##NM_018150|RNF220|55182|ring finger protein 220##AK296038|RNF220|55182|ring finger protein 220##AK225180|RNF220|55182|ring finger protein 220##CR457348|TMEM53|79639|transmembrane protein 53##AK026006|TMEM53|79639|transmembrane protein 53##AK225405|TMEM53|79639|transmembrane protein 53##BC064520|TMEM53|79639|transmembrane protein 53##NM_024587|TMEM53|79639|transmembrane protein 53##AL832539|TMEM53|79639|transmembrane protein 53	0.134073	
chr11	107798868	107798988	reg1000618.p2	7.429	+	NM_017515	-69015	-	AK300582 TSC_hg19_v1_chr11_-_107729530 BC039195	-69340	-	CU691672 TSC_hg19_v1_chr11_-_107729514 AK023080 BC048302	-69423	-	TSC_hg19_v1_chr11_+_107799171 AK292969 BC028064 NM_017516 X99962	307	+	NM_003478 AK125294	80504	+	TSC_hg19_v1_chr11_+_107879644 AK292575 BC063306	80699	+	NM_017515|SLC35F2|54733|solute carrier family 35, member F2##AK300582|SLC35F2|54733|solute carrier family 35, member F2##BC039195|SLC35F2|54733|solute carrier family 35, member F2##AK023080|SLC35F2|54733|solute carrier family 35, member F2##BC048302|SLC35F2|54733|solute carrier family 35, member F2##AK292969|RAB39A|54734|RAB39A, member RAS oncogene family##BC028064|RAB39A|54734|RAB39A, member RAS oncogene family##NM_017516|RAB39A|54734|RAB39A, member RAS oncogene family##X99962|RAB39A|54734|RAB39A, member RAS oncogene family##NM_003478|CUL5|8065|cullin 5##AK125294|CUL5|8065|cullin 5##AK292575|CUL5|8065|cullin 5##BC063306|CUL5|8065|cullin 5	0.940818	denovo_WM_21:-28:0.925
chr3	33482131	33482270	reg1000351.p1	7.422	+	TSC_hg19_v1_chr3_-_33481898 AK293100 NM_001128161	-300	-	TSC_hg19_v1_chr3_-_33481868 BC047235 NM_001128160 NM_014517	-335	-	AK023274 AF198487 TSC_hg19_v1_chr3_-_33481564	-664	-	AB385365 AB014527 TSC_hg19_v1_chr3_-_33700598	218346	-	NM_001207044 AJ288058	218801	-	BC140778 TSC_hg19_v1_chr3_-_33759667	277404	-	AK293100|UBP1|7342|upstream binding protein 1 (LBP-1a)##NM_001128161|UBP1|7342|upstream binding protein 1 (LBP-1a)##BC047235|UBP1|7342|upstream binding protein 1 (LBP-1a)##NM_001128160|UBP1|7342|upstream binding protein 1 (LBP-1a)##NM_014517|UBP1|7342|upstream binding protein 1 (LBP-1a)##AK023274|UBP1|7342|upstream binding protein 1 (LBP-1a)##AF198487|UBP1|7342|upstream binding protein 1 (LBP-1a)##AB014527|CLASP2|23122|cytoplasmic linker associated protein 2##NM_001207044|CLASP2|23122|cytoplasmic linker associated protein 2##BC140778|CLASP2|23122|cytoplasmic linker associated protein 2	0.967357	denovo_WM_21:26:0.939
chr3	9885711	9885828	reg1000588.p1	7.413	+	TSC_hg19_v1_chr3_-_9885703 AK094587 AK299556 BC065741 AK291888 NM_001142547 NM_173659	-55	-	TSC_hg19_v1_chr3_-_9885693 AK296202	-81	-	TSC_hg19_v1_chr3_-_9885680 CU687542 CU689290 AK092026 AX747321 BC032135 BC049846 BC062362	-99	-	BC016851 NM_001199623 TSC_hg19_v1_chr3_-_9920497	34715	-	TSC_hg19_v1_chr3_-_9920639 AF303893 AY364640 NM_022094	34917	-	TSC_hg19_v1_chr3_-_9921936 AK024524 AK024530 NM_001199551 NM_001199552	36168	-	AK094587|RPUSD3|285367|RNA pseudouridylate synthase domain containing 3##AK299556|RPUSD3|285367|RNA pseudouridylate synthase domain containing 3##BC065741|RPUSD3|285367|RNA pseudouridylate synthase domain containing 3##AK291888|RPUSD3|285367|RNA pseudouridylate synthase domain containing 3##NM_001142547|RPUSD3|285367|RNA pseudouridylate synthase domain containing 3##NM_173659|RPUSD3|285367|RNA pseudouridylate synthase domain containing 3##AK296202|RPUSD3|285367|RNA pseudouridylate synthase domain containing 3##AK092026|RPUSD3|285367|RNA pseudouridylate synthase domain containing 3##BC032135|RPUSD3|285367|RNA pseudouridylate synthase domain containing 3##BC049846|RPUSD3|285367|RNA pseudouridylate synthase domain containing 3##BC062362|RPUSD3|285367|RNA pseudouridylate synthase domain containing 3##BC016851|CIDEC|63924|cell death-inducing DFFA-like effector c##NM_001199623|CIDEC|63924|cell death-inducing DFFA-like effector c##AF303893|CIDEC|63924|cell death-inducing DFFA-like effector c##AY364640|CIDEC|63924|cell death-inducing DFFA-like effector c##NM_022094|CIDEC|63924|cell death-inducing DFFA-like effector c##AK024524|CIDEC|63924|cell death-inducing DFFA-like effector c##AK024530|CIDEC|63924|cell death-inducing DFFA-like effector c##NM_001199551|CIDEC|63924|cell death-inducing DFFA-like effector c##NM_001199552|CIDEC|63924|cell death-inducing DFFA-like effector c	0.898876	denovo_WM_21:-27:0.899
chr3	14989907	14990005	reg1000589.p1	7.408	+	TSC_hg19_v1_chr3_-_14989860 AK096279 BC033386	-63	-	BC008609 TSC_hg19_v1_chr3_-_14989656	-319	-	BC056913 TSC_hg19_v1_chr3_-_14989505	-494	-	CU678518 AK024433 AK024702 AK294123 BC003590 TSC_hg19_v1_chr3_-_15106800	116795	-	TSC_hg19_v1_chr3_-_15106823 NM_022497 AK298791	116858	-	AB209673 TSC_hg19_v1_chr3_-_15140645	150678	-	AK096279|LOC100505641|100505641|uncharacterized LOC100505641##BC033386|LOC100505641|100505641|uncharacterized LOC100505641##BC008609|LOC100505641|100505641|uncharacterized LOC100505641##BC056913|LOC100505641|100505641|uncharacterized LOC100505641##AK024433|MRPS25|64432|mitochondrial ribosomal protein S25##AK024702|MRPS25|64432|mitochondrial ribosomal protein S25##AK294123|MRPS25|64432|mitochondrial ribosomal protein S25##BC003590|MRPS25|64432|mitochondrial ribosomal protein S25##NM_022497|MRPS25|64432|mitochondrial ribosomal protein S25##AK298791|MRPS25|64432|mitochondrial ribosomal protein S25##AB209673|ZFYVE20|64145|zinc finger, FYVE domain containing 20	0.959875	denovo_WM_21:48:0.960
chr19	36545638	36545787	reg1000599.p1	7.392	+	AK057453 TSC_hg19_v1_chr19_-_36545655 AK093048 AX747884 NM_152658	-58	-	TSC_hg19_v1_chr19_-_36545309 BC072416	-398	-	CU687224 TSC_hg19_v1_chr19_-_36545138 AK297630 AK296640 BC046207	-510	-	TSC_hg19_v1_chr19_+_36545770 AK090617 AX746536 NM_001083961 NM_173636	59	+	TSC_hg19_v1_chr19_+_36545814 BC058939	110	+	TSC_hg19_v1_chr19_+_36545864 BC151839 BX647726	154	+	AK057453|THAP8|199745|THAP domain containing 8##AK093048|THAP8|199745|THAP domain containing 8##NM_152658|THAP8|199745|THAP domain containing 8##BC072416|THAP8|199745|THAP domain containing 8##AK297630|THAP8|199745|THAP domain containing 8##AK296640|THAP8|199745|THAP domain containing 8##BC046207|THAP8|199745|THAP domain containing 8##AK090617|WDR62|284403|WD repeat domain 62##NM_001083961|WDR62|284403|WD repeat domain 62##NM_173636|WDR62|284403|WD repeat domain 62##BC058939|WDR62|284403|WD repeat domain 62##BC151839|WDR62|284403|WD repeat domain 62##BX647726|WDR62|284403|WD repeat domain 62	2.067157	denovo_WM_21:-6:0.725	denovo_WM_21:25:0.894	denovo_WM_21:53:0.449
chr5	176778875	176778989	reg1000488.p1	7.377	+	TSC_hg19_v1_chr5_-_176778684 AK308027 NM_006816	-149	-	TSC_hg19_v1_chr5_-_176778666 AK292099 BC017263	-267	-	TSC_hg19_v1_chr5_-_176778656 AK301607	-276	-	AK123382 NM_006480 TSC_hg19_v1_chr5_+_176784882 BC014094	5950	+	TSC_hg19_v1_chr5_+_176784947 AB590533	6053	+	TSC_hg19_v1_chr5_+_176794314 AK098150	15381	+	AK308027|LMAN2|10960|lectin, mannose-binding 2##NM_006816|LMAN2|10960|lectin, mannose-binding 2##AK292099|LMAN2|10960|lectin, mannose-binding 2##BC017263|LMAN2|10960|lectin, mannose-binding 2##AK301607|LMAN2|10960|lectin, mannose-binding 2##AK123382|RGS14|10636|regulator of G-protein signaling 14##NM_006480|RGS14|10636|regulator of G-protein signaling 14##BC014094|RGS14|10636|regulator of G-protein signaling 14##AK098150|RGS14|10636|regulator of G-protein signaling 14	0.894148	denovo_WM_21:11:0.894
chr3	51422521	51422656	reg1000513.p1	7.376	+	AY254099 NM_004947 AY145303	-709906	+	TSC_hg19_v1_chr3_+_50654932 AK313565 U43784 AB528893 EU832627 EU832702 CU675717 AB451303 AB451434	-767656	+	BC001662 BC010407 TSC_hg19_v1_chr3_+_50654611 BC007591 U09578	-767961	+	NM_006010 TSC_hg19_v1_chr3_+_51422691	103	+	TSC_hg19_v1_chr3_+_51422721 BC113588 BC113590 AK292243 BC007282 BT007110 EU832655 EU832733 BC033055	193	+	NM_013286 TSC_hg19_v1_chr3_+_51428706	6114	+	AY254099|DOCK3|1795|dedicator of cytokinesis 3##NM_004947|DOCK3|1795|dedicator of cytokinesis 3##AY145303|DOCK3|1795|dedicator of cytokinesis 3##AK313565|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##U43784|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##EU832627|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##EU832702|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##AB451303|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##AB451434|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##BC001662|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##BC010407|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##BC007591|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##U09578|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##NM_006010|MANF|7873|mesencephalic astrocyte-derived neurotrophic factor##BC113588|MANF|7873|mesencephalic astrocyte-derived neurotrophic factor##BC113590|MANF|7873|mesencephalic astrocyte-derived neurotrophic factor##AK292243|MANF|7873|mesencephalic astrocyte-derived neurotrophic factor##BC007282|MANF|7873|mesencephalic astrocyte-derived neurotrophic factor##BT007110|MANF|7873|mesencephalic astrocyte-derived neurotrophic factor##EU832655|MANF|7873|mesencephalic astrocyte-derived neurotrophic factor##EU832733|MANF|7873|mesencephalic astrocyte-derived neurotrophic factor##BC033055|MANF|7873|mesencephalic astrocyte-derived neurotrophic factor##NM_013286|RBM15B|29890|RNA binding motif protein 15B	1.508715	denovo_WM_21:-21:0.908	denovo_WM_21:30:0.530
chr5	179125779	179125905	reg1000399.p1	7.374	+	TSC_hg19_v1_chr5_+_179125381 AK294702	-408	+	NM_001164444	-17868	-	BC043435 BC040992 BC130442 BC130444 BC144274 BC144275 NM_001142306	-53817	-	TSC_hg19_v1_chr5_+_179125927 NM_001024649 NM_001746	22	+	AK129990 TSC_hg19_v1_chr5_+_179125977	135	+	TSC_hg19_v1_chr5_+_179125982 AK304420	144	+	AK294702|CANX|821|calnexin##NM_001164444|CBY3|646019|chibby homolog 3 (Drosophila)##BC043435|C5orf60|285679|chromosome 5 open reading frame 60##BC040992|C5orf60|285679|chromosome 5 open reading frame 60##BC130442|C5orf60|285679|chromosome 5 open reading frame 60##BC130444|C5orf60|285679|chromosome 5 open reading frame 60##BC144274|C5orf60|285679|chromosome 5 open reading frame 60##BC144275|C5orf60|285679|chromosome 5 open reading frame 60##NM_001142306|C5orf60|285679|chromosome 5 open reading frame 60##NM_001024649|CANX|821|calnexin##NM_001746|CANX|821|calnexin##AK129990|CANX|821|calnexin##AK304420|CANX|821|calnexin	0.027221	
chr6	36165074	36165220	reg1000510.p1	7.372	+	TSC_hg19_v1_chr6_-_36164979 BC042825	-163	-	TSC_hg19_v1_chr6_+_36164569 AB033112 NM_015695	-587	+	NM_002754 TSC_hg19_v1_chr6_+_36098292 AK308018 BC085196 AF004709 BC000433 BC001641 BC004428 Y10488 AF092535 U93232 AF100546 AB451221 AB451344 AB463892 BT007221 CR536490 CR541687 DQ891372 DQ894551 EU832156 EU832250 AK222922	-66833	+	AK096074 NM_173676 BC103905 BC103906 BC103907 NM_001145716	45814	+	AM182887 FJ457781 NM_001145717	73089	+	BC140873 BX648558 NM_001010903 TSC_hg19_v1_chr6_-_36304663	139478	-	AB033112|BRPF3|27154|bromodomain and PHD finger containing, 3##NM_015695|BRPF3|27154|bromodomain and PHD finger containing, 3##NM_002754|MAPK13|5603|mitogen-activated protein kinase 13##AK308018|MAPK13|5603|mitogen-activated protein kinase 13##BC085196|MAPK13|5603|mitogen-activated protein kinase 13##AF004709|MAPK13|5603|mitogen-activated protein kinase 13##BC000433|MAPK13|5603|mitogen-activated protein kinase 13##BC001641|MAPK13|5603|mitogen-activated protein kinase 13##BC004428|MAPK13|5603|mitogen-activated protein kinase 13##Y10488|MAPK13|5603|mitogen-activated protein kinase 13##AF092535|MAPK13|5603|mitogen-activated protein kinase 13##U93232|MAPK13|5603|mitogen-activated protein kinase 13##AF100546|MAPK13|5603|mitogen-activated protein kinase 13##AB451221|MAPK13|5603|mitogen-activated protein kinase 13##AB451344|MAPK13|5603|mitogen-activated protein kinase 13##BT007221|MAPK13|5603|mitogen-activated protein kinase 13##CR536490|MAPK13|5603|mitogen-activated protein kinase 13##CR541687|MAPK13|5603|mitogen-activated protein kinase 13##DQ891372|MAPK13|5603|mitogen-activated protein kinase 13##DQ894551|MAPK13|5603|mitogen-activated protein kinase 13##EU832156|MAPK13|5603|mitogen-activated protein kinase 13##EU832250|MAPK13|5603|mitogen-activated protein kinase 13##AK222922|MAPK13|5603|mitogen-activated protein kinase 13##AK096074|PNPLA1|285848|patatin-like phospholipase domain containing 1##NM_173676|PNPLA1|285848|patatin-like phospholipase domain containing 1##BC103905|PNPLA1|285848|patatin-like phospholipase domain containing 1##BC103906|PNPLA1|285848|patatin-like phospholipase domain containing 1##BC103907|PNPLA1|285848|patatin-like phospholipase domain containing 1##NM_001145716|PNPLA1|285848|patatin-like phospholipase domain containing 1##AM182887|PNPLA1|285848|patatin-like phospholipase domain containing 1##FJ457781|PNPLA1|285848|patatin-like phospholipase domain containing 1##NM_001145717|PNPLA1|285848|patatin-like phospholipase domain containing 1##BC140873|C6orf222|389384|chromosome 6 open reading frame 222##BX648558|C6orf222|389384|chromosome 6 open reading frame 222##NM_001010903|C6orf222|389384|chromosome 6 open reading frame 222	0.192709	
chr11	71823415	71823554	reg1000602.p1	7.371	+	TSC_hg19_v1_chr11_-_71814398 NM_017907	-9083	-	TSC_hg19_v1_chr11_-_71814344 AK300681	-9142	-	BC001706 TSC_hg19_v1_chr11_-_71814323 AK000632 AF289583	-9171	-	TSC_hg19_v1_chr11_-_71823742 AK311146 AK222622 BC005156 BC005393 AF077206 NM_014042 AL080071	297	-	BC030285 NM_000804 BC126398	23292	+	J05013 NM_016724 NM_016725 BC002947 AK223527 M28099	77207	+	NM_017907|LAMTOR1|55004|late endosomal/lysosomal adaptor, MAPK and MTOR activator 1##AK300681|LAMTOR1|55004|late endosomal/lysosomal adaptor, MAPK and MTOR activator 1##BC001706|LAMTOR1|55004|late endosomal/lysosomal adaptor, MAPK and MTOR activator 1##AK000632|LAMTOR1|55004|late endosomal/lysosomal adaptor, MAPK and MTOR activator 1##AF289583|LAMTOR1|55004|late endosomal/lysosomal adaptor, MAPK and MTOR activator 1##AK311146|C11orf51|25906|chromosome 11 open reading frame 51##AK222622|C11orf51|25906|chromosome 11 open reading frame 51##BC005156|C11orf51|25906|chromosome 11 open reading frame 51##BC005393|C11orf51|25906|chromosome 11 open reading frame 51##AF077206|C11orf51|25906|chromosome 11 open reading frame 51##NM_014042|C11orf51|25906|chromosome 11 open reading frame 51##AL080071|C11orf51|25906|chromosome 11 open reading frame 51##BC030285|FOLR3|2352|folate receptor 3 (gamma)##NM_000804|FOLR3|2352|folate receptor 3 (gamma)##BC126398|FOLR3|2352|folate receptor 3 (gamma)##J05013|FOLR1|2348|folate receptor 1 (adult)##NM_016724|FOLR1|2348|folate receptor 1 (adult)##NM_016725|FOLR1|2348|folate receptor 1 (adult)##BC002947|FOLR1|2348|folate receptor 1 (adult)##AK223527|FOLR1|2348|folate receptor 1 (adult)##M28099|FOLR1|2348|folate receptor 1 (adult)	0.38308	denovo_WM_21:75:0.368
chr14	55658292	55658412	reg1000464.p1	7.368	+	TSC_hg19_v1_chr14_-_55658298 BX248255 D13633 AK291847 AK299338 BC010658 AK297480 AB076695 NM_001146015 NM_014750	-52	-	TSC_hg19_v1_chr14_-_55650349 BT007344	-7946	-	TSC_hg19_v1_chr14_+_55595969 AB006780 BC053667 BC068068 M36682 BC001120 M35368 M57710	-62367	+	NM_017943 AK092879 AX747787 TSC_hg19_v1_chr14_+_55738097 BC109120 BC109121	79707	+	TSC_hg19_v1_chr14_+_55738114 BX248268 BC095482	79806	+	NM_152231	80519	+	BX248255|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##D13633|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##AK291847|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##AK299338|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##BC010658|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##AK297480|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##AB076695|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##NM_001146015|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##NM_014750|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##BT007344|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##AB006780|LGALS3|3958|lectin, galactoside-binding, soluble, 3##BC053667|LGALS3|3958|lectin, galactoside-binding, soluble, 3##BC068068|LGALS3|3958|lectin, galactoside-binding, soluble, 3##M36682|LGALS3|3958|lectin, galactoside-binding, soluble, 3##BC001120|LGALS3|3958|lectin, galactoside-binding, soluble, 3##M35368|LGALS3|3958|lectin, galactoside-binding, soluble, 3##M57710|LGALS3|3958|lectin, galactoside-binding, soluble, 3##NM_017943|FBXO34|55030|F-box protein 34##AK092879|FBXO34|55030|F-box protein 34##BC109120|FBXO34|55030|F-box protein 34##BC109121|FBXO34|55030|F-box protein 34##BX248268|FBXO34|55030|F-box protein 34##BC095482|FBXO34|55030|F-box protein 34##NM_152231|FBXO34|55030|F-box protein 34	0.96561	denovo_WM_21:34:0.819
chr17	80250663	80250813	reg1000593.p2	7.367	+	TSC_hg19_v1_chr17_-_80231580 BC003558 BC015775 AK291758 AK295638 AK303365 NM_001893 NM_139062	-19158	-	TSC_hg19_v1_chr17_-_80231315 AB091044 AK296969	-19445	-	TSC_hg19_v1_chr17_-_80231267 AB209463 CU677441 CU678502 EU832350 EU832435 AB527595	-19485	-	BT006696 DQ890740 DQ892590 DQ893911 DQ895810 AK298096 AK310061 BC009293 BC013297 X06180 AK223465 AY935534 AY935535 AY935536 AY935537 AK310558 NM_006137	24686	-	TSC_hg19_v1_chr17_-_80291610 AK223068 BC017716	40875	-	AK312980 U77643 TSC_hg19_v1_chr17_-_80291643 AK223104	40908	-	BC003558|CSNK1D|1453|casein kinase 1, delta##BC015775|CSNK1D|1453|casein kinase 1, delta##AK291758|CSNK1D|1453|casein kinase 1, delta##AK295638|CSNK1D|1453|casein kinase 1, delta##AK303365|CSNK1D|1453|casein kinase 1, delta##NM_001893|CSNK1D|1453|casein kinase 1, delta##NM_139062|CSNK1D|1453|casein kinase 1, delta##AB091044|CSNK1D|1453|casein kinase 1, delta##AK296969|CSNK1D|1453|casein kinase 1, delta##AB209463|CSNK1D|1453|casein kinase 1, delta##EU832350|CSNK1D|1453|casein kinase 1, delta##EU832435|CSNK1D|1453|casein kinase 1, delta##BT006696|CD7|924|CD7 molecule##DQ890740|CD7|924|CD7 molecule##DQ892590|CD7|924|CD7 molecule##DQ893911|CD7|924|CD7 molecule##DQ895810|CD7|924|CD7 molecule##AK298096|CD7|924|CD7 molecule##AK310061|CD7|924|CD7 molecule##BC009293|CD7|924|CD7 molecule##BC013297|CD7|924|CD7 molecule##X06180|CD7|924|CD7 molecule##AK223465|CD7|924|CD7 molecule##AY935534|CD7|924|CD7 molecule##AY935535|CD7|924|CD7 molecule##AY935536|CD7|924|CD7 molecule##AY935537|CD7|924|CD7 molecule##AK310558|CD7|924|CD7 molecule##NM_006137|CD7|924|CD7 molecule##AK223068|SECTM1|6398|secreted and transmembrane 1##BC017716|SECTM1|6398|secreted and transmembrane 1##AK312980|SECTM1|6398|secreted and transmembrane 1##U77643|SECTM1|6398|secreted and transmembrane 1##AK223104|SECTM1|6398|secreted and transmembrane 1	1.409983	denovo_WM_21:-30:0.695	denovo_WM_21:-45:0.695
chr19	18303594	18303745	reg1000073.p1	7.367	+	TSC_hg19_v1_chr19_+_18284633 AB590284 CU676848 CU689078 DQ884410 DQ892016 DQ895206	-19028	+	TSC_hg19_v1_chr19_+_18284622 BC021136 BC031020 AF097362	-19048	+	NM_006332 TSC_hg19_v1_chr19_+_18284600 AB049659 AK291551	-19078	+	TSC_hg19_v1_chr19_+_18304077 NM_032683 BC093008 BC005064 BC028146 AF320622 AF416712 AK094091	366	+	M28210 TSC_hg19_v1_chr19_-_18314858 AF254795 BC011782 AK293467 AK289559 NM_002866	11135	-	NM_001098819 U88712	31633	-	DQ884410|IFI30|10437|interferon, gamma-inducible protein 30##DQ892016|IFI30|10437|interferon, gamma-inducible protein 30##DQ895206|IFI30|10437|interferon, gamma-inducible protein 30##BC021136|IFI30|10437|interferon, gamma-inducible protein 30##BC031020|IFI30|10437|interferon, gamma-inducible protein 30##NM_006332|IFI30|10437|interferon, gamma-inducible protein 30##AB049659|IFI30|10437|interferon, gamma-inducible protein 30##AK291551|IFI30|10437|interferon, gamma-inducible protein 30##NM_032683|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##BC093008|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##BC005064|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##BC028146|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##AF320622|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##AF416712|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##AK094091|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##M28210|RAB3A|5864|RAB3A, member RAS oncogene family##AF254795|RAB3A|5864|RAB3A, member RAS oncogene family##BC011782|RAB3A|5864|RAB3A, member RAS oncogene family##AK293467|RAB3A|5864|RAB3A, member RAS oncogene family##AK289559|RAB3A|5864|RAB3A, member RAS oncogene family##NM_002866|RAB3A|5864|RAB3A, member RAS oncogene family##NM_001098819|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##U88712|PDE4C|5143|phosphodiesterase 4C, cAMP-specific	0.07508	
chr20	45035284	45035422	reg1000611.p1	7.364	+	TSC_hg19_v1_chr20_-_45035255 AK299318 AL833406 BX648819 NM_133171 NM_182764	-54	-	TSC_hg19_v1_chr20_-_45035244 AK057032	-111	-	AB058737 TSC_hg19_v1_chr20_-_45035232	-137	-	TSC_hg19_v1_chr20_-_45061554 AK293861	26275	-	AL831934 TSC_hg19_v1_chr20_-_45087948	52578	-	AK001331 AK095611 BC024177 NM_018102 NM_199441 BC026321 TSC_hg19_v1_chr20_-_45142199	106842	-	AK299318|ELMO2|63916|engulfment and cell motility 2##AL833406|ELMO2|63916|engulfment and cell motility 2##BX648819|ELMO2|63916|engulfment and cell motility 2##NM_133171|ELMO2|63916|engulfment and cell motility 2##NM_182764|ELMO2|63916|engulfment and cell motility 2##AK057032|ELMO2|63916|engulfment and cell motility 2##AB058737|ELMO2|63916|engulfment and cell motility 2##AK293861|ELMO2|63916|engulfment and cell motility 2##AL831934|ZNF663|100130934|zinc finger protein 663##AK001331|ZNF334|55713|zinc finger protein 334##AK095611|ZNF334|55713|zinc finger protein 334##BC024177|ZNF334|55713|zinc finger protein 334##NM_018102|ZNF334|55713|zinc finger protein 334##NM_199441|ZNF334|55713|zinc finger protein 334##BC026321|ZNF334|55713|zinc finger protein 334	0.0	
chr17	1588172	1588314	reg1000659.p1	7.360	+	TSC_hg19_v1_chr17_-_1588132 BC000579 BC064370 NM_006445	-89	-	TSC_hg19_v1_chr17_-_1588115 AB007510 AF092565	-135	-	DQ892467 DQ895680 TSC_hg19_v1_chr17_-_1553162 BC031621 AF370391 AJ404317 AK055755 AK314767 AJ278711 NM_031430	-34998	-	NM_001164407	25418	-	BC119720 BC119721 TSC_hg19_v1_chr17_-_1619503 BX648321 BX640650	31245	-	AK298567 NM_001163673 NM_152348 AK091136 AX746799 BC114519 BC114568	31612	+	BC000579|PRPF8|10594|PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae)##BC064370|PRPF8|10594|PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae)##NM_006445|PRPF8|10594|PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae)##AB007510|PRPF8|10594|PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae)##AF092565|PRPF8|10594|PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae)##DQ892467|RILP|83547|Rab interacting lysosomal protein##DQ895680|RILP|83547|Rab interacting lysosomal protein##BC031621|RILP|83547|Rab interacting lysosomal protein##AF370391|RILP|83547|Rab interacting lysosomal protein##AJ404317|RILP|83547|Rab interacting lysosomal protein##AK055755|RILP|83547|Rab interacting lysosomal protein##AK314767|RILP|83547|Rab interacting lysosomal protein##AJ278711|RILP|83547|Rab interacting lysosomal protein##NM_031430|RILP|83547|Rab interacting lysosomal protein##NM_001164407|TLCD2|727910|TLC domain containing 2##BC119720|MIR22HG|84981|MIR22 host gene (non-protein coding)##BC119721|MIR22HG|84981|MIR22 host gene (non-protein coding)##BX648321|MIR22HG|84981|MIR22 host gene (non-protein coding)##BX640650|MIR22HG|84981|MIR22 host gene (non-protein coding)##AK298567|WDR81|124997|WD repeat domain 81##NM_001163673|WDR81|124997|WD repeat domain 81##NM_152348|WDR81|124997|WD repeat domain 81##AK091136|WDR81|124997|WD repeat domain 81##BC114519|WDR81|124997|WD repeat domain 81##BC114568|WDR81|124997|WD repeat domain 81	0.590441	denovo_WM_21:-12:0.590
chr16	30661919	30662048	reg1000596.p1	7.356	+	AK310459 AB065282 BC014000 NM_138447 TSC_hg19_v1_chr16_-_30621684	-40327	-	TSC_hg19_v1_chr16_-_30597103 AK309511 EU446576 AK292465 BC040642 AK298848 AK056692 NM_152458	-65008	-	NM_001024683 NM_145271	-78256	-	TSC_hg19_v1_chr16_+_30662098 CR936781 AK125716	117	+	TSC_hg19_v1_chr16_+_30662286 BC010232 BC050677 NM_024031 BC011573 BC000119 AK074783	282	+	NM_001105079	13794	+	AK310459|ZNF689|115509|zinc finger protein 689##AB065282|ZNF689|115509|zinc finger protein 689##BC014000|ZNF689|115509|zinc finger protein 689##NM_138447|ZNF689|115509|zinc finger protein 689##AK309511|ZNF785|146540|zinc finger protein 785##EU446576|ZNF785|146540|zinc finger protein 785##AK292465|ZNF785|146540|zinc finger protein 785##BC040642|ZNF785|146540|zinc finger protein 785##AK298848|ZNF785|146540|zinc finger protein 785##AK056692|ZNF785|146540|zinc finger protein 785##NM_152458|ZNF785|146540|zinc finger protein 785##NM_001024683|ZNF688|146542|zinc finger protein 688##NM_145271|ZNF688|146542|zinc finger protein 688##CR936781|PRR14|78994|proline rich 14##AK125716|PRR14|78994|proline rich 14##BC010232|PRR14|78994|proline rich 14##BC050677|PRR14|78994|proline rich 14##NM_024031|PRR14|78994|proline rich 14##BC011573|PRR14|78994|proline rich 14##BC000119|PRR14|78994|proline rich 14##AK074783|PRR14|78994|proline rich 14##NM_001105079|FBRS|64319|fibrosin	0.0	
chr2	240322702	240322807	reg1000194.p1	7.356	+	TSC_hg19_v1_chr2_-_240322695 BC039904	-56	-	TSC_hg19_v1_chr2_-_240322657 AB006626 NM_006037	-106	-	BC033168 NM_057179 BC103755 BC017907 AB528459 CU689614	-565991	+	TSC_hg19_v1_chr2_-_240323341 AK308791	594	-	AF453834 TSC_hg19_v1_chr2_-_240964750 CU678462 DQ891011 DQ894191 BC031332 AF087661 AB209440 AK290778 BC003417 AF087854	642007	-	TSC_hg19_v1_chr2_-_240964807 NM_004544	642058	-	BC039904|HDAC4|9759|histone deacetylase 4##AB006626|HDAC4|9759|histone deacetylase 4##NM_006037|HDAC4|9759|histone deacetylase 4##BC033168|TWIST2|117581|twist homolog 2 (Drosophila)##NM_057179|TWIST2|117581|twist homolog 2 (Drosophila)##BC103755|TWIST2|117581|twist homolog 2 (Drosophila)##BC017907|TWIST2|117581|twist homolog 2 (Drosophila)##AK308791|HDAC4|9759|histone deacetylase 4##AF453834|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##DQ891011|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##DQ894191|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##BC031332|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AF087661|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AB209440|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AK290778|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##BC003417|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AF087854|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##NM_004544|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa	0.02812	
chr19	27865119	27865219	reg1000401.p2	7.353	+	TSC_hg19_v1_chr19_+_24269988 AF054180 NM_203282 BC056243 AK291286 BC043147 BC139749	-3595200	+	TSC_hg19_v1_chr19_+_24216256 AK092150 AK092080 AK303431	-3648913	+	TSC_hg19_v1_chr19_+_24097711 NM_001244038 AX721133 BC046415 AB593087	-3767475	+	TSC_hg19_v1_chr19_+_28284377 BC024732	419219	+	TSC_hg19_v1_chr19_-_28284831 AK311452	419664	-	TSC_hg19_v1_chr19_+_28284946 AK095009	419759	+	AF054180|ZNF254|9534|zinc finger protein 254##NM_203282|ZNF254|9534|zinc finger protein 254##BC056243|ZNF254|9534|zinc finger protein 254##AK291286|ZNF254|9534|zinc finger protein 254##BC043147|ZNF254|9534|zinc finger protein 254##BC139749|ZNF254|9534|zinc finger protein 254##AK303431|ZNF254|9534|zinc finger protein 254##NM_001244038|ZNF726|730087|zinc finger protein 726##BC046415|ZNF726|730087|zinc finger protein 726##AK311452|LOC148189|148189|uncharacterized LOC148189	0.0	
chr14	23476384	23476523	reg1000730.p1	7.347	+	TSC_hg19_v1_chr14_-_23451806 BC034968 NM_032876	-24678	-	AK096128 NM_198086	-30022	-	AK025567 TSC_hg19_v1_chr14_-_23445979	-30518	-	BC014299 BX161507 BX161383 BX161417 AK023026 AK022216 NM_001130706 NM_001130708 NM_021944	2890	-	BT006777 S74378 D29011 BC004146 BX248299 AB528985 CU691272 TSC_hg19_v1_chr14_-_23504095 AK300714 BX538001 BC107720 BC057840 AK311895 AK225888	27569	-	NM_001144932 NM_002797 NM_001130725	27937	-	BC034968|AJUBA|84962|ajuba LIM protein##NM_032876|AJUBA|84962|ajuba LIM protein##AK096128|AJUBA|84962|ajuba LIM protein##NM_198086|AJUBA|84962|ajuba LIM protein##AK025567|AJUBA|84962|ajuba LIM protein##BC014299|C14orf93|60686|chromosome 14 open reading frame 93##BX161507|C14orf93|60686|chromosome 14 open reading frame 93##BX161383|C14orf93|60686|chromosome 14 open reading frame 93##BX161417|C14orf93|60686|chromosome 14 open reading frame 93##AK023026|C14orf93|60686|chromosome 14 open reading frame 93##AK022216|C14orf93|60686|chromosome 14 open reading frame 93##NM_001130706|C14orf93|60686|chromosome 14 open reading frame 93##NM_001130708|C14orf93|60686|chromosome 14 open reading frame 93##NM_021944|C14orf93|60686|chromosome 14 open reading frame 93##BT006777|PSMB5|5693|proteasome (prosome, macropain) subunit, beta type, 5##S74378|PSMB5|5693|proteasome (prosome, macropain) subunit, beta type, 5##BX248299|PSMB5|5693|proteasome (prosome, macropain) subunit, beta type, 5##AK300714|PSMB5|5693|proteasome (prosome, macropain) subunit, beta type, 5##BX538001|PSMB5|5693|proteasome (prosome, macropain) subunit, beta type, 5##BC107720|PSMB5|5693|proteasome (prosome, macropain) subunit, beta type, 5##BC057840|PSMB5|5693|proteasome (prosome, macropain) subunit, beta type, 5##AK311895|PSMB5|5693|proteasome (prosome, macropain) subunit, beta type, 5##AK225888|PSMB5|5693|proteasome (prosome, macropain) subunit, beta type, 5##NM_001144932|PSMB5|5693|proteasome (prosome, macropain) subunit, beta type, 5##NM_002797|PSMB5|5693|proteasome (prosome, macropain) subunit, beta type, 5##NM_001130725|PSMB5|5693|proteasome (prosome, macropain) subunit, beta type, 5	0.068541	
chr16	53537414	53537545	reg1000297.p2	7.345	+	TSC_hg19_v1_chr16_-_53537122 AK303503 BC001134 BC095401 AK222743 AK023320 NM_001012398 NM_022476	-339	-	TSC_hg19_v1_chr16_+_53479685 BX537767	-57791	+	TSC_hg19_v1_chr16_+_53469560 AK300047	-67933	+	TSC_hg19_v1_chr16_-_53737760 BC136433 AK096333 AK308390 BC017977 CR749645 AK307929 EF565106 NM_001127897 NM_015272 AK304790	200278	-	NM_001080432	200395	+	TSC_hg19_v1_chr16_+_53738067 AK096554 AB051539 AK295196	200589	+	AK303503|AKTIP|64400|AKT interacting protein##BC001134|AKTIP|64400|AKT interacting protein##BC095401|AKTIP|64400|AKT interacting protein##AK222743|AKTIP|64400|AKT interacting protein##AK023320|AKTIP|64400|AKT interacting protein##NM_001012398|AKTIP|64400|AKT interacting protein##NM_022476|AKTIP|64400|AKT interacting protein##BX537767|RBL2|5934|retinoblastoma-like 2 (p130)##AK300047|RBL2|5934|retinoblastoma-like 2 (p130)##BC136433|RPGRIP1L|23322|RPGRIP1-like##AK096333|RPGRIP1L|23322|RPGRIP1-like##AK308390|RPGRIP1L|23322|RPGRIP1-like##BC017977|RPGRIP1L|23322|RPGRIP1-like##CR749645|RPGRIP1L|23322|RPGRIP1-like##AK307929|RPGRIP1L|23322|RPGRIP1-like##EF565106|RPGRIP1L|23322|RPGRIP1-like##NM_001127897|RPGRIP1L|23322|RPGRIP1-like##NM_015272|RPGRIP1L|23322|RPGRIP1-like##AK304790|RPGRIP1L|23322|RPGRIP1-like##NM_001080432|FTO|79068|fat mass and obesity associated##AK096554|FTO|79068|fat mass and obesity associated##AB051539|FTO|79068|fat mass and obesity associated##AK295196|FTO|79068|fat mass and obesity associated	0.0	
chr11	134093870	134094009	reg1000454.p1	7.339	+	TSC_hg19_v1_chr11_-_134093881 BC098398	-58	-	TSC_hg19_v1_chr11_-_134093862 D29954	-93	-	AK075309 AK125071 AK225666 TSC_hg19_v1_chr11_+_133938965 BC057284 AJ344431 AF356518 BC012147 BC010690	-154967	+	TSC_hg19_v1_chr11_-_134094442 AK124878 NM_015261	503	-	TSC_hg19_v1_chr11_+_134094486 BC098386	552	+	TSC_hg19_v1_chr11_+_134094548 AF452718 NM_052875	613	+	BC098398|NCAPD3|23310|non-SMC condensin II complex, subunit D3##D29954|NCAPD3|23310|non-SMC condensin II complex, subunit D3##AK075309|JAM3|83700|junctional adhesion molecule 3##AK125071|JAM3|83700|junctional adhesion molecule 3##AK225666|JAM3|83700|junctional adhesion molecule 3##BC057284|JAM3|83700|junctional adhesion molecule 3##AJ344431|JAM3|83700|junctional adhesion molecule 3##AF356518|JAM3|83700|junctional adhesion molecule 3##BC012147|JAM3|83700|junctional adhesion molecule 3##BC010690|JAM3|83700|junctional adhesion molecule 3##AK124878|NCAPD3|23310|non-SMC condensin II complex, subunit D3##NM_015261|NCAPD3|23310|non-SMC condensin II complex, subunit D3##BC098386|VPS26B|112936|vacuolar protein sorting 26 homolog B (S. pombe)##AF452718|VPS26B|112936|vacuolar protein sorting 26 homolog B (S. pombe)##NM_052875|VPS26B|112936|vacuolar protein sorting 26 homolog B (S. pombe)	1.605559	denovo_WM_21:31:0.686	denovo_WM_21:-33:0.844
chr12	96252619	96252737	reg1000551.p1	7.333	+	BC136798 BC136799 AF278532 NM_021229 AF119916 TSC_hg19_v1_chr12_-_96184542	-68152	-	TSC_hg19_v1_chr12_-_96184346 AF297711 AK226070 AK315796	-68309	-	AL136825 NM_032147	-307434	-	TSC_hg19_v1_chr12_+_96252729 NM_003095 BC002505 X85372 AK311752 BC063397	55	+	TSC_hg19_v1_chr12_+_96252771 BC128452 BC128453	109	+	BC030712 BC095479 BC047659 AK097408 NM_182496	83722	-	BC136798|NTN4|59277|netrin 4##BC136799|NTN4|59277|netrin 4##AF278532|NTN4|59277|netrin 4##NM_021229|NTN4|59277|netrin 4##AF119916|NTN4|59277|netrin 4##AF297711|NTN4|59277|netrin 4##AK226070|NTN4|59277|netrin 4##AK315796|NTN4|59277|netrin 4##AL136825|USP44|84101|ubiquitin specific peptidase 44##NM_032147|USP44|84101|ubiquitin specific peptidase 44##NM_003095|SNRPF|6636|small nuclear ribonucleoprotein polypeptide F##BC002505|SNRPF|6636|small nuclear ribonucleoprotein polypeptide F##X85372|SNRPF|6636|small nuclear ribonucleoprotein polypeptide F##AK311752|SNRPF|6636|small nuclear ribonucleoprotein polypeptide F##BC063397|SNRPF|6636|small nuclear ribonucleoprotein polypeptide F##BC128452|SNRPF|6636|small nuclear ribonucleoprotein polypeptide F##BC128453|SNRPF|6636|small nuclear ribonucleoprotein polypeptide F##BC095479|CCDC38|120935|coiled-coil domain containing 38##BC047659|CCDC38|120935|coiled-coil domain containing 38##AK097408|CCDC38|120935|coiled-coil domain containing 38##NM_182496|CCDC38|120935|coiled-coil domain containing 38	0.869566	denovo_WM_21:6:0.742
chr3	156273036	156273151	reg1000479.p1	7.332	+	TSC_hg19_v1_chr3_-_156272919 AF087907 AF110647 BC017203 NM_007107	-150	-	TSC_hg19_v1_chr3_-_156272894 BT006669 DQ892572 DQ895788 AK304364 AK312935	-212	-	NM_172159 BC043166 AK127240	-264283	+	NM_015508	119111	+	AK291261 TSC_hg19_v1_chr3_+_156392402 BX537965 BC050350	119309	+	CR749647 NM_001184717	119621	+	AF087907|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##AF110647|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##BC017203|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##NM_007107|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##BT006669|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##DQ892572|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##DQ895788|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##AK304364|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##AK312935|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##NM_172159|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##BC043166|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##AK127240|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##NM_015508|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##AK291261|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##BX537965|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##BC050350|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##CR749647|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##NM_001184717|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase	0.0	
chr2	198669194	198669286	reg1000657.p2	7.321	+	NM_197970 AK302817	-18254	-	AF272858 BC033674 AK098824 AK058099 NM_033030	-19200	-	NM_138395 TSC_hg19_v1_chr2_+_198570134 AB107013 BC026361 BC126294 AK098121 AK301252 BC009115 HQ258326	-99111	+	TSC_hg19_v1_chr2_+_198669316 AK127514 NM_006226	130	+	TSC_hg19_v1_chr2_-_200213802 AK025127	1544610	-	TSC_hg19_v1_chr2_-_200320780 EU446695 BC098136 BC099723 BC103492 BC103500	1651562	-	NM_197970|BOLL|66037|bol, boule-like (Drosophila)##AK302817|BOLL|66037|bol, boule-like (Drosophila)##AF272858|BOLL|66037|bol, boule-like (Drosophila)##BC033674|BOLL|66037|bol, boule-like (Drosophila)##AK098824|BOLL|66037|bol, boule-like (Drosophila)##AK058099|BOLL|66037|bol, boule-like (Drosophila)##NM_033030|BOLL|66037|bol, boule-like (Drosophila)##NM_138395|MARS2|92935|methionyl-tRNA synthetase 2, mitochondrial##AB107013|MARS2|92935|methionyl-tRNA synthetase 2, mitochondrial##BC026361|MARS2|92935|methionyl-tRNA synthetase 2, mitochondrial##BC126294|MARS2|92935|methionyl-tRNA synthetase 2, mitochondrial##AK098121|MARS2|92935|methionyl-tRNA synthetase 2, mitochondrial##AK301252|MARS2|92935|methionyl-tRNA synthetase 2, mitochondrial##BC009115|MARS2|92935|methionyl-tRNA synthetase 2, mitochondrial##HQ258326|MARS2|92935|methionyl-tRNA synthetase 2, mitochondrial##AK127514|PLCL1|5334|phospholipase C-like 1##NM_006226|PLCL1|5334|phospholipase C-like 1##AK025127|SATB2|23314|SATB homeobox 2##EU446695|SATB2|23314|SATB homeobox 2##BC098136|SATB2|23314|SATB homeobox 2##BC099723|SATB2|23314|SATB homeobox 2##BC103492|SATB2|23314|SATB homeobox 2##BC103500|SATB2|23314|SATB homeobox 2	0.0	
chr11	13690033	13690182	reg1000520.p1	7.318	+	V00597 BC096142 BC096143 BC096144 BC096145 NM_000315	-172562	-	AK298226 TSC_hg19_v1_chr11_-_13484770 AK310935 AK292392 AK095946 BC005071 AL832981 NM_032320 AF329102	-205316	-	TSC_hg19_v1_chr11_+_13299403 BC031214 BC034314	-390652	+	TSC_hg19_v1_chr11_+_13690212 NM_032228 AY358784	83	+	CR936619 TSC_hg19_v1_chr11_+_13690235	130	+	TSC_hg19_v1_chr11_+_13690255 AK315527 AK026381	146	+	V00597|PTH|5741|parathyroid hormone##BC096142|PTH|5741|parathyroid hormone##BC096143|PTH|5741|parathyroid hormone##BC096144|PTH|5741|parathyroid hormone##BC096145|PTH|5741|parathyroid hormone##NM_000315|PTH|5741|parathyroid hormone##AK298226|BTBD10|84280|BTB (POZ) domain containing 10##AK310935|BTBD10|84280|BTB (POZ) domain containing 10##AK292392|BTBD10|84280|BTB (POZ) domain containing 10##AK095946|BTBD10|84280|BTB (POZ) domain containing 10##BC005071|BTBD10|84280|BTB (POZ) domain containing 10##AL832981|BTBD10|84280|BTB (POZ) domain containing 10##NM_032320|BTBD10|84280|BTB (POZ) domain containing 10##AF329102|BTBD10|84280|BTB (POZ) domain containing 10##BC031214|ARNTL|406|aryl hydrocarbon receptor nuclear translocator-like##NM_032228|FAR1|84188|fatty acyl CoA reductase 1##AY358784|FAR1|84188|fatty acyl CoA reductase 1##CR936619|FAR1|84188|fatty acyl CoA reductase 1##AK315527|FAR1|84188|fatty acyl CoA reductase 1##AK026381|FAR1|84188|fatty acyl CoA reductase 1	1.818037	denovo_WM_21:7:0.960	denovo_WM_21:100:0.858
chr22	43411247	43411397	reg1000776.p1	7.297	+	TSC_hg19_v1_chr22_-_43411156 NM_001184970	-145	-	TSC_hg19_v1_chr22_-_43411136 AF128536	-183	-	AL136845 NM_001184971	-55436	-	TSC_hg19_v1_chr22_-_43485410 AF104927 AF173935 AK315658 BC009058 AK095996 BC014968 AL136687 NM_012263	74065	-	NM_001197 TSC_hg19_v1_chr22_+_43506755 BC001599 U49730 U34584	95450	+	TSC_hg19_v1_chr22_-_43539355 BC030985 AL359401 AL359403 AK314059	128030	-	NM_001184970|PACSIN2|11252|protein kinase C and casein kinase substrate in neurons 2##AF128536|PACSIN2|11252|protein kinase C and casein kinase substrate in neurons 2##AL136845|PACSIN2|11252|protein kinase C and casein kinase substrate in neurons 2##NM_001184971|PACSIN2|11252|protein kinase C and casein kinase substrate in neurons 2##AF104927|TTLL1|25809|tubulin tyrosine ligase-like family, member 1##AF173935|TTLL1|25809|tubulin tyrosine ligase-like family, member 1##AK315658|TTLL1|25809|tubulin tyrosine ligase-like family, member 1##BC009058|TTLL1|25809|tubulin tyrosine ligase-like family, member 1##AK095996|TTLL1|25809|tubulin tyrosine ligase-like family, member 1##BC014968|TTLL1|25809|tubulin tyrosine ligase-like family, member 1##AL136687|TTLL1|25809|tubulin tyrosine ligase-like family, member 1##NM_012263|TTLL1|25809|tubulin tyrosine ligase-like family, member 1##NM_001197|BIK|638|BCL2-interacting killer (apoptosis-inducing)##BC001599|BIK|638|BCL2-interacting killer (apoptosis-inducing)##U49730|BIK|638|BCL2-interacting killer (apoptosis-inducing)##U34584|BIK|638|BCL2-interacting killer (apoptosis-inducing)##BC030985|MCAT|27349|malonyl CoA:ACP acyltransferase (mitochondrial)##AL359401|MCAT|27349|malonyl CoA:ACP acyltransferase (mitochondrial)##AL359403|MCAT|27349|malonyl CoA:ACP acyltransferase (mitochondrial)##AK314059|MCAT|27349|malonyl CoA:ACP acyltransferase (mitochondrial)	0.015466	
chr2	55277710	55277840	reg1000597.p1	7.296	+	TSC_hg19_v1_chr2_-_55277709 AY123246 NM_020532 NM_153828 NM_207520	-60	-	TSC_hg19_v1_chr2_-_55277672 AB040462 AB040463 AY102277 AY102278 AY102279 BC016165 BC068991 BC150182 BC152555	-93	-	TSC_hg19_v1_chr2_-_55277661 AK075039	-113	-	NM_001135592	181263	+	AK315683 TSC_hg19_v1_chr2_-_55459408 AK056000 BC029502 NM_152385	181652	-	NM_002954	181765	+	AY123246|RTN4|57142|reticulon 4##NM_020532|RTN4|57142|reticulon 4##NM_153828|RTN4|57142|reticulon 4##NM_207520|RTN4|57142|reticulon 4##AB040462|RTN4|57142|reticulon 4##AB040463|RTN4|57142|reticulon 4##AY102277|RTN4|57142|reticulon 4##AY102278|RTN4|57142|reticulon 4##AY102279|RTN4|57142|reticulon 4##BC016165|RTN4|57142|reticulon 4##BC068991|RTN4|57142|reticulon 4##BC150182|RTN4|57142|reticulon 4##BC152555|RTN4|57142|reticulon 4##AK075039|RTN4|57142|reticulon 4##NM_001135592|RPS27A|6233|ribosomal protein S27a##AK315683|C2orf63|130162|chromosome 2 open reading frame 63##AK056000|C2orf63|130162|chromosome 2 open reading frame 63##BC029502|C2orf63|130162|chromosome 2 open reading frame 63##NM_152385|C2orf63|130162|chromosome 2 open reading frame 63##NM_002954|RPS27A|6233|ribosomal protein S27a	0.513274	denovo_WM_21:-18:0.489
chr20	3869852	3869977	reg1000403.p1	7.290	+	TSC_hg19_v1_chr20_-_3869721 BC005095 BC012193	-196	-	TSC_hg19_v1_chr20_+_3869593 AF494409 NM_153638	-247	+	AK021791 NM_024960 TSC_hg19_v1_chr20_+_3869569	-382	+	TSC_hg19_v1_chr20_+_3870042 AK310190 AK097796 BC142976 BC009421	142	+	NM_153640 BC107724 BC065019	575	+	AL096778 NM_007219 BC039584 TSC_hg19_v1_chr20_-_3996221 BC000213 BC003141 NM_001134337 NM_001134338 BC032738	126251	-	AF494409|PANK2|80025|pantothenate kinase 2##NM_153638|PANK2|80025|pantothenate kinase 2##AK021791|PANK2|80025|pantothenate kinase 2##NM_024960|PANK2|80025|pantothenate kinase 2##AK310190|PANK2|80025|pantothenate kinase 2##AK097796|PANK2|80025|pantothenate kinase 2##BC142976|PANK2|80025|pantothenate kinase 2##BC009421|PANK2|80025|pantothenate kinase 2##NM_153640|PANK2|80025|pantothenate kinase 2##BC107724|PANK2|80025|pantothenate kinase 2##BC065019|PANK2|80025|pantothenate kinase 2##AL096778|RNF24|11237|ring finger protein 24##NM_007219|RNF24|11237|ring finger protein 24##BC039584|RNF24|11237|ring finger protein 24##BC000213|RNF24|11237|ring finger protein 24##NM_001134337|RNF24|11237|ring finger protein 24##NM_001134338|RNF24|11237|ring finger protein 24	0.922414	denovo_WM_21:-19:0.922
chr3	186288280	186288464	reg1000563.p2	7.290	+	NM_001134415	-41	-	TSC_hg19_v1_chr3_-_186288108 AK124362	-254	-	NM_018138 TSC_hg19_v1_chr3_-_186285140	-3231	-	AK301292 TSC_hg19_v1_chr3_+_186288479 NM_016306 AK075430	98	+	TSC_hg19_v1_chr3_+_186288498 AF277317 AK075300 BC001144 AB028859 AY359043 AF228505 AJ250137 DQ890601 DQ893869 AB463574 BT007063 CR457096	220	+	AK303754 TSC_hg19_v1_chr3_+_186330817	42396	+	NM_001134415|TBCCD1|55171|TBCC domain containing 1##AK124362|TBCCD1|55171|TBCC domain containing 1##NM_018138|TBCCD1|55171|TBCC domain containing 1##AK301292|DNAJB11|51726|DnaJ (Hsp40) homolog, subfamily B, member 11##NM_016306|DNAJB11|51726|DnaJ (Hsp40) homolog, subfamily B, member 11##AK075430|DNAJB11|51726|DnaJ (Hsp40) homolog, subfamily B, member 11##AF277317|DNAJB11|51726|DnaJ (Hsp40) homolog, subfamily B, member 11##AK075300|DNAJB11|51726|DnaJ (Hsp40) homolog, subfamily B, member 11##BC001144|DNAJB11|51726|DnaJ (Hsp40) homolog, subfamily B, member 11##AB028859|DNAJB11|51726|DnaJ (Hsp40) homolog, subfamily B, member 11##AY359043|DNAJB11|51726|DnaJ (Hsp40) homolog, subfamily B, member 11##AF228505|DNAJB11|51726|DnaJ (Hsp40) homolog, subfamily B, member 11##AJ250137|DNAJB11|51726|DnaJ (Hsp40) homolog, subfamily B, member 11##DQ890601|DNAJB11|51726|DnaJ (Hsp40) homolog, subfamily B, member 11##DQ893869|DNAJB11|51726|DnaJ (Hsp40) homolog, subfamily B, member 11##BT007063|DNAJB11|51726|DnaJ (Hsp40) homolog, subfamily B, member 11##CR457096|DNAJB11|51726|DnaJ (Hsp40) homolog, subfamily B, member 11##AK303754|AHSG|197|alpha-2-HS-glycoprotein	1.570853	denovo_WM_21:-27:0.552	denovo_WM_21:51:0.966
chr15	85174530	85174657	reg1000402.p1	7.282	+	TSC_hg19_v1_chr15_+_85144280 AK128624 BC041620 NM_001007072 NM_017894 NM_181877 AK131309 AK291224 AK000602 AY262259 AY279349	-30312	+	NM_001243531	-333352	+	TSC_hg19_v1_chr15_+_84322810 AF237652 NM_207517 BC128389 BC128390 AK092324 AK308845 AX747482	-851766	+	AK090406 TSC_hg19_v1_chr15_-_85197483 AK055578	22879	-	TSC_hg19_v1_chr15_-_85197503 AF161382 AK295372 BC014115 AK027794 AK055729 AK225199	22913	-	TSC_hg19_v1_chr15_-_85197515 AK225068 NM_032856 BC050648 BC063392	22933	-	AK128624|ZSCAN2|54993|zinc finger and SCAN domain containing 2##BC041620|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_001007072|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_017894|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_181877|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK131309|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK291224|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK000602|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AY262259|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AY279349|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_001243531|LOC100505679|100505679|uncharacterized LOC100505679##AF237652|ADAMTSL3|57188|ADAMTS-like 3##NM_207517|ADAMTSL3|57188|ADAMTS-like 3##BC128389|ADAMTSL3|57188|ADAMTS-like 3##BC128390|ADAMTSL3|57188|ADAMTS-like 3##AK092324|ADAMTSL3|57188|ADAMTS-like 3##AK308845|ADAMTSL3|57188|ADAMTS-like 3##AK090406|WDR73|84942|WD repeat domain 73##AK055578|WDR73|84942|WD repeat domain 73##AF161382|WDR73|84942|WD repeat domain 73##AK295372|WDR73|84942|WD repeat domain 73##BC014115|WDR73|84942|WD repeat domain 73##AK027794|WDR73|84942|WD repeat domain 73##AK055729|WDR73|84942|WD repeat domain 73##AK225199|WDR73|84942|WD repeat domain 73##AK225068|WDR73|84942|WD repeat domain 73##NM_032856|WDR73|84942|WD repeat domain 73##BC050648|WDR73|84942|WD repeat domain 73##BC063392|WDR73|84942|WD repeat domain 73	0.04495	
chr15	99395646	99395759	reg1000532.p1	7.275	+	TSC_hg19_v1_chr15_+_99192708 NM_000875 X04434 BC113610 BC113612 BC143721 AB463073 EU826611 EU826612 BC111788	-202946	+	TSC_hg19_v1_chr15_+_99191767 AB425196	-203731	+	AK097062 AK097062 NM_182562	-338092	-	BC104743 BC104744 BC105686 NM_001102612	153135	-	AK058162 NM_001167902	155321	-	TSC_hg19_v1_chr15_+_99645285 BC151243 AB002351 AJ310521 AJ310522 AJ697971 NM_015286 NM_145728 AF359284	249538	+	NM_000875|IGF1R|3480|insulin-like growth factor 1 receptor##X04434|IGF1R|3480|insulin-like growth factor 1 receptor##BC113610|IGF1R|3480|insulin-like growth factor 1 receptor##BC113612|IGF1R|3480|insulin-like growth factor 1 receptor##BC143721|IGF1R|3480|insulin-like growth factor 1 receptor##EU826611|IGF1R|3480|insulin-like growth factor 1 receptor##EU826612|IGF1R|3480|insulin-like growth factor 1 receptor##AB425196|IGF1R|3480|insulin-like growth factor 1 receptor##AK097062|FAM169B|283777|family with sequence similarity 169, member B##AK097062|FAM169B|283777|family with sequence similarity 169, member B##NM_182562|FAM169B|283777|family with sequence similarity 169, member B##BC104743|PGPEP1L|145814|pyroglutamyl-peptidase I-like##BC104744|PGPEP1L|145814|pyroglutamyl-peptidase I-like##BC105686|PGPEP1L|145814|pyroglutamyl-peptidase I-like##NM_001102612|PGPEP1L|145814|pyroglutamyl-peptidase I-like##AK058162|PGPEP1L|145814|pyroglutamyl-peptidase I-like##NM_001167902|PGPEP1L|145814|pyroglutamyl-peptidase I-like##BC151243|SYNM|23336|synemin, intermediate filament protein##AB002351|SYNM|23336|synemin, intermediate filament protein##AJ310521|SYNM|23336|synemin, intermediate filament protein##AJ310522|SYNM|23336|synemin, intermediate filament protein##AJ697971|SYNM|23336|synemin, intermediate filament protein##NM_015286|SYNM|23336|synemin, intermediate filament protein##NM_145728|SYNM|23336|synemin, intermediate filament protein##AF359284|SYNM|23336|synemin, intermediate filament protein	0.219499	
chr7	1177931	1178033	reg1000424.p1	7.274	+	TSC_hg19_v1_chr7_-_1177884 AF495721 BC006224 NM_001134395 NM_001134396 NM_032350	-120	-	NM_001098201 AK289588 U63917 BC067849	-50229	+	NM_001039966 NM_001505 AF015257	-51506	+	BC016963 TSC_hg19_v1_chr7_-_1199799 AK027118 BC029558	21816	-	AK290170 TSC_hg19_v1_chr7_-_1199815	21832	-	TSC_hg19_v1_chr7_-_1199853 NM_182491	21857	-	AF495721|C7orf50|84310|chromosome 7 open reading frame 50##BC006224|C7orf50|84310|chromosome 7 open reading frame 50##NM_001134395|C7orf50|84310|chromosome 7 open reading frame 50##NM_001134396|C7orf50|84310|chromosome 7 open reading frame 50##NM_032350|C7orf50|84310|chromosome 7 open reading frame 50##NM_001098201|GPER|2852|G protein-coupled estrogen receptor 1##AK289588|GPER|2852|G protein-coupled estrogen receptor 1##U63917|GPER|2852|G protein-coupled estrogen receptor 1##BC067849|GPER|2852|G protein-coupled estrogen receptor 1##NM_001039966|GPER|2852|G protein-coupled estrogen receptor 1##NM_001505|GPER|2852|G protein-coupled estrogen receptor 1##AF015257|GPER|2852|G protein-coupled estrogen receptor 1##BC016963|ZFAND2A|90637|zinc finger, AN1-type domain 2A##AK027118|ZFAND2A|90637|zinc finger, AN1-type domain 2A##BC029558|ZFAND2A|90637|zinc finger, AN1-type domain 2A##AK290170|ZFAND2A|90637|zinc finger, AN1-type domain 2A##NM_182491|ZFAND2A|90637|zinc finger, AN1-type domain 2A	0.833546	denovo_WM_21:-31:0.834
chr20	35807350	35807472	reg1000569.p1	7.273	+	TSC_hg19_v1_chr20_-_35724401 AK310870 NM_002895 NM_183404	-83004	-	AB384850 DQ890612 DQ893783 CU689312 TSC_hg19_v1_chr20_-_35724395 AK308096 BC032247 AK290380 L14812	-83046	-	TSC_hg19_v1_chr20_-_35580196 AK027811 NM_015474	-227196	-	TSC_hg19_v1_chr20_+_35807496 NM_001135771 NM_002951 Y00282	63	+	TSC_hg19_v1_chr20_+_35807523 AK096243 BC020222	159	+	TSC_hg19_v1_chr20_+_35807732 AK315801 BC003560	304	+	AK310870|RBL1|5933|retinoblastoma-like 1 (p107)##NM_002895|RBL1|5933|retinoblastoma-like 1 (p107)##NM_183404|RBL1|5933|retinoblastoma-like 1 (p107)##DQ890612|RBL1|5933|retinoblastoma-like 1 (p107)##DQ893783|RBL1|5933|retinoblastoma-like 1 (p107)##AK308096|RBL1|5933|retinoblastoma-like 1 (p107)##BC032247|RBL1|5933|retinoblastoma-like 1 (p107)##AK290380|RBL1|5933|retinoblastoma-like 1 (p107)##L14812|RBL1|5933|retinoblastoma-like 1 (p107)##AK027811|SAMHD1|25939|SAM domain and HD domain 1##NM_015474|SAMHD1|25939|SAM domain and HD domain 1##NM_001135771|RPN2|6185|ribophorin II##NM_002951|RPN2|6185|ribophorin II##Y00282|RPN2|6185|ribophorin II##AK096243|RPN2|6185|ribophorin II##BC020222|RPN2|6185|ribophorin II##AK315801|RPN2|6185|ribophorin II##BC003560|RPN2|6185|ribophorin II	0.985758	denovo_WM_21:-7:0.986
chr10	124913743	124913881	reg1000591.p1	7.271	+	NM_001007793 NM_004725 TSC_hg19_v1_chr10_+_124913846	-7	+	NM_005519	-6175	+	NM_001105574 TSC_hg19_v1_chr10_+_124895620	-18219	+	TSC_hg19_v1_chr10_+_124913883 BX647392	60	+	TSC_hg19_v1_chr10_+_124913906 AK312546 AK307958 AK293255	86	+	TSC_hg19_v1_chr10_+_124913926 AF081496 AF047472 AF047473 BC005138 BC022438 AF053304	134	+	NM_001007793|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##NM_004725|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##NM_005519|HMX2|3167|H6 family homeobox 2##NM_001105574|HMX3|340784|H6 family homeobox 3##BX647392|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##AK312546|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##AK307958|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##AK293255|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##AF081496|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##AF047472|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##AF047473|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##BC005138|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##BC022438|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##AF053304|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)	0.825088	denovo_WM_21:56:0.811
chr14	65007264	65007437	reg1000435.p2	7.248	+	TSC_hg19_v1_chr14_+_65007187 NM_021979	-116	+	TSC_hg19_v1_chr14_+_64971513 AK291743	-35827	+	TSC_hg19_v1_chr14_+_64971443 AB023214	-35907	+	TSC_hg19_v1_chr14_+_65007458 AK097824 BC036107 BC034365 AB527255 BT009815 CU674866 DQ892538 DQ895749	142	+	TSC_hg19_v1_chr14_+_65016678 AK058044 NM_172365 BC068989	9295	+	TSC_hg19_v1_chr14_+_65171178 BX248779 NM_015549	163822	+	NM_021979|HSPA2|3306|heat shock 70kDa protein 2##AK291743|ZBTB1|22890|zinc finger and BTB domain containing 1##AB023214|ZBTB1|22890|zinc finger and BTB domain containing 1##AK097824|HSPA2|3306|heat shock 70kDa protein 2##BC036107|HSPA2|3306|heat shock 70kDa protein 2##BC034365|HSPA2|3306|heat shock 70kDa protein 2##BT009815|HSPA2|3306|heat shock 70kDa protein 2##DQ892538|HSPA2|3306|heat shock 70kDa protein 2##DQ895749|HSPA2|3306|heat shock 70kDa protein 2##AK058044|PPP1R36|145376|protein phosphatase 1, regulatory subunit 36##NM_172365|PPP1R36|145376|protein phosphatase 1, regulatory subunit 36##BC068989|PPP1R36|145376|protein phosphatase 1, regulatory subunit 36##BX248779|PLEKHG3|26030|pleckstrin homology domain containing, family G (with RhoGef domain) member 3##NM_015549|PLEKHG3|26030|pleckstrin homology domain containing, family G (with RhoGef domain) member 3	0.0	
chr9	37465494	37465678	reg1000059.p1	7.241	+	TSC_hg19_v1_chr9_-_37465448 AK292404	-145	-	TSC_hg19_v1_chr9_-_37465398 AB002352 NM_014872	-191	-	BC010007 TSC_hg19_v1_chr9_-_37465267	-326	-	TSC_hg19_v1_chr9_+_37485944 BC014331 AK023452 AK302345 AK303167 NM_022490 AK301347 AK024032 AK225050 BC017766 BC001337 CR457313 AK091294 AX746899	20444	+	AF174598 AF176705 NM_012166 TSC_hg19_v1_chr9_-_37576280	110679	-	CR627326 AB435233 TSC_hg19_v1_chr9_-_37592574 BC034247	126933	-	AK292404|ZBTB5|9925|zinc finger and BTB domain containing 5##AB002352|ZBTB5|9925|zinc finger and BTB domain containing 5##NM_014872|ZBTB5|9925|zinc finger and BTB domain containing 5##BC010007|ZBTB5|9925|zinc finger and BTB domain containing 5##BC014331|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK023452|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK302345|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK303167|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##NM_022490|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK301347|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK024032|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK225050|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##BC017766|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##BC001337|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##CR457313|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK091294|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AF174598|FBXO10|26267|F-box protein 10##AF176705|FBXO10|26267|F-box protein 10##NM_012166|FBXO10|26267|F-box protein 10##AB435233|TOMM5|401505|translocase of outer mitochondrial membrane 5 homolog (yeast)##BC034247|TOMM5|401505|translocase of outer mitochondrial membrane 5 homolog (yeast)	0.959836	denovo_WM_21:-80:0.938
chr6	116892440	116892550	reg1000705.p1	7.234	+	NM_001139444	-25723	-	AK300309 AY358252 NM_153036 BC057769 AK056801	-42287	+	BC032556 NM_153711 AK094140 AK315572	-59674	+	AK290727 TSC_hg19_v1_chr6_+_116892562	50	+	TSC_hg19_v1_chr6_+_116892580 NM_001007464 NM_015952 NM_016104	107	+	TSC_hg19_v1_chr6_+_116892666 AK301089 BC012534 AF132958 BC015802	172	+	NM_001139444|BET3L|100128327|BET3 like (S. cerevisiae)##AK300309|FAM26D|221301|family with sequence similarity 26, member D##AY358252|FAM26D|221301|family with sequence similarity 26, member D##NM_153036|FAM26D|221301|family with sequence similarity 26, member D##BC057769|FAM26D|221301|family with sequence similarity 26, member D##AK056801|FAM26D|221301|family with sequence similarity 26, member D##BC032556|FAM26E|254228|family with sequence similarity 26, member E##NM_153711|FAM26E|254228|family with sequence similarity 26, member E##AK094140|FAM26E|254228|family with sequence similarity 26, member E##AK315572|FAM26E|254228|family with sequence similarity 26, member E##AK290727|RWDD1|51389|RWD domain containing 1##NM_001007464|RWDD1|51389|RWD domain containing 1##NM_015952|RWDD1|51389|RWD domain containing 1##NM_016104|RWDD1|51389|RWD domain containing 1##AK301089|RWDD1|51389|RWD domain containing 1##BC012534|RWDD1|51389|RWD domain containing 1##AF132958|RWDD1|51389|RWD domain containing 1##BC015802|RWDD1|51389|RWD domain containing 1	0.014539	
chr14	45603760	45603892	reg1000781.p1	7.225	+	TSC_hg19_v1_chr14_-_45603685 AK311915 BC020809 M90820 AK222993 M96256 NM_002013	-120	-	AB528407 BT006904 CU677595 DQ890734 DQ891132 DQ893906 DQ894311 TSC_hg19_v1_chr14_-_45603667	-164	-	TSC_hg19_v1_chr14_+_45553323 NM_017922 AK308415 BC028683 AK307530 AK000673 BC125126 BC125127	-50517	+	TSC_hg19_v1_chr14_+_45605134 NM_020937 BC036056	1299	+	AK093422 AX748116 TSC_hg19_v1_chr14_+_45605142	1316	+	TSC_hg19_v1_chr14_+_45605166 DQ140356 BC140776 BC144511 CU690276	1363	+	AK311915|FKBP3|2287|FK506 binding protein 3, 25kDa##BC020809|FKBP3|2287|FK506 binding protein 3, 25kDa##AK222993|FKBP3|2287|FK506 binding protein 3, 25kDa##M96256|FKBP3|2287|FK506 binding protein 3, 25kDa##NM_002013|FKBP3|2287|FK506 binding protein 3, 25kDa##BT006904|FKBP3|2287|FK506 binding protein 3, 25kDa##DQ890734|FKBP3|2287|FK506 binding protein 3, 25kDa##DQ891132|FKBP3|2287|FK506 binding protein 3, 25kDa##DQ893906|FKBP3|2287|FK506 binding protein 3, 25kDa##DQ894311|FKBP3|2287|FK506 binding protein 3, 25kDa##NM_017922|PRPF39|55015|PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)##AK308415|PRPF39|55015|PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)##BC028683|PRPF39|55015|PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)##AK307530|PRPF39|55015|PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)##AK000673|PRPF39|55015|PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)##BC125126|PRPF39|55015|PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)##BC125127|PRPF39|55015|PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)##NM_020937|FANCM|57697|Fanconi anemia, complementation group M##BC036056|FANCM|57697|Fanconi anemia, complementation group M##AK093422|FANCM|57697|Fanconi anemia, complementation group M##DQ140356|FANCM|57697|Fanconi anemia, complementation group M##BC140776|FANCM|57697|Fanconi anemia, complementation group M##BC144511|FANCM|57697|Fanconi anemia, complementation group M	0.0	
chrX	1780274	1780458	reg1000200.p1	7.223	+	AK314922 NM_001171038 U11091 M83779 NM_001171039 BC001620	-46363	+	NM_004043 U11090	-66019	+	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	-69837	+	BC015030 NM_001171135	638213	-	BC019696 CU689342 DQ891613 DQ894805 AJ293620 AY358849 BC032340 AB018328 NM_001171136 NM_004729 NM_145177	638622	-	M16279 BC010109 NM_001122898 NM_002414 BC024310 X16996 BC002584 AK313617 BC003147 BC021620 AK309517 DQ891912 AB463475 CR450286 U82164	828946	+	AK314922|ASMT|438|acetylserotonin O-methyltransferase##NM_001171038|ASMT|438|acetylserotonin O-methyltransferase##U11091|ASMT|438|acetylserotonin O-methyltransferase##M83779|ASMT|438|acetylserotonin O-methyltransferase##NM_001171039|ASMT|438|acetylserotonin O-methyltransferase##BC001620|ASMT|438|acetylserotonin O-methyltransferase##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015030|ZBED1|9189|zinc finger, BED-type containing 1##NM_001171135|ZBED1|9189|zinc finger, BED-type containing 1##BC019696|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##DQ891613|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##DQ894805|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AJ293620|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AY358849|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##BC032340|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AB018328|ZBED1|9189|zinc finger, BED-type containing 1##NM_001171136|ZBED1|9189|zinc finger, BED-type containing 1##NM_004729|ZBED1|9189|zinc finger, BED-type containing 1##NM_145177|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##M16279|CD99|4267|CD99 molecule##BC010109|CD99|4267|CD99 molecule##NM_001122898|CD99|4267|CD99 molecule##NM_002414|CD99|4267|CD99 molecule##BC024310|CD99|4267|CD99 molecule##X16996|CD99|4267|CD99 molecule##BC002584|CD99|4267|CD99 molecule##AK313617|CD99|4267|CD99 molecule##BC003147|CD99|4267|CD99 molecule##BC021620|CD99|4267|CD99 molecule##DQ891912|CD99|4267|CD99 molecule##CR450286|CD99|4267|CD99 molecule##U82164|CD99|4267|CD99 molecule	1.561206	denovo_WM_21:33:0.781	denovo_WM_21:-79:0.781
chr8	144679341	144679459	reg1000606.p1	7.222	+	TSC_hg19_v1_chr8_-_144660503 AB242230 AY214325 AY214326 AY214327 AK097002 NM_145201	-18890	-	CU675331 CU680822 TSC_hg19_v1_chr8_-_144660501 BC006284 BC014190	-18942	-	TSC_hg19_v1_chr8_-_144654943 NM_001100878	-24467	-	AF370363 BC071840 BC094806 TSC_hg19_v1_chr8_-_144679584 NM_001130057 BC062535 BC007847 BC009907 BC012819 Z21507 AK314311 AK225243 AK024550 AK225040 AK225270 AK293339	169	-	NM_001130053 NM_001130055 NM_001130056 NM_001195203 NM_001960 NM_032378	444	-	NM_032862 TSC_hg19_v1_chr8_+_144680073 AK223583	673	+	AB242230|NAPRT1|93100|nicotinate phosphoribosyltransferase domain containing 1##AY214325|NAPRT1|93100|nicotinate phosphoribosyltransferase domain containing 1##AY214326|NAPRT1|93100|nicotinate phosphoribosyltransferase domain containing 1##AY214327|NAPRT1|93100|nicotinate phosphoribosyltransferase domain containing 1##AK097002|NAPRT1|93100|nicotinate phosphoribosyltransferase domain containing 1##NM_145201|NAPRT1|93100|nicotinate phosphoribosyltransferase domain containing 1##BC006284|NAPRT1|93100|nicotinate phosphoribosyltransferase domain containing 1##BC014190|NAPRT1|93100|nicotinate phosphoribosyltransferase domain containing 1##NM_001100878|C8orf73|642475|chromosome 8 open reading frame 73##AF370363|EEF1D|1936|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)##BC071840|EEF1D|1936|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)##BC094806|EEF1D|1936|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)##NM_001130057|EEF1D|1936|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)##BC062535|EEF1D|1936|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)##BC007847|EEF1D|1936|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)##BC009907|EEF1D|1936|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)##BC012819|EEF1D|1936|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)##Z21507|EEF1D|1936|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)##AK314311|EEF1D|1936|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)##AK225243|EEF1D|1936|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)##AK024550|EEF1D|1936|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)##AK225040|EEF1D|1936|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)##AK225270|EEF1D|1936|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)##AK293339|EEF1D|1936|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)##NM_001130053|EEF1D|1936|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)##NM_001130055|EEF1D|1936|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)##NM_001130056|EEF1D|1936|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)##NM_001195203|EEF1D|1936|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)##NM_001960|EEF1D|1936|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)##NM_032378|EEF1D|1936|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)##NM_032862|TIGD5|84948|tigger transposable element derived 5##AK223583|TIGD5|84948|tigger transposable element derived 5	0.0	
chr2	136288773	136288937	reg1000368.p1	7.221	+	AK095362 BC089429 NM_032143	-69	-	NM_001172435 NM_012233 TSC_hg19_v1_chr2_+_135809861 AK022494 BC146809 BC071602 D31886 AB385272 AB449877 BC030992	-478939	+	BC137276 BC137277 BC144555 AY574901 AY574902 AY574903 AY574904 AY574905 NM_001018046 NM_025052	-506609	-	TSC_hg19_v1_chr2_+_136289050 BC001217 D21852 BC041093 NM_015361	205	+	TSC_hg19_v1_chr2_+_136499328 NM_014607 AK311058	210382	+	TSC_hg19_v1_chr2_+_136499437 BC035594 EF199840 BX647662 AK304096 D87684 BC020806	210542	+	AK095362|ZRANB3|84083|zinc finger, RAN-binding domain containing 3##BC089429|ZRANB3|84083|zinc finger, RAN-binding domain containing 3##NM_032143|ZRANB3|84083|zinc finger, RAN-binding domain containing 3##NM_001172435|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##NM_012233|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##AK022494|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##BC146809|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##BC071602|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##D31886|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##AB449877|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##BC030992|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##BC137276|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##BC137277|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##BC144555|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##AY574901|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##AY574902|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##AY574903|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##AY574904|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##AY574905|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##NM_001018046|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##NM_025052|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##BC001217|R3HDM1|23518|R3H domain containing 1##D21852|R3HDM1|23518|R3H domain containing 1##BC041093|R3HDM1|23518|R3H domain containing 1##NM_015361|R3HDM1|23518|R3H domain containing 1##NM_014607|UBXN4|23190|UBX domain protein 4##AK311058|UBXN4|23190|UBX domain protein 4##BC035594|UBXN4|23190|UBX domain protein 4##EF199840|UBXN4|23190|UBX domain protein 4##BX647662|UBXN4|23190|UBX domain protein 4##AK304096|UBXN4|23190|UBX domain protein 4##D87684|UBXN4|23190|UBX domain protein 4##BC020806|UBXN4|23190|UBX domain protein 4	0.315979	denovo_WM_21:-51:0.254
chr16	57769492	57769650	reg1000083.p2	7.220	+	TSC_hg19_v1_chr16_+_57728717 NM_032269 AK292558 BC030661 BC036667 AK093035 AX747872	-40842	+	AK172801 NM_170776 BC064508 AB049169 AK310124 AK301258 BC044222 AY140959	-67364	+	NM_001145774 AK297236 AK311156 TSC_hg19_v1_chr16_+_57673403 BC013207	-96254	+	TSC_hg19_v1_chr16_+_57769662 NM_005886	74	+	TSC_hg19_v1_chr16_+_57769741 AB209250	153	+	BC041132 AK299431 AK291737 NM_001130099	62230	-	NM_032269|CCDC135|84229|coiled-coil domain containing 135##AK292558|CCDC135|84229|coiled-coil domain containing 135##BC030661|CCDC135|84229|coiled-coil domain containing 135##BC036667|CCDC135|84229|coiled-coil domain containing 135##AK093035|CCDC135|84229|coiled-coil domain containing 135##AK172801|GPR97|222487|G protein-coupled receptor 97##NM_170776|GPR97|222487|G protein-coupled receptor 97##BC064508|GPR97|222487|G protein-coupled receptor 97##AB049169|GPR97|222487|G protein-coupled receptor 97##AK310124|GPR97|222487|G protein-coupled receptor 97##AK301258|GPR97|222487|G protein-coupled receptor 97##BC044222|GPR97|222487|G protein-coupled receptor 97##AY140959|GPR97|222487|G protein-coupled receptor 97##NM_001145774|GPR56|9289|G protein-coupled receptor 56##AK297236|GPR56|9289|G protein-coupled receptor 56##AK311156|GPR56|9289|G protein-coupled receptor 56##BC013207|GPR56|9289|G protein-coupled receptor 56##NM_005886|KATNB1|10300|katanin p80 (WD repeat containing) subunit B 1##AB209250|KATNB1|10300|katanin p80 (WD repeat containing) subunit B 1##BC041132|KIFC3|3801|kinesin family member C3##AK299431|KIFC3|3801|kinesin family member C3##AK291737|KIFC3|3801|kinesin family member C3##NM_001130099|KIFC3|3801|kinesin family member C3	0.80536	denovo_WM_21:4:0.660
chrY	1730274	1730458	reg1000201.p1	7.220	+	AK314922 NM_001171038 U11091 M83779 NM_001171039 BC001620	-46363	+	NM_004043 U11090	-66019	+	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	-69837	+	BC015030 NM_001171135	638213	-	BC019696 CU689342 DQ891613 DQ894805 AJ293620 AY358849 BC032340 AB018328 NM_001171136 NM_004729 NM_145177	638622	-	M16279 BC010109 NM_001122898 NM_002414 BC024310 X16996 BC002584 AK313617 BC003147 BC021620 AK309517 DQ891912 AB463475 CR450286 U82164	828946	+	AK314922|ASMT|438|acetylserotonin O-methyltransferase##NM_001171038|ASMT|438|acetylserotonin O-methyltransferase##U11091|ASMT|438|acetylserotonin O-methyltransferase##M83779|ASMT|438|acetylserotonin O-methyltransferase##NM_001171039|ASMT|438|acetylserotonin O-methyltransferase##BC001620|ASMT|438|acetylserotonin O-methyltransferase##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015030|ZBED1|9189|zinc finger, BED-type containing 1##NM_001171135|ZBED1|9189|zinc finger, BED-type containing 1##BC019696|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##DQ891613|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##DQ894805|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AJ293620|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AY358849|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##BC032340|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AB018328|ZBED1|9189|zinc finger, BED-type containing 1##NM_001171136|ZBED1|9189|zinc finger, BED-type containing 1##NM_004729|ZBED1|9189|zinc finger, BED-type containing 1##NM_145177|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##M16279|CD99|4267|CD99 molecule##BC010109|CD99|4267|CD99 molecule##NM_001122898|CD99|4267|CD99 molecule##NM_002414|CD99|4267|CD99 molecule##BC024310|CD99|4267|CD99 molecule##X16996|CD99|4267|CD99 molecule##BC002584|CD99|4267|CD99 molecule##AK313617|CD99|4267|CD99 molecule##BC003147|CD99|4267|CD99 molecule##BC021620|CD99|4267|CD99 molecule##DQ891912|CD99|4267|CD99 molecule##CR450286|CD99|4267|CD99 molecule##U82164|CD99|4267|CD99 molecule	1.561206	denovo_WM_21:34:0.781	denovo_WM_21:-78:0.781
chr9	131940585	131940681	reg1000444.p1	7.219	+	TSC_hg19_v1_chr9_-_131940541 NM_203434	-93	-	TSC_hg19_v1_chr9_-_131940534 BC064028	-126	-	AK310328 TSC_hg19_v1_chr9_+_131902359	-38323	+	AK092588 AX747616 NM_001012715 BC132699 BC132701	142662	+	TSC_hg19_v1_chr9_+_132251360 BC044229 AK024177	310721	+	TSC_hg19_v1_chr9_+_132251404 BC019073 AK092686	310808	+	NM_203434|IER5L|389792|immediate early response 5-like##BC064028|IER5L|389792|immediate early response 5-like##AK310328|PPP2R4|5524|protein phosphatase 2A activator, regulatory subunit 4##AK092588|C9orf106|414318|chromosome 9 open reading frame 106##NM_001012715|C9orf106|414318|chromosome 9 open reading frame 106##BC132699|C9orf106|414318|chromosome 9 open reading frame 106##BC132701|C9orf106|414318|chromosome 9 open reading frame 106##BC044229|LOC100506190|100506190|uncharacterized LOC100506190##AK024177|LOC100506190|100506190|uncharacterized LOC100506190##BC019073|LOC100506190|100506190|uncharacterized LOC100506190##AK092686|LOC100506190|100506190|uncharacterized LOC100506190	1.208701	denovo_WM_21:-25:0.970	denovo_WM_21:38:0.238
chr7	72476415	72476577	reg1000642.p1	7.215	+	BC050591 BC066297 BC056405 BC007488 TSC_hg19_v1_chr7_-_72425263 BC082753 AF416611 AF420250 AK021688 AL833016 AK292107 AK126486	-51254	-	AK292548 TSC_hg19_v1_chr7_+_72396883 AB528161 CU679111	-79622	+	TSC_hg19_v1_chr7_+_72395623 AK123814 AB289621	-80871	+	BC045632 TSC_hg19_v1_chr7_+_72569035 AK299175	92535	+	TSC_hg19_v1_chr7_-_72722806 AB590182 CU675927 DQ892994 DQ896242 AF420249 AK126375 AF412028 AK001129 BC008084 AK315361 AK125667 AK298221 AK098619 NM_001168347 NM_001168348 NM_018044 NM_148956	246328	-	AK057366 AY081948 AY081949 NM_178125	265588	-	BC050591|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC066297|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC056405|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC007488|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC082753|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AF416611|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AF420250|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AK021688|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AL833016|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AK292107|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AK126486|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1##AK292548|POM121|9883|POM121 membrane glycoprotein##AK123814|POM121|9883|POM121 membrane glycoprotein##AB289621|POM121|9883|POM121 membrane glycoprotein##BC045632|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##AK299175|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##DQ892994|NSUN5|55695|NOP2/Sun domain family, member 5##DQ896242|NSUN5|55695|NOP2/Sun domain family, member 5##AF420249|NSUN5|55695|NOP2/Sun domain family, member 5##AK126375|NSUN5|55695|NOP2/Sun domain family, member 5##AF412028|NSUN5|55695|NOP2/Sun domain family, member 5##AK001129|NSUN5|55695|NOP2/Sun domain family, member 5##BC008084|NSUN5|55695|NOP2/Sun domain family, member 5##AK315361|NSUN5|55695|NOP2/Sun domain family, member 5##AK125667|NSUN5|55695|NOP2/Sun domain family, member 5##AK298221|NSUN5|55695|NOP2/Sun domain family, member 5##AK098619|NSUN5|55695|NOP2/Sun domain family, member 5##NM_001168347|NSUN5|55695|NOP2/Sun domain family, member 5##NM_001168348|NSUN5|55695|NOP2/Sun domain family, member 5##NM_018044|NSUN5|55695|NOP2/Sun domain family, member 5##NM_148956|NSUN5|55695|NOP2/Sun domain family, member 5##AK057366|TRIM50|135892|tripartite motif containing 50##AY081948|TRIM50|135892|tripartite motif containing 50##AY081949|TRIM50|135892|tripartite motif containing 50##NM_178125|TRIM50|135892|tripartite motif containing 50	1.96408	denovo_WM_21:-26:0.981	denovo_WM_21:98:0.972
chr19	16770944	16771057	reg1000688.p1	7.211	+	TSC_hg19_v1_chr19_-_16770956 NM_024104	-38	-	TSC_hg19_v1_chr19_-_16770944 AK025602 BC069279 BX648276	-71	-	AK313778 BC110430 TSC_hg19_v1_chr19_-_16739013 BC068564 NM_004831	-32000	-	TSC_hg19_v1_chr19_+_16771949 AK025981 NM_024074 AK292764 BC001195	966	+	BX648940 NM_001007525 CR749794	59788	+	TSC_hg19_v1_chr19_+_16940221 NM_015260 AB014600 AY706204 BC063531 BC110821 AB463259 BC025026	169202	+	NM_024104|C19orf42|79086|chromosome 19 open reading frame 42##AK025602|C19orf42|79086|chromosome 19 open reading frame 42##BC069279|C19orf42|79086|chromosome 19 open reading frame 42##BX648276|C19orf42|79086|chromosome 19 open reading frame 42##AK313778|MED26|9441|mediator complex subunit 26##BC110430|MED26|9441|mediator complex subunit 26##NM_004831|MED26|9441|mediator complex subunit 26##AK025981|TMEM38A|79041|transmembrane protein 38A##NM_024074|TMEM38A|79041|transmembrane protein 38A##AK292764|TMEM38A|79041|transmembrane protein 38A##BC001195|TMEM38A|79041|transmembrane protein 38A##BX648940|NWD1|284434|NACHT and WD repeat domain containing 1##NM_001007525|NWD1|284434|NACHT and WD repeat domain containing 1##CR749794|NWD1|284434|NACHT and WD repeat domain containing 1##NM_015260|SIN3B|23309|SIN3 transcription regulator homolog B (yeast)##AB014600|SIN3B|23309|SIN3 transcription regulator homolog B (yeast)##AY706204|SIN3B|23309|SIN3 transcription regulator homolog B (yeast)##BC063531|SIN3B|23309|SIN3 transcription regulator homolog B (yeast)##BC110821|SIN3B|23309|SIN3 transcription regulator homolog B (yeast)##BC025026|SIN3B|23309|SIN3 transcription regulator homolog B (yeast)	0.868702	denovo_WM_21:30:0.857
chr16	3451053	3451185	reg1000559.p1	7.205	+	BC002859 TSC_hg19_v1_chr16_-_3450980 AK301586 AK056463 AK291213 AK299070 AK303338 AY261676 NM_017810	-126	-	NM_001190476	-28837	-	BC126269 BC130328 NM_012368 BC069158 BC069456 CU686822 HQ258169	-45205	+	TSC_hg19_v1_chr16_+_3451250 NM_001032292 NM_003450 BC001161 BC000876 U31248	167	+	BC029899 NM_152457 AK057633	42375	-	TSC_hg19_v1_chr16_+_3493690 NM_001083601 AK297219 AL833594	42563	+	BC002859|ZNF434|54925|zinc finger protein 434##AK301586|ZNF434|54925|zinc finger protein 434##AK056463|ZNF434|54925|zinc finger protein 434##AK291213|ZNF434|54925|zinc finger protein 434##AK299070|ZNF434|54925|zinc finger protein 434##AY261676|ZNF434|54925|zinc finger protein 434##NM_017810|ZNF434|54925|zinc finger protein 434##NM_001190476|MTRNR2L4|100463285|MT-RNR2-like 4##BC126269|OR2C1|4993|olfactory receptor, family 2, subfamily C, member 1##BC130328|OR2C1|4993|olfactory receptor, family 2, subfamily C, member 1##NM_012368|OR2C1|4993|olfactory receptor, family 2, subfamily C, member 1##BC069158|OR2C1|4993|olfactory receptor, family 2, subfamily C, member 1##BC069456|OR2C1|4993|olfactory receptor, family 2, subfamily C, member 1##HQ258169|OR2C1|4993|olfactory receptor, family 2, subfamily C, member 1##NM_001032292|ZNF174|7727|zinc finger protein 174##NM_003450|ZNF174|7727|zinc finger protein 174##BC001161|ZNF174|7727|zinc finger protein 174##BC000876|ZNF174|7727|zinc finger protein 174##U31248|ZNF174|7727|zinc finger protein 174##BC029899|ZNF597|146434|zinc finger protein 597##NM_152457|ZNF597|146434|zinc finger protein 597##AK057633|ZNF597|146434|zinc finger protein 597##NM_001083601|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit##AK297219|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit##AL833594|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit	0.385523	denovo_WM_21:-5:0.386
chr12	56617989	56618117	reg1000545.p2	7.202	+	TSC_hg19_v1_chr12_-_56615718 BC024284 AK300752 NM_005785 NM_194358 AK314811 AK304576 NM_194359	-2328	-	NM_001242826 BC011626 BC095418 TSC_hg19_v1_chr12_-_56615651 BC036267	-2481	-	TSC_hg19_v1_chr12_-_56583357 AB209006 NM_001130420 NM_003075 NM_139067	-34706	-	TSC_hg19_v1_chr12_+_56618125 NM_024068	70	+	BC006171 TSC_hg19_v1_chr12_+_56618157 AY203942	156	+	NM_173596 TSC_hg19_v1_chr12_+_56623836 AK298331 AK313188	5784	+	BC024284|RNF41|10193|ring finger protein 41##AK300752|RNF41|10193|ring finger protein 41##NM_005785|RNF41|10193|ring finger protein 41##NM_194358|RNF41|10193|ring finger protein 41##AK314811|RNF41|10193|ring finger protein 41##AK304576|RNF41|10193|ring finger protein 41##NM_194359|RNF41|10193|ring finger protein 41##NM_001242826|RNF41|10193|ring finger protein 41##BC011626|RNF41|10193|ring finger protein 41##BC095418|RNF41|10193|ring finger protein 41##BC036267|RNF41|10193|ring finger protein 41##AB209006|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##NM_001130420|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##NM_003075|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##NM_139067|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##NM_024068|OBFC2B|79035|oligonucleotide/oligosaccharide-binding fold containing 2B##BC006171|OBFC2B|79035|oligonucleotide/oligosaccharide-binding fold containing 2B##AY203942|OBFC2B|79035|oligonucleotide/oligosaccharide-binding fold containing 2B##NM_173596|SLC39A5|283375|solute carrier family 39 (metal ion transporter), member 5##AK298331|SLC39A5|283375|solute carrier family 39 (metal ion transporter), member 5##AK313188|SLC39A5|283375|solute carrier family 39 (metal ion transporter), member 5	1.797684	denovo_WM_21:-21:0.875	denovo_WM_21:30:0.923
chr3	113415687	113415872	reg1000330.p2	7.189	+	TSC_hg19_v1_chr3_-_113415490 BC043383 NM_001009899	-367	-	NM_017699	-164562	+	AY099107 BC036951 TSC_hg19_v1_chr3_-_113234023 AK057966 AL832327 AL832148 NM_144718	-181786	-	AK296456 TSC_hg19_v1_chr3_-_113464788	48935	-	TSC_hg19_v1_chr3_-_113465043 CR749314 AK023090 AK307184 BC012731 AK311403 AK023256	49264	-	TSC_hg19_v1_chr3_-_113465109 NM_025146	49354	-	BC043383|KIAA2018|205717|KIAA2018##NM_001009899|KIAA2018|205717|KIAA2018##NM_017699|SIDT1|54847|SID1 transmembrane family, member 1##AY099107|SPICE1|152185|spindle and centriole associated protein 1##BC036951|SPICE1|152185|spindle and centriole associated protein 1##AK057966|SPICE1|152185|spindle and centriole associated protein 1##AL832327|SPICE1|152185|spindle and centriole associated protein 1##AL832148|SPICE1|152185|spindle and centriole associated protein 1##NM_144718|SPICE1|152185|spindle and centriole associated protein 1##AK296456|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##CR749314|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##AK023090|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##AK307184|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##BC012731|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##AK023256|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##NM_025146|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit	0.015972	
chr4	184580333	184580455	reg1000572.p1	7.186	+	CU688324 BC107432 TSC_hg19_v1_chr4_-_184580305 AK021702 AK293274 AK315515 BC017472 BC067752 NM_152682	-152	-	TSC_hg19_v1_chr4_+_184427252 AK294310 AB196793	-153103	+	TSC_hg19_v1_chr4_+_184426172 AK314000 NM_001564 BC030128 AB012853 AF053537 AB464592 AJ006851 CU688818	-154147	+	NM_021942 NM_199053 TSC_hg19_v1_chr4_+_184580445 AL833571 AK096345 BX648499 BX647127 BX538044 BC040530 BC051724	55	+	TSC_hg19_v1_chr4_+_184580539 BC139745	117	+	TSC_hg19_v1_chr4_+_184826513 AB037813 BC146754 NM_020225	246112	+	BC107432|RWDD4|201965|RWD domain containing 4##AK021702|RWDD4|201965|RWD domain containing 4##AK293274|RWDD4|201965|RWD domain containing 4##AK315515|RWDD4|201965|RWD domain containing 4##BC017472|RWDD4|201965|RWD domain containing 4##BC067752|RWDD4|201965|RWD domain containing 4##NM_152682|RWDD4|201965|RWD domain containing 4##AK294310|ING2|3622|inhibitor of growth family, member 2##AB196793|ING2|3622|inhibitor of growth family, member 2##AK314000|ING2|3622|inhibitor of growth family, member 2##NM_001564|ING2|3622|inhibitor of growth family, member 2##BC030128|ING2|3622|inhibitor of growth family, member 2##AB012853|ING2|3622|inhibitor of growth family, member 2##AF053537|ING2|3622|inhibitor of growth family, member 2##AJ006851|ING2|3622|inhibitor of growth family, member 2##NM_021942|C4orf41|60684|chromosome 4 open reading frame 41##NM_199053|C4orf41|60684|chromosome 4 open reading frame 41##AL833571|C4orf41|60684|chromosome 4 open reading frame 41##AK096345|C4orf41|60684|chromosome 4 open reading frame 41##BX648499|C4orf41|60684|chromosome 4 open reading frame 41##BX647127|C4orf41|60684|chromosome 4 open reading frame 41##BX538044|C4orf41|60684|chromosome 4 open reading frame 41##BC040530|C4orf41|60684|chromosome 4 open reading frame 41##BC051724|C4orf41|60684|chromosome 4 open reading frame 41##BC139745|C4orf41|60684|chromosome 4 open reading frame 41##AB037813|STOX2|56977|storkhead box 2##BC146754|STOX2|56977|storkhead box 2##NM_020225|STOX2|56977|storkhead box 2	0.0	
chr19	12847744	12847929	reg1000290.p1	7.184	+	TSC_hg19_v1_chr19_-_12845557 BC040846	-2288	-	TSC_hg19_v1_chr19_-_12845516 BC000216 NM_024038 BC001840	-2314	-	TSC_hg19_v1_chr19_-_12845497 BC015347 AK315754 AK027588	-2348	-	TSC_hg19_v1_chr19_+_12848310 NM_004317 AK223363 AK291855 AK293588 AF047469 BC002651 CU678092 U60276	488	+	AF440756 AY515705 NM_017682 AK000139 AK225232	15602	+	CU680326 DQ891339 DQ893360 DQ894521 DQ896679 AB527820 TSC_hg19_v1_chr19_-_12886342 AF044924 BC012443	38491	-	BC040846|C19orf43|79002|chromosome 19 open reading frame 43##BC000216|C19orf43|79002|chromosome 19 open reading frame 43##NM_024038|C19orf43|79002|chromosome 19 open reading frame 43##BC015347|C19orf43|79002|chromosome 19 open reading frame 43##AK315754|C19orf43|79002|chromosome 19 open reading frame 43##AK027588|C19orf43|79002|chromosome 19 open reading frame 43##NM_004317|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##AK223363|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##AK291855|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##AK293588|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##AF047469|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##BC002651|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##U60276|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##AF440756|BEST2|54831|bestrophin 2##AY515705|BEST2|54831|bestrophin 2##NM_017682|BEST2|54831|bestrophin 2##AK000139|BEST2|54831|bestrophin 2##AK225232|BEST2|54831|bestrophin 2##DQ891339|HOOK2|29911|hook homolog 2 (Drosophila)##DQ893360|HOOK2|29911|hook homolog 2 (Drosophila)##DQ894521|HOOK2|29911|hook homolog 2 (Drosophila)##DQ896679|HOOK2|29911|hook homolog 2 (Drosophila)##AF044924|HOOK2|29911|hook homolog 2 (Drosophila)##BC012443|HOOK2|29911|hook homolog 2 (Drosophila)	0.652614	denovo_WM_21:-64:0.653
chr7	915968	916111	reg1000549.p1	7.184	+	BC142707 NM_001130965 AB463335 CU680640	-43891	+	NM_001171944 NM_001171945 NM_025154 TSC_hg19_v1_chr7_+_856279 AK022816 AK302896 AK309120 AK022469 BX538211 BC151827 AB018353 BC152418	-59757	+	BC013613 NM_001171946	-60846	+	TSC_hg19_v1_chr7_+_916188 NM_015949	164	+	TSC_hg19_v1_chr7_+_916249 BC003550 AK023560 AF132954	231	+	AK300644 AK300859 TSC_hg19_v1_chr7_-_960513	44475	-	BC142707|SUN1|23353|Sad1 and UNC84 domain containing 1##NM_001130965|SUN1|23353|Sad1 and UNC84 domain containing 1##NM_001171944|SUN1|23353|Sad1 and UNC84 domain containing 1##NM_001171945|SUN1|23353|Sad1 and UNC84 domain containing 1##NM_025154|SUN1|23353|Sad1 and UNC84 domain containing 1##AK022816|SUN1|23353|Sad1 and UNC84 domain containing 1##AK302896|SUN1|23353|Sad1 and UNC84 domain containing 1##AK309120|SUN1|23353|Sad1 and UNC84 domain containing 1##AK022469|SUN1|23353|Sad1 and UNC84 domain containing 1##BX538211|SUN1|23353|Sad1 and UNC84 domain containing 1##BC151827|SUN1|23353|Sad1 and UNC84 domain containing 1##AB018353|SUN1|23353|Sad1 and UNC84 domain containing 1##BC152418|SUN1|23353|Sad1 and UNC84 domain containing 1##BC013613|SUN1|23353|Sad1 and UNC84 domain containing 1##NM_001171946|SUN1|23353|Sad1 and UNC84 domain containing 1##NM_015949|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##BC003550|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##AK023560|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##AF132954|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##AK300644|ADAP1|11033|ArfGAP with dual PH domains 1##AK300859|ADAP1|11033|ArfGAP with dual PH domains 1	0.0	
chr2	86946953	86947103	reg1000633.p1	7.167	+	TSC_hg19_v1_chr2_-_86850960 NM_001198951 NM_001198952 NM_005667	-96045	-	D76444 TSC_hg19_v1_chr2_-_86850957 BC035053	-96082	-	TSC_hg19_v1_chr2_-_86790564 AK312353 AK315835 NM_001005753 NM_001193517 NM_016079	-156452	-	TSC_hg19_v1_chr2_+_86947421 AK023972 NM_022780	376	+	TSC_hg19_v1_chr2_+_86947435 AK022815 BC047668	457	+	TSC_hg19_v1_chr2_+_86947570 BC012165 CU680248 CU690448 AB528949 EU831470 EU831557	651	+	NM_001198951|RNF103|7844|ring finger protein 103##NM_001198952|RNF103|7844|ring finger protein 103##NM_005667|RNF103|7844|ring finger protein 103##D76444|RNF103|7844|ring finger protein 103##BC035053|RNF103|7844|ring finger protein 103##AK312353|CHMP3|51652|charged multivesicular body protein 3##AK315835|CHMP3|51652|charged multivesicular body protein 3##NM_001005753|CHMP3|51652|charged multivesicular body protein 3##NM_001193517|CHMP3|51652|charged multivesicular body protein 3##NM_016079|CHMP3|51652|charged multivesicular body protein 3##NM_022780|RMND5A|64795|required for meiotic nuclear division 5 homolog A (S. cerevisiae)##AK022815|RMND5A|64795|required for meiotic nuclear division 5 homolog A (S. cerevisiae)##BC047668|RMND5A|64795|required for meiotic nuclear division 5 homolog A (S. cerevisiae)##BC012165|RMND5A|64795|required for meiotic nuclear division 5 homolog A (S. cerevisiae)##EU831470|RMND5A|64795|required for meiotic nuclear division 5 homolog A (S. cerevisiae)##EU831557|RMND5A|64795|required for meiotic nuclear division 5 homolog A (S. cerevisiae)	1.02236	denovo_WM_21:0:0.218	denovo_WM_21:56:0.792
chr7	38217659	38217802	reg1000689.p2	7.162	+	NM_001242948 AK309180	-256803	+	BC000686 AK290885 TSC_hg19_v1_chr7_+_37960509 DQ914439 AJ250475	-257177	+	AY027862 NM_001242946 NM_017549 TSC_hg19_v1_chr7_+_37960259 BC018299	-257507	+	NM_032016 AK315404 TSC_hg19_v1_chr7_+_38217846	98	+	TSC_hg19_v1_chr7_+_38217932 AK091579 AX747072 AJ492267 AY358645 BC005959	228	+	BC062761 BC105589 AF151103 NM_001003799 NM_001003806	95509	-	NM_001242948|EPDR1|54749|ependymin related protein 1 (zebrafish)##AK309180|EPDR1|54749|ependymin related protein 1 (zebrafish)##BC000686|EPDR1|54749|ependymin related protein 1 (zebrafish)##AK290885|EPDR1|54749|ependymin related protein 1 (zebrafish)##DQ914439|EPDR1|54749|ependymin related protein 1 (zebrafish)##AJ250475|EPDR1|54749|ependymin related protein 1 (zebrafish)##AY027862|EPDR1|54749|ependymin related protein 1 (zebrafish)##NM_001242946|EPDR1|54749|ependymin related protein 1 (zebrafish)##NM_017549|EPDR1|54749|ependymin related protein 1 (zebrafish)##BC018299|EPDR1|54749|ependymin related protein 1 (zebrafish)##NM_032016|STARD3NL|83930|STARD3 N-terminal like##AK315404|STARD3NL|83930|STARD3 N-terminal like##AK091579|STARD3NL|83930|STARD3 N-terminal like##AJ492267|STARD3NL|83930|STARD3 N-terminal like##AY358645|STARD3NL|83930|STARD3 N-terminal like##BC005959|STARD3NL|83930|STARD3 N-terminal like##BC062761|TRGV9|6983|T cell receptor gamma variable 9##BC105589|TARP|445347|TCR gamma alternate reading frame protein##AF151103|TARP|445347|TCR gamma alternate reading frame protein##NM_001003799|TARP|445347|TCR gamma alternate reading frame protein##NM_001003806|TARP|445347|TCR gamma alternate reading frame protein	0.056621	
chr9	130159235	130159388	reg1000180.p2	7.160	+	NM_032293 AK293732 AK095679	-132504	+	TSC_hg19_v1_chr9_-_129885015 NM_012098 AY358274	-274281	-	TSC_hg19_v1_chr9_-_129884962 AK312876	-274349	-	TSC_hg19_v1_chr9_+_130159479 BC019043 NM_014580 Y17801 AJ245937 DQ892909 DQ896160 AF289587	135	+	TSC_hg19_v1_chr9_-_130186602 AK124330	27255	-	NM_007135 TSC_hg19_v1_chr9_+_130186700 AK054606 BC062309 AK302284	27370	+	NM_032293|GARNL3|84253|GTPase activating Rap/RanGAP domain-like 3##AK293732|GARNL3|84253|GTPase activating Rap/RanGAP domain-like 3##AK095679|GARNL3|84253|GTPase activating Rap/RanGAP domain-like 3##NM_012098|ANGPTL2|23452|angiopoietin-like 2##AY358274|ANGPTL2|23452|angiopoietin-like 2##AK312876|ANGPTL2|23452|angiopoietin-like 2##BC019043|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##NM_014580|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##Y17801|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##AJ245937|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##DQ892909|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##DQ896160|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##AF289587|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##NM_007135|ZNF79|7633|zinc finger protein 79##AK054606|ZNF79|7633|zinc finger protein 79##BC062309|ZNF79|7633|zinc finger protein 79##AK302284|ZNF79|7633|zinc finger protein 79	2.753183	denovo_WM_21:-15:0.917	denovo_WM_21:47:0.965	denovo_WM_21:110:0.858
chr12	46121409	46121479	reg1000558.p2	7.157	+	TSC_hg19_v1_chr12_-_46121280 BC037237 BC008245	-171	-	AL832340 NM_001142678	-434979	+	TSC_hg19_v1_chr12_+_45609916 BC098410	-511537	+	TSC_hg19_v1_chr12_-_46121531 BC047417	86	-	TSC_hg19_v1_chr12_+_46123488 AK127872	2039	+	TSC_hg19_v1_chr12_+_46123498 AB527360 AY727870 DQ096628 NM_152641 CR749833	2153	+	BC037237|LOC400027|400027|uncharacterized LOC400027##BC008245|LOC400027|400027|uncharacterized LOC400027##AL832340|ANO6|196527|anoctamin 6##NM_001142678|ANO6|196527|anoctamin 6##BC098410|ANO6|196527|anoctamin 6##BC047417|LOC400027|400027|uncharacterized LOC400027##AK127872|ARID2|196528|AT rich interactive domain 2 (ARID, RFX-like)##AY727870|ARID2|196528|AT rich interactive domain 2 (ARID, RFX-like)##DQ096628|ARID2|196528|AT rich interactive domain 2 (ARID, RFX-like)##NM_152641|ARID2|196528|AT rich interactive domain 2 (ARID, RFX-like)##CR749833|ARID2|196528|AT rich interactive domain 2 (ARID, RFX-like)	0.0	
chr1	45140225	45140362	reg1000398.p1	7.154	+	AK296548 TSC_hg19_v1_chr1_-_45140143 BC007521	-145	-	CR457348 AK026006 AK225405 TSC_hg19_v1_chr1_-_45140099 BC064520 NM_024587 AL832539	-206	-	TSC_hg19_v1_chr1_+_45097700 AK296038 AK225180	-42531	+	BC026115 NM_001145636	100	+	TSC_hg19_v1_chr1_+_45205518 AB264115 NM_006845	65205	+	AK124208 AK300756 AK312606 TSC_hg19_v1_chr1_+_45205533 BC008764 U63743 BC014924	65249	+	AK296548|TMEM53|79639|transmembrane protein 53##BC007521|TMEM53|79639|transmembrane protein 53##CR457348|TMEM53|79639|transmembrane protein 53##AK026006|TMEM53|79639|transmembrane protein 53##AK225405|TMEM53|79639|transmembrane protein 53##BC064520|TMEM53|79639|transmembrane protein 53##NM_024587|TMEM53|79639|transmembrane protein 53##AL832539|TMEM53|79639|transmembrane protein 53##AK296038|RNF220|55182|ring finger protein 220##AK225180|RNF220|55182|ring finger protein 220##BC026115|C1orf228|339541|chromosome 1 open reading frame 228##NM_001145636|C1orf228|339541|chromosome 1 open reading frame 228##AB264115|KIF2C|11004|kinesin family member 2C##NM_006845|KIF2C|11004|kinesin family member 2C##AK300756|KIF2C|11004|kinesin family member 2C##AK312606|KIF2C|11004|kinesin family member 2C##BC008764|KIF2C|11004|kinesin family member 2C##U63743|KIF2C|11004|kinesin family member 2C##BC014924|KIF2C|11004|kinesin family member 2C	0.162656	
chr14	24584314	24584405	reg1000310.p1	7.145	+	TSC_hg19_v1_chr14_-_24584230 BX161381	-175	-	TSC_hg19_v1_chr14_+_24584020 AK074296 AK307849 BC067132	-332	+	TSC_hg19_v1_chr14_+_24583985 NM_025230 AB209073	-367	+	AF267858 TSC_hg19_v1_chr14_+_24584412	31	+	TSC_hg19_v1_chr14_+_24584483 AK094478 BX648224 AK292797 NM_181357 AK057636 AK296742 BX247970 BX161405 AF130070	281	+	BC139911 NM_203402 TSC_hg19_v1_chr14_+_24600824	16390	+	BX161381|NRL|4901|neural retina leucine zipper##AK074296|DCAF11|80344|DDB1 and CUL4 associated factor 11##AK307849|DCAF11|80344|DDB1 and CUL4 associated factor 11##BC067132|DCAF11|80344|DDB1 and CUL4 associated factor 11##NM_025230|DCAF11|80344|DDB1 and CUL4 associated factor 11##AB209073|DCAF11|80344|DDB1 and CUL4 associated factor 11##AF267858|DCAF11|80344|DDB1 and CUL4 associated factor 11##AK094478|DCAF11|80344|DDB1 and CUL4 associated factor 11##BX648224|DCAF11|80344|DDB1 and CUL4 associated factor 11##AK292797|DCAF11|80344|DDB1 and CUL4 associated factor 11##NM_181357|DCAF11|80344|DDB1 and CUL4 associated factor 11##AK057636|DCAF11|80344|DDB1 and CUL4 associated factor 11##AK296742|DCAF11|80344|DDB1 and CUL4 associated factor 11##BX247970|DCAF11|80344|DDB1 and CUL4 associated factor 11##BX161405|DCAF11|80344|DDB1 and CUL4 associated factor 11##AF130070|DCAF11|80344|DDB1 and CUL4 associated factor 11##BC139911|FITM1|161247|fat storage-inducing transmembrane protein 1##NM_203402|FITM1|161247|fat storage-inducing transmembrane protein 1	3.380723	denovo_WM_21:12:0.710	denovo_WM_21:-38:0.981	denovo_WM_21:64:0.764	denovo_WM_21:-80:0.925
chr16	66914295	66914431	reg1000733.p1	7.126	+	AY075020 NM_001014435	-35523	+	AY075019 NM_005182 BC033865 DQ895264 EU176243	-36028	+	TSC_hg19_v1_chr16_-_66864880 U50939 AK307677 AK097680 AK312784 NM_001018159 NM_001018160 NM_003905	-49477	-	TSC_hg19_v1_chr16_+_66914417 AK292539 NM_020786 AB037769 BC028030	81	+	AF016272 AK225544 AK298255 AK225552 AK298334 AK313101 AK075243 AY358911 NM_001204744 NM_001204745 NM_001204746 NM_004062	38444	-	L24564 BC011645 AK290613 BC057815 NM_001128850 NM_004165	45065	-	AY075020|CA7|766|carbonic anhydrase VII##NM_001014435|CA7|766|carbonic anhydrase VII##AY075019|CA7|766|carbonic anhydrase VII##NM_005182|CA7|766|carbonic anhydrase VII##BC033865|CA7|766|carbonic anhydrase VII##DQ895264|CA7|766|carbonic anhydrase VII##EU176243|CA7|766|carbonic anhydrase VII##U50939|NAE1|8883|NEDD8 activating enzyme E1 subunit 1##AK307677|NAE1|8883|NEDD8 activating enzyme E1 subunit 1##AK097680|NAE1|8883|NEDD8 activating enzyme E1 subunit 1##AK312784|NAE1|8883|NEDD8 activating enzyme E1 subunit 1##NM_001018159|NAE1|8883|NEDD8 activating enzyme E1 subunit 1##NM_001018160|NAE1|8883|NEDD8 activating enzyme E1 subunit 1##NM_003905|NAE1|8883|NEDD8 activating enzyme E1 subunit 1##AK292539|PDP2|57546|pyruvate dehyrogenase phosphatase catalytic subunit 2##NM_020786|PDP2|57546|pyruvate dehyrogenase phosphatase catalytic subunit 2##AB037769|PDP2|57546|pyruvate dehyrogenase phosphatase catalytic subunit 2##BC028030|PDP2|57546|pyruvate dehyrogenase phosphatase catalytic subunit 2##AF016272|CDH16|1014|cadherin 16, KSP-cadherin##AK225544|CDH16|1014|cadherin 16, KSP-cadherin##AK298255|CDH16|1014|cadherin 16, KSP-cadherin##AK225552|CDH16|1014|cadherin 16, KSP-cadherin##AK298334|CDH16|1014|cadherin 16, KSP-cadherin##AK313101|CDH16|1014|cadherin 16, KSP-cadherin##AK075243|CDH16|1014|cadherin 16, KSP-cadherin##AY358911|CDH16|1014|cadherin 16, KSP-cadherin##NM_001204744|CDH16|1014|cadherin 16, KSP-cadherin##NM_001204745|CDH16|1014|cadherin 16, KSP-cadherin##NM_001204746|CDH16|1014|cadherin 16, KSP-cadherin##NM_004062|CDH16|1014|cadherin 16, KSP-cadherin##L24564|RRAD|6236|Ras-related associated with diabetes##BC011645|RRAD|6236|Ras-related associated with diabetes##AK290613|RRAD|6236|Ras-related associated with diabetes##BC057815|RRAD|6236|Ras-related associated with diabetes##NM_001128850|RRAD|6236|Ras-related associated with diabetes##NM_004165|RRAD|6236|Ras-related associated with diabetes	0.174109	
chr3	152879053	152879202	reg1000660.p1	7.122	+	NM_002563 Z49205	-326392	+	AY358260 NM_001123228	-820349	-	NM_207293 NM_207294 NM_207295 NM_207296 NM_207297	-861934	+	TSC_hg19_v1_chr3_+_152880029 NM_002886	899	+	TSC_hg19_v1_chr3_+_152880058 BC012362	921	+	AF086445 NM_001101337	323156	+	NM_002563|P2RY1|5028|purinergic receptor P2Y, G-protein coupled, 1##Z49205|P2RY1|5028|purinergic receptor P2Y, G-protein coupled, 1##AY358260|TMEM14E|645843|transmembrane protein 14E##NM_001123228|TMEM14E|645843|transmembrane protein 14E##NM_207293|MBNL1|4154|muscleblind-like (Drosophila)##NM_207294|MBNL1|4154|muscleblind-like (Drosophila)##NM_207295|MBNL1|4154|muscleblind-like (Drosophila)##NM_207296|MBNL1|4154|muscleblind-like (Drosophila)##NM_207297|MBNL1|4154|muscleblind-like (Drosophila)##NM_002886|RAP2B|5912|RAP2B, member of RAS oncogene family##BC012362|RAP2B|5912|RAP2B, member of RAS oncogene family##AF086445|C3orf79|152118|chromosome 3 open reading frame 79##NM_001101337|C3orf79|152118|chromosome 3 open reading frame 79	1.576926	denovo_WM_21:-14:0.682	denovo_WM_21:27:0.542	denovo_WM_21:-81:0.352
chr12	49504668	49504803	reg1000685.p1	7.121	+	AY358572 AF260728 TSC_hg19_v1_chr12_-_49504681 AK310064 AK310674 NM_018113	-71	-	BC008337 TSC_hg19_v1_chr12_-_49504631 AK001651 AK298026	-112	-	CU677167 CU678919 CU689172 DQ892407 DQ895619 TSC_hg19_v1_chr12_-_49504467 BC015015 BC031550 AB033000 AK001356	-310	-	TSC_hg19_v1_chr12_+_49524671 BC037205	19984	+	BC015883 TSC_hg19_v1_chr12_-_49525141 BC017004 BC008659 K00558	20403	-	BC001128 BC009512 BC009314 BC006379 BC006481 BC010494 BC011572 BC018948 BC021564 BC009509 BC009513 DQ400107 BC000696 BC071904 TSC_hg19_v1_chr12_-_49525179 BC030820 AK026516 AK026632 AK057773 AK094717 AK098357 AK098635 AK098771 AK289354	20436	-	AY358572|LMBR1L|55716|limb region 1 homolog (mouse)-like##AF260728|LMBR1L|55716|limb region 1 homolog (mouse)-like##AK310064|LMBR1L|55716|limb region 1 homolog (mouse)-like##AK310674|LMBR1L|55716|limb region 1 homolog (mouse)-like##NM_018113|LMBR1L|55716|limb region 1 homolog (mouse)-like##BC008337|LMBR1L|55716|limb region 1 homolog (mouse)-like##AK001651|LMBR1L|55716|limb region 1 homolog (mouse)-like##AK298026|LMBR1L|55716|limb region 1 homolog (mouse)-like##DQ892407|LMBR1L|55716|limb region 1 homolog (mouse)-like##DQ895619|LMBR1L|55716|limb region 1 homolog (mouse)-like##BC015015|LMBR1L|55716|limb region 1 homolog (mouse)-like##BC031550|LMBR1L|55716|limb region 1 homolog (mouse)-like##AB033000|LMBR1L|55716|limb region 1 homolog (mouse)-like##AK001356|LMBR1L|55716|limb region 1 homolog (mouse)-like##BC015883|TUBA1B|10376|tubulin, alpha 1b##BC017004|TUBA1B|10376|tubulin, alpha 1b##BC008659|TUBA1B|10376|tubulin, alpha 1b##K00558|TUBA1B|10376|tubulin, alpha 1b##BC001128|TUBA1B|10376|tubulin, alpha 1b##BC009512|TUBA1B|10376|tubulin, alpha 1b##BC009314|TUBA1B|10376|tubulin, alpha 1b##BC006379|TUBA1B|10376|tubulin, alpha 1b##BC006481|TUBA1B|10376|tubulin, alpha 1b##BC010494|TUBA1B|10376|tubulin, alpha 1b##BC011572|TUBA1B|10376|tubulin, alpha 1b##BC018948|TUBA1B|10376|tubulin, alpha 1b##BC021564|TUBA1B|10376|tubulin, alpha 1b##BC009509|TUBA1B|10376|tubulin, alpha 1b##BC009513|TUBA1B|10376|tubulin, alpha 1b##DQ400107|TUBA1B|10376|tubulin, alpha 1b##BC000696|TUBA1B|10376|tubulin, alpha 1b##BC071904|TUBA1B|10376|tubulin, alpha 1b##BC030820|TUBA1B|10376|tubulin, alpha 1b##AK026516|TUBA1B|10376|tubulin, alpha 1b##AK026632|TUBA1B|10376|tubulin, alpha 1b##AK057773|TUBA1B|10376|tubulin, alpha 1b##AK094717|TUBA1B|10376|tubulin, alpha 1b##AK098357|TUBA1B|10376|tubulin, alpha 1b##AK098635|TUBA1B|10376|tubulin, alpha 1b##AK098771|TUBA1B|10376|tubulin, alpha 1b##AK289354|TUBA1B|10376|tubulin, alpha 1b	0.285871	denovo_WM_21:-17:0.233
chr7	64838606	64838761	reg1000803.p1	7.108	+	TSC_hg19_v1_chr7_+_64601445 AK057766	-237163	+	TSC_hg19_v1_chr7_+_64498727 BX649060 BC071617	-339977	+	TSC_hg19_v1_chr7_-_64467066 AK295189 AK097499 NM_001007253	-371619	-	TSC_hg19_v1_chr7_+_64838761 BX647875 NM_007139 NM_152626 BC040594	67	+	TSC_hg19_v1_chr7_+_64838793 AK091618 AX747097 BC036439 M61872	124	+	TSC_hg19_v1_chr7_-_65215912 BX647963	377235	-	AK057766|INTS4L1|285905|integrator complex subunit 4-like 1##BX649060|CCT6P3|643180|chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3##BC071617|CCT6P3|643180|chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3##AK295189|ERV3-1|2086|endogenous retrovirus group 3, member 1##NM_001007253|ERV3-1|2086|endogenous retrovirus group 3, member 1##BX647875|ZNF92|168374|zinc finger protein 92##NM_007139|ZNF92|168374|zinc finger protein 92##NM_152626|ZNF92|168374|zinc finger protein 92##BC040594|ZNF92|168374|zinc finger protein 92##AK091618|ZNF92|168374|zinc finger protein 92##BC036439|ZNF92|168374|zinc finger protein 92##M61872|ZNF92|168374|zinc finger protein 92	0.847442	denovo_WM_21:1:0.826
chr22	19435265	19435369	reg1000433.p1	7.095	+	BC030758 CU013050 CU013338 TSC_hg19_v1_chr22_-_19435224 AK299950 AK095271 AK308642 CR456339 BC046204 BC062599 AK289809	-89	-	TSC_hg19_v1_chr22_+_19420067 BC009707 NM_003776 AF034091 AJ295637 CR456532 AB528186 CU013132 CU013420 AK057708	-15270	+	TSC_hg19_v1_chr22_+_19419346 AK123768	-15935	+	AK290073 NM_001166242 NM_173793	423	-	CR456607 TSC_hg19_v1_chr22_-_19466707 AY101594 U64444 BC001049 BC005087 AK315998 AK225877 BX648483 AK304734 AK308786	31348	-	TSC_hg19_v1_chr22_-_19466712 AK310950	31396	-	BC030758|C22orf39|128977|chromosome 22 open reading frame 39##AK299950|HIRA|7290|HIR histone cell cycle regulation defective homolog A (S. cerevisiae)##AK095271|C22orf39|128977|chromosome 22 open reading frame 39##AK308642|HIRA|7290|HIR histone cell cycle regulation defective homolog A (S. cerevisiae)##CR456339|C22orf39|128977|chromosome 22 open reading frame 39##BC046204|C22orf39|128977|chromosome 22 open reading frame 39##BC062599|C22orf39|128977|chromosome 22 open reading frame 39##AK289809|HIRA|7290|HIR histone cell cycle regulation defective homolog A (S. cerevisiae)##BC009707|MRPL40|64976|mitochondrial ribosomal protein L40##NM_003776|MRPL40|64976|mitochondrial ribosomal protein L40##AF034091|MRPL40|64976|mitochondrial ribosomal protein L40##AJ295637|MRPL40|64976|mitochondrial ribosomal protein L40##CR456532|MRPL40|64976|mitochondrial ribosomal protein L40##CU013132|MRPL40|64976|mitochondrial ribosomal protein L40##CU013420|MRPL40|64976|mitochondrial ribosomal protein L40##AK057708|MRPL40|64976|mitochondrial ribosomal protein L40##AK123768|MRPL40|64976|mitochondrial ribosomal protein L40##AK290073|C22orf39|128977|chromosome 22 open reading frame 39##NM_001166242|C22orf39|128977|chromosome 22 open reading frame 39##NM_173793|C22orf39|128977|chromosome 22 open reading frame 39##CR456607|UFD1L|7353|ubiquitin fusion degradation 1 like (yeast)##AY101594|UFD1L|7353|ubiquitin fusion degradation 1 like (yeast)##U64444|UFD1L|7353|ubiquitin fusion degradation 1 like (yeast)##BC001049|UFD1L|7353|ubiquitin fusion degradation 1 like (yeast)##BC005087|UFD1L|7353|ubiquitin fusion degradation 1 like (yeast)##AK315998|UFD1L|7353|ubiquitin fusion degradation 1 like (yeast)##AK225877|UFD1L|7353|ubiquitin fusion degradation 1 like (yeast)##BX648483|UFD1L|7353|ubiquitin fusion degradation 1 like (yeast)##AK304734|UFD1L|7353|ubiquitin fusion degradation 1 like (yeast)##AK308786|UFD1L|7353|ubiquitin fusion degradation 1 like (yeast)##AK310950|UFD1L|7353|ubiquitin fusion degradation 1 like (yeast)	1.62474	denovo_WM_21:-57:0.925	denovo_WM_21:64:0.684
chr1	1334765	1334889	reg1000550.p1	7.088	+	AL834441 AK074112 AK056120 AY037150 TSC_hg19_v1_chr1_-_1334695 BC016333 AY116620 AK225758 NM_001039577 NM_030937	-143	-	NM_017900 TSC_hg19_v1_chr1_-_1310902	-23964	-	TSC_hg19_v1_chr1_-_1310563 NM_001127230 AK000615 NM_001127229 BC062333	-24254	-	TSC_hg19_v1_chr1_+_1334900 BC104242 BC104243 BC112998 BC112999 AK297832 AK024040 BC005108 BC068600 BC080546	99	+	TSC_hg19_v1_chr1_-_1342628 BC059945 AB049644 AK000886 AK315794 BC014316 BC071836 BC098413 BC009515	7801	-	TSC_hg19_v1_chr1_-_1342671 AK301440 NM_017971	7854	-	AL834441|CCNL2|81669|cyclin L2##AK074112|CCNL2|81669|cyclin L2##AK056120|CCNL2|81669|cyclin L2##AY037150|CCNL2|81669|cyclin L2##BC016333|CCNL2|81669|cyclin L2##AY116620|CCNL2|81669|cyclin L2##AK225758|CCNL2|81669|cyclin L2##NM_001039577|CCNL2|81669|cyclin L2##NM_030937|CCNL2|81669|cyclin L2##NM_017900|AURKAIP1|54998|aurora kinase A interacting protein 1##NM_001127230|AURKAIP1|54998|aurora kinase A interacting protein 1##AK000615|AURKAIP1|54998|aurora kinase A interacting protein 1##NM_001127229|AURKAIP1|54998|aurora kinase A interacting protein 1##BC062333|AURKAIP1|54998|aurora kinase A interacting protein 1##BC104242|LOC148413|148413|uncharacterized LOC148413##BC104243|LOC148413|148413|uncharacterized LOC148413##BC112998|LOC148413|148413|uncharacterized LOC148413##BC112999|LOC148413|148413|uncharacterized LOC148413##AK297832|LOC148413|148413|uncharacterized LOC148413##AK024040|LOC148413|148413|uncharacterized LOC148413##BC005108|LOC148413|148413|uncharacterized LOC148413##BC068600|LOC148413|148413|uncharacterized LOC148413##BC080546|LOC148413|148413|uncharacterized LOC148413##BC059945|MRPL20|55052|mitochondrial ribosomal protein L20##AB049644|MRPL20|55052|mitochondrial ribosomal protein L20##AK000886|MRPL20|55052|mitochondrial ribosomal protein L20##AK315794|MRPL20|55052|mitochondrial ribosomal protein L20##BC014316|MRPL20|55052|mitochondrial ribosomal protein L20##BC009515|MRPL20|55052|mitochondrial ribosomal protein L20##NM_017971|MRPL20|55052|mitochondrial ribosomal protein L20	0.037924	
chr17	4870796	4870909	reg1000026.p2	7.086	+	NM_001193503 NM_001976 NM_053013 TSC_hg19_v1_chr17_+_4854406 AK300662 AK300673 AK300709 AK309864 BC017249	-16448	+	TSC_hg19_v1_chr17_-_4851828 BC057828	-19008	-	TSC_hg19_v1_chr17_-_4851824 BC006768 BC013439 BC002475 J03191 BC015164 AK312168 D28377 NM_005022	-19042	-	BC007819 BC011934 TSC_hg19_v1_chr17_-_4871113 AF047437 AK312174 NM_004890	259	-	AL831849 NM_001171167 NM_001171168 TSC_hg19_v1_chr17_-_4890732	19848	-	AB020716 BC167148 BC167149 BC167151 BC167160 EU832136 EU832229 TSC_hg19_v1_chr17_-_4890947 AK302528 AL833974 BC142695 NM_001171166 NM_015099	20100	-	NM_001193503|ENO3|2027|enolase 3 (beta, muscle)##NM_001976|ENO3|2027|enolase 3 (beta, muscle)##NM_053013|ENO3|2027|enolase 3 (beta, muscle)##AK300662|ENO3|2027|enolase 3 (beta, muscle)##AK300673|ENO3|2027|enolase 3 (beta, muscle)##AK300709|ENO3|2027|enolase 3 (beta, muscle)##AK309864|ENO3|2027|enolase 3 (beta, muscle)##BC017249|ENO3|2027|enolase 3 (beta, muscle)##BC057828|PFN1|5216|profilin 1##BC006768|PFN1|5216|profilin 1##BC013439|PFN1|5216|profilin 1##BC002475|PFN1|5216|profilin 1##J03191|PFN1|5216|profilin 1##BC015164|PFN1|5216|profilin 1##AK312168|PFN1|5216|profilin 1##D28377|PFN1|5216|profilin 1##NM_005022|PFN1|5216|profilin 1##BC007819|SPAG7|9552|sperm associated antigen 7##BC011934|SPAG7|9552|sperm associated antigen 7##AF047437|SPAG7|9552|sperm associated antigen 7##AK312174|SPAG7|9552|sperm associated antigen 7##NM_004890|SPAG7|9552|sperm associated antigen 7##AL831849|CAMTA2|23125|calmodulin binding transcription activator 2##NM_001171167|CAMTA2|23125|calmodulin binding transcription activator 2##NM_001171168|CAMTA2|23125|calmodulin binding transcription activator 2##AB020716|CAMTA2|23125|calmodulin binding transcription activator 2##BC167148|CAMTA2|23125|calmodulin binding transcription activator 2##BC167149|CAMTA2|23125|calmodulin binding transcription activator 2##BC167151|CAMTA2|23125|calmodulin binding transcription activator 2##BC167160|CAMTA2|23125|calmodulin binding transcription activator 2##EU832136|CAMTA2|23125|calmodulin binding transcription activator 2##EU832229|CAMTA2|23125|calmodulin binding transcription activator 2##AK302528|CAMTA2|23125|calmodulin binding transcription activator 2##AL833974|CAMTA2|23125|calmodulin binding transcription activator 2##BC142695|CAMTA2|23125|calmodulin binding transcription activator 2##NM_001171166|CAMTA2|23125|calmodulin binding transcription activator 2##NM_015099|CAMTA2|23125|calmodulin binding transcription activator 2	0.503975	denovo_WM_21:-12:0.475
chr2	174830100	174830238	reg1000645.p1	7.086	+	BC126414 BC143928 AK304199 TSC_hg19_v1_chr2_-_174830067	-160	-	TSC_hg19_v1_chr2_-_174829232 AJ310752 AJ430844 AY441958 AB528284	-975	-	TSC_hg19_v1_chr2_-_174828899 AY070137 NM_001017371	-1297	-	AY441957 NM_001172712 NM_003111	260	-	BC068447 TSC_hg19_v1_chr2_-_175113235 BC013925 BC091522 DQ250006	283048	-	TSC_hg19_v1_chr2_-_175113245 AK296339 BC029376 AF134478	283076	-	BC126414|SP3|6670|Sp3 transcription factor##BC143928|SP3|6670|Sp3 transcription factor##AK304199|SP3|6670|Sp3 transcription factor##AJ310752|SP3|6670|Sp3 transcription factor##AY441958|SP3|6670|Sp3 transcription factor##AY070137|SP3|6670|Sp3 transcription factor##NM_001017371|SP3|6670|Sp3 transcription factor##AY441957|SP3|6670|Sp3 transcription factor##NM_001172712|SP3|6670|Sp3 transcription factor##NM_003111|SP3|6670|Sp3 transcription factor##BC068447|OLA1|29789|Obg-like ATPase 1##BC013925|OLA1|29789|Obg-like ATPase 1##BC091522|OLA1|29789|Obg-like ATPase 1##DQ250006|OLA1|29789|Obg-like ATPase 1##AK296339|OLA1|29789|Obg-like ATPase 1##BC029376|OLA1|29789|Obg-like ATPase 1##AF134478|OLA1|29789|Obg-like ATPase 1	1.111168	denovo_WM_21:2:0.795
chr16	9185283	9185381	reg1000438.p1	7.083	+	TSC_hg19_v1_chr16_-_9057250 NM_003470 Z72499	-128037	-	TSC_hg19_v1_chr16_-_8962864 BC108283 BC000782 AK093698 AK311777 NM_014316 BC003366	-222472	-	NM_001042476 BC001333	-223080	-	TSC_hg19_v1_chr16_+_9185545 NM_014117	208	+	TSC_hg19_v1_chr16_+_9185577 BC113570	271	+	BC143273 U09002 NM_001134408	1090501	-	NM_003470|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##Z72499|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##BC108283|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC000782|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##AK093698|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##AK311777|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_014316|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC003366|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_001042476|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC001333|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_014117|C16orf72|29035|chromosome 16 open reading frame 72##BC113570|C16orf72|29035|chromosome 16 open reading frame 72##BC143273|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U09002|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134408|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A	0.580236	denovo_WM_21:-28:0.564
chr4	124239	124354	reg1000493.p1	7.082	+	TSC_hg19_v1_chr4_+_53214 AK300505 AK311343 BC036110 BC043151 AK301848 AK309855 AK056302 BC020836 BC009008 BX537887 NM_182524	-71072	+	None	None	None	None	None	None	TSC_hg19_v1_chr4_+_124389 AK096662 AL833758 BC104026 BC104028	78	+	AK302099 NM_001137608	165647	-	TSC_hg19_v1_chr4_+_331602 NM_003441	207299	+	AK300505|ZNF595|152687|zinc finger protein 595##BC036110|ZNF595|152687|zinc finger protein 595##BC043151|ZNF595|152687|zinc finger protein 595##AK301848|ZNF595|152687|zinc finger protein 595##AK309855|ZNF595|152687|zinc finger protein 595##AK056302|ZNF595|152687|zinc finger protein 595##BC020836|ZNF718|255403|zinc finger protein 718##BX537887|ZNF595|152687|zinc finger protein 595##NM_182524|ZNF595|152687|zinc finger protein 595##AK096662|ZNF718|255403|zinc finger protein 718##AL833758|ZNF718|255403|zinc finger protein 718##BC104026|ZNF718|255403|zinc finger protein 718##BC104028|ZNF718|255403|zinc finger protein 718##AK302099|ZNF732|654254|zinc finger protein 732##NM_001137608|ZNF732|654254|zinc finger protein 732##NM_003441|ZNF141|7700|zinc finger protein 141	0.566465	denovo_WM_21:12:0.566
chr19	8408174	8408291	reg1000692.p1	7.074	+	BC035849 TSC_hg19_v1_chr19_-_8408147 AB284126 AK097023 AK128815 BC066124 BC066775 NM_198471	-97	-	TSC_hg19_v1_chr19_+_8386383 AB055779 AK293636 AK301638 AK311925 BC070217 NM_001031 BC070218 BC000354 BC018810 L05091 U58682 BC021239 DQ891357 DQ894538 CR457055	-21838	+	TSC_hg19_v1_chr19_-_8386300 BC003102 NM_005001	-21946	-	NM_001039667 NM_139314 TSC_hg19_v1_chr19_+_8429039 AB056477 AF202636 AK222489 AK303269 AK222524 AY358275 AF153606 BC023647 AF169312 CU692818	20875	+	TSC_hg19_v1_chr19_+_8455237 NM_004218 AK310573	46987	+	TSC_hg19_v1_chr19_+_8455246 AK312994	47019	+	BC035849|KANK3|256949|KN motif and ankyrin repeat domains 3##AB284126|KANK3|256949|KN motif and ankyrin repeat domains 3##AK128815|KANK3|256949|KN motif and ankyrin repeat domains 3##BC066124|KANK3|256949|KN motif and ankyrin repeat domains 3##BC066775|KANK3|256949|KN motif and ankyrin repeat domains 3##NM_198471|KANK3|256949|KN motif and ankyrin repeat domains 3##AK293636|RPS28|6234|ribosomal protein S28##AK301638|RPS28|6234|ribosomal protein S28##AK311925|RPS28|6234|ribosomal protein S28##BC070217|RPS28|6234|ribosomal protein S28##NM_001031|RPS28|6234|ribosomal protein S28##BC070218|RPS28|6234|ribosomal protein S28##BC000354|RPS28|6234|ribosomal protein S28##BC018810|RPS28|6234|ribosomal protein S28##L05091|RPS28|6234|ribosomal protein S28##U58682|RPS28|6234|ribosomal protein S28##BC021239|RPS28|6234|ribosomal protein S28##DQ891357|RPS28|6234|ribosomal protein S28##DQ894538|RPS28|6234|ribosomal protein S28##CR457055|RPS28|6234|ribosomal protein S28##BC003102|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##NM_005001|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##NM_001039667|ANGPTL4|51129|angiopoietin-like 4##NM_139314|ANGPTL4|51129|angiopoietin-like 4##AB056477|ANGPTL4|51129|angiopoietin-like 4##AF202636|ANGPTL4|51129|angiopoietin-like 4##AK222489|ANGPTL4|51129|angiopoietin-like 4##AK303269|ANGPTL4|51129|angiopoietin-like 4##AK222524|ANGPTL4|51129|angiopoietin-like 4##AY358275|ANGPTL4|51129|angiopoietin-like 4##AF153606|ANGPTL4|51129|angiopoietin-like 4##BC023647|ANGPTL4|51129|angiopoietin-like 4##AF169312|ANGPTL4|51129|angiopoietin-like 4##NM_004218|RAB11B|9230|RAB11B, member RAS oncogene family##AK312994|RAB11B|9230|RAB11B, member RAS oncogene family	0.194614	
chr2	64978447	64978548	reg1000247.p2	7.062	+	TSC_hg19_v1_chr2_-_64881051 D50917 NM_014755 AK311117	-97450	-	BC074788 BC074789 BC101639 BC101641 TSC_hg19_v1_chr2_-_64880905	-97648	-	TSC_hg19_v1_chr2_+_64751580 AL833962	-226895	+	TSC_hg19_v1_chr2_-_65090764 AK097952	112244	-	TSC_hg19_v1_chr2_-_65159574 BC037562	181080	-	TSC_hg19_v1_chr2_+_65215619 NM_001193493 AK295687	237103	+	D50917|SERTAD2|9792|SERTA domain containing 2##NM_014755|SERTAD2|9792|SERTA domain containing 2##AK311117|SERTAD2|9792|SERTA domain containing 2##BC074788|SERTAD2|9792|SERTA domain containing 2##BC074789|SERTAD2|9792|SERTA domain containing 2##BC101639|SERTAD2|9792|SERTA domain containing 2##BC101641|SERTAD2|9792|SERTA domain containing 2##AL833962|AFTPH|54812|aftiphilin##BC037562|LOC400958|400958|uncharacterized LOC400958##NM_001193493|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK295687|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	0.640854	denovo_WM_21:17:0.641
chr19	41770155	41770251	reg1000102.p2	7.058	+	TSC_hg19_v1_chr19_+_41770226 NM_007040 AJ007509	-54	+	TSC_hg19_v1_chr19_+_41768461 NM_144732 AK225850 AK023006 AK308078	-1736	+	TSC_hg19_v1_chr19_+_41725293 AK310881 AB385214 DQ894117	-44915	+	TSC_hg19_v1_chr19_+_41770281 AK022863 AK127057 AK291762 AK308156	74	+	TSC_hg19_v1_chr19_+_41770326 BC009988	103	+	AK291315 TSC_hg19_v1_chr19_+_41770329	126	+	NM_007040|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AJ007509|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##NM_144732|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK225850|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK023006|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK308078|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK310881|AXL|558|AXL receptor tyrosine kinase##DQ894117|AXL|558|AXL receptor tyrosine kinase##AK022863|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK127057|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK291762|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK308156|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##BC009988|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK291315|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1	1.076264	denovo_WM_21:-31:0.994
chr14	21458006	21458120	reg1000750.p1	7.054	+	NM_001029991 NM_022734	-99	+	TSC_hg19_v1_chr14_+_21423628 NM_002934 X55988 BC093678 BC093680 M28129 M24157 BC096059 M30510	-34415	+	TSC_hg19_v1_chr14_+_21359543 NM_002935 X15161 M28128 BC096060 BC096061 BC096062	-98504	+	TSC_hg19_v1_chr14_+_21458138 AF321002 AK024512 AK303484 AK304180 AK315999 BC005053 AB590821 CU674975	83	+	NM_014579 AK314974 AF186081 D83039 BC096723 BC098254 BC098274 BC110057 AB527985	9446	+	AK096999 TSC_hg19_v1_chr14_-_21493221 CR749252 BX647748 AF087872 AK024521 AK090657 AK130029 AX746561 AK057843 AK057847 NM_201538 NM_201539 NM_201540 NM_201541	35133	-	NM_001029991|METTL17|64745|methyltransferase like 17##NM_022734|METTL17|64745|methyltransferase like 17##NM_002934|RNASE2|6036|ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin)##X55988|RNASE2|6036|ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin)##BC093678|RNASE2|6036|ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin)##BC093680|RNASE2|6036|ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin)##M28129|RNASE2|6036|ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin)##M24157|RNASE2|6036|ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin)##BC096059|RNASE2|6036|ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin)##M30510|RNASE2|6036|ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin)##NM_002935|RNASE3|6037|ribonuclease, RNase A family, 3##X15161|RNASE3|6037|ribonuclease, RNase A family, 3##M28128|RNASE3|6037|ribonuclease, RNase A family, 3##BC096060|RNASE3|6037|ribonuclease, RNase A family, 3##BC096061|RNASE3|6037|ribonuclease, RNase A family, 3##BC096062|RNASE3|6037|ribonuclease, RNase A family, 3##AF321002|METTL17|64745|methyltransferase like 17##AK024512|METTL17|64745|methyltransferase like 17##AK303484|METTL17|64745|methyltransferase like 17##AK304180|METTL17|64745|methyltransferase like 17##AK315999|METTL17|64745|methyltransferase like 17##BC005053|METTL17|64745|methyltransferase like 17##NM_014579|SLC39A2|29986|solute carrier family 39 (zinc transporter), member 2##AK314974|SLC39A2|29986|solute carrier family 39 (zinc transporter), member 2##AF186081|SLC39A2|29986|solute carrier family 39 (zinc transporter), member 2##D83039|SLC39A2|29986|solute carrier family 39 (zinc transporter), member 2##BC096723|SLC39A2|29986|solute carrier family 39 (zinc transporter), member 2##BC098254|SLC39A2|29986|solute carrier family 39 (zinc transporter), member 2##BC098274|SLC39A2|29986|solute carrier family 39 (zinc transporter), member 2##BC110057|SLC39A2|29986|solute carrier family 39 (zinc transporter), member 2##AK096999|NDRG2|57447|NDRG family member 2##CR749252|NDRG2|57447|NDRG family member 2##BX647748|NDRG2|57447|NDRG family member 2##AF087872|NDRG2|57447|NDRG family member 2##AK024521|NDRG2|57447|NDRG family member 2##AK090657|NDRG2|57447|NDRG family member 2##AK130029|NDRG2|57447|NDRG family member 2##AK057843|NDRG2|57447|NDRG family member 2##AK057847|NDRG2|57447|NDRG family member 2##NM_201538|NDRG2|57447|NDRG family member 2##NM_201539|NDRG2|57447|NDRG family member 2##NM_201540|NDRG2|57447|NDRG family member 2##NM_201541|NDRG2|57447|NDRG family member 2	1.335124	denovo_WM_21:-6:0.416	denovo_WM_21:-36:0.920
chr13	73301942	73302055	reg1000639.p2	7.029	+	TSC_hg19_v1_chr13_-_73301768 BC062361 BC013405 BC080523 AK025522 BC125183 NM_001071775	-167	-	TSC_hg19_v1_chr13_-_72441343 AF102546 AF356492 NM_004392 NM_080759 NM_080760	-860564	-	TSC_hg19_v1_chr13_-_72440621 AJ005670 AL079278	-861235	-	EU834129 TSC_hg19_v1_chr13_+_73302063 AK300758 BX648605 NM_024808 AK298608 AK291496 BC056876 BC025367 EU832508 EU832589	86	+	AB385417 TSC_hg19_v1_chr13_-_73355994 AB001743 AF330044	53989	-	AL832266 TSC_hg19_v1_chr13_-_73356067 AB023225 BC012468	54064	-	BC062361|MZT1|440145|mitotic spindle organizing protein 1##BC013405|MZT1|440145|mitotic spindle organizing protein 1##BC080523|MZT1|440145|mitotic spindle organizing protein 1##AK025522|MZT1|440145|mitotic spindle organizing protein 1##BC125183|MZT1|440145|mitotic spindle organizing protein 1##NM_001071775|MZT1|440145|mitotic spindle organizing protein 1##AF102546|DACH1|1602|dachshund homolog 1 (Drosophila)##AF356492|DACH1|1602|dachshund homolog 1 (Drosophila)##NM_004392|DACH1|1602|dachshund homolog 1 (Drosophila)##NM_080759|DACH1|1602|dachshund homolog 1 (Drosophila)##NM_080760|DACH1|1602|dachshund homolog 1 (Drosophila)##AJ005670|DACH1|1602|dachshund homolog 1 (Drosophila)##AL079278|DACH1|1602|dachshund homolog 1 (Drosophila)##EU834129|BORA|79866|bora, aurora kinase A activator##AK300758|BORA|79866|bora, aurora kinase A activator##BX648605|BORA|79866|bora, aurora kinase A activator##NM_024808|BORA|79866|bora, aurora kinase A activator##AK298608|BORA|79866|bora, aurora kinase A activator##AK291496|BORA|79866|bora, aurora kinase A activator##BC056876|BORA|79866|bora, aurora kinase A activator##BC025367|BORA|79866|bora, aurora kinase A activator##EU832508|BORA|79866|bora, aurora kinase A activator##EU832589|BORA|79866|bora, aurora kinase A activator##AB001743|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##AF330044|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##AL832266|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##AB023225|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##BC012468|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)	0.132982	
chr9	130830136	130830281	reg1000024.p2	7.014	+	AK122729 NM_197956	-610	-	TSC_hg19_v1_chr9_-_130742813 AK058004 NM_001035254	-87399	-	BC137087 BC137088 BC047949 NM_203305 BC142952	-117277	-	TSC_hg19_v1_chr9_+_130830492 AK290991 NM_001006641	275	+	AJ619990 TSC_hg19_v1_chr9_+_130830643	411	+	NM_001006642 AJ619991	23926	+	AK122729|NAIF1|203245|nuclear apoptosis inducing factor 1##NM_197956|NAIF1|203245|nuclear apoptosis inducing factor 1##AK058004|FAM102A|399665|family with sequence similarity 102, member A##NM_001035254|FAM102A|399665|family with sequence similarity 102, member A##BC137087|FAM102A|399665|family with sequence similarity 102, member A##BC137088|FAM102A|399665|family with sequence similarity 102, member A##BC047949|FAM102A|399665|family with sequence similarity 102, member A##NM_203305|FAM102A|399665|family with sequence similarity 102, member A##BC142952|FAM102A|399665|family with sequence similarity 102, member A##AK290991|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25##NM_001006641|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25##AJ619990|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25##NM_001006642|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25##AJ619991|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25	0.047209	
chrX	48958150	48958282	reg1000793.p1	7.009	+	TSC_hg19_v1_chrX_-_48958083 BC069206 NM_007075	-124	-	AK023344 TSC_hg19_v1_chrX_-_48937565 NM_001029896	-20644	-	TSC_hg19_v1_chrX_-_48937549 AJ005897 AK225122 AK301084 AK294088 AK315717 BC000464 BC003037	-20709	-	AB209806 CU674194 BC000397 BC003148 NM_015698 TSC_hg19_v1_chrX_-_48980086 AK310728 U66359	21884	-	BC067800 NM_001099681 NM_001099682 NM_024859 BC027995	60979	+	TSC_hg19_v1_chrX_+_49020239 AK025340 AK094251 NM_001099680	62038	+	BC069206|WDR45|11152|WD repeat domain 45##NM_007075|WDR45|11152|WD repeat domain 45##AK023344|WDR45|11152|WD repeat domain 45##NM_001029896|WDR45|11152|WD repeat domain 45##AJ005897|WDR45|11152|WD repeat domain 45##AK225122|WDR45|11152|WD repeat domain 45##AK301084|WDR45|11152|WD repeat domain 45##AK315717|WDR45|11152|WD repeat domain 45##BC000464|WDR45|11152|WD repeat domain 45##BC003037|WDR45|11152|WD repeat domain 45##AB209806|GPKOW|27238|G patch domain and KOW motifs##BC000397|GPKOW|27238|G patch domain and KOW motifs##BC003148|GPKOW|27238|G patch domain and KOW motifs##NM_015698|GPKOW|27238|G patch domain and KOW motifs##U66359|GPKOW|27238|G patch domain and KOW motifs##BC067800|MAGIX|79917|MAGI family member, X-linked##NM_001099681|MAGIX|79917|MAGI family member, X-linked##NM_001099682|MAGIX|79917|MAGI family member, X-linked##NM_024859|MAGIX|79917|MAGI family member, X-linked##BC027995|MAGIX|79917|MAGI family member, X-linked##AK025340|MAGIX|79917|MAGI family member, X-linked##AK094251|MAGIX|79917|MAGI family member, X-linked##NM_001099680|MAGIX|79917|MAGI family member, X-linked	1.849348	denovo_WM_21:1:0.806	denovo_WM_21:33:0.981
chr20	30311420	30311532	reg1000751.p2	7.006	+	TSC_hg19_v1_chr20_-_30310672 AY263336 BC019307 NM_001191 NM_138578 AK290968 AY263335 CR936637	-810	-	BC032024 TSC_hg19_v1_chr20_-_30288101	-23379	-	AF257180 NM_032609 BC057779	-85774	+	TSC_hg19_v1_chr20_-_30311772 BX647525	264	-	NM_012112 TSC_hg19_v1_chr20_+_30327092 AK312549 AB024704 AF098158 AF287265 BC020207 BC004136	15561	+	AJ272502 BC092413 NM_033118 BX647635	95708	+	AY263336|BCL2L1|598|BCL2-like 1##BC019307|BCL2L1|598|BCL2-like 1##NM_001191|BCL2L1|598|BCL2-like 1##NM_138578|BCL2L1|598|BCL2-like 1##AK290968|BCL2L1|598|BCL2-like 1##AY263335|BCL2L1|598|BCL2-like 1##CR936637|BCL2L1|598|BCL2-like 1##AF257180|COX4I2|84701|cytochrome c oxidase subunit IV isoform 2 (lung)##NM_032609|COX4I2|84701|cytochrome c oxidase subunit IV isoform 2 (lung)##BC057779|COX4I2|84701|cytochrome c oxidase subunit IV isoform 2 (lung)##BX647525|BCL2L1|598|BCL2-like 1##NM_012112|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##AK312549|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##AB024704|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##AF098158|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##AF287265|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##BC020207|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##BC004136|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##AJ272502|MYLK2|85366|myosin light chain kinase 2##BC092413|MYLK2|85366|myosin light chain kinase 2##NM_033118|MYLK2|85366|myosin light chain kinase 2##BX647635|MYLK2|85366|myosin light chain kinase 2	1.024439	denovo_WM_21:-26:0.966
chr8	57124189	57124319	reg1000621.p1	7.005	+	AK296933 AK313663 NM_001114634 NM_001114635 NM_002655 TSC_hg19_v1_chr8_-_57123860	-393	-	TSC_hg19_v1_chr8_-_57123833 U65002	-419	-	AB464742 BC069569 BC069590 BC106737 BC106738 NM_005372	-97714	-	NM_001011667 NM_001011668 NM_001011669 NM_001011670 NM_001011671 NM_024300 TSC_hg19_v1_chr8_+_57124314	60	+	TSC_hg19_v1_chr8_+_57124347 AK095922 AK098285 AK290088 AY070434 AK225982 BC002546	85	+	BC064525 AK057667 TSC_hg19_v1_chr8_-_57232687 BC037219	108416	-	AK296933|PLAG1|5324|pleiomorphic adenoma gene 1##AK313663|PLAG1|5324|pleiomorphic adenoma gene 1##NM_001114634|PLAG1|5324|pleiomorphic adenoma gene 1##NM_001114635|PLAG1|5324|pleiomorphic adenoma gene 1##NM_002655|PLAG1|5324|pleiomorphic adenoma gene 1##U65002|PLAG1|5324|pleiomorphic adenoma gene 1##BC069569|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC069590|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC106737|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC106738|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##NM_005372|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##NM_001011667|CHCHD7|79145|coiled-coil-helix-coiled-coil-helix domain containing 7##NM_001011668|CHCHD7|79145|coiled-coil-helix-coiled-coil-helix domain containing 7##NM_001011669|CHCHD7|79145|coiled-coil-helix-coiled-coil-helix domain containing 7##NM_001011670|CHCHD7|79145|coiled-coil-helix-coiled-coil-helix domain containing 7##NM_001011671|CHCHD7|79145|coiled-coil-helix-coiled-coil-helix domain containing 7##NM_024300|CHCHD7|79145|coiled-coil-helix-coiled-coil-helix domain containing 7##AK095922|CHCHD7|79145|coiled-coil-helix-coiled-coil-helix domain containing 7##AK098285|CHCHD7|79145|coiled-coil-helix-coiled-coil-helix domain containing 7##AK290088|CHCHD7|79145|coiled-coil-helix-coiled-coil-helix domain containing 7##AY070434|CHCHD7|79145|coiled-coil-helix-coiled-coil-helix domain containing 7##AK225982|CHCHD7|79145|coiled-coil-helix-coiled-coil-helix domain containing 7##BC002546|CHCHD7|79145|coiled-coil-helix-coiled-coil-helix domain containing 7##BC064525|SDR16C5|195814|short chain dehydrogenase/reductase family 16C, member 5##AK057667|SDR16C5|195814|short chain dehydrogenase/reductase family 16C, member 5##BC037219|SDR16C5|195814|short chain dehydrogenase/reductase family 16C, member 5	0.022187	
chr17	80416419	80416511	reg1000422.p1	6.997	+	TSC_hg19_v1_chr17_+_80416087 NM_001038618 AK056966	-393	+	TSC_hg19_v1_chr17_-_80408700 AK054876 AK309201 NM_001033046 NM_001100407 NM_001100408 NM_001193653 NM_001193654 NM_001193657	-7766	-	TSC_hg19_v1_chr17_-_80408647 AK027743	-7815	-	TSC_hg19_v1_chr17_+_80416583 AK297875 NM_001083608 NM_012336 NM_031968 BC000438 AK000929 AK303155 AK307351 AF128406	98	+	TSC_hg19_v1_chr17_+_80416616 BC016440 CU674220 CU677625	177	+	TSC_hg19_v1_chr17_+_80477607 NM_004514	61125	+	NM_001038618|NARF|26502|nuclear prelamin A recognition factor##AK056966|NARF|26502|nuclear prelamin A recognition factor##AK054876|C17orf62|79415|chromosome 17 open reading frame 62##AK309201|C17orf62|79415|chromosome 17 open reading frame 62##NM_001033046|C17orf62|79415|chromosome 17 open reading frame 62##NM_001100407|C17orf62|79415|chromosome 17 open reading frame 62##NM_001100408|C17orf62|79415|chromosome 17 open reading frame 62##NM_001193653|C17orf62|79415|chromosome 17 open reading frame 62##NM_001193654|C17orf62|79415|chromosome 17 open reading frame 62##NM_001193657|C17orf62|79415|chromosome 17 open reading frame 62##AK027743|C17orf62|79415|chromosome 17 open reading frame 62##AK297875|NARF|26502|nuclear prelamin A recognition factor##NM_001083608|NARF|26502|nuclear prelamin A recognition factor##NM_012336|NARF|26502|nuclear prelamin A recognition factor##NM_031968|NARF|26502|nuclear prelamin A recognition factor##BC000438|NARF|26502|nuclear prelamin A recognition factor##AK000929|NARF|26502|nuclear prelamin A recognition factor##AK303155|NARF|26502|nuclear prelamin A recognition factor##AF128406|NARF|26502|nuclear prelamin A recognition factor##BC016440|NARF|26502|nuclear prelamin A recognition factor##NM_004514|FOXK2|3607|forkhead box K2	3.367803	denovo_WM_21:0:0.836	denovo_WM_21:36:0.570	denovo_WM_21:-39:0.986	denovo_WM_21:76:0.976
chr19	55919582	55919726	reg1000753.p2	6.992	+	NM_014501 TSC_hg19_v1_chr19_-_55919377	-300	-	BC066948 M91670 TSC_hg19_v1_chr19_-_55919157 AB062397 BC004236 BC007554 BC065364	-585	-	TSC_hg19_v1_chr19_+_55897305 BC010182 BC010173 U14969	-22338	+	NM_001145176	34575	-	BC017344 TSC_hg19_v1_chr19_-_55972980	53309	-	AK311540 TSC_hg19_v1_chr19_-_55973007 AK027122	53355	-	NM_014501|UBE2S|27338|ubiquitin-conjugating enzyme E2S##BC066948|UBE2S|27338|ubiquitin-conjugating enzyme E2S##M91670|UBE2S|27338|ubiquitin-conjugating enzyme E2S##AB062397|UBE2S|27338|ubiquitin-conjugating enzyme E2S##BC004236|UBE2S|27338|ubiquitin-conjugating enzyme E2S##BC007554|UBE2S|27338|ubiquitin-conjugating enzyme E2S##BC065364|UBE2S|27338|ubiquitin-conjugating enzyme E2S##BC010182|RPL28|6158|ribosomal protein L28##BC010173|RPL28|6158|ribosomal protein L28##U14969|RPL28|6158|ribosomal protein L28##NM_001145176|SHISA7|729956|shisa homolog 7 (Xenopus laevis)##BC017344|ISOC2|79763|isochorismatase domain containing 2##AK311540|ISOC2|79763|isochorismatase domain containing 2##AK027122|ISOC2|79763|isochorismatase domain containing 2	0.825205	denovo_WM_21:-44:0.626
chr17	56595266	56595402	reg1000229.p1	6.989	+	AF264717 TSC_hg19_v1_chr17_-_56595226 BC035609 NM_004687	-91	-	TSC_hg19_v1_chr17_-_56591953 AK308877	-3392	-	BC115385 BC115386 BC033017 BC033020 NM_001080439 TSC_hg19_v1_chr17_-_56565791	-29585	-	CR457111 D89278 AK091065 AX746762 AB002110 AF073312 U88829 BC128255 BC128515 AB008753 AK315045 BC142968 TSC_hg19_v1_chr17_-_56606678	11273	-	AK314528 TSC_hg19_v1_chr17_-_56606712 NM_004574	11409	-	BC018055 TSC_hg19_v1_chr17_-_56609363	14028	-	AF264717|MTMR4|9110|myotubularin related protein 4##BC035609|MTMR4|9110|myotubularin related protein 4##NM_004687|MTMR4|9110|myotubularin related protein 4##AK308877|MTMR4|9110|myotubularin related protein 4##BC115385|HSF5|124535|heat shock transcription factor family member 5##BC115386|HSF5|124535|heat shock transcription factor family member 5##BC033017|HSF5|124535|heat shock transcription factor family member 5##BC033020|HSF5|124535|heat shock transcription factor family member 5##NM_001080439|HSF5|124535|heat shock transcription factor family member 5##CR457111|SEPT4|5414|septin 4##D89278|SEPT4|5414|septin 4##AK091065|SEPT4|5414|septin 4##AB002110|SEPT4|5414|septin 4##AF073312|SEPT4|5414|septin 4##U88829|SEPT4|5414|septin 4##BC128255|SEPT4|5414|septin 4##BC128515|SEPT4|5414|septin 4##AB008753|SEPT4|5414|septin 4##AK315045|SEPT4|5414|septin 4##BC142968|SEPT4|5414|septin 4##AK314528|SEPT4|5414|septin 4##NM_004574|SEPT4|5414|septin 4##BC018055|SEPT4|5414|septin 4	1.762519	denovo_WM_21:-12:0.241	denovo_WM_21:52:0.542
chr5	140079892	140080033	reg1000675.p2	6.987	+	TSC_hg19_v1_chr5_+_140071221 AK293269 CU675755 DQ892641 EU176716	-8730	+	TSC_hg19_v1_chr5_+_140071198 BC007680 AK293390 AK312976 AK298661	-8792	+	AK311277 AK309832 NM_012208 TSC_hg19_v1_chr5_+_140071042 BC014982 U18937	-8913	+	TSC_hg19_v1_chr5_+_140080031 AK055683 BC056668 NM_144723	65	+	AB384778 AF152305 AF152479 AF169695 NM_018900 NM_031410 NM_031411	85913	+	BC003126 NM_018905 NM_031495 AF152310 AF152480 CU678384	94534	+	AK293269|HARS2|23438|histidyl-tRNA synthetase 2, mitochondrial (putative)##DQ892641|HARS2|23438|histidyl-tRNA synthetase 2, mitochondrial (putative)##EU176716|HARS2|23438|histidyl-tRNA synthetase 2, mitochondrial (putative)##BC007680|HARS2|23438|histidyl-tRNA synthetase 2, mitochondrial (putative)##AK293390|HARS2|23438|histidyl-tRNA synthetase 2, mitochondrial (putative)##AK312976|HARS2|23438|histidyl-tRNA synthetase 2, mitochondrial (putative)##AK298661|HARS2|23438|histidyl-tRNA synthetase 2, mitochondrial (putative)##AK311277|HARS2|23438|histidyl-tRNA synthetase 2, mitochondrial (putative)##AK309832|HARS2|23438|histidyl-tRNA synthetase 2, mitochondrial (putative)##NM_012208|HARS2|23438|histidyl-tRNA synthetase 2, mitochondrial (putative)##BC014982|HARS2|23438|histidyl-tRNA synthetase 2, mitochondrial (putative)##U18937|HARS2|23438|histidyl-tRNA synthetase 2, mitochondrial (putative)##AK055683|ZMAT2|153527|zinc finger, matrin-type 2##BC056668|ZMAT2|153527|zinc finger, matrin-type 2##NM_144723|ZMAT2|153527|zinc finger, matrin-type 2##AF152305|PCDHA1|56147|protocadherin alpha 1##AF152479|PCDHA1|56147|protocadherin alpha 1##AF169695|PCDHA1|56147|protocadherin alpha 1##NM_018900|PCDHA1|56147|protocadherin alpha 1##NM_031410|PCDHA1|56147|protocadherin alpha 1##NM_031411|PCDHA1|56147|protocadherin alpha 1##BC003126|PCDHA2|56146|protocadherin alpha 2##NM_018905|PCDHA2|56146|protocadherin alpha 2##NM_031495|PCDHA2|56146|protocadherin alpha 2##AF152310|PCDHA2|56146|protocadherin alpha 2##AF152480|PCDHA2|56146|protocadherin alpha 2	0.0	
chr12	14956468	14956652	reg1000708.p1	6.978	+	TSC_hg19_v1_chr12_-_14956411 BX647347 AK297410 AK302244	-122	-	TSC_hg19_v1_chr12_-_14956403 AB029309 BC023532 BC001621 NM_016312	-175	-	AF118023 TSC_hg19_v1_chr12_-_14956333	-234	-	BC038836 NM_175874 AK289942 AK056213 BC015546 BC029443	16	+	BC132752 BC132754 AK092637 AX747644 NM_001013698	10543	-	AY829433 AY829434 NM_021071 AK291662 TSC_hg19_v1_chr12_-_14996461	39864	-	BX647347|WBP11|51729|WW domain binding protein 11##AK297410|WBP11|51729|WW domain binding protein 11##AK302244|WBP11|51729|WW domain binding protein 11##AB029309|WBP11|51729|WW domain binding protein 11##BC023532|WBP11|51729|WW domain binding protein 11##BC001621|WBP11|51729|WW domain binding protein 11##NM_016312|WBP11|51729|WW domain binding protein 11##AF118023|WBP11|51729|WW domain binding protein 11##BC038836|C12orf60|144608|chromosome 12 open reading frame 60##NM_175874|C12orf60|144608|chromosome 12 open reading frame 60##AK289942|C12orf60|144608|chromosome 12 open reading frame 60##AK056213|C12orf60|144608|chromosome 12 open reading frame 60##BC015546|C12orf60|144608|chromosome 12 open reading frame 60##BC029443|C12orf60|144608|chromosome 12 open reading frame 60##BC132752|C12orf69|440087|chromosome 12 open reading frame 69##BC132754|C12orf69|440087|chromosome 12 open reading frame 69##AK092637|C12orf69|440087|chromosome 12 open reading frame 69##NM_001013698|C12orf69|440087|chromosome 12 open reading frame 69##AY829433|ART4|420|ADP-ribosyltransferase 4 (Dombrock blood group)##AY829434|ART4|420|ADP-ribosyltransferase 4 (Dombrock blood group)##NM_021071|ART4|420|ADP-ribosyltransferase 4 (Dombrock blood group)##AK291662|ART4|420|ADP-ribosyltransferase 4 (Dombrock blood group)	0.0	
chr15	59397207	59397334	reg1000678.p1	6.978	+	TSC_hg19_v1_chr15_+_59359061 AK095327	-38192	+	BX647259 TSC_hg19_v1_chr15_+_59280332 AK131304	-116991	+	TSC_hg19_v1_chr15_+_59279864 BC060862 BX538130 NM_017610	-117413	+	TSC_hg19_v1_chr15_+_59397344 NM_004701 AK001404 AL080146 BC105086 BC105112 AF087910 AK222611 AB020981 AF002822 AB587333 AM393577 BT019458 CR533527	101	+	AY642121 BC022034 AY009108 NM_033195 AK312777 AK058192	101782	+	AB290177 TSC_hg19_v1_chr15_-_59665055	267784	-	AK095327|RNF111|54778|ring finger protein 111##BX647259|RNF111|54778|ring finger protein 111##AK131304|RNF111|54778|ring finger protein 111##BC060862|RNF111|54778|ring finger protein 111##BX538130|RNF111|54778|ring finger protein 111##NM_017610|RNF111|54778|ring finger protein 111##NM_004701|CCNB2|9133|cyclin B2##AK001404|CCNB2|9133|cyclin B2##AL080146|CCNB2|9133|cyclin B2##BC105086|CCNB2|9133|cyclin B2##BC105112|CCNB2|9133|cyclin B2##AF087910|CCNB2|9133|cyclin B2##AK222611|CCNB2|9133|cyclin B2##AB020981|CCNB2|9133|cyclin B2##AF002822|CCNB2|9133|cyclin B2##AM393577|CCNB2|9133|cyclin B2##BT019458|CCNB2|9133|cyclin B2##CR533527|CCNB2|9133|cyclin B2##AY642121|LDHAL6B|92483|lactate dehydrogenase A-like 6B##BC022034|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AY009108|LDHAL6B|92483|lactate dehydrogenase A-like 6B##NM_033195|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AK058192|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AB290177|MYO1E|4643|myosin IE	1.960451	denovo_WM_21:-8:0.972	denovo_WM_21:-41:0.988
chr19	21105963	21106072	reg1000735.p1	6.976	+	BC067843 TSC_hg19_v1_chr19_+_20959109	-146908	+	BC150651 AK096221 CR749233 TSC_hg19_v1_chr19_-_20844378 BC007116 BX648764 AK131567 BC107803 NM_001076675 NM_145297	-261655	-	BC015765 TSC_hg19_v1_chr19_-_20748588 NM_001159293	-357432	-	NM_003429 BC068066 TSC_hg19_v1_chr19_+_21106090 U35376 M61866 BC008688	69	+	AK290475 NM_001172671 NM_025189 TSC_hg19_v1_chr19_+_21203432 AK023721 AX721141 AY269787 BC111776	97464	+	NM_182515 AL834415 TSC_hg19_v1_chr19_+_21264973 AK056006 BC022527 BC037782 BC050468 BC064985	158986	+	AK096221|ZNF626|199777|zinc finger protein 626##CR749233|ZNF626|199777|zinc finger protein 626##BC007116|ZNF626|199777|zinc finger protein 626##BX648764|ZNF626|199777|zinc finger protein 626##BC107803|ZNF626|199777|zinc finger protein 626##NM_001076675|ZNF626|199777|zinc finger protein 626##NM_145297|ZNF626|199777|zinc finger protein 626##BC015765|ZNF737|100129842|zinc finger protein 737##NM_001159293|ZNF737|100129842|zinc finger protein 737##NM_003429|ZNF85|7639|zinc finger protein 85##BC068066|ZNF85|7639|zinc finger protein 85##U35376|ZNF85|7639|zinc finger protein 85##M61866|ZNF85|7639|zinc finger protein 85##BC008688|ZNF85|7639|zinc finger protein 85##AK290475|ZNF430|80264|zinc finger protein 430##NM_001172671|ZNF430|80264|zinc finger protein 430##NM_025189|ZNF430|80264|zinc finger protein 430##AK023721|ZNF430|80264|zinc finger protein 430##AY269787|ZNF430|80264|zinc finger protein 430##BC111776|ZNF430|80264|zinc finger protein 430##NM_182515|ZNF714|148206|zinc finger protein 714##AK056006|ZNF714|148206|zinc finger protein 714##BC022527|ZNF714|148206|zinc finger protein 714##BC037782|ZNF714|148206|zinc finger protein 714##BC050468|ZNF714|148206|zinc finger protein 714##BC064985|ZNF714|148206|zinc finger protein 714	1.683673	denovo_WM_21:-8:0.705	denovo_WM_21:-37:0.979
chr16	53537253	53537378	reg1000297.p1	6.969	+	TSC_hg19_v1_chr16_-_53537122 AK303503 BC001134 BC095401 AK222743 AK023320 NM_001012398 NM_022476	-175	-	TSC_hg19_v1_chr16_+_53479685 BX537767	-57627	+	TSC_hg19_v1_chr16_+_53469560 AK300047	-67769	+	TSC_hg19_v1_chr16_-_53737760 BC136433 AK096333 AK308390 BC017977 CR749645 AK307929 EF565106 NM_001127897 NM_015272 AK304790	200442	-	NM_001080432	200559	+	TSC_hg19_v1_chr16_+_53738067 AK096554 AB051539 AK295196	200753	+	AK303503|AKTIP|64400|AKT interacting protein##BC001134|AKTIP|64400|AKT interacting protein##BC095401|AKTIP|64400|AKT interacting protein##AK222743|AKTIP|64400|AKT interacting protein##AK023320|AKTIP|64400|AKT interacting protein##NM_001012398|AKTIP|64400|AKT interacting protein##NM_022476|AKTIP|64400|AKT interacting protein##BX537767|RBL2|5934|retinoblastoma-like 2 (p130)##AK300047|RBL2|5934|retinoblastoma-like 2 (p130)##BC136433|RPGRIP1L|23322|RPGRIP1-like##AK096333|RPGRIP1L|23322|RPGRIP1-like##AK308390|RPGRIP1L|23322|RPGRIP1-like##BC017977|RPGRIP1L|23322|RPGRIP1-like##CR749645|RPGRIP1L|23322|RPGRIP1-like##AK307929|RPGRIP1L|23322|RPGRIP1-like##EF565106|RPGRIP1L|23322|RPGRIP1-like##NM_001127897|RPGRIP1L|23322|RPGRIP1-like##NM_015272|RPGRIP1L|23322|RPGRIP1-like##AK304790|RPGRIP1L|23322|RPGRIP1-like##NM_001080432|FTO|79068|fat mass and obesity associated##AK096554|FTO|79068|fat mass and obesity associated##AB051539|FTO|79068|fat mass and obesity associated##AK295196|FTO|79068|fat mass and obesity associated	0.0	
chr7	77325597	77325706	reg1000610.p1	6.968	+	TSC_hg19_v1_chr7_-_77325573 BC037783	-90	-	AK303602 NM_001131008 NM_001131009 AK296764	-158283	+	TSC_hg19_v1_chr7_+_77166764 NM_002835 AB209524 AK314236 AK289573 M93425 D13380 AB384966	-158845	+	TSC_hg19_v1_chr7_+_77325775 NM_198467 BC059402 BC046353	106	+	BC012192 TSC_hg19_v1_chr7_-_77427680 BC065930	102017	-	TSC_hg19_v1_chr7_-_77427744 AF260336 NM_032936	102096	-	AK303602|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##NM_001131008|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##NM_001131009|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AK296764|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##NM_002835|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AB209524|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AK314236|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AK289573|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##M93425|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##D13380|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##NM_198467|RSBN1L|222194|round spermatid basic protein 1-like##BC059402|RSBN1L|222194|round spermatid basic protein 1-like##BC046353|RSBN1L|222194|round spermatid basic protein 1-like##BC012192|TMEM60|85025|transmembrane protein 60##BC065930|TMEM60|85025|transmembrane protein 60##AF260336|TMEM60|85025|transmembrane protein 60##NM_032936|TMEM60|85025|transmembrane protein 60	0.966036	denovo_WM_21:-18:0.966
chr17	44439146	44439273	reg1000632.p1	6.967	+	BC020869 AK289590 AK315857 BC041803 BC030570 BX647266 NM_001039083 NM_001103154 NM_001113738 NM_016632	-87	-	BC040501 CR749232 NM_014834	-66713	+	AK291259 NM_001193465	-136482	-	BC040501 CR749232 NM_001006607	150866	+	BC020869 AB209344 AF208864 BX647266 NM_001113738 NM_016632	217838	-	NM_006178 AF135168 AF102846 AK294001 AK294727 AK294886 AK299786 BC030613 AK226078 AK290204 AK316057 U03985	228868	+	BC020869|ARL17A|51326|ADP-ribosylation factor-like 17A##AK289590|ARL17A|51326|ADP-ribosylation factor-like 17A##AK315857|ARL17A|51326|ADP-ribosylation factor-like 17A##BC041803|ARL17A|51326|ADP-ribosylation factor-like 17A##BC030570|ARL17A|51326|ADP-ribosylation factor-like 17A##BX647266|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_001039083|ARL17B|100506084|ADP-ribosylation factor-like 17B##NM_001103154|ARL17B|100506084|ADP-ribosylation factor-like 17B##NM_001113738|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_016632|ARL17A|51326|ADP-ribosylation factor-like 17A##BC040501|LRRC37A|9884|leucine rich repeat containing 37A##CR749232|LRRC37A|9884|leucine rich repeat containing 37A##NM_014834|LRRC37A|9884|leucine rich repeat containing 37A##AK291259|KIAA1267|284058|KIAA1267##NM_001193465|KIAA1267|284058|KIAA1267##BC040501|LRRC37A|9884|leucine rich repeat containing 37A##CR749232|LRRC37A|9884|leucine rich repeat containing 37A##NM_001006607|LRRC37A2|474170|leucine rich repeat containing 37, member A2##BC020869|ARL17A|51326|ADP-ribosylation factor-like 17A##AB209344|ARL17A|51326|ADP-ribosylation factor-like 17A##AF208864|ARL17A|51326|ADP-ribosylation factor-like 17A##BX647266|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_001113738|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_016632|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_006178|NSF|4905|N-ethylmaleimide-sensitive factor##AF135168|NSF|4905|N-ethylmaleimide-sensitive factor##AF102846|NSF|4905|N-ethylmaleimide-sensitive factor##AK294001|NSF|4905|N-ethylmaleimide-sensitive factor##AK294727|NSF|4905|N-ethylmaleimide-sensitive factor##AK294886|NSF|4905|N-ethylmaleimide-sensitive factor##AK299786|NSF|4905|N-ethylmaleimide-sensitive factor##BC030613|NSF|4905|N-ethylmaleimide-sensitive factor##AK226078|NSF|4905|N-ethylmaleimide-sensitive factor##AK290204|NSF|4905|N-ethylmaleimide-sensitive factor##AK316057|NSF|4905|N-ethylmaleimide-sensitive factor##U03985|NSF|4905|N-ethylmaleimide-sensitive factor	0.097033	
chr19	21324688	21324828	reg1000647.p1	6.949	+	NM_182515 AL834415 TSC_hg19_v1_chr19_+_21264973 AK056006 BC022527 BC037782 BC050468 BC064985	-59755	+	AK290475 NM_001172671 NM_025189 TSC_hg19_v1_chr19_+_21203432 AK023721 AX721141 AY269787 BC111776	-121277	+	NM_003429 BC068066 TSC_hg19_v1_chr19_+_21106090 U35376 M61866 BC008688	-218672	+	BX647597 TSC_hg19_v1_chr19_+_21324836 AK308127 NM_133473 AK293072 AB075849 BC065374 BC040506	98	+	TSC_hg19_v1_chr19_-_21512183 AK128184 AK131527 NM_021269 AK095062 BX647526	187435	-	BC034499 TSC_hg19_v1_chr19_+_21541801 AK027579 AK291002 AK291193	217022	+	NM_182515|ZNF714|148206|zinc finger protein 714##AK056006|ZNF714|148206|zinc finger protein 714##BC022527|ZNF714|148206|zinc finger protein 714##BC037782|ZNF714|148206|zinc finger protein 714##BC050468|ZNF714|148206|zinc finger protein 714##BC064985|ZNF714|148206|zinc finger protein 714##AK290475|ZNF430|80264|zinc finger protein 430##NM_001172671|ZNF430|80264|zinc finger protein 430##NM_025189|ZNF430|80264|zinc finger protein 430##AK023721|ZNF430|80264|zinc finger protein 430##AY269787|ZNF430|80264|zinc finger protein 430##BC111776|ZNF430|80264|zinc finger protein 430##NM_003429|ZNF85|7639|zinc finger protein 85##BC068066|ZNF85|7639|zinc finger protein 85##U35376|ZNF85|7639|zinc finger protein 85##M61866|ZNF85|7639|zinc finger protein 85##BC008688|ZNF85|7639|zinc finger protein 85##BX647597|ZNF431|170959|zinc finger protein 431##AK308127|ZNF431|170959|zinc finger protein 431##NM_133473|ZNF431|170959|zinc finger protein 431##AK293072|ZNF431|170959|zinc finger protein 431##AB075849|ZNF431|170959|zinc finger protein 431##BC040506|ZNF431|170959|zinc finger protein 431##AK128184|ZNF708|7562|zinc finger protein 708##AK131527|ZNF708|7562|zinc finger protein 708##NM_021269|ZNF708|7562|zinc finger protein 708##BX647526|ZNF708|7562|zinc finger protein 708##BC034499|ZNF738|148203|zinc finger protein 738##AK027579|ZNF738|148203|zinc finger protein 738##AK291002|ZNF738|148203|zinc finger protein 738##AK291193|ZNF738|148203|zinc finger protein 738	0.900264	denovo_WM_21:2:0.890
chr19	46195755	46195921	reg1000541.p2	6.946	+	NM_001163377 NM_017659	-98	+	NM_004597 NM_177542	-396	-	BC000486 TSC_hg19_v1_chr19_-_46195193 U15008 AK291912	-642	-	TSC_hg19_v1_chr19_+_46195931 AK000091 AK172764 AK222636 BC011553 AB528634	90	+	TSC_hg19_v1_chr19_-_46220589 AK091414 AX746967	24775	-	TSC_hg19_v1_chr19_-_46234155 NM_001080469	38309	-	NM_001163377|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##NM_017659|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##NM_004597|SNRPD2|6633|small nuclear ribonucleoprotein D2 polypeptide 16.5kDa##NM_177542|SNRPD2|6633|small nuclear ribonucleoprotein D2 polypeptide 16.5kDa##BC000486|SNRPD2|6633|small nuclear ribonucleoprotein D2 polypeptide 16.5kDa##U15008|SNRPD2|6633|small nuclear ribonucleoprotein D2 polypeptide 16.5kDa##AK291912|SNRPD2|6633|small nuclear ribonucleoprotein D2 polypeptide 16.5kDa##AK000091|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##AK172764|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##AK222636|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##BC011553|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##NM_001080469|FBXO46|23403|F-box protein 46	1.828075	denovo_WM_21:-13:0.977	denovo_WM_21:39:0.851
chr19	21264864	21264995	reg1000673.p1	6.944	+	AK290475 NM_001172671 NM_025189 TSC_hg19_v1_chr19_+_21203432 AK023721 AX721141 AY269787 BC111776	-61448	+	NM_003429 BC068066 TSC_hg19_v1_chr19_+_21106090 U35376 M61866 BC008688	-158843	+	BC067843 TSC_hg19_v1_chr19_+_20959109	-305820	+	NM_182515 AL834415 TSC_hg19_v1_chr19_+_21264973 AK056006 BC022527 BC037782 BC050468 BC064985	74	+	BX647597 TSC_hg19_v1_chr19_+_21324836 AK308127 NM_133473 AK293072 AB075849 BC065374 BC040506	59927	+	TSC_hg19_v1_chr19_-_21512183 AK128184 AK131527 NM_021269 AK095062 BX647526	247264	-	AK290475|ZNF430|80264|zinc finger protein 430##NM_001172671|ZNF430|80264|zinc finger protein 430##NM_025189|ZNF430|80264|zinc finger protein 430##AK023721|ZNF430|80264|zinc finger protein 430##AY269787|ZNF430|80264|zinc finger protein 430##BC111776|ZNF430|80264|zinc finger protein 430##NM_003429|ZNF85|7639|zinc finger protein 85##BC068066|ZNF85|7639|zinc finger protein 85##U35376|ZNF85|7639|zinc finger protein 85##M61866|ZNF85|7639|zinc finger protein 85##BC008688|ZNF85|7639|zinc finger protein 85##NM_182515|ZNF714|148206|zinc finger protein 714##AK056006|ZNF714|148206|zinc finger protein 714##BC022527|ZNF714|148206|zinc finger protein 714##BC037782|ZNF714|148206|zinc finger protein 714##BC050468|ZNF714|148206|zinc finger protein 714##BC064985|ZNF714|148206|zinc finger protein 714##BX647597|ZNF431|170959|zinc finger protein 431##AK308127|ZNF431|170959|zinc finger protein 431##NM_133473|ZNF431|170959|zinc finger protein 431##AK293072|ZNF431|170959|zinc finger protein 431##AB075849|ZNF431|170959|zinc finger protein 431##BC040506|ZNF431|170959|zinc finger protein 431##AK128184|ZNF708|7562|zinc finger protein 708##AK131527|ZNF708|7562|zinc finger protein 708##NM_021269|ZNF708|7562|zinc finger protein 708##BX647526|ZNF708|7562|zinc finger protein 708	0.900264	denovo_WM_21:-3:0.890
chr17	17942615	17942733	reg1000514.p2	6.942	+	AM393241 CU678578 CU689282 AB528073 AF070584 BC032126 AF052185 AY203943 TSC_hg19_v1_chr17_-_17942481 BC004114 NM_145691 AK290257 AK294487 AK296382	-271	-	NM_001130090 NM_001130091 NM_001130092 NM_031294 TSC_hg19_v1_chr17_+_17876186 BC047873 AL136926 AK293011 BC040276 BC050419 BC050665 AK093317 AX748051	-66474	+	TSC_hg19_v1_chr17_-_17875715 AK124331 AK295111 AK301944 AK303305 AK299872 AF467441 BC051650 AK294846 NM_001033551 NM_001082968	-66933	-	TSC_hg19_v1_chr17_+_17942750 BC041829 NM_024052 AK315083 AK074284 AK127580 BC000636	133	+	TSC_hg19_v1_chr17_+_17991289 AK313362 BC062572 BC000493 NM_001388 AK297569 X80754 AK295575 DQ890768 DQ893929 BT006976	48594	+	AF144094 NM_016239	69345	+	AM393241|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AF070584|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##BC032126|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AF052185|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AY203943|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##BC004114|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##NM_145691|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AK290257|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AK294487|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##NM_001130090|LRRC48|83450|leucine rich repeat containing 48##NM_001130091|LRRC48|83450|leucine rich repeat containing 48##NM_001130092|LRRC48|83450|leucine rich repeat containing 48##NM_031294|LRRC48|83450|leucine rich repeat containing 48##BC047873|LRRC48|83450|leucine rich repeat containing 48##AL136926|LRRC48|83450|leucine rich repeat containing 48##AK293011|LRRC48|83450|leucine rich repeat containing 48##BC040276|LRRC48|83450|leucine rich repeat containing 48##BC050419|LRRC48|83450|leucine rich repeat containing 48##BC050665|LRRC48|83450|leucine rich repeat containing 48##AK093317|LRRC48|83450|leucine rich repeat containing 48##AK124331|TOM1L2|146691|target of myb1-like 2 (chicken)##AK295111|TOM1L2|146691|target of myb1-like 2 (chicken)##AK301944|TOM1L2|146691|target of myb1-like 2 (chicken)##AK303305|TOM1L2|146691|target of myb1-like 2 (chicken)##AK299872|TOM1L2|146691|target of myb1-like 2 (chicken)##AF467441|TOM1L2|146691|target of myb1-like 2 (chicken)##BC051650|TOM1L2|146691|target of myb1-like 2 (chicken)##AK294846|TOM1L2|146691|target of myb1-like 2 (chicken)##NM_001033551|TOM1L2|146691|target of myb1-like 2 (chicken)##NM_001082968|TOM1L2|146691|target of myb1-like 2 (chicken)##BC041829|C17orf39|79018|chromosome 17 open reading frame 39##NM_024052|C17orf39|79018|chromosome 17 open reading frame 39##AK315083|C17orf39|79018|chromosome 17 open reading frame 39##AK074284|C17orf39|79018|chromosome 17 open reading frame 39##AK127580|C17orf39|79018|chromosome 17 open reading frame 39##BC000636|C17orf39|79018|chromosome 17 open reading frame 39##AK313362|DRG2|1819|developmentally regulated GTP binding protein 2##BC062572|DRG2|1819|developmentally regulated GTP binding protein 2##BC000493|DRG2|1819|developmentally regulated GTP binding protein 2##NM_001388|DRG2|1819|developmentally regulated GTP binding protein 2##AK297569|DRG2|1819|developmentally regulated GTP binding protein 2##X80754|DRG2|1819|developmentally regulated GTP binding protein 2##AK295575|DRG2|1819|developmentally regulated GTP binding protein 2##DQ890768|DRG2|1819|developmentally regulated GTP binding protein 2##DQ893929|DRG2|1819|developmentally regulated GTP binding protein 2##BT006976|DRG2|1819|developmentally regulated GTP binding protein 2##AF144094|MYO15A|51168|myosin XVA##NM_016239|MYO15A|51168|myosin XVA	1.096679	denovo_WM_21:31:0.983
chr15	49103241	49103426	reg1000362.p1	6.935	+	BC117182 TSC_hg19_v1_chr15_-_49103277 AB020719 BC069186 AK303805 BX648822 BC107721 NM_001194998 NM_014985	-71	-	TSC_hg19_v1_chr15_-_48937907 BC146854 AK304737 BC094721 NM_000138 X63556	-165404	-	TSC_hg19_v1_chr15_-_48937070 L13923	-166250	-	TSC_hg19_v1_chr15_+_49170330 NM_014335 BC114944 BC114946 AK315365 AF092135 AF109873 AF349444 AK098383 AL109701 BC024151 AL357456 BC007944 AB527924 AF274951	67039	+	BC033907 NM_203349	152307	-	CU689588 AB385300 TSC_hg19_v1_chr15_-_49338644 D87445 AK307480 AK308183 BC008635 BC033001 NM_001193489 NM_014701	235303	-	BC117182|CEP152|22995|centrosomal protein 152kDa##AB020719|CEP152|22995|centrosomal protein 152kDa##BC069186|CEP152|22995|centrosomal protein 152kDa##AK303805|CEP152|22995|centrosomal protein 152kDa##BX648822|CEP152|22995|centrosomal protein 152kDa##BC107721|CEP152|22995|centrosomal protein 152kDa##NM_001194998|CEP152|22995|centrosomal protein 152kDa##NM_014985|CEP152|22995|centrosomal protein 152kDa##BC146854|FBN1|2200|fibrillin 1##AK304737|FBN1|2200|fibrillin 1##BC094721|FBN1|2200|fibrillin 1##NM_000138|FBN1|2200|fibrillin 1##X63556|FBN1|2200|fibrillin 1##L13923|FBN1|2200|fibrillin 1##NM_014335|EID1|23741|EP300 interacting inhibitor of differentiation 1##BC114944|EID1|23741|EP300 interacting inhibitor of differentiation 1##BC114946|EID1|23741|EP300 interacting inhibitor of differentiation 1##AK315365|EID1|23741|EP300 interacting inhibitor of differentiation 1##AF092135|EID1|23741|EP300 interacting inhibitor of differentiation 1##AF109873|EID1|23741|EP300 interacting inhibitor of differentiation 1##AF349444|EID1|23741|EP300 interacting inhibitor of differentiation 1##AK098383|EID1|23741|EP300 interacting inhibitor of differentiation 1##AL109701|EID1|23741|EP300 interacting inhibitor of differentiation 1##BC024151|EID1|23741|EP300 interacting inhibitor of differentiation 1##AL357456|EID1|23741|EP300 interacting inhibitor of differentiation 1##BC007944|EID1|23741|EP300 interacting inhibitor of differentiation 1##BC033907|SHC4|399694|SHC (Src homology 2 domain containing) family, member 4##NM_203349|SHC4|399694|SHC (Src homology 2 domain containing) family, member 4##D87445|SECISBP2L|9728|SECIS binding protein 2-like##AK307480|SECISBP2L|9728|SECIS binding protein 2-like##AK308183|SECISBP2L|9728|SECIS binding protein 2-like##BC008635|SECISBP2L|9728|SECIS binding protein 2-like##BC033001|SECISBP2L|9728|SECIS binding protein 2-like##NM_001193489|SECISBP2L|9728|SECIS binding protein 2-like##NM_014701|SECISBP2L|9728|SECIS binding protein 2-like	0.0	
chr3	8543382	8543520	reg1000641.p1	6.925	+	TSC_hg19_v1_chr3_-_8543333 AK124088 BC020876	-121	-	TSC_hg19_v1_chr3_+_6902816 X94552 BC136458 BC136459	-1640553	+	TSC_hg19_v1_chr3_+_6902801 AK312488 NM_000844 NM_181874	-1640652	+	AK300803 TSC_hg19_v1_chr3_+_8543509 AK022176 NM_014583 AF169284 BC000646	64	+	TSC_hg19_v1_chr3_+_8543540 AK294455 AK293849 AF216709 DQ891747 DQ894926	130	+	TSC_hg19_v1_chr3_-_8693765 AB024705 NM_015931 BC052614	150303	-	AK124088|LOC100288428|100288428|uncharacterized LOC100288428##X94552|GRM7|2917|glutamate receptor, metabotropic 7##BC136458|GRM7|2917|glutamate receptor, metabotropic 7##BC136459|GRM7|2917|glutamate receptor, metabotropic 7##AK312488|GRM7|2917|glutamate receptor, metabotropic 7##NM_000844|GRM7|2917|glutamate receptor, metabotropic 7##NM_181874|GRM7|2917|glutamate receptor, metabotropic 7##AK300803|LMCD1|29995|LIM and cysteine-rich domains 1##AK022176|LMCD1|29995|LIM and cysteine-rich domains 1##NM_014583|LMCD1|29995|LIM and cysteine-rich domains 1##AF169284|LMCD1|29995|LIM and cysteine-rich domains 1##BC000646|LMCD1|29995|LIM and cysteine-rich domains 1##AK294455|LMCD1|29995|LIM and cysteine-rich domains 1##AK293849|LMCD1|29995|LIM and cysteine-rich domains 1##AF216709|LMCD1|29995|LIM and cysteine-rich domains 1##DQ891747|LMCD1|29995|LIM and cysteine-rich domains 1##DQ894926|LMCD1|29995|LIM and cysteine-rich domains 1##AB024705|C3orf32|51066|chromosome 3 open reading frame 32##NM_015931|C3orf32|51066|chromosome 3 open reading frame 32##BC052614|C3orf32|51066|chromosome 3 open reading frame 32	0.222308	denovo_WM_21:-39:0.222
chr2	10262717	10262842	reg1000615.p1	6.923	+	NM_001165931 S40301 X59618 TSC_hg19_v1_chr2_+_10262805	-20	+	TSC_hg19_v1_chr2_-_10220367 AB590068 AF544983 NM_001037160	-42350	-	AK091299 TSC_hg19_v1_chr2_-_10220297	-42543	-	TSC_hg19_v1_chr2_+_10262865 NM_001034 AK092671 AK123010 AK313719 BC030154 BC001886 DQ891863 DQ895052 AB529158	110	+	BC093999 BC094001 NM_182626	19200	+	TSC_hg19_v1_chr2_+_10443043 BC017482 NM_002149 BC009846 BC017028	180270	+	NM_001165931|RRM2|6241|ribonucleotide reductase M2##S40301|RRM2|6241|ribonucleotide reductase M2##X59618|RRM2|6241|ribonucleotide reductase M2##AF544983|CYS1|192668|cystin 1##NM_001037160|CYS1|192668|cystin 1##AK091299|CYS1|192668|cystin 1##NM_001034|RRM2|6241|ribonucleotide reductase M2##AK092671|RRM2|6241|ribonucleotide reductase M2##AK123010|RRM2|6241|ribonucleotide reductase M2##AK313719|RRM2|6241|ribonucleotide reductase M2##BC030154|RRM2|6241|ribonucleotide reductase M2##BC001886|RRM2|6241|ribonucleotide reductase M2##DQ891863|RRM2|6241|ribonucleotide reductase M2##DQ895052|RRM2|6241|ribonucleotide reductase M2##BC093999|C2orf48|348738|chromosome 2 open reading frame 48##BC094001|C2orf48|348738|chromosome 2 open reading frame 48##NM_182626|C2orf48|348738|chromosome 2 open reading frame 48##BC017482|HPCAL1|3241|hippocalcin-like 1##NM_002149|HPCAL1|3241|hippocalcin-like 1##BC009846|HPCAL1|3241|hippocalcin-like 1##BC017028|HPCAL1|3241|hippocalcin-like 1	2.902119	denovo_WM_21:-2:0.967	denovo_WM_21:24:0.967	denovo_WM_21:-32:0.967
chr4	1283504	1283630	reg1000684.p1	6.914	+	TSC_hg19_v1_chr4_+_1243060 AK125775 AK056133	-40399	+	TSC_hg19_v1_chr4_-_1242910 BC072021 BC053320 NM_001012614 NM_001328 BC098400	-40659	-	AB527760 DQ891918 DQ895102 TSC_hg19_v1_chr4_-_1242878 AF091555 BC011655 U37408	-40757	-	TSC_hg19_v1_chr4_+_1283678 BC001225 NM_001017405 NM_005882 AK001088 AK022586 AK094253 AK300572	103	+	TSC_hg19_v1_chr4_+_1283693 AK296174 AK022515 AY236486 AK308901 AF084928 BC006470 AY189687 BT006957	139	+	TSC_hg19_v1_chr4_+_1341031 BC110331 AB040963 NM_020894 BC140901	57701	+	AK125775|C4orf42|92070|chromosome 4 open reading frame 42##AK056133|C4orf42|92070|chromosome 4 open reading frame 42##BC072021|CTBP1|1487|C-terminal binding protein 1##BC053320|CTBP1|1487|C-terminal binding protein 1##NM_001012614|CTBP1|1487|C-terminal binding protein 1##NM_001328|CTBP1|1487|C-terminal binding protein 1##BC098400|CTBP1|1487|C-terminal binding protein 1##DQ891918|CTBP1|1487|C-terminal binding protein 1##DQ895102|CTBP1|1487|C-terminal binding protein 1##AF091555|CTBP1|1487|C-terminal binding protein 1##BC011655|CTBP1|1487|C-terminal binding protein 1##U37408|CTBP1|1487|C-terminal binding protein 1##BC001225|MAEA|10296|macrophage erythroblast attacher##NM_001017405|MAEA|10296|macrophage erythroblast attacher##NM_005882|MAEA|10296|macrophage erythroblast attacher##AK001088|MAEA|10296|macrophage erythroblast attacher##AK022586|MAEA|10296|macrophage erythroblast attacher##AK094253|MAEA|10296|macrophage erythroblast attacher##AK300572|MAEA|10296|macrophage erythroblast attacher##AK296174|MAEA|10296|macrophage erythroblast attacher##AK022515|MAEA|10296|macrophage erythroblast attacher##AY236486|MAEA|10296|macrophage erythroblast attacher##AK308901|MAEA|10296|macrophage erythroblast attacher##AF084928|MAEA|10296|macrophage erythroblast attacher##BC006470|MAEA|10296|macrophage erythroblast attacher##AY189687|MAEA|10296|macrophage erythroblast attacher##BT006957|MAEA|10296|macrophage erythroblast attacher##BC110331|KIAA1530|57654|KIAA1530##AB040963|KIAA1530|57654|KIAA1530##NM_020894|KIAA1530|57654|KIAA1530##BC140901|KIAA1530|57654|KIAA1530	1.195166	denovo_WM_21:-25:0.364	denovo_WM_21:-55:0.831
chr2	9771127	9771309	reg1000578.p1	6.909	+	TSC_hg19_v1_chr2_-_9771102 NM_006826 X56468 BC056867 AK297624 BC001197 AK302208 BC093019 AK309462	-93	-	TSC_hg19_v1_chr2_-_9771100 X57347 AK316158	-169	-	AF070556 TSC_hg19_v1_chr2_-_9770668 BT020014 CU691168 AM393330 AM393338 AM393358 AM393674 AB464331 BC050601	-605	-	NM_005680 BC018137 TSC_hg19_v1_chr2_+_9983599 AK309751 AK308070 AK315098 AK295402 AK026521 AB527836 DQ894659	212402	+	NM_198182 TSC_hg19_v1_chr2_+_10091799 AK293855 AK296982 AK312950 BC063299 BC098456 AF198489 BC067519 BC067520 BC067521	320632	+	TSC_hg19_v1_chr2_+_10183698 BC063286 NM_003597 AK315345 AF272830 AK289816 BC069383 BC074922 AF028008 AJ275989 AK316439 NM_001177716	412574	+	NM_006826|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##X56468|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC056867|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK297624|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC001197|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK302208|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC093019|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK309462|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##X57347|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK316158|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AF070556|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BT020014|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393330|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393338|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393358|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393674|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC050601|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##NM_005680|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##BC018137|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK309751|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK308070|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK315098|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK295402|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK026521|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##DQ894659|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##NM_198182|GRHL1|29841|grainyhead-like 1 (Drosophila)##AK293855|GRHL1|29841|grainyhead-like 1 (Drosophila)##AK296982|GRHL1|29841|grainyhead-like 1 (Drosophila)##AK312950|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC063299|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC098456|GRHL1|29841|grainyhead-like 1 (Drosophila)##AF198489|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC067519|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC067520|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC067521|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC063286|KLF11|8462|Kruppel-like factor 11##NM_003597|KLF11|8462|Kruppel-like factor 11##AK315345|KLF11|8462|Kruppel-like factor 11##AF272830|KLF11|8462|Kruppel-like factor 11##AK289816|KLF11|8462|Kruppel-like factor 11##BC069383|KLF11|8462|Kruppel-like factor 11##BC074922|KLF11|8462|Kruppel-like factor 11##AF028008|KLF11|8462|Kruppel-like factor 11##AJ275989|KLF11|8462|Kruppel-like factor 11##AK316439|KLF11|8462|Kruppel-like factor 11##NM_001177716|KLF11|8462|Kruppel-like factor 11	0.809029	denovo_WM_21:18:0.809
chr5	89705590	89705680	reg1000486.p1	6.907	+	BT006688 CR450346 Y12473 BC093793 BC112040 TSC_hg19_v1_chr5_-_89705574 BC005383 NM_004365	-96	-	AL833268 AL833274 NM_001131005 NM_001193347	-1505741	-	TSC_hg19_v1_chr5_+_88185266 AK093634	-1520371	+	CU691546 AK289778 AK096942 TSC_hg19_v1_chr5_-_89770234 AK128603	64547	-	TSC_hg19_v1_chr5_-_89770480 BC038230 NM_203406	64943	-	NM_006467 AK295434 U93868	65067	+	BT006688|CETN3|1070|centrin, EF-hand protein, 3##CR450346|CETN3|1070|centrin, EF-hand protein, 3##Y12473|CETN3|1070|centrin, EF-hand protein, 3##BC093793|CETN3|1070|centrin, EF-hand protein, 3##BC112040|CETN3|1070|centrin, EF-hand protein, 3##BC005383|CETN3|1070|centrin, EF-hand protein, 3##NM_004365|CETN3|1070|centrin, EF-hand protein, 3##AL833268|MEF2C|4208|myocyte enhancer factor 2C##AL833274|MEF2C|4208|myocyte enhancer factor 2C##NM_001131005|MEF2C|4208|myocyte enhancer factor 2C##NM_001193347|MEF2C|4208|myocyte enhancer factor 2C##AK093634|RPS6|6194|ribosomal protein S6##AK289778|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK096942|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK128603|MBLAC2|153364|metallo-beta-lactamase domain containing 2##BC038230|MBLAC2|153364|metallo-beta-lactamase domain containing 2##NM_203406|MBLAC2|153364|metallo-beta-lactamase domain containing 2##NM_006467|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##AK295434|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##U93868|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)	0.045281	
chr15	45571416	45571562	reg1000626.p1	6.899	+	AK222709 NM_004212 U84392 AK291974	-27048	+	AK096267 NM_138356	-78117	-	TSC_hg19_v1_chr15_-_45480165 AK094391 AK303749	-91325	-	TSC_hg19_v1_chr15_-_45670743 CU678590 S68805 BC004141 AK098055 AK223585 AK294995 AK298350	99250	-	TSC_hg19_v1_chr15_-_45670958 NM_001482	99478	-	NM_024063 TSC_hg19_v1_chr15_+_45694551 AK291457 AK023232 AK225463 BC051861 BC000981 AK022348	123063	+	AK222709|SLC28A2|9153|solute carrier family 28 (sodium-coupled nucleoside transporter), member 2##NM_004212|SLC28A2|9153|solute carrier family 28 (sodium-coupled nucleoside transporter), member 2##U84392|SLC28A2|9153|solute carrier family 28 (sodium-coupled nucleoside transporter), member 2##AK291974|SLC28A2|9153|solute carrier family 28 (sodium-coupled nucleoside transporter), member 2##AK096267|SHF|90525|Src homology 2 domain containing F##NM_138356|SHF|90525|Src homology 2 domain containing F##AK094391|SHF|90525|Src homology 2 domain containing F##AK303749|SHF|90525|Src homology 2 domain containing F##S68805|GATM|2628|glycine amidinotransferase (L-arginine:glycine amidinotransferase)##BC004141|GATM|2628|glycine amidinotransferase (L-arginine:glycine amidinotransferase)##AK098055|GATM|2628|glycine amidinotransferase (L-arginine:glycine amidinotransferase)##AK223585|GATM|2628|glycine amidinotransferase (L-arginine:glycine amidinotransferase)##AK294995|GATM|2628|glycine amidinotransferase (L-arginine:glycine amidinotransferase)##AK298350|GATM|2628|glycine amidinotransferase (L-arginine:glycine amidinotransferase)##NM_001482|GATM|2628|glycine amidinotransferase (L-arginine:glycine amidinotransferase)##NM_024063|SPATA5L1|79029|spermatogenesis associated 5-like 1##AK291457|SPATA5L1|79029|spermatogenesis associated 5-like 1##AK023232|SPATA5L1|79029|spermatogenesis associated 5-like 1##AK225463|SPATA5L1|79029|spermatogenesis associated 5-like 1##BC051861|SPATA5L1|79029|spermatogenesis associated 5-like 1##BC000981|SPATA5L1|79029|spermatogenesis associated 5-like 1##AK022348|SPATA5L1|79029|spermatogenesis associated 5-like 1	0.0	
chr6	15245969	15246083	reg1000300.p1	6.894	+	TSC_hg19_v1_chr6_+_15245702 AK302624	-309	+	AK223315 AK290426 TSC_hg19_v1_chr6_+_14118002 AK307059 AK309541 DQ892356 DQ895563 Z11697 CU689036 BT019498 CR457019	-1128004	+	TSC_hg19_v1_chr6_+_14117869 NM_001040280 NM_004233 BC030830 BC004351	-1128121	+	TSC_hg19_v1_chr6_+_15246300 AK292861 BC046246 NM_004973 U57592	386	+	BC033996 TSC_hg19_v1_chr6_-_15248900	2875	-	TSC_hg19_v1_chr6_+_15249113 AK303610	3087	+	AK302624|JARID2|3720|jumonji, AT rich interactive domain 2##AK223315|CD83|9308|CD83 molecule##AK290426|CD83|9308|CD83 molecule##AK307059|CD83|9308|CD83 molecule##AK309541|CD83|9308|CD83 molecule##DQ892356|CD83|9308|CD83 molecule##DQ895563|CD83|9308|CD83 molecule##Z11697|CD83|9308|CD83 molecule##BT019498|CD83|9308|CD83 molecule##CR457019|CD83|9308|CD83 molecule##NM_001040280|CD83|9308|CD83 molecule##NM_004233|CD83|9308|CD83 molecule##BC030830|CD83|9308|CD83 molecule##BC004351|CD83|9308|CD83 molecule##AK292861|JARID2|3720|jumonji, AT rich interactive domain 2##BC046246|JARID2|3720|jumonji, AT rich interactive domain 2##NM_004973|JARID2|3720|jumonji, AT rich interactive domain 2##U57592|JARID2|3720|jumonji, AT rich interactive domain 2##AK303610|JARID2|3720|jumonji, AT rich interactive domain 2	0.0	
chr7	100183818	100184002	reg1000011.p1	6.878	+	TSC_hg19_v1_chr7_-_100183753 BC018529 NM_002319	-135	-	AB528535 DQ893565 DQ894240 TSC_hg19_v1_chr7_-_100183751 AK074833 AK302410	-173	-	NM_001168682	-12641	-	TSC_hg19_v1_chr7_+_100183929 AK292240 NM_033506 BC032497 AK310487 AL136811 BC067293 BC051745	92	+	AK302252 NM_001163499 NM_012172 AK301864	3313	+	NM_002593 TSC_hg19_v1_chr7_+_100199985 AK313748 BC000574 L33799 AB008549 AK298364 BC033205 DQ891923 DQ895108	16069	+	BC018529|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##NM_002319|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##DQ893565|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##DQ894240|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##AK074833|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##AK302410|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##NM_001168682|SAP25|100316904|Sin3A-associated protein, 25kDa##AK292240|FBXO24|26261|F-box protein 24##NM_033506|FBXO24|26261|F-box protein 24##BC032497|FBXO24|26261|F-box protein 24##AK310487|FBXO24|26261|F-box protein 24##AL136811|FBXO24|26261|F-box protein 24##BC067293|FBXO24|26261|F-box protein 24##BC051745|FBXO24|26261|F-box protein 24##AK302252|FBXO24|26261|F-box protein 24##NM_001163499|FBXO24|26261|F-box protein 24##NM_012172|FBXO24|26261|F-box protein 24##AK301864|FBXO24|26261|F-box protein 24##NM_002593|PCOLCE|5118|procollagen C-endopeptidase enhancer##AK313748|PCOLCE|5118|procollagen C-endopeptidase enhancer##BC000574|PCOLCE|5118|procollagen C-endopeptidase enhancer##L33799|PCOLCE|5118|procollagen C-endopeptidase enhancer##AB008549|PCOLCE|5118|procollagen C-endopeptidase enhancer##AK298364|PCOLCE|5118|procollagen C-endopeptidase enhancer##BC033205|PCOLCE|5118|procollagen C-endopeptidase enhancer##DQ891923|PCOLCE|5118|procollagen C-endopeptidase enhancer##DQ895108|PCOLCE|5118|procollagen C-endopeptidase enhancer	1.092452	denovo_WM_21:-27:0.986
chr10	104677906	104678043	reg1000508.p2	6.871	+	NM_020682 AK057833 AK225972 AF226730 AK309737 BC119637 BC119638	-48717	+	NM_001136200 NM_144591 AL832477 TSC_hg19_v1_chr10_+_104614015 AK098071 BC015994 BC040069 AK311742	-63973	+	AK308466 BT020000 CU687686 BC062997 BC063388 BC032843 M14564 TSC_hg19_v1_chr10_-_104597171 AK289898 AK094106 AK312235 NM_000102	-80790	-	TSC_hg19_v1_chr10_+_104678078 BC021222 AK023479 NM_017649 NM_199076 NM_199077	83	+	BX648078 TSC_hg19_v1_chr10_-_104953030 BC001595 AK127670 AK291667 AK312517 D38524 NM_001134373 NM_012229	275073	-	BC157875 BC171885 NM_001143909 BC137242 BC137243 BC157829 BC171806	327699	+	NM_020682|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AK057833|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AK225972|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AF226730|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AK309737|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##BC119637|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##BC119638|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##NM_001136200|C10orf32|119032|chromosome 10 open reading frame 32##NM_144591|C10orf32|119032|chromosome 10 open reading frame 32##AL832477|C10orf32|119032|chromosome 10 open reading frame 32##AK098071|C10orf32|119032|chromosome 10 open reading frame 32##BC015994|C10orf32|119032|chromosome 10 open reading frame 32##BC040069|C10orf32-AS3MT|100528007|C10orf32-AS3MT readthrough##AK311742|C10orf32|119032|chromosome 10 open reading frame 32##AK308466|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##BT020000|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##BC062997|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##BC063388|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##BC032843|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##M14564|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##AK289898|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##AK094106|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##AK312235|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##NM_000102|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##BC021222|CNNM2|54805|cyclin M2##AK023479|CNNM2|54805|cyclin M2##NM_017649|CNNM2|54805|cyclin M2##NM_199076|CNNM2|54805|cyclin M2##NM_199077|CNNM2|54805|cyclin M2##BX648078|NT5C2|22978|5'-nucleotidase, cytosolic II##BC001595|NT5C2|22978|5'-nucleotidase, cytosolic II##AK127670|NT5C2|22978|5'-nucleotidase, cytosolic II##AK291667|NT5C2|22978|5'-nucleotidase, cytosolic II##AK312517|NT5C2|22978|5'-nucleotidase, cytosolic II##D38524|NT5C2|22978|5'-nucleotidase, cytosolic II##NM_001134373|NT5C2|22978|5'-nucleotidase, cytosolic II##NM_012229|NT5C2|22978|5'-nucleotidase, cytosolic II##BC157875|LOC729020|729020|rcRPE##BC171885|LOC729020|729020|rcRPE##NM_001143909|LOC729020|729020|rcRPE##BC137242|LOC729020|729020|rcRPE##BC137243|LOC729020|729020|rcRPE##BC157829|LOC729020|729020|rcRPE##BC171806|LOC729020|729020|rcRPE	1.481483	denovo_WM_21:31:0.945	denovo_WM_21:-42:0.537
chr9	5339409	5339548	reg1000742.p2	6.868	+	HQ258745 NM_005059 NM_134441 X00948 BC126415 BC126419	-34884	-	BC026254 AK291543 L34838 NM_002195 CU693182	-108016	+	AF135824 HQ258002 AF156094 NM_007179 BC126473 BC126475	-153865	-	X00949 DQ893302 DQ896468 BC005956 NM_006911	330	-	TSC_hg19_v1_chr9_-_5437869 BC008212 AF220050 AK312736 AK027594 AF225420 NM_018465	98402	-	TSC_hg19_v1_chr9_+_5450455 NM_014143 DQ836393 AK300470 AK314567 AF233516 BC069381	111029	+	HQ258745|RLN2|6019|relaxin 2##NM_005059|RLN2|6019|relaxin 2##NM_134441|RLN2|6019|relaxin 2##X00948|RLN2|6019|relaxin 2##BC126415|RLN2|6019|relaxin 2##BC126419|RLN2|6019|relaxin 2##BC026254|INSL4|3641|insulin-like 4 (placenta)##AK291543|INSL4|3641|insulin-like 4 (placenta)##L34838|INSL4|3641|insulin-like 4 (placenta)##NM_002195|INSL4|3641|insulin-like 4 (placenta)##AF135824|INSL6|11172|insulin-like 6##HQ258002|INSL6|11172|insulin-like 6##AF156094|INSL6|11172|insulin-like 6##NM_007179|INSL6|11172|insulin-like 6##BC126473|INSL6|11172|insulin-like 6##BC126475|INSL6|11172|insulin-like 6##X00949|RLN1|6013|relaxin 1##DQ893302|RLN1|6013|relaxin 1##DQ896468|RLN1|6013|relaxin 1##BC005956|RLN1|6013|relaxin 1##NM_006911|RLN1|6013|relaxin 1##BC008212|C9orf46|55848|chromosome 9 open reading frame 46##AF220050|C9orf46|55848|chromosome 9 open reading frame 46##AK312736|C9orf46|55848|chromosome 9 open reading frame 46##AK027594|C9orf46|55848|chromosome 9 open reading frame 46##AF225420|C9orf46|55848|chromosome 9 open reading frame 46##NM_018465|C9orf46|55848|chromosome 9 open reading frame 46##NM_014143|CD274|29126|CD274 molecule##DQ836393|CD274|29126|CD274 molecule##AK300470|CD274|29126|CD274 molecule##AK314567|CD274|29126|CD274 molecule##AF233516|CD274|29126|CD274 molecule##BC069381|CD274|29126|CD274 molecule	1.819294	denovo_WM_21:16:0.949	denovo_WM_21:-46:0.870
chr9	96928998	96929126	reg1000451.p3	6.868	+	TSC_hg19_v1_chr9_+_96846806 AK124912	-82248	+	NM_001253829 NM_152422 TSC_hg19_v1_chr9_+_96846745 BC031279 AK310403 AK289692	-82311	+	TSC_hg19_v1_chr9_+_96793094 AY171233 NM_177995 BC067120 NM_001253830 BC051654	-135947	+	TSC_hg19_v1_chr9_+_97021599 NM_194320 AK289742 AK093956	92528	+	HQ258506 BC130390 BC143798 NM_017561	161852	-	TSC_hg19_v1_chr9_+_97136850 NM_032558	207771	+	AK124912|PTPDC1|138639|protein tyrosine phosphatase domain containing 1##NM_001253829|PTPDC1|138639|protein tyrosine phosphatase domain containing 1##NM_152422|PTPDC1|138639|protein tyrosine phosphatase domain containing 1##BC031279|PTPDC1|138639|protein tyrosine phosphatase domain containing 1##AK310403|PTPDC1|138639|protein tyrosine phosphatase domain containing 1##AK289692|PTPDC1|138639|protein tyrosine phosphatase domain containing 1##AY171233|PTPDC1|138639|protein tyrosine phosphatase domain containing 1##NM_177995|PTPDC1|138639|protein tyrosine phosphatase domain containing 1##BC067120|PTPDC1|138639|protein tyrosine phosphatase domain containing 1##NM_001253830|PTPDC1|138639|protein tyrosine phosphatase domain containing 1##BC051654|PTPDC1|138639|protein tyrosine phosphatase domain containing 1##NM_194320|ZNF169|169841|zinc finger protein 169##AK289742|ZNF169|169841|zinc finger protein 169##AK093956|ZNF169|169841|zinc finger protein 169##HQ258506|FAM22F|54754|family with sequence similarity 22, member F##BC130390|FAM22F|54754|family with sequence similarity 22, member F##BC143798|FAM22F|54754|family with sequence similarity 22, member F##NM_017561|FAM22F|54754|family with sequence similarity 22, member F##NM_032558|HIATL1|84641|hippocampus abundant transcript-like 1	0.027795	
chr19	48836224	48836381	reg1000732.p1	6.863	+	TSC_hg19_v1_chr19_+_48828847 BC009718 U52101	-7468	+	TSC_hg19_v1_chr19_+_48828629 NM_001425 U87947	-7662	+	TSC_hg19_v1_chr19_-_48825152 AK128144	-11132	-	TSC_hg19_v1_chr19_-_48867198 BC004363 BC040021 AY358161 BC016919 NM_018273 AK001784 AK291521 AK294408 AK297591 AK297610 AK298317 AK129801 AK303635	30967	-	NM_012451 BC106891	31407	+	CU676330 DQ891992 DQ895182 TSC_hg19_v1_chr19_-_48894672	58342	-	BC009718|EMP3|2014|epithelial membrane protein 3##U52101|EMP3|2014|epithelial membrane protein 3##NM_001425|EMP3|2014|epithelial membrane protein 3##U87947|EMP3|2014|epithelial membrane protein 3##AK128144|CCDC114|93233|coiled-coil domain containing 114##BC040021|TMEM143|55260|transmembrane protein 143##AY358161|TMEM143|55260|transmembrane protein 143##BC016919|TMEM143|55260|transmembrane protein 143##NM_018273|TMEM143|55260|transmembrane protein 143##AK291521|TMEM143|55260|transmembrane protein 143##AK294408|TMEM143|55260|transmembrane protein 143##AK297591|TMEM143|55260|transmembrane protein 143##AK297610|TMEM143|55260|transmembrane protein 143##AK298317|TMEM143|55260|transmembrane protein 143##AK129801|TMEM143|55260|transmembrane protein 143##AK303635|TMEM143|55260|transmembrane protein 143##NM_012451|SYNGR4|23546|synaptogyrin 4##BC106891|SYNGR4|23546|synaptogyrin 4##DQ891992|KDELR1|10945|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1##DQ895182|KDELR1|10945|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	1.932072	denovo_WM_21:15:0.966	denovo_WM_21:-37:0.966
chr11	117198446	117198559	reg1000664.p1	6.850	+	TSC_hg19_v1_chr11_-_117186973 AF324837 AB032975 AF201468 AF190725 BC036084 AK075049 BC065492 NM_012104 NM_138971 NM_138972 NM_138973	-11522	-	TSC_hg19_v1_chr11_-_117186364 AF200193 AB089958 AF200343 AF204943 AF338816 AF338817 CU688052 AB590539 AB050436 AB050437 AB050438 DQ891509 DQ894700	-12063	-	AB177847 AK296015 AK296535 NM_001207048 NM_001207049	-32186	-	TSC_hg19_v1_chr11_+_117198594 BX648682 NM_014956 BC054015	82	+	AK302991 BC000602 TSC_hg19_v1_chr11_+_117198865 AK303067	329	+	AB385430 AF304304 AF304305 TSC_hg19_v1_chr11_-_117667909 AF334384 AB032958	469351	-	AF324837|BACE1|23621|beta-site APP-cleaving enzyme 1##AB032975|BACE1|23621|beta-site APP-cleaving enzyme 1##AF201468|BACE1|23621|beta-site APP-cleaving enzyme 1##AF190725|BACE1|23621|beta-site APP-cleaving enzyme 1##BC036084|BACE1|23621|beta-site APP-cleaving enzyme 1##AK075049|BACE1|23621|beta-site APP-cleaving enzyme 1##BC065492|BACE1|23621|beta-site APP-cleaving enzyme 1##NM_012104|BACE1|23621|beta-site APP-cleaving enzyme 1##NM_138971|BACE1|23621|beta-site APP-cleaving enzyme 1##NM_138972|BACE1|23621|beta-site APP-cleaving enzyme 1##NM_138973|BACE1|23621|beta-site APP-cleaving enzyme 1##AF200193|BACE1|23621|beta-site APP-cleaving enzyme 1##AB089958|BACE1|23621|beta-site APP-cleaving enzyme 1##AF200343|BACE1|23621|beta-site APP-cleaving enzyme 1##AF204943|BACE1|23621|beta-site APP-cleaving enzyme 1##AF338816|BACE1|23621|beta-site APP-cleaving enzyme 1##AF338817|BACE1|23621|beta-site APP-cleaving enzyme 1##AB050436|BACE1|23621|beta-site APP-cleaving enzyme 1##AB050437|BACE1|23621|beta-site APP-cleaving enzyme 1##AB050438|BACE1|23621|beta-site APP-cleaving enzyme 1##DQ891509|BACE1|23621|beta-site APP-cleaving enzyme 1##DQ894700|BACE1|23621|beta-site APP-cleaving enzyme 1##AB177847|BACE1|23621|beta-site APP-cleaving enzyme 1##AK296015|BACE1|23621|beta-site APP-cleaving enzyme 1##AK296535|BACE1|23621|beta-site APP-cleaving enzyme 1##NM_001207048|BACE1|23621|beta-site APP-cleaving enzyme 1##NM_001207049|BACE1|23621|beta-site APP-cleaving enzyme 1##BX648682|CEP164|22897|centrosomal protein 164kDa##NM_014956|CEP164|22897|centrosomal protein 164kDa##BC054015|CEP164|22897|centrosomal protein 164kDa##AK302991|CEP164|22897|centrosomal protein 164kDa##BC000602|CEP164|22897|centrosomal protein 164kDa##AK303067|CEP164|22897|centrosomal protein 164kDa##AF304304|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##AF304305|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##AF334384|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##AB032958|DSCAML1|57453|Down syndrome cell adhesion molecule like 1	0.0	
chr4	2470704	2470843	reg1000812.p1	6.848	+	TSC_hg19_v1_chr4_+_2420681 AK126028 NM_001193282	-50076	+	TSC_hg19_v1_chr4_-_2420373 BC137309 BC137310 BC053664 AB046863 BC032605 NM_001172656 NM_001172657 NM_001172658 NM_020972 AK294710	-50369	-	BC035793 AK294874 TSC_hg19_v1_chr4_-_2366542 AK316484 NM_001172659 NM_001172660	-104207	-	TSC_hg19_v1_chr4_+_2470826 NM_001185010 NM_002938	29	+	TSC_hg19_v1_chr4_+_2470835 AK307372	62	+	TSC_hg19_v1_chr4_+_2470845 AB000468	71	+	NM_001193282|LOC402160|402160|uncharacterized LOC402160##BC137309|ZFYVE28|57732|zinc finger, FYVE domain containing 28##BC137310|ZFYVE28|57732|zinc finger, FYVE domain containing 28##BC053664|ZFYVE28|57732|zinc finger, FYVE domain containing 28##AB046863|ZFYVE28|57732|zinc finger, FYVE domain containing 28##BC032605|ZFYVE28|57732|zinc finger, FYVE domain containing 28##NM_001172656|ZFYVE28|57732|zinc finger, FYVE domain containing 28##NM_001172657|ZFYVE28|57732|zinc finger, FYVE domain containing 28##NM_001172658|ZFYVE28|57732|zinc finger, FYVE domain containing 28##NM_020972|ZFYVE28|57732|zinc finger, FYVE domain containing 28##AK294710|ZFYVE28|57732|zinc finger, FYVE domain containing 28##BC035793|ZFYVE28|57732|zinc finger, FYVE domain containing 28##AK294874|ZFYVE28|57732|zinc finger, FYVE domain containing 28##AK316484|ZFYVE28|57732|zinc finger, FYVE domain containing 28##NM_001172659|ZFYVE28|57732|zinc finger, FYVE domain containing 28##NM_001172660|ZFYVE28|57732|zinc finger, FYVE domain containing 28##NM_001185010|RNF4|6047|ring finger protein 4##NM_002938|RNF4|6047|ring finger protein 4##AK307372|RNF4|6047|ring finger protein 4##AB000468|RNF4|6047|ring finger protein 4	1.072196	denovo_WM_21:23:0.641	denovo_WM_21:-37:0.431
chr2	55746586	55746731	reg1000583.p1	6.844	+	TSC_hg19_v1_chr2_-_55646993 BC014905 BC041160 BC142646 BC142700 AK025723 NM_001135597 NM_018084	-99654	-	TSC_hg19_v1_chr2_-_55559749 BC056885	-186872	-	BC082973 TSC_hg19_v1_chr2_-_55496365 AK225184 BC054048 AF494407 AK307993 NM_002453	-250293	-	TSC_hg19_v1_chr2_+_55746786 AY358097 NM_080667 AK309764 AK308776 BC010011 CU679569 DQ893082 DQ896343	168	+	TSC_hg19_v1_chr2_-_55844739 AB037808 BC006215 BC060855 AK296481 AK056036 NM_001122964 NM_020463 BC032531	98136	-	TSC_hg19_v1_chr2_-_55844909 BC045714	98253	-	BC014905|CCDC88A|55704|coiled-coil domain containing 88A##BC041160|CCDC88A|55704|coiled-coil domain containing 88A##BC142646|CCDC88A|55704|coiled-coil domain containing 88A##BC142700|CCDC88A|55704|coiled-coil domain containing 88A##AK025723|CCDC88A|55704|coiled-coil domain containing 88A##NM_001135597|CCDC88A|55704|coiled-coil domain containing 88A##NM_018084|CCDC88A|55704|coiled-coil domain containing 88A##BC056885|CCDC88A|55704|coiled-coil domain containing 88A##BC082973|MTIF2|4528|mitochondrial translational initiation factor 2##AK225184|MTIF2|4528|mitochondrial translational initiation factor 2##BC054048|MTIF2|4528|mitochondrial translational initiation factor 2##AF494407|MTIF2|4528|mitochondrial translational initiation factor 2##AK307993|MTIF2|4528|mitochondrial translational initiation factor 2##NM_002453|MTIF2|4528|mitochondrial translational initiation factor 2##AY358097|CCDC104|112942|coiled-coil domain containing 104##NM_080667|CCDC104|112942|coiled-coil domain containing 104##AK309764|CCDC104|112942|coiled-coil domain containing 104##AK308776|CCDC104|112942|coiled-coil domain containing 104##BC010011|CCDC104|112942|coiled-coil domain containing 104##DQ893082|CCDC104|112942|coiled-coil domain containing 104##DQ896343|CCDC104|112942|coiled-coil domain containing 104##AB037808|SMEK2|57223|SMEK homolog 2, suppressor of mek1 (Dictyostelium)##BC006215|SMEK2|57223|SMEK homolog 2, suppressor of mek1 (Dictyostelium)##BC060855|SMEK2|57223|SMEK homolog 2, suppressor of mek1 (Dictyostelium)##AK296481|SMEK2|57223|SMEK homolog 2, suppressor of mek1 (Dictyostelium)##AK056036|SMEK2|57223|SMEK homolog 2, suppressor of mek1 (Dictyostelium)##NM_001122964|SMEK2|57223|SMEK homolog 2, suppressor of mek1 (Dictyostelium)##NM_020463|SMEK2|57223|SMEK homolog 2, suppressor of mek1 (Dictyostelium)##BC032531|SMEK2|57223|SMEK homolog 2, suppressor of mek1 (Dictyostelium)##BC045714|SMEK2|57223|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	1.123142	denovo_WM_21:10:0.989
chr19	16222567	16222691	reg1000469.p1	6.839	+	TSC_hg19_v1_chr19_+_16222683 BC002977	-13	+	TSC_hg19_v1_chr19_+_16222463 AK025165 NM_005370	-155	+	TSC_hg19_v1_chr19_+_16187330 X05276 BC002827 AK315076 AF310722 AF186109 BT019634	-35245	+	AK293676 TSC_hg19_v1_chr19_+_16222706 X56741 AF498943 BT007184 CR536583 CR542274 DQ892523 DQ895735 AB209767	93	+	TSC_hg19_v1_chr19_-_16243033 AY927516	20433	-	AY319652 NM_032855	22208	+	BC002977|RAB8A|4218|RAB8A, member RAS oncogene family##AK025165|RAB8A|4218|RAB8A, member RAS oncogene family##NM_005370|RAB8A|4218|RAB8A, member RAS oncogene family##X05276|TPM4|7171|tropomyosin 4##BC002827|TPM4|7171|tropomyosin 4##AK315076|TPM4|7171|tropomyosin 4##AF186109|TPM4|7171|tropomyosin 4##BT019634|TPM4|7171|tropomyosin 4##AK293676|RAB8A|4218|RAB8A, member RAS oncogene family##X56741|RAB8A|4218|RAB8A, member RAS oncogene family##AF498943|RAB8A|4218|RAB8A, member RAS oncogene family##BT007184|RAB8A|4218|RAB8A, member RAS oncogene family##CR536583|RAB8A|4218|RAB8A, member RAS oncogene family##CR542274|RAB8A|4218|RAB8A, member RAS oncogene family##DQ892523|RAB8A|4218|RAB8A, member RAS oncogene family##DQ895735|RAB8A|4218|RAB8A, member RAS oncogene family##AB209767|RAB8A|4218|RAB8A, member RAS oncogene family##AY319652|HSH2D|84941|hematopoietic SH2 domain containing##NM_032855|HSH2D|84941|hematopoietic SH2 domain containing	0.902686	denovo_WM_21:-3:0.903
chrX	63425647	63425801	reg1000762.p2	6.838	+	EF186024 TSC_hg19_v1_chrX_-_63425589 AK097146 NM_152424	-148	-	TSC_hg19_v1_chrX_-_63005273 AL832116 NM_001173479 AK295033	-420400	-	TSC_hg19_v1_chrX_-_62975005 BC105301 NM_001173480 NM_015185	-450707	-	AK096896 AK300684 NM_130388	24774	-	CU680314 TSC_hg19_v1_chrX_-_63615324 BC012399	189560	-	AK298847 NM_017677 TSC_hg19_v1_chrX_-_63615334	189619	-	EF186024|FAM123B|139285|family with sequence similarity 123B##AK097146|FAM123B|139285|family with sequence similarity 123B##NM_152424|FAM123B|139285|family with sequence similarity 123B##AL832116|ARHGEF9|23229|Cdc42 guanine nucleotide exchange factor (GEF) 9##NM_001173479|ARHGEF9|23229|Cdc42 guanine nucleotide exchange factor (GEF) 9##AK295033|ARHGEF9|23229|Cdc42 guanine nucleotide exchange factor (GEF) 9##NM_001173480|ARHGEF9|23229|Cdc42 guanine nucleotide exchange factor (GEF) 9##NM_015185|ARHGEF9|23229|Cdc42 guanine nucleotide exchange factor (GEF) 9##AK096896|ASB12|142689|ankyrin repeat and SOCS box containing 12##AK300684|ASB12|142689|ankyrin repeat and SOCS box containing 12##NM_130388|ASB12|142689|ankyrin repeat and SOCS box containing 12##BC012399|MTMR8|55613|myotubularin related protein 8##NM_017677|MTMR8|55613|myotubularin related protein 8	0.047927	
chr3	52091328	52091513	reg1000714.p1	6.829	+	X93921 TSC_hg19_v1_chr3_-_52090192 BC019107 AF508727 BC104880 BC104882 NM_001947	-1145	-	BC008926 NM_000992 TSC_hg19_v1_chr3_-_52029968	-61457	-	TSC_hg19_v1_chr3_-_52029912 BC070190 AK289538 AK311884 D28412	-61507	-	TSC_hg19_v1_chr3_-_52188413 BC119692 AK075289 BC119693 AK315688	97010	-	BC110877 NM_001161580 NM_001161581 NM_015426	97285	-	TSC_hg19_v1_chr3_+_52232145 NM_199166 AK312566 NM_000688 AK300993 AB063322 AY260745	140697	+	X93921|DUSP7|1849|dual specificity phosphatase 7##BC019107|DUSP7|1849|dual specificity phosphatase 7##AF508727|DUSP7|1849|dual specificity phosphatase 7##BC104880|DUSP7|1849|dual specificity phosphatase 7##BC104882|DUSP7|1849|dual specificity phosphatase 7##NM_001947|DUSP7|1849|dual specificity phosphatase 7##BC008926|RPL29|6159|ribosomal protein L29##NM_000992|RPL29|6159|ribosomal protein L29##BC070190|RPL29|6159|ribosomal protein L29##AK289538|RPL29|6159|ribosomal protein L29##AK311884|RPL29|6159|ribosomal protein L29##D28412|RPL29|6159|ribosomal protein L29##BC119692|POC1A|25886|POC1 centriolar protein homolog A (Chlamydomonas)##AK075289|POC1A|25886|POC1 centriolar protein homolog A (Chlamydomonas)##BC119693|POC1A|25886|POC1 centriolar protein homolog A (Chlamydomonas)##AK315688|POC1A|25886|POC1 centriolar protein homolog A (Chlamydomonas)##BC110877|POC1A|25886|POC1 centriolar protein homolog A (Chlamydomonas)##NM_001161580|POC1A|25886|POC1 centriolar protein homolog A (Chlamydomonas)##NM_001161581|POC1A|25886|POC1 centriolar protein homolog A (Chlamydomonas)##NM_015426|POC1A|25886|POC1 centriolar protein homolog A (Chlamydomonas)##NM_199166|ALAS1|211|aminolevulinate, delta-, synthase 1##AK312566|ALAS1|211|aminolevulinate, delta-, synthase 1##NM_000688|ALAS1|211|aminolevulinate, delta-, synthase 1##AK300993|ALAS1|211|aminolevulinate, delta-, synthase 1##AB063322|ALAS1|211|aminolevulinate, delta-, synthase 1##AY260745|ALAS1|211|aminolevulinate, delta-, synthase 1	0.112479	
chr19	12848076	12848260	reg1000290.p2	6.811	+	TSC_hg19_v1_chr19_-_12845557 BC040846	-2620	-	TSC_hg19_v1_chr19_-_12845516 BC000216 NM_024038 BC001840	-2646	-	TSC_hg19_v1_chr19_-_12845497 BC015347 AK315754 AK027588	-2680	-	TSC_hg19_v1_chr19_+_12848310 NM_004317 AK223363 AK291855 AK293588 AF047469 BC002651 CU678092 U60276	156	+	AF440756 AY515705 NM_017682 AK000139 AK225232	15270	+	CU680326 DQ891339 DQ893360 DQ894521 DQ896679 AB527820 TSC_hg19_v1_chr19_-_12886342 AF044924 BC012443	38159	-	BC040846|C19orf43|79002|chromosome 19 open reading frame 43##BC000216|C19orf43|79002|chromosome 19 open reading frame 43##NM_024038|C19orf43|79002|chromosome 19 open reading frame 43##BC015347|C19orf43|79002|chromosome 19 open reading frame 43##AK315754|C19orf43|79002|chromosome 19 open reading frame 43##AK027588|C19orf43|79002|chromosome 19 open reading frame 43##NM_004317|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##AK223363|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##AK291855|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##AK293588|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##AF047469|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##BC002651|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##U60276|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##AF440756|BEST2|54831|bestrophin 2##AY515705|BEST2|54831|bestrophin 2##NM_017682|BEST2|54831|bestrophin 2##AK000139|BEST2|54831|bestrophin 2##AK225232|BEST2|54831|bestrophin 2##DQ891339|HOOK2|29911|hook homolog 2 (Drosophila)##DQ893360|HOOK2|29911|hook homolog 2 (Drosophila)##DQ894521|HOOK2|29911|hook homolog 2 (Drosophila)##DQ896679|HOOK2|29911|hook homolog 2 (Drosophila)##AF044924|HOOK2|29911|hook homolog 2 (Drosophila)##BC012443|HOOK2|29911|hook homolog 2 (Drosophila)	0.013893	
chr19	50372760	50372930	reg1000495.p1	6.809	+	AF120499 BC033822 TSC_hg19_v1_chr19_-_50370821 NM_007254	-2023	-	TSC_hg19_v1_chr19_-_50354936 BC043359	-17908	-	TSC_hg19_v1_chr19_+_50354438 AJ617480 BC042921 U79287	-18315	+	TSC_hg19_v1_chr19_-_50379904 AK316603	7049	-	BC016043 BC007416 AK226004 BC051844 TSC_hg19_v1_chr19_-_50380601 BC015562 NM_032375 AK123687 NM_001098633 NM_001098632	7702	-	NM_001168222 NM_024682 TSC_hg19_v1_chr19_+_50380945 BC003516 AK022230 AK300007 AK309412 AB449903 AB590884 CU678472	8004	+	AF120499|PNKP|11284|polynucleotide kinase 3'-phosphatase##BC033822|PNKP|11284|polynucleotide kinase 3'-phosphatase##NM_007254|PNKP|11284|polynucleotide kinase 3'-phosphatase##BC043359|LOC100506033|100506033|uncharacterized LOC100506033##AJ617480|PTOV1|53635|prostate tumor overexpressed 1##BC042921|PTOV1|53635|prostate tumor overexpressed 1##U79287|PTOV1|53635|prostate tumor overexpressed 1##AK316603|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##BC016043|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##BC007416|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##AK226004|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##BC051844|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##BC015562|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##NM_032375|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##AK123687|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##NM_001098633|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##NM_001098632|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##NM_001168222|TBC1D17|79735|TBC1 domain family, member 17##NM_024682|TBC1D17|79735|TBC1 domain family, member 17##BC003516|TBC1D17|79735|TBC1 domain family, member 17##AK022230|TBC1D17|79735|TBC1 domain family, member 17##AK300007|TBC1D17|79735|TBC1 domain family, member 17##AK309412|TBC1D17|79735|TBC1 domain family, member 17##AB449903|TBC1D17|79735|TBC1 domain family, member 17	0.960426	denovo_WM_21:-50:0.960
chr17	74261069	74261203	reg1000534.p1	6.802	+	AK091467 AX747002 AB067504 NM_052916 TSC_hg19_v1_chr17_-_74236615	-24688	-	BC046460 NM_001454	-123762	-	TSC_hg19_v1_chr17_-_74099869 BX647763 NM_001013839 NM_001145297 NM_001145298 NM_001145299 NM_015219	-161271	-	TSC_hg19_v1_chr17_+_74261282 BC060859 NM_182565	148	+	TSC_hg19_v1_chr17_+_74261431 BC035511 EU176314	371	+	EU832276 EU832361 BC131559 AL136774 NM_032134	42534	-	AK091467|RNF157|114804|ring finger protein 157##AB067504|RNF157|114804|ring finger protein 157##NM_052916|RNF157|114804|ring finger protein 157##BC046460|FOXJ1|2302|forkhead box J1##NM_001454|FOXJ1|2302|forkhead box J1##BX647763|EXOC7|23265|exocyst complex component 7##NM_001013839|EXOC7|23265|exocyst complex component 7##NM_001145297|EXOC7|23265|exocyst complex component 7##NM_001145298|EXOC7|23265|exocyst complex component 7##NM_001145299|EXOC7|23265|exocyst complex component 7##NM_015219|EXOC7|23265|exocyst complex component 7##BC060859|FAM100B|283991|family with sequence similarity 100, member B##NM_182565|FAM100B|283991|family with sequence similarity 100, member B##BC035511|FAM100B|283991|family with sequence similarity 100, member B##EU176314|FAM100B|283991|family with sequence similarity 100, member B##EU832276|QRICH2|84074|glutamine rich 2##EU832361|QRICH2|84074|glutamine rich 2##BC131559|QRICH2|84074|glutamine rich 2##AL136774|QRICH2|84074|glutamine rich 2##NM_032134|QRICH2|84074|glutamine rich 2	2.024474	denovo_WM_21:-16:0.988	denovo_WM_21:-71:0.923
chr7	61515226	61515338	reg1000638.p1	6.802	+	AK131575 NM_001159279	-4005400	+	AF277624 NM_033273	-4307712	-	Y10275 TSC_hg19_v1_chr7_-_56184079 BC043523 NM_001145712	-5331239	-	NM_001159522	1990538	+	NM_001159524	2152298	+	BC033523 NM_153363	2173569	+	AK131575|ZNF716|441234|zinc finger protein 716##NM_001159279|ZNF716|441234|zinc finger protein 716##AF277624|ZNF479|90827|zinc finger protein 479##NM_033273|ZNF479|90827|zinc finger protein 479##BC043523|LOC389493|389493|uncharacterized protein LOC389493##NM_001145712|LOC389493|389493|uncharacterized protein LOC389493##NM_001159522|ZNF727|442319|zinc finger protein 727##NM_001159524|ZNF735|730291|zinc finger protein 735##BC033523|ZNF679|168417|zinc finger protein 679##NM_153363|ZNF679|168417|zinc finger protein 679	0.0	
chr19	39421431	39421554	reg1000619.p1	6.801	+	NM_033362	-145	+	TSC_hg19_v1_chr19_-_39421404 AB527892 CU692126 BC042912 AK296152 AK293414 AK000457 AK296170 AB029948 NM_001145901 NM_017827	-185	-	NM_001243212 TSC_hg19_v1_chr19_-_39402827	-18680	-	TSC_hg19_v1_chr19_+_39421608 NM_021107 NM_033363 Y11681 BC007499 BC001617	111	+	AK057934 NM_148169	21834	-	BC012385 AF386743 NM_024907	44842	-	NM_033362|MRPS12|6183|mitochondrial ribosomal protein S12##BC042912|SARS2|54938|seryl-tRNA synthetase 2, mitochondrial##AK296152|SARS2|54938|seryl-tRNA synthetase 2, mitochondrial##AK293414|SARS2|54938|seryl-tRNA synthetase 2, mitochondrial##AK000457|SARS2|54938|seryl-tRNA synthetase 2, mitochondrial##AK296170|SARS2|54938|seryl-tRNA synthetase 2, mitochondrial##AB029948|SARS2|54938|seryl-tRNA synthetase 2, mitochondrial##NM_001145901|SARS2|54938|seryl-tRNA synthetase 2, mitochondrial##NM_017827|SARS2|54938|seryl-tRNA synthetase 2, mitochondrial##NM_001243212|LOC643669|643669|uncharacterized LOC643669##NM_021107|MRPS12|6183|mitochondrial ribosomal protein S12##NM_033363|MRPS12|6183|mitochondrial ribosomal protein S12##Y11681|MRPS12|6183|mitochondrial ribosomal protein S12##BC007499|MRPS12|6183|mitochondrial ribosomal protein S12##BC001617|MRPS12|6183|mitochondrial ribosomal protein S12##AK057934|FBXO17|115290|F-box protein 17##NM_148169|FBXO17|115290|F-box protein 17##BC012385|FBXO17|115290|F-box protein 17##AF386743|FBXO17|115290|F-box protein 17##NM_024907|FBXO17|115290|F-box protein 17	1.002021	denovo_WM_21:-27:0.929
chr11	9482473	9482580	reg1000268.p2	6.787	+	BC004388 TSC_hg19_v1_chr11_-_9482148 BC036621	-398	-	AK312885 TSC_hg19_v1_chr11_+_9406199 AF098799 BC114929	-76306	+	TSC_hg19_v1_chr11_+_9406165 NM_006391	-76374	+	NM_003442 BC020219 AK313330 TSC_hg19_v1_chr11_+_9482560 AK291133 AK297214 BC014458	17	+	TSC_hg19_v1_chr11_+_9595216 NM_003390 U10564 BC070052	112687	+	X62048 TSC_hg19_v1_chr11_+_9595313	112799	+	BC004388|LOC644656|644656|uncharacterized LOC644656##BC036621|LOC644656|644656|uncharacterized LOC644656##AK312885|IPO7|10527|importin 7##AF098799|IPO7|10527|importin 7##BC114929|IPO7|10527|importin 7##NM_006391|IPO7|10527|importin 7##NM_003442|ZNF143|7702|zinc finger protein 143##BC020219|ZNF143|7702|zinc finger protein 143##AK313330|ZNF143|7702|zinc finger protein 143##AK291133|ZNF143|7702|zinc finger protein 143##AK297214|ZNF143|7702|zinc finger protein 143##BC014458|ZNF143|7702|zinc finger protein 143##NM_003390|WEE1|7465|WEE1 homolog (S. pombe)##U10564|WEE1|7465|WEE1 homolog (S. pombe)##BC070052|WEE1|7465|WEE1 homolog (S. pombe)##X62048|WEE1|7465|WEE1 homolog (S. pombe)	0.734954	denovo_WM_21:-68:0.723
chr21	15399627	15399746	reg1000608.p1	6.780	+	AY172978 NM_174981 AY465173	-417187	+	BC101132 BC101133 BC101134 BC107038 BC107039 BC113810 AF218570 AF339514 AF339515 AF339516 NM_181704 NM_182481 NM_182482 NM_182484 AF527550 AF527551 AF527553 NM_001187 U19180 BC017024 TSC_hg19_v1_chr21_-_11098961 AK292540 BC064647	-4300787	-	AK308254 AK314285 TSC_hg19_v1_chr21_-_10990898 AF007118 AF495908 AY219886 AY219887 AY219888 AL833345 BC028719 NM_199259 NM_199260 NM_199261	-4408788	-	TSC_hg19_v1_chr21_+_15399763 BC070147 BC024173 BC048201	78	+	AB463838 AY197607 NM_198996	179562	-	NM_144770 AK091331 AX746917 AF519623 BC030196 CU688832 AY077695	188811	+	AY172978|POTED|317754|POTE ankyrin domain family, member D##NM_174981|POTED|317754|POTE ankyrin domain family, member D##AY465173|POTEB|339010|POTE ankyrin domain family, member B##BC101132|BAGE2|85319|B melanoma antigen family, member 2##BC101133|BAGE2|85319|B melanoma antigen family, member 2##BC101134|BAGE3|85318|B melanoma antigen family, member 3##BC107038|BAGE|574|B melanoma antigen##BC107039|BAGE|574|B melanoma antigen##BC113810|BAGE|574|B melanoma antigen##AF218570|BAGE2|85319|B melanoma antigen family, member 2##AF339514|BAGE3|85318|B melanoma antigen family, member 3##AF339515|BAGE4|85317|B melanoma antigen family, member 4##AF339516|BAGE5|85316|B melanoma antigen family, member 5##NM_181704|BAGE4|85317|B melanoma antigen family, member 4##NM_182481|BAGE3|85318|B melanoma antigen family, member 3##NM_182482|BAGE2|85319|B melanoma antigen family, member 2##NM_182484|BAGE5|85316|B melanoma antigen family, member 5##AF527550|BAGE|574|B melanoma antigen##AF527551|BAGE|574|B melanoma antigen##AF527553|BAGE|574|B melanoma antigen##NM_001187|BAGE|574|B melanoma antigen##U19180|BAGE|574|B melanoma antigen##AK292540|BAGE2|85319|B melanoma antigen family, member 2##AK308254|TPTE|7179|transmembrane phosphatase with tensin homology##AK314285|TPTE|7179|transmembrane phosphatase with tensin homology##AF007118|TPTE|7179|transmembrane phosphatase with tensin homology##AF495908|TPTE|7179|transmembrane phosphatase with tensin homology##AY219886|TPTE|7179|transmembrane phosphatase with tensin homology##AY219887|TPTE|7179|transmembrane phosphatase with tensin homology##AY219888|TPTE|7179|transmembrane phosphatase with tensin homology##AL833345|TPTE|7179|transmembrane phosphatase with tensin homology##BC028719|TPTE|7179|transmembrane phosphatase with tensin homology##NM_199259|TPTE|7179|transmembrane phosphatase with tensin homology##NM_199260|TPTE|7179|transmembrane phosphatase with tensin homology##NM_199261|TPTE|7179|transmembrane phosphatase with tensin homology##AY197607|LIPI|149998|lipase, member I##NM_198996|LIPI|149998|lipase, member I##NM_144770|RBM11|54033|RNA binding motif protein 11##AK091331|RBM11|54033|RNA binding motif protein 11##AF519623|RBM11|54033|RNA binding motif protein 11##BC030196|RBM11|54033|RNA binding motif protein 11##AY077695|RBM11|54033|RNA binding motif protein 11	0.858649	denovo_WM_21:-9:0.848
chrX	154444564	154444686	reg1000617.p1	6.780	+	TSC_hg19_v1_chrX_+_154299784 AK310286 X64643 AK299194 AK313544 BC002999 BC006540 AB462964 AM392829 AY438030 CU678330 AK298886	-144835	+	TSC_hg19_v1_chrX_+_154299709 NM_001018055 NM_001242640 NM_024332	-144918	+	TSC_hg19_v1_chrX_-_154299405 BC002600 X64644 NM_001018024 NM_001018025	-145178	-	NM_003372 TSC_hg19_v1_chrX_+_154444736 BC009570 AK313420 BC046094 Y17394 BC040002 AB464347 BT019604 CU692296	104	+	AL834460 TSC_hg19_v1_chrX_-_154493774 AY052478 NM_171998 BC009714	49179	-	AB463493 AM393055 AY191592 DQ892014 DQ895204 BC022305 BC005367 AK292785 Y12696 NM_001289	119235	-	AK310286|BRCC3|79184|BRCA1/BRCA2-containing complex, subunit 3##X64643|BRCC3|79184|BRCA1/BRCA2-containing complex, subunit 3##AK299194|BRCC3|79184|BRCA1/BRCA2-containing complex, subunit 3##AK313544|BRCC3|79184|BRCA1/BRCA2-containing complex, subunit 3##BC002999|BRCC3|79184|BRCA1/BRCA2-containing complex, subunit 3##BC006540|BRCC3|79184|BRCA1/BRCA2-containing complex, subunit 3##AM392829|BRCC3|79184|BRCA1/BRCA2-containing complex, subunit 3##AY438030|BRCC3|79184|BRCA1/BRCA2-containing complex, subunit 3##AK298886|BRCC3|79184|BRCA1/BRCA2-containing complex, subunit 3##NM_001018055|BRCC3|79184|BRCA1/BRCA2-containing complex, subunit 3##NM_001242640|BRCC3|79184|BRCA1/BRCA2-containing complex, subunit 3##NM_024332|BRCC3|79184|BRCA1/BRCA2-containing complex, subunit 3##BC002600|MTCP1NB|100272147|mature T-cell proliferation 1 neighbor##X64644|MTCP1NB|100272147|mature T-cell proliferation 1 neighbor##NM_001018024|MTCP1NB|100272147|mature T-cell proliferation 1 neighbor##NM_001018025|MTCP1|4515|mature T-cell proliferation 1##NM_003372|VBP1|7411|von Hippel-Lindau binding protein 1##BC009570|VBP1|7411|von Hippel-Lindau binding protein 1##AK313420|VBP1|7411|von Hippel-Lindau binding protein 1##BC046094|VBP1|7411|von Hippel-Lindau binding protein 1##Y17394|VBP1|7411|von Hippel-Lindau binding protein 1##BC040002|VBP1|7411|von Hippel-Lindau binding protein 1##BT019604|VBP1|7411|von Hippel-Lindau binding protein 1##AL834460|RAB39B|116442|RAB39B, member RAS oncogene family##AY052478|RAB39B|116442|RAB39B, member RAS oncogene family##NM_171998|RAB39B|116442|RAB39B, member RAS oncogene family##BC009714|RAB39B|116442|RAB39B, member RAS oncogene family##AM393055|CLIC2|1193|chloride intracellular channel 2##AY191592|CLIC2|1193|chloride intracellular channel 2##DQ892014|CLIC2|1193|chloride intracellular channel 2##DQ895204|CLIC2|1193|chloride intracellular channel 2##BC022305|CLIC2|1193|chloride intracellular channel 2##BC005367|CLIC2|1193|chloride intracellular channel 2##AK292785|CLIC2|1193|chloride intracellular channel 2##Y12696|CLIC2|1193|chloride intracellular channel 2##NM_001289|CLIC2|1193|chloride intracellular channel 2	1.665266	denovo_WM_21:-45:0.960	denovo_WM_21:78:0.705
chr6	116601141	116601254	reg1000643.p1	6.774	+	TSC_hg19_v1_chr6_-_116601123 NM_003309	-7	-	TSC_hg19_v1_chr6_-_116601094 AL136629 BC068554 BC048969	-104	-	TSC_hg19_v1_chr6_-_116601062 CR533535 AK297717	-514	-	BC039245 NM_001080976 BC043526	124	+	TSC_hg19_v1_chr6_+_116692109 NM_013352 AF098066	90946	+	TSC_hg19_v1_chr6_-_116692863 AK298559 AK316303	91672	-	NM_003309|TSPYL1|7259|TSPY-like 1##AL136629|TSPYL1|7259|TSPY-like 1##BC068554|TSPYL1|7259|TSPY-like 1##BC048969|TSPYL1|7259|TSPY-like 1##CR533535|TSPYL1|7259|TSPY-like 1##BC039245|DSE|29940|dermatan sulfate epimerase##NM_001080976|DSE|29940|dermatan sulfate epimerase##BC043526|DSE|29940|dermatan sulfate epimerase##NM_013352|DSE|29940|dermatan sulfate epimerase##AF098066|DSE|29940|dermatan sulfate epimerase##AK298559|LOC100287467|100287467|uncharacterized LOC100287467##AK316303|LOC100287467|100287467|uncharacterized LOC100287467	0.074073	
chr1	197115808	197115912	reg1000388.p1	6.772	+	AF509326 AY099892 AY367065 AY971955 AY971956 AY971957 BC015396 TSC_hg19_v1_chr1_-_197115800 AK226178 AK125107 NM_001206846 NM_018136	-166	-	M14057 AB527321 AK290560 NM_001994	-79487	-	AK314026 NM_030787 BC026282 AF295327 BC111773 AB590626	-169131	+	BC132818 BC136600 AK128549 AY163816 NM_194314	53793	-	NM_001193640 NM_201253 AK299368 AK289733 AK307844 AB208923 AF154671 AY043324 AY043325 BC136271 BC143726 AJ748821	121577	+	AK000061 TSC_hg19_v1_chr1_-_197552357	436472	-	AF509326|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AY099892|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AY367065|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AY971955|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AY971956|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AY971957|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##BC015396|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AK226178|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AK125107|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##NM_001206846|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##NM_018136|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##M14057|F13B|2165|coagulation factor XIII, B polypeptide##AK290560|F13B|2165|coagulation factor XIII, B polypeptide##NM_001994|F13B|2165|coagulation factor XIII, B polypeptide##AK314026|CFHR5|81494|complement factor H-related 5##NM_030787|CFHR5|81494|complement factor H-related 5##BC026282|CFHR5|81494|complement factor H-related 5##AF295327|CFHR5|81494|complement factor H-related 5##BC111773|CFHR5|81494|complement factor H-related 5##BC132818|ZBTB41|360023|zinc finger and BTB domain containing 41##BC136600|ZBTB41|360023|zinc finger and BTB domain containing 41##AK128549|ZBTB41|360023|zinc finger and BTB domain containing 41##AY163816|ZBTB41|360023|zinc finger and BTB domain containing 41##NM_194314|ZBTB41|360023|zinc finger and BTB domain containing 41##NM_001193640|CRB1|23418|crumbs homolog 1 (Drosophila)##NM_201253|CRB1|23418|crumbs homolog 1 (Drosophila)##AK299368|CRB1|23418|crumbs homolog 1 (Drosophila)##AK289733|CRB1|23418|crumbs homolog 1 (Drosophila)##AK307844|CRB1|23418|crumbs homolog 1 (Drosophila)##AB208923|CRB1|23418|crumbs homolog 1 (Drosophila)##AF154671|CRB1|23418|crumbs homolog 1 (Drosophila)##AY043324|CRB1|23418|crumbs homolog 1 (Drosophila)##AY043325|CRB1|23418|crumbs homolog 1 (Drosophila)##BC136271|CRB1|23418|crumbs homolog 1 (Drosophila)##BC143726|CRB1|23418|crumbs homolog 1 (Drosophila)##AJ748821|CRB1|23418|crumbs homolog 1 (Drosophila)##AK000061|DENND1B|163486|DENN/MADD domain containing 1B	0.734513	denovo_WM_21:3:0.495
chr11	82867840	82867967	reg1000663.p2	6.770	+	BC031316 TSC_hg19_v1_chr11_+_82783118	-84785	+	BC014213 NM_014488 TSC_hg19_v1_chr11_-_82782897 BX641138	-85006	-	AK312323 TSC_hg19_v1_chr11_-_82782872	-85030	-	NM_015885 TSC_hg19_v1_chr11_+_82868196 AK302606 AF046935 AK025103 AB020631 BC146778 BC110432 BC065384	502	+	AK311356 TSC_hg19_v1_chr11_-_82904700	36799	-	TSC_hg19_v1_chr11_+_82904780 DQ508934 BC045621 AK310765 EF041819	36931	+	BC031316|LOC100506233|100506233|uncharacterized LOC100506233##BC014213|RAB30|27314|RAB30, member RAS oncogene family##NM_014488|RAB30|27314|RAB30, member RAS oncogene family##BX641138|RAB30|27314|RAB30, member RAS oncogene family##AK312323|RAB30|27314|RAB30, member RAS oncogene family##NM_015885|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##AK302606|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##AF046935|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##AK025103|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##AB020631|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##BC146778|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##BC110432|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##BC065384|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##AK311356|DKFZp547G183|55525|uncharacterized LOC55525##DQ508934|ANKRD42|338699|ankyrin repeat domain 42##BC045621|ANKRD42|338699|ankyrin repeat domain 42##AK310765|ANKRD42|338699|ankyrin repeat domain 42##EF041819|ANKRD42|338699|ankyrin repeat domain 42	1.021637	denovo_WM_21:64:0.972
chr12	104323931	104324099	reg1000496.p1	6.766	+	TSC_hg19_v1_chr12_-_104234976 BC052293 NM_001031701	-89036	-	AB032773 TSC_hg19_v1_chr12_-_104234857	-89191	-	AY311388 AJ295695 NM_017564 AB052958	-342954	+	TSC_hg19_v1_chr12_+_104324159 AJ890084 AK025459	143	+	TSC_hg19_v1_chr12_+_104324187 AK298996 AK300521 NM_003299 S74939 X15187	172	+	TSC_hg19_v1_chr12_+_104324199 BC066656	184	+	BC052293|NT5DC3|51559|5'-nucleotidase domain containing 3##NM_001031701|NT5DC3|51559|5'-nucleotidase domain containing 3##AB032773|NT5DC3|51559|5'-nucleotidase domain containing 3##AY311388|STAB2|55576|stabilin 2##AJ295695|STAB2|55576|stabilin 2##NM_017564|STAB2|55576|stabilin 2##AB052958|STAB2|55576|stabilin 2##AJ890084|HSP90B1|7184|heat shock protein 90kDa beta (Grp94), member 1##AK025459|HSP90B1|7184|heat shock protein 90kDa beta (Grp94), member 1##AK298996|HSP90B1|7184|heat shock protein 90kDa beta (Grp94), member 1##AK300521|HSP90B1|7184|heat shock protein 90kDa beta (Grp94), member 1##NM_003299|HSP90B1|7184|heat shock protein 90kDa beta (Grp94), member 1##X15187|HSP90B1|7184|heat shock protein 90kDa beta (Grp94), member 1##BC066656|HSP90B1|7184|heat shock protein 90kDa beta (Grp94), member 1	1.471968	denovo_WM_21:-17:0.949	denovo_WM_21:33:0.478
chr2	65283340	65283443	reg1000497.p1	6.766	+	TSC_hg19_v1_chr2_+_65216532 AK223486 AK313052 BC072423 BC026216 L14595 L19444 AB026689 DQ891127 DQ894306	-66741	+	TSC_hg19_v1_chr2_+_65216485 AK298472 AK315986 NM_003038	-66900	+	TSC_hg19_v1_chr2_+_65215619 NM_001193493 AK295687	-67791	+	TSC_hg19_v1_chr2_+_65283579 AB011154 NM_015147 AK093846 AK000856 AK299373 AK304110 AK301173 AK098786 BX648774 BC030534 BC002982 BC004873	169	+	AF498929 BT019528 BT019529 CR533479 CR536488 AB464118 AB590355 AM392684 CU674450 DQ894084 EU831590 EU831675 TSC_hg19_v1_chr2_-_65357083 M28209	73684	-	TSC_hg19_v1_chr2_-_65357236 BC000905 BX571747 AL050268 AK303678 AK055927 AK315495	73828	-	AK223486|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK313052|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##BC072423|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##BC026216|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##L14595|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##L19444|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AB026689|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##DQ891127|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##DQ894306|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK298472|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK315986|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##NM_003038|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##NM_001193493|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK295687|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AB011154|CEP68|23177|centrosomal protein 68kDa##NM_015147|CEP68|23177|centrosomal protein 68kDa##AK093846|CEP68|23177|centrosomal protein 68kDa##AK000856|CEP68|23177|centrosomal protein 68kDa##AK299373|CEP68|23177|centrosomal protein 68kDa##AK304110|CEP68|23177|centrosomal protein 68kDa##AK301173|CEP68|23177|centrosomal protein 68kDa##AK098786|CEP68|23177|centrosomal protein 68kDa##BX648774|CEP68|23177|centrosomal protein 68kDa##BC030534|CEP68|23177|centrosomal protein 68kDa##BC002982|CEP68|23177|centrosomal protein 68kDa##BC004873|CEP68|23177|centrosomal protein 68kDa##AF498929|RAB1A|5861|RAB1A, member RAS oncogene family##BT019528|RAB1A|5861|RAB1A, member RAS oncogene family##BT019529|RAB1A|5861|RAB1A, member RAS oncogene family##CR533479|RAB1A|5861|RAB1A, member RAS oncogene family##CR536488|RAB1A|5861|RAB1A, member RAS oncogene family##AM392684|RAB1A|5861|RAB1A, member RAS oncogene family##DQ894084|RAB1A|5861|RAB1A, member RAS oncogene family##EU831590|RAB1A|5861|RAB1A, member RAS oncogene family##EU831675|RAB1A|5861|RAB1A, member RAS oncogene family##M28209|RAB1A|5861|RAB1A, member RAS oncogene family##BC000905|RAB1A|5861|RAB1A, member RAS oncogene family##BX571747|RAB1A|5861|RAB1A, member RAS oncogene family##AL050268|RAB1A|5861|RAB1A, member RAS oncogene family##AK303678|RAB1A|5861|RAB1A, member RAS oncogene family##AK055927|RAB1A|5861|RAB1A, member RAS oncogene family##AK315495|RAB1A|5861|RAB1A, member RAS oncogene family	0.077217	
chr6	26033837	26033989	reg1000693.p1	6.766	+	BC125140 NM_003513 AK311785	-94	-	BC069133 BC096132 BC096133 BC096134 NM_003537 BC099630 TSC_hg19_v1_chr6_-_26032328	-1604	-	BC069467 NM_003544 AB528660 CU686828 TSC_hg19_v1_chr6_-_26027514	-6417	-	BC096728 EU446966 NM_021062	9971	-	BC058834 TSC_hg19_v1_chr6_+_26045611 BC127610 NM_003531	11715	+	TSC_hg19_v1_chr6_-_26056699 AB451259 AB451385 EU446960 EU832089 EU832181 AB590706 CU678090 BC002649 AK290947 D28457 NM_005319	22763	-	BC125140|HIST1H2AB|8335|histone cluster 1, H2ab##NM_003513|HIST1H2AB|8335|histone cluster 1, H2ab##AK311785|HIST1H2AB|8335|histone cluster 1, H2ab##BC069133|HIST1H3B|8358|histone cluster 1, H3b##BC096132|HIST1H3B|8358|histone cluster 1, H3b##BC096133|HIST1H3B|8358|histone cluster 1, H3b##BC096134|HIST1H3B|8358|histone cluster 1, H3b##NM_003537|HIST1H3B|8358|histone cluster 1, H3b##BC099630|HIST1H3B|8358|histone cluster 1, H3b##BC069467|HIST1H4B|8366|histone cluster 1, H4b##NM_003544|HIST1H4B|8366|histone cluster 1, H4b##BC096728|HIST1H2BB|3018|histone cluster 1, H2bb##EU446966|HIST1H2BB|3018|histone cluster 1, H2bb##NM_021062|HIST1H2BB|3018|histone cluster 1, H2bb##BC058834|HIST1H3C|8352|histone cluster 1, H3c##BC127610|HIST1H3C|8352|histone cluster 1, H3c##NM_003531|HIST1H3C|8352|histone cluster 1, H3c##AB451259|HIST1H1C|3006|histone cluster 1, H1c##AB451385|HIST1H1C|3006|histone cluster 1, H1c##EU446960|HIST1H1C|3006|histone cluster 1, H1c##EU832089|HIST1H1C|3006|histone cluster 1, H1c##EU832181|HIST1H1C|3006|histone cluster 1, H1c##BC002649|HIST1H1C|3006|histone cluster 1, H1c##AK290947|HIST1H1C|3006|histone cluster 1, H1c##NM_005319|HIST1H1C|3006|histone cluster 1, H1c	1.074012	denovo_WM_21:-3:0.972
chr22	39101396	39101502	reg1000132.p1	6.762	+	CR456923 CU677177 CU013023 CU013311 CR456473 AK291827 BC015026 D31884 TSC_hg19_v1_chr22_-_39096285 NM_014876	-5225	-	AK312076 TSC_hg19_v1_chr22_+_39077979 CU013025 CU013313 DQ893045 DQ896289	-23468	+	TSC_hg19_v1_chr22_+_39077977 BC009363 CR456475	-23473	+	NM_004286 TSC_hg19_v1_chr22_+_39101925	416	+	TSC_hg19_v1_chr22_+_39101984 EU831484 EU831571 BC014075 AB385030 CR456501 CU013098 CU013386 U87964	578	+	AK304188 TSC_hg19_v1_chr22_-_39150957 AK295787	49534	-	CR456923|JOSD1|9929|Josephin domain containing 1##CU013023|JOSD1|9929|Josephin domain containing 1##CU013311|JOSD1|9929|Josephin domain containing 1##CR456473|JOSD1|9929|Josephin domain containing 1##AK291827|JOSD1|9929|Josephin domain containing 1##BC015026|JOSD1|9929|Josephin domain containing 1##D31884|JOSD1|9929|Josephin domain containing 1##NM_014876|JOSD1|9929|Josephin domain containing 1##AK312076|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##CU013025|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##CU013313|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##DQ893045|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##DQ896289|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##BC009363|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##CR456475|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##NM_004286|GTPBP1|9567|GTP binding protein 1##EU831484|GTPBP1|9567|GTP binding protein 1##EU831571|GTPBP1|9567|GTP binding protein 1##BC014075|GTPBP1|9567|GTP binding protein 1##CR456501|GTPBP1|9567|GTP binding protein 1##CU013098|GTPBP1|9567|GTP binding protein 1##CU013386|GTPBP1|9567|GTP binding protein 1##U87964|GTPBP1|9567|GTP binding protein 1##AK304188|SUN2|25777|Sad1 and UNC84 domain containing 2##AK295787|SUN2|25777|Sad1 and UNC84 domain containing 2	0.0	
chr7	64254658	64254779	reg1000752.p1	6.762	+	TSC_hg19_v1_chr7_+_64126510 AK303931 BC017809 NM_001013746 NM_016220 BC047243	-128191	+	TSC_hg19_v1_chr7_-_64023456 AK122937 BC030700 NM_001130022 NM_178558	-231239	-	TSC_hg19_v1_chr7_-_64023450 AK094476	-231271	-	TSC_hg19_v1_chr7_+_64254799 NM_001160183 NM_006524 AK294302 AK298230 AK055644 BC141847 BC037426	97	+	AK090648 AX746558 TSC_hg19_v1_chr7_+_64342925	88184	+	NM_021148 BC007078 BC019234 BC008386 BC063818 BC108740	108941	+	AK303931|ZNF107|51427|zinc finger protein 107##BC017809|ZNF107|51427|zinc finger protein 107##NM_001013746|ZNF107|51427|zinc finger protein 107##NM_016220|ZNF107|51427|zinc finger protein 107##BC047243|ZNF107|51427|zinc finger protein 107##AK122937|ZNF680|340252|zinc finger protein 680##BC030700|ZNF680|340252|zinc finger protein 680##NM_001130022|ZNF680|340252|zinc finger protein 680##NM_178558|ZNF680|340252|zinc finger protein 680##NM_001160183|ZNF138|7697|zinc finger protein 138##NM_006524|ZNF138|7697|zinc finger protein 138##AK294302|ZNF138|7697|zinc finger protein 138##AK298230|ZNF138|7697|zinc finger protein 138##AK055644|ZNF138|7697|zinc finger protein 138##BC141847|ZNF138|7697|zinc finger protein 138##BC037426|ZNF138|7697|zinc finger protein 138##AK090648|ZNF273|10793|zinc finger protein 273##NM_021148|ZNF273|10793|zinc finger protein 273##BC007078|ZNF273|10793|zinc finger protein 273##BC019234|ZNF273|10793|zinc finger protein 273##BC008386|ZNF273|10793|zinc finger protein 273##BC063818|ZNF273|10793|zinc finger protein 273##BC108740|ZNF273|10793|zinc finger protein 273	0.858649	denovo_WM_21:4:0.848
chr19	4474712	4474830	reg1000627.p1	6.761	+	TSC_hg19_v1_chr19_+_4472263 NM_001001520 NM_032631 AY358600 AF294267 BC000755 CU674386 DQ892175 DQ895370	-2424	+	AF272893 NM_025241	-16982	-	AF272894 BC008288 NM_001171091	-19482	-	BC009449 TSC_hg19_v1_chr19_+_4488757	13955	+	NM_001080400	42944	-	DQ839131 BC131524 BC033570 NM_001013706 TSC_hg19_v1_chr19_-_4535237	60449	-	NM_001001520|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##NM_032631|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##AY358600|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##AF294267|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##BC000755|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##DQ892175|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##DQ895370|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##AF272893|UBXN6|80700|UBX domain protein 6##NM_025241|UBXN6|80700|UBX domain protein 6##AF272894|UBXN6|80700|UBX domain protein 6##BC008288|UBXN6|80700|UBX domain protein 6##NM_001171091|UBXN6|80700|UBX domain protein 6##BC009449|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##NM_001080400|PLIN4|729359|perilipin 4##DQ839131|PLIN5|440503|perilipin 5##BC131524|PLIN5|440503|perilipin 5##BC033570|PLIN5|440503|perilipin 5##NM_001013706|PLIN5|440503|perilipin 5	0.0	
chr10	99205759	99205874	reg1000723.p1	6.750	+	AB463620 AK307229 TSC_hg19_v1_chr10_-_99205764 BC022067 AF151866 BC012538 AK313717 AK091709 NM_016046	-55	-	TSC_hg19_v1_chr10_+_99186042 AY007118 BC053356 BC062302 BC073742 AK312351 DQ893065 DQ896318 BC011678 CR541659 CR541744	-19763	+	J04173 TSC_hg19_v1_chr10_+_99186040	-19776	+	TSC_hg19_v1_chr10_+_99205934 BC008074 BC012830 NM_032327 NM_198043 NM_198044 NM_198045 AK297962 AK074427 BC011749 BC050652 NM_198046	116	+	TSC_hg19_v1_chr10_+_99205966 AF258563 BC033157 BC004535	144	+	TSC_hg19_v1_chr10_+_99205974 AY359080 AJ294945	195	+	AK307229|EXOSC1|51013|exosome component 1##BC022067|EXOSC1|51013|exosome component 1##AF151866|EXOSC1|51013|exosome component 1##BC012538|EXOSC1|51013|exosome component 1##AK313717|EXOSC1|51013|exosome component 1##AK091709|EXOSC1|51013|exosome component 1##NM_016046|EXOSC1|51013|exosome component 1##AY007118|PGAM1|5223|phosphoglycerate mutase 1 (brain)##BC053356|PGAM1|5223|phosphoglycerate mutase 1 (brain)##BC062302|PGAM1|5223|phosphoglycerate mutase 1 (brain)##BC073742|PGAM1|5223|phosphoglycerate mutase 1 (brain)##AK312351|PGAM1|5223|phosphoglycerate mutase 1 (brain)##DQ893065|PGAM1|5223|phosphoglycerate mutase 1 (brain)##DQ896318|PGAM1|5223|phosphoglycerate mutase 1 (brain)##BC011678|PGAM1|5223|phosphoglycerate mutase 1 (brain)##CR541659|PGAM1|5223|phosphoglycerate mutase 1 (brain)##CR541744|PGAM1|5223|phosphoglycerate mutase 1 (brain)##J04173|PGAM1|5223|phosphoglycerate mutase 1 (brain)##BC008074|ZDHHC16|84287|zinc finger, DHHC-type containing 16##BC012830|ZDHHC16|84287|zinc finger, DHHC-type containing 16##NM_032327|ZDHHC16|84287|zinc finger, DHHC-type containing 16##NM_198043|ZDHHC16|84287|zinc finger, DHHC-type containing 16##NM_198044|ZDHHC16|84287|zinc finger, DHHC-type containing 16##NM_198045|ZDHHC16|84287|zinc finger, DHHC-type containing 16##AK297962|ZDHHC16|84287|zinc finger, DHHC-type containing 16##AK074427|ZDHHC16|84287|zinc finger, DHHC-type containing 16##BC011749|ZDHHC16|84287|zinc finger, DHHC-type containing 16##BC050652|ZDHHC16|84287|zinc finger, DHHC-type containing 16##NM_198046|ZDHHC16|84287|zinc finger, DHHC-type containing 16##AF258563|ZDHHC16|84287|zinc finger, DHHC-type containing 16##BC033157|ZDHHC16|84287|zinc finger, DHHC-type containing 16##BC004535|ZDHHC16|84287|zinc finger, DHHC-type containing 16##AY359080|ZDHHC16|84287|zinc finger, DHHC-type containing 16##AJ294945|ZDHHC16|84287|zinc finger, DHHC-type containing 16	0.972447	denovo_WM_21:-26:0.972
chr1	27816669	27816777	reg1000519.p1	6.742	+	TSC_hg19_v1_chr1_-_27816676 NM_001201404 NM_006990	-47	-	TSC_hg19_v1_chr1_-_27816670 BC012329	-52	-	TSC_hg19_v1_chr1_-_27816621 AK303011 BC032724 BC050093 BC040943	-123	-	BC042058 NM_001029882	113398	-	BC064935 TSC_hg19_v1_chr1_-_27930394	113654	-	AK125143 TSC_hg19_v1_chr1_-_27952648 NM_001042747	135947	-	NM_001201404|WASF2|10163|WAS protein family, member 2##NM_006990|WASF2|10163|WAS protein family, member 2##BC012329|WASF2|10163|WAS protein family, member 2##AK303011|WASF2|10163|WAS protein family, member 2##BC032724|WASF2|10163|WAS protein family, member 2##BC040943|WASF2|10163|WAS protein family, member 2##NM_001029882|AHDC1|27245|AT hook, DNA binding motif, containing 1##BC064935|AHDC1|27245|AT hook, DNA binding motif, containing 1##AK125143|FGR|2268|Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog##NM_001042747|FGR|2268|Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog	1.149999	denovo_WM_21:-15:0.951
chr16	89557056	89557174	reg1000086.p1	6.738	+	BC052290 BC069013 BC041059 BC017437 TSC_hg19_v1_chr16_-_89556970 AY373756 NM_013275	-184	-	AK293862 NM_001242885	-169575	+	BC041585 TSC_hg19_v1_chr16_-_89351073	-206159	-	NM_003119 NM_199367 TSC_hg19_v1_chr16_+_89574810 BC036104 Y16610 BC007692 EU832769 GQ129312 AB527784	17699	+	TSC_hg19_v1_chr16_+_89627066 BC106058 NM_000977 NM_001243130 NM_001243131	69950	+	TSC_hg19_v1_chr16_+_89627089 BC093063 AK026501 AK093246 AK130964 AK290893 AK294655 AK308545 BC066320 D28432 X64707 AK025405 AK127579 AK130963 AK297198 BC007345 BC004954 BC006179 BC063378 BC007805 BC013078 BC014167 BC027463 BC010994 BC000851 BC020804 NM_033251 BC007563	69992	+	BC052290|ANKRD11|29123|ankyrin repeat domain 11##BC069013|ANKRD11|29123|ankyrin repeat domain 11##BC041059|ANKRD11|29123|ankyrin repeat domain 11##BC017437|ANKRD11|29123|ankyrin repeat domain 11##AY373756|ANKRD11|29123|ankyrin repeat domain 11##NM_013275|ANKRD11|29123|ankyrin repeat domain 11##AK293862|LOC100287036|100287036|uncharacterized LOC100287036##NM_001242885|LOC100287036|100287036|uncharacterized LOC100287036##BC041585|ANKRD11|29123|ankyrin repeat domain 11##NM_003119|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##NM_199367|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC036104|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##Y16610|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC007692|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##EU832769|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##GQ129312|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC106058|RPL13|6137|ribosomal protein L13##NM_000977|RPL13|6137|ribosomal protein L13##NM_001243130|RPL13|6137|ribosomal protein L13##NM_001243131|RPL13|6137|ribosomal protein L13##BC093063|RPL13|6137|ribosomal protein L13##AK026501|RPL13|6137|ribosomal protein L13##AK130964|RPL13|6137|ribosomal protein L13##AK290893|RPL13|6137|ribosomal protein L13##AK294655|RPL13|6137|ribosomal protein L13##AK308545|RPL13|6137|ribosomal protein L13##BC066320|RPL13|6137|ribosomal protein L13##D28432|RPL13|6137|ribosomal protein L13##X64707|RPL13|6137|ribosomal protein L13##AK025405|RPL13|6137|ribosomal protein L13##AK127579|RPL13|6137|ribosomal protein L13##AK130963|RPL13|6137|ribosomal protein L13##AK297198|RPL13|6137|ribosomal protein L13##BC007345|RPL13|6137|ribosomal protein L13##BC004954|RPL13|6137|ribosomal protein L13##BC006179|RPL13|6137|ribosomal protein L13##BC063378|RPL13|6137|ribosomal protein L13##BC007805|RPL13|6137|ribosomal protein L13##BC013078|RPL13|6137|ribosomal protein L13##BC014167|RPL13|6137|ribosomal protein L13##BC027463|RPL13|6137|ribosomal protein L13##BC010994|RPL13|6137|ribosomal protein L13##BC000851|RPL13|6137|ribosomal protein L13##BC020804|RPL13|6137|ribosomal protein L13##NM_033251|RPL13|6137|ribosomal protein L13##BC007563|RPL13|6137|ribosomal protein L13	0.956351	denovo_WM_21:-59:0.205	denovo_WM_21:-85:0.751
chr16	11439122	11439253	reg1000622.p1	6.723	+	BT006746 AY651260 Y00443 AK311987 BC003673 NM_002761	-64045	-	BC042671 X07862 AK130957 AK131573 AK292447 AK307320 AK311798 BC005303 BC066338 NM_002762	-68867	-	NM_021247	-71736	-	TSC_hg19_v1_chr16_+_11439303 AK123764 BC031016 BC022427 NM_152308	107	+	TSC_hg19_v1_chr16_+_11439315 BC013040	131	+	BC096063 BC096064 BC096065 BC096066 BC101401 BC101969 BC101402 AB034747 NM_004862 U77396	241000	-	BT006746|PRM1|5619|protamine 1##AY651260|PRM1|5619|protamine 1##Y00443|PRM1|5619|protamine 1##AK311987|PRM1|5619|protamine 1##BC003673|PRM1|5619|protamine 1##NM_002761|PRM1|5619|protamine 1##BC042671|PRM2|5620|protamine 2##X07862|PRM2|5620|protamine 2##AK130957|PRM2|5620|protamine 2##AK131573|PRM2|5620|protamine 2##AK292447|PRM2|5620|protamine 2##AK311798|PRM2|5620|protamine 2##BC005303|PRM2|5620|protamine 2##BC066338|PRM2|5620|protamine 2##NM_002762|PRM2|5620|protamine 2##NM_021247|PRM3|58531|protamine 3##AK123764|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC031016|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC022427|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##NM_152308|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC013040|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC096063|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096064|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096065|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096066|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101401|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101969|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101402|LITAF|9516|lipopolysaccharide-induced TNF factor##AB034747|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_004862|LITAF|9516|lipopolysaccharide-induced TNF factor##U77396|LITAF|9516|lipopolysaccharide-induced TNF factor	0.234738	
chr17	18086679	18086814	reg1000648.p2	6.707	+	AF144094 NM_016239	-74727	+	TSC_hg19_v1_chr17_+_17991289 AK313362 BC062572 BC000493 NM_001388 AK297569 X80754 AK295575 DQ890768 DQ893929 BT006976	-95478	+	TSC_hg19_v1_chr17_+_17942750 BC041829 NM_024052 AK315083 AK074284 AK127580 BC000636	-143939	+	TSC_hg19_v1_chr17_+_18086815 NM_017758	93	+	TSC_hg19_v1_chr17_+_18087141 AK301107 BC062339	443	+	TSC_hg19_v1_chr17_+_18128931 BC028037 NM_004140 BC151838 BC028214 X86371	42192	+	AF144094|MYO15A|51168|myosin XVA##NM_016239|MYO15A|51168|myosin XVA##AK313362|DRG2|1819|developmentally regulated GTP binding protein 2##BC062572|DRG2|1819|developmentally regulated GTP binding protein 2##BC000493|DRG2|1819|developmentally regulated GTP binding protein 2##NM_001388|DRG2|1819|developmentally regulated GTP binding protein 2##AK297569|DRG2|1819|developmentally regulated GTP binding protein 2##X80754|DRG2|1819|developmentally regulated GTP binding protein 2##AK295575|DRG2|1819|developmentally regulated GTP binding protein 2##DQ890768|DRG2|1819|developmentally regulated GTP binding protein 2##DQ893929|DRG2|1819|developmentally regulated GTP binding protein 2##BT006976|DRG2|1819|developmentally regulated GTP binding protein 2##BC041829|C17orf39|79018|chromosome 17 open reading frame 39##NM_024052|C17orf39|79018|chromosome 17 open reading frame 39##AK315083|C17orf39|79018|chromosome 17 open reading frame 39##AK074284|C17orf39|79018|chromosome 17 open reading frame 39##AK127580|C17orf39|79018|chromosome 17 open reading frame 39##BC000636|C17orf39|79018|chromosome 17 open reading frame 39##NM_017758|ALKBH5|54890|alkB, alkylation repair homolog 5 (E. coli)##AK301107|ALKBH5|54890|alkB, alkylation repair homolog 5 (E. coli)##BC062339|ALKBH5|54890|alkB, alkylation repair homolog 5 (E. coli)##BC028037|LLGL1|3996|lethal giant larvae homolog 1 (Drosophila)##NM_004140|LLGL1|3996|lethal giant larvae homolog 1 (Drosophila)##BC151838|LLGL1|3996|lethal giant larvae homolog 1 (Drosophila)##BC028214|LLGL1|3996|lethal giant larvae homolog 1 (Drosophila)##X86371|LLGL1|3996|lethal giant larvae homolog 1 (Drosophila)	0.0	
chr11	61891330	61891467	reg1000698.p2	6.706	+	TSC_hg19_v1_chr11_+_61735277 AK093779 AX748301 BC132894 BC132896	-156064	+	TSC_hg19_v1_chr11_-_61735173 NM_002032	-156251	-	BC020300 BC015946 BC063514 TSC_hg19_v1_chr11_-_61735103 BC011359 BC070494 AB062402 BC013724 BC073750 BC000857 BC035441 AK307190 AK311818 BC016009 BC066341 BC066961 BC104643 BC105802 L20941 D28463	-156311	-	TSC_hg19_v1_chr11_+_61891482 AK307633 BC098576 NM_001040694 NM_020238 AK056195 AK310714 BC032678	74	+	BC062693 AJ224171 BC069170 BC069289 NM_006552	66300	+	AF071219 NM_002407 BC062218 AJ224173	84753	+	AK093779|LOC399900|399900|uncharacterized LOC399900##BC132894|LOC399900|399900|uncharacterized LOC399900##BC132896|LOC399900|399900|uncharacterized LOC399900##NM_002032|FTH1|2495|ferritin, heavy polypeptide 1##BC020300|FTH1|2495|ferritin, heavy polypeptide 1##BC015946|FTH1|2495|ferritin, heavy polypeptide 1##BC063514|FTH1|2495|ferritin, heavy polypeptide 1##BC011359|FTH1|2495|ferritin, heavy polypeptide 1##BC070494|FTH1|2495|ferritin, heavy polypeptide 1##AB062402|FTH1|2495|ferritin, heavy polypeptide 1##BC013724|FTH1|2495|ferritin, heavy polypeptide 1##BC073750|FTH1|2495|ferritin, heavy polypeptide 1##BC000857|FTH1|2495|ferritin, heavy polypeptide 1##BC035441|FTH1|2495|ferritin, heavy polypeptide 1##AK307190|CPSF7|79869|cleavage and polyadenylation specific factor 7, 59kDa##AK311818|FTH1|2495|ferritin, heavy polypeptide 1##BC016009|FTH1|2495|ferritin, heavy polypeptide 1##BC066341|FTH1|2495|ferritin, heavy polypeptide 1##BC066961|FTH1|2495|ferritin, heavy polypeptide 1##BC104643|FTH1|2495|ferritin, heavy polypeptide 1##BC105802|FTH1|2495|ferritin, heavy polypeptide 1##L20941|FTH1|2495|ferritin, heavy polypeptide 1##D28463|FTH1|2495|ferritin, heavy polypeptide 1##AK307633|INCENP|3619|inner centromere protein antigens 135/155kDa##BC098576|INCENP|3619|inner centromere protein antigens 135/155kDa##NM_001040694|INCENP|3619|inner centromere protein antigens 135/155kDa##NM_020238|INCENP|3619|inner centromere protein antigens 135/155kDa##AK056195|INCENP|3619|inner centromere protein antigens 135/155kDa##AK310714|INCENP|3619|inner centromere protein antigens 135/155kDa##BC032678|INCENP|3619|inner centromere protein antigens 135/155kDa##BC062693|SCGB1D1|10648|secretoglobin, family 1D, member 1##AJ224171|SCGB1D1|10648|secretoglobin, family 1D, member 1##BC069170|SCGB1D1|10648|secretoglobin, family 1D, member 1##BC069289|SCGB1D1|10648|secretoglobin, family 1D, member 1##NM_006552|SCGB1D1|10648|secretoglobin, family 1D, member 1##AF071219|SCGB2A1|4246|secretoglobin, family 2A, member 1##NM_002407|SCGB2A1|4246|secretoglobin, family 2A, member 1##BC062218|SCGB2A1|4246|secretoglobin, family 2A, member 1##AJ224173|SCGB2A1|4246|secretoglobin, family 2A, member 1	1.638671	denovo_WM_21:14:0.696	denovo_WM_21:-18:0.942
chr14	21905417	21905562	reg1000651.p1	6.706	+	CR749315 TSC_hg19_v1_chr14_-_21905405 AK122910 NM_020920	-61	-	NM_001170629	-5623	-	AK024072 NM_007192	-53065	-	AF091029 TSC_hg19_v1_chr14_-_21944789 AK300599	39299	-	TSC_hg19_v1_chr14_-_21944834 NM_001163380	39365	-	CU676744 DQ893243 DQ896572 AK027730 TSC_hg19_v1_chr14_-_21945094 AK296057 BX647601 BC066366 AK315354 AK307349 BC020839 AF468652 NM_032846	39600	-	CR749315|CHD8|57680|chromodomain helicase DNA binding protein 8##AK122910|CHD8|57680|chromodomain helicase DNA binding protein 8##NM_020920|CHD8|57680|chromodomain helicase DNA binding protein 8##NM_001170629|CHD8|57680|chromodomain helicase DNA binding protein 8##AK024072|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##NM_007192|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##AF091029|RAB2B|84932|RAB2B, member RAS oncogene family##AK300599|RAB2B|84932|RAB2B, member RAS oncogene family##NM_001163380|RAB2B|84932|RAB2B, member RAS oncogene family##DQ893243|RAB2B|84932|RAB2B, member RAS oncogene family##DQ896572|RAB2B|84932|RAB2B, member RAS oncogene family##AK027730|RAB2B|84932|RAB2B, member RAS oncogene family##AK296057|RAB2B|84932|RAB2B, member RAS oncogene family##BX647601|RAB2B|84932|RAB2B, member RAS oncogene family##BC066366|RAB2B|84932|RAB2B, member RAS oncogene family##AK315354|RAB2B|84932|RAB2B, member RAS oncogene family##AK307349|RAB2B|84932|RAB2B, member RAS oncogene family##BC020839|RAB2B|84932|RAB2B, member RAS oncogene family##AF468652|RAB2B|84932|RAB2B, member RAS oncogene family##NM_032846|RAB2B|84932|RAB2B, member RAS oncogene family	0.153892	
chr16	2205403	2205576	reg1000594.p1	6.683	+	TSC_hg19_v1_chr16_+_2198707 BC007681	-6744	+	TSC_hg19_v1_chr16_+_2198609 AY646153 BC066913 NM_014353	-6861	+	U24497 TSC_hg19_v1_chr16_-_2185898 L33243 NM_000296 NM_001009944	-19590	-	TSC_hg19_v1_chr16_+_2205783 AK090624 AX746540 NM_032271	292	+	TSC_hg19_v1_chr16_+_2205810 AY569455	338	+	NM_020764 AF451977	41004	-	BC007681|RAB26|25837|RAB26, member RAS oncogene family##AY646153|RAB26|25837|RAB26, member RAS oncogene family##BC066913|RAB26|25837|RAB26, member RAS oncogene family##NM_014353|RAB26|25837|RAB26, member RAS oncogene family##U24497|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)##L33243|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)##NM_000296|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)##NM_001009944|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)##AK090624|TRAF7|84231|TNF receptor-associated factor 7##NM_032271|TRAF7|84231|TNF receptor-associated factor 7##AY569455|TRAF7|84231|TNF receptor-associated factor 7##NM_020764|CASKIN1|57524|CASK interacting protein 1##AF451977|CASKIN1|57524|CASK interacting protein 1	0.403605	denovo_WM_21:108:0.384
chr19	19779459	19779626	reg1000674.p1	6.674	+	TSC_hg19_v1_chr19_-_19774501 NM_020410	-5033	-	AB058728 AB385506 TSC_hg19_v1_chr19_-_19774486 AK056420	-5058	-	TSC_hg19_v1_chr19_-_19754452 NM_016573	-25087	-	AK097169 BC094808 AY149174 NM_033204 BC119680 BC119681	115	+	AB464375 BC136323 AB021644 AK074832 TSC_hg19_v1_chr19_-_19843919 AK125668 NM_021030	64305	-	BC034236 AK289657 TSC_hg19_v1_chr19_-_19887212 BC037856	107663	-	NM_020410|ATP13A1|57130|ATPase type 13A1##AB058728|ATP13A1|57130|ATPase type 13A1##AK056420|ATP13A1|57130|ATPase type 13A1##NM_016573|GMIP|51291|GEM interacting protein##AK097169|ZNF101|94039|zinc finger protein 101##BC094808|ZNF101|94039|zinc finger protein 101##AY149174|ZNF101|94039|zinc finger protein 101##NM_033204|ZNF101|94039|zinc finger protein 101##BC119680|ZNF101|94039|zinc finger protein 101##BC119681|ZNF101|94039|zinc finger protein 101##BC136323|ZNF14|7561|zinc finger protein 14##AB021644|ZNF14|7561|zinc finger protein 14##AK074832|ZNF14|7561|zinc finger protein 14##NM_021030|ZNF14|7561|zinc finger protein 14##BC034236|LOC284440|284440|uncharacterized LOC284440##AK289657|LOC284440|284440|uncharacterized LOC284440##BC037856|LOC284440|284440|uncharacterized LOC284440	0.429662	denovo_WM_21:10:0.245
chr9	80911910	80912039	reg1000743.p2	6.673	+	TSC_hg19_v1_chr9_+_80850990 NM_001098802 NM_032171 AK303457 AK022705 BC058931 BC128058	-60944	+	AB463062 AF011496 AF329284 AF493896 AM392842 AM393393 AM393764 CU691228 L76256 BC075097 BC075096 U40038 BC057777 BC067850 BC069520 NM_002072	-265790	-	BC027886 TSC_hg19_v1_chr9_-_80263240 AK312460 NM_004297	-648743	-	AK295222 TSC_hg19_v1_chr9_+_80912042 AK295310 NM_021154 NM_058179 BC004863 BC018129 BC000971 BC001618 AK025460 BC016645 AY131232 AF113132 DQ894126 CU676192 CU677657 BT006840	84	+	TSC_hg19_v1_chr9_+_82186879 NM_007005	1274912	+	TSC_hg19_v1_chr9_+_82187539 BC036369 BC059405 AK057236	1275550	+	NM_001098802|CEP78|84131|centrosomal protein 78kDa##NM_032171|CEP78|84131|centrosomal protein 78kDa##AK303457|CEP78|84131|centrosomal protein 78kDa##AK022705|CEP78|84131|centrosomal protein 78kDa##BC058931|CEP78|84131|centrosomal protein 78kDa##BC128058|CEP78|84131|centrosomal protein 78kDa##AF011496|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AF329284|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AF493896|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM392842|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM393393|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM393764|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##L76256|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC075097|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC075096|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##U40038|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC057777|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC067850|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC069520|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##NM_002072|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC027886|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##AK312460|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##NM_004297|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##AK295222|PSAT1|29968|phosphoserine aminotransferase 1##AK295310|PSAT1|29968|phosphoserine aminotransferase 1##NM_021154|PSAT1|29968|phosphoserine aminotransferase 1##NM_058179|PSAT1|29968|phosphoserine aminotransferase 1##BC004863|PSAT1|29968|phosphoserine aminotransferase 1##BC018129|PSAT1|29968|phosphoserine aminotransferase 1##BC000971|PSAT1|29968|phosphoserine aminotransferase 1##AK025460|PSAT1|29968|phosphoserine aminotransferase 1##BC016645|PSAT1|29968|phosphoserine aminotransferase 1##AY131232|PSAT1|29968|phosphoserine aminotransferase 1##AF113132|PSAT1|29968|phosphoserine aminotransferase 1##DQ894126|PSAT1|29968|phosphoserine aminotransferase 1##BT006840|PSAT1|29968|phosphoserine aminotransferase 1##NM_007005|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC036369|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC059405|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK057236|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)	0.862646	denovo_WM_21:-12:0.333	denovo_WM_21:-42:0.530
chr12	27676944	27677079	reg1000774.p1	6.668	+	NM_001145010	-57269	+	BC043511 TSC_hg19_v1_chr12_-_27599649	-77407	-	TSC_hg19_v1_chr12_+_27485806 AF256215 NM_001248002 NM_001248003 NM_001248004 NM_001248005 NM_020183 AK296706 AF246960 AF246961 AF246962 AF246963 BC125062 BC125061	-191132	+	NM_001198915 NM_001198916 NM_003622 NM_177444 TSC_hg19_v1_chr12_+_27677138 BC022873 BC001560 AK294267 AB033056 BC050281 AB049149 AK314350 AF034802 BC046159	124	+	NM_001029874 BC140921 AY662682	172452	+	NM_001190864 NM_021821 TSC_hg19_v1_chr12_+_27863756 AF182422	186721	+	NM_001145010|C12orf70|341346|chromosome 12 open reading frame 70##BC043511|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF256215|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248002|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248003|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248004|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248005|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_020183|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AK296706|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246960|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246961|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246962|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246963|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##BC125062|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##BC125061|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001198915|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##NM_001198916|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##NM_003622|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##NM_177444|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##BC022873|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##BC001560|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##AK294267|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##AB033056|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##BC050281|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##AB049149|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##AK314350|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##AF034802|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##BC046159|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##NM_001029874|REP15|387849|RAB15 effector protein##BC140921|REP15|387849|RAB15 effector protein##AY662682|REP15|387849|RAB15 effector protein##NM_001190864|MRPS35|60488|mitochondrial ribosomal protein S35##NM_021821|MRPS35|60488|mitochondrial ribosomal protein S35##AF182422|MRPS35|60488|mitochondrial ribosomal protein S35	0.28918	
chr7	64363529	64363652	reg1000736.p1	6.637	+	AK090648 AX746558 TSC_hg19_v1_chr7_+_64342925	-20688	+	TSC_hg19_v1_chr7_+_64254799 NM_001160183 NM_006524 AK294302 AK298230 AK055644 BC141847 BC037426	-108775	+	TSC_hg19_v1_chr7_+_64126510 AK303931 BC017809 NM_001013746 NM_016220 BC047243	-237063	+	NM_021148 BC007078 BC019234 BC008386 BC063818 BC108740	69	+	M55422 NM_015852	87823	-	TSC_hg19_v1_chr7_-_64467066 AK295189 AK097499 NM_001007253	103474	-	AK090648|ZNF273|10793|zinc finger protein 273##NM_001160183|ZNF138|7697|zinc finger protein 138##NM_006524|ZNF138|7697|zinc finger protein 138##AK294302|ZNF138|7697|zinc finger protein 138##AK298230|ZNF138|7697|zinc finger protein 138##AK055644|ZNF138|7697|zinc finger protein 138##BC141847|ZNF138|7697|zinc finger protein 138##BC037426|ZNF138|7697|zinc finger protein 138##AK303931|ZNF107|51427|zinc finger protein 107##BC017809|ZNF107|51427|zinc finger protein 107##NM_001013746|ZNF107|51427|zinc finger protein 107##NM_016220|ZNF107|51427|zinc finger protein 107##BC047243|ZNF107|51427|zinc finger protein 107##NM_021148|ZNF273|10793|zinc finger protein 273##BC007078|ZNF273|10793|zinc finger protein 273##BC019234|ZNF273|10793|zinc finger protein 273##BC008386|ZNF273|10793|zinc finger protein 273##BC063818|ZNF273|10793|zinc finger protein 273##BC108740|ZNF273|10793|zinc finger protein 273##M55422|ZNF117|51351|zinc finger protein 117##NM_015852|ZNF117|51351|zinc finger protein 117##AK295189|ERV3-1|2086|endogenous retrovirus group 3, member 1##NM_001007253|ERV3-1|2086|endogenous retrovirus group 3, member 1	0.116765	
chr19	51182729	51182841	reg1000739.p1	6.635	+	TSC_hg19_v1_chr19_+_51152634 NM_001195076	-30118	+	NM_001160328 NM_001160329 BC031067 BC028379 TSC_hg19_v1_chr19_-_51143094	-39660	-	AL136594 NM_032298	-41484	-	AF163302 NM_016148	37409	-	TSC_hg19_v1_chr19_-_51223037 EU872208	40269	-	TSC_hg19_v1_chr19_+_51226620 AF020044 NM_002975 AK314141	43828	+	NM_001195076|C19orf81|342918|chromosome 19 open reading frame 81##NM_001160328|SYT3|84258|synaptotagmin III##NM_001160329|SYT3|84258|synaptotagmin III##BC031067|SYT3|84258|synaptotagmin III##BC028379|SYT3|84258|synaptotagmin III##AL136594|SYT3|84258|synaptotagmin III##NM_032298|SYT3|84258|synaptotagmin III##AF163302|SHANK1|50944|SH3 and multiple ankyrin repeat domains 1##NM_016148|SHANK1|50944|SH3 and multiple ankyrin repeat domains 1##AF020044|CLEC11A|6320|C-type lectin domain family 11, member A##NM_002975|CLEC11A|6320|C-type lectin domain family 11, member A##AK314141|CLEC11A|6320|C-type lectin domain family 11, member A	1.17535	denovo_WM_21:15:0.994
chr15	75165347	75165502	reg1000889.p1	6.633	+	TSC_hg19_v1_chr15_-_75135524 BC157884 NM_001099436 AL117482	-29819	-	TSC_hg19_v1_chr15_-_75135498 AK293181 BC036117	-29924	-	BC048289 TSC_hg19_v1_chr15_-_75135479	-29945	-	CR456800 AF005038 TSC_hg19_v1_chr15_-_75165693 AK315516 BC001376 BC004385 NM_005697 AK096794 AK096376 AK291884	231	-	TSC_hg19_v1_chr15_+_75182388 AK294030 AK301370 AK302354 BX648475 AF504648 AK225149 BC046357 AK292374 BC017351 NM_002435 X76057 CU692334 AB529030	16968	+	AK025373 TSC_hg19_v1_chr15_-_75194610	29152	-	BC157884|ULK3|25989|unc-51-like kinase 3 (C. elegans)##NM_001099436|ULK3|25989|unc-51-like kinase 3 (C. elegans)##AL117482|ULK3|25989|unc-51-like kinase 3 (C. elegans)##AK293181|ULK3|25989|unc-51-like kinase 3 (C. elegans)##BC036117|ULK3|25989|unc-51-like kinase 3 (C. elegans)##BC048289|ULK3|25989|unc-51-like kinase 3 (C. elegans)##CR456800|SCAMP2|10066|secretory carrier membrane protein 2##AF005038|SCAMP2|10066|secretory carrier membrane protein 2##AK315516|SCAMP2|10066|secretory carrier membrane protein 2##BC001376|SCAMP2|10066|secretory carrier membrane protein 2##BC004385|SCAMP2|10066|secretory carrier membrane protein 2##NM_005697|SCAMP2|10066|secretory carrier membrane protein 2##AK096794|SCAMP2|10066|secretory carrier membrane protein 2##AK096376|SCAMP2|10066|secretory carrier membrane protein 2##AK291884|SCAMP2|10066|secretory carrier membrane protein 2##AK294030|MPI|4351|mannose phosphate isomerase##AK301370|MPI|4351|mannose phosphate isomerase##AK302354|MPI|4351|mannose phosphate isomerase##BX648475|MPI|4351|mannose phosphate isomerase##AF504648|MPI|4351|mannose phosphate isomerase##AK225149|MPI|4351|mannose phosphate isomerase##BC046357|MPI|4351|mannose phosphate isomerase##AK292374|MPI|4351|mannose phosphate isomerase##BC017351|MPI|4351|mannose phosphate isomerase##NM_002435|MPI|4351|mannose phosphate isomerase##X76057|MPI|4351|mannose phosphate isomerase##AK025373|C15orf17|57184|chromosome 15 open reading frame 17	0.06259	
chr6	26197521	26197642	reg1000784.p1	6.631	+	CU689152 DQ892795 DQ896042 AB590086 BC033095 TSC_hg19_v1_chr6_-_26197515	-85	-	AB528805 BC128104 BC128105 BC143045 NM_003539 TSC_hg19_v1_chr6_-_26189339	-8259	-	BC101748 BC101750 EU446967 NM_003523	-13591	+	BC031333 NM_003530 BC128035 CR541970 CR541999 EU446963 NM_021065 BC093807 BC093809 AK312127 AK316611	1898	-	TSC_hg19_v1_chr6_+_26199747 BC056264 BC096120 BC096123 NM_003522	2168	+	AK312153 TSC_hg19_v1_chr6_+_26204837 BC012587 BC050615 BC056868 AB463741 EU446978 CR542180 CR542189 NM_003545	7244	+	DQ892795|HIST1H3D|8351|histone cluster 1, H3d##DQ896042|HIST1H3D|8351|histone cluster 1, H3d##BC128104|HIST1H4D|8360|histone cluster 1, H4d##BC143045|HIST1H4D|8360|histone cluster 1, H4d##NM_003539|HIST1H4D|8360|histone cluster 1, H4d##BC101748|HIST1H2BE|8344|histone cluster 1, H2be##BC101750|HIST1H2BE|8344|histone cluster 1, H2be##EU446967|HIST1H2BE|8344|histone cluster 1, H2be##NM_003523|HIST1H2BE|8344|histone cluster 1, H2be##BC031333|HIST1H3D|8351|histone cluster 1, H3d##NM_003530|HIST1H3D|8351|histone cluster 1, H3d##BC128035|HIST1H2AD|3013|histone cluster 1, H2ad##CR541970|HIST1H2AD|3013|histone cluster 1, H2ad##CR541999|HIST1H2AD|3013|histone cluster 1, H2ad##EU446963|HIST1H2AD|3013|histone cluster 1, H2ad##NM_021065|HIST1H2AD|3013|histone cluster 1, H2ad##BC093807|HIST1H2AD|3013|histone cluster 1, H2ad##BC093809|HIST1H2AD|3013|histone cluster 1, H2ad##AK312127|HIST1H2AD|3013|histone cluster 1, H2ad##AK316611|HIST1H3D|8351|histone cluster 1, H3d##BC056264|HIST1H2BF|8343|histone cluster 1, H2bf##BC096120|HIST1H2BF|8343|histone cluster 1, H2bf##BC096123|HIST1H2BF|8343|histone cluster 1, H2bf##NM_003522|HIST1H2BF|8343|histone cluster 1, H2bf##BC012587|HIST1H4E|8367|histone cluster 1, H4e##BC050615|HIST1H4E|8367|histone cluster 1, H4e##BC056868|HIST1H4E|8367|histone cluster 1, H4e##EU446978|HIST1H4E|8367|histone cluster 1, H4e##CR542180|HIST1H4E|8367|histone cluster 1, H4e##CR542189|HIST1H4E|8367|histone cluster 1, H4e##NM_003545|HIST1H4E|8367|histone cluster 1, H4e	0.95213	denovo_WM_21:-17:0.952
chr17_ctg5_hap1	391473	391597	reg1000694.p1	6.626	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.097033	
chr19	17414232	17414356	reg1000788.p1	6.623	+	BC020173 BC039087 TSC_hg19_v1_chr19_-_17414209 BC007895 AK225140 AK315366 AK021805 AK225340 AK298251 NM_024527	-112	-	AK303628 NM_152363	-21841	+	TSC_hg19_v1_chr19_+_17378266 AK000578 BC091491 BC000788	-36000	+	BC021801 NM_023937 TSC_hg19_v1_chr19_+_17416677 AB049652 BC000071	2297	+	TSC_hg19_v1_chr19_+_17420345 NM_024050	5987	+	TSC_hg19_v1_chr19_+_17420358 AY563006 DQ090952 BC000615	6064	+	BC020173|ABHD8|79575|abhydrolase domain containing 8##BC039087|ABHD8|79575|abhydrolase domain containing 8##BC007895|ABHD8|79575|abhydrolase domain containing 8##AK225140|ABHD8|79575|abhydrolase domain containing 8##AK315366|ABHD8|79575|abhydrolase domain containing 8##AK021805|ABHD8|79575|abhydrolase domain containing 8##AK225340|ABHD8|79575|abhydrolase domain containing 8##AK298251|ABHD8|79575|abhydrolase domain containing 8##NM_024527|ABHD8|79575|abhydrolase domain containing 8##AK303628|ANKLE1|126549|ankyrin repeat and LEM domain containing 1##NM_152363|ANKLE1|126549|ankyrin repeat and LEM domain containing 1##AK000578|BABAM1|29086|BRISC and BRCA1 A complex member 1##BC091491|BABAM1|29086|BRISC and BRCA1 A complex member 1##BC000788|BABAM1|29086|BRISC and BRCA1 A complex member 1##BC021801|MRPL34|64981|mitochondrial ribosomal protein L34##NM_023937|MRPL34|64981|mitochondrial ribosomal protein L34##AB049652|MRPL34|64981|mitochondrial ribosomal protein L34##BC000071|MRPL34|64981|mitochondrial ribosomal protein L34##NM_024050|DDA1|79016|DET1 and DDB1 associated 1##AY563006|DDA1|79016|DET1 and DDB1 associated 1##DQ090952|DDA1|79016|DET1 and DDB1 associated 1##BC000615|DDA1|79016|DET1 and DDB1 associated 1	0.136829	
chr7	99699057	99699182	reg1000687.p1	6.621	+	TSC_hg19_v1_chr7_-_99699034 D55716	-82	-	TSC_hg19_v1_chr7_-_99699015 BC013375 D86748 AK096959 AK314575	-108	-	CU680582 DQ895947 EU176445 TSC_hg19_v1_chr7_-_99698991 BC009398 AK293172 AK226175	-165	-	NM_004722 AF020796 Y08387 BC018705 AF155158 AK304489 BC012023 AK315782 CU676282 AK296651 AK293590 BX640759	189	+	NM_005916 TSC_hg19_v1_chr7_-_99699517	377	-	TSC_hg19_v1_chr7_-_99716928 AK097781	17787	-	D55716|MCM7|4176|minichromosome maintenance complex component 7##BC013375|MCM7|4176|minichromosome maintenance complex component 7##D86748|MCM7|4176|minichromosome maintenance complex component 7##AK096959|MCM7|4176|minichromosome maintenance complex component 7##AK314575|MCM7|4176|minichromosome maintenance complex component 7##DQ895947|MCM7|4176|minichromosome maintenance complex component 7##EU176445|MCM7|4176|minichromosome maintenance complex component 7##BC009398|MCM7|4176|minichromosome maintenance complex component 7##AK293172|MCM7|4176|minichromosome maintenance complex component 7##AK226175|MCM7|4176|minichromosome maintenance complex component 7##NM_004722|AP4M1|9179|adaptor-related protein complex 4, mu 1 subunit##AF020796|AP4M1|9179|adaptor-related protein complex 4, mu 1 subunit##Y08387|AP4M1|9179|adaptor-related protein complex 4, mu 1 subunit##BC018705|AP4M1|9179|adaptor-related protein complex 4, mu 1 subunit##AF155158|AP4M1|9179|adaptor-related protein complex 4, mu 1 subunit##AK304489|AP4M1|9179|adaptor-related protein complex 4, mu 1 subunit##BC012023|AP4M1|9179|adaptor-related protein complex 4, mu 1 subunit##AK315782|AP4M1|9179|adaptor-related protein complex 4, mu 1 subunit##AK296651|AP4M1|9179|adaptor-related protein complex 4, mu 1 subunit##AK293590|AP4M1|9179|adaptor-related protein complex 4, mu 1 subunit##BX640759|AP4M1|9179|adaptor-related protein complex 4, mu 1 subunit##NM_005916|MCM7|4176|minichromosome maintenance complex component 7##AK097781|TAF6|6878|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa	0.94149	denovo_WM_21:-4:0.776
chr17	41323062	41323216	reg1000683.p1	6.616	+	TSC_hg19_v1_chr17_+_41322538 D30756 NM_031862 AF227189 NM_031858	-646	+	TSC_hg19_v1_chr17_-_41322317 AK293762 AK311131	-806	-	CR936675 U88573 TSC_hg19_v1_chr17_+_41277680 BC107773 BC022065 BC034248 AK310868	-45472	+	TSC_hg19_v1_chr17_+_41323230 AK299328 AK290005 AK297425 BC012591 X76952 NM_005899 BC009808 AY450308	83	+	TSC_hg19_v1_chr17_+_41363905 AK056132 AK290387 AK299974 AK301571 NM_145041	40740	+	AL832479 TSC_hg19_v1_chr17_-_41465694 AK123585 AK311685	142551	-	D30756|NBR1|4077|neighbor of BRCA1 gene 1##NM_031862|NBR1|4077|neighbor of BRCA1 gene 1##AF227189|NBR1|4077|neighbor of BRCA1 gene 1##NM_031858|NBR1|4077|neighbor of BRCA1 gene 1##AK293762|BRCA1|672|breast cancer 1, early onset##CR936675|NBR2|10230|neighbor of BRCA1 gene 2 (non-protein coding)##BC107773|NBR2|10230|neighbor of BRCA1 gene 2 (non-protein coding)##BC022065|NBR2|10230|neighbor of BRCA1 gene 2 (non-protein coding)##BC034248|NBR2|10230|neighbor of BRCA1 gene 2 (non-protein coding)##AK299328|NBR1|4077|neighbor of BRCA1 gene 1##AK290005|NBR1|4077|neighbor of BRCA1 gene 1##AK297425|NBR1|4077|neighbor of BRCA1 gene 1##X76952|NBR1|4077|neighbor of BRCA1 gene 1##NM_005899|NBR1|4077|neighbor of BRCA1 gene 1##BC009808|NBR1|4077|neighbor of BRCA1 gene 1##AY450308|NBR1|4077|neighbor of BRCA1 gene 1##AK056132|TMEM106A|113277|transmembrane protein 106A##AK290387|TMEM106A|113277|transmembrane protein 106A##AK299974|TMEM106A|113277|transmembrane protein 106A##AK301571|TMEM106A|113277|transmembrane protein 106A##NM_145041|TMEM106A|113277|transmembrane protein 106A##AL832479|LOC100130581|100130581|uncharacterized LOC100130581##AK123585|LOC100130581|100130581|uncharacterized LOC100130581##AK311685|LOC100130581|100130581|uncharacterized LOC100130581	0.057137	
chr9	91925952	91926076	reg1000600.p1	6.598	+	BC026314 NM_016848 TSC_hg19_v1_chr9_-_91793734	-132304	-	DQ896663 TSC_hg19_v1_chr9_-_91793449 D84361	-132550	-	TSC_hg19_v1_chr9_+_91606382 AK312798 BC060827 NM_005226	-319644	+	TSC_hg19_v1_chr9_+_91926112 NM_001827 X54942 BC006458 AB527990 BT006630 CR407630 CR542118	144	+	TSC_hg19_v1_chr9_+_91933425 AK302852 NM_024077 AK090608 AK290182 AX746532 BC036109 AL136881 BC001189 AF380995 BC099900 BC068466	7404	+	BC054500 NM_001142287 NM_006378	168596	-	BC026314|SHC3|53358|SHC (Src homology 2 domain containing) transforming protein 3##NM_016848|SHC3|53358|SHC (Src homology 2 domain containing) transforming protein 3##DQ896663|SHC3|53358|SHC (Src homology 2 domain containing) transforming protein 3##D84361|SHC3|53358|SHC (Src homology 2 domain containing) transforming protein 3##AK312798|S1PR3|1903|sphingosine-1-phosphate receptor 3##BC060827|S1PR3|1903|sphingosine-1-phosphate receptor 3##NM_005226|S1PR3|1903|sphingosine-1-phosphate receptor 3##NM_001827|CKS2|1164|CDC28 protein kinase regulatory subunit 2##X54942|CKS2|1164|CDC28 protein kinase regulatory subunit 2##BC006458|CKS2|1164|CDC28 protein kinase regulatory subunit 2##BT006630|CKS2|1164|CDC28 protein kinase regulatory subunit 2##CR407630|CKS2|1164|CDC28 protein kinase regulatory subunit 2##CR542118|CKS2|1164|CDC28 protein kinase regulatory subunit 2##AK302852|SECISBP2|79048|SECIS binding protein 2##NM_024077|SECISBP2|79048|SECIS binding protein 2##AK090608|SECISBP2|79048|SECIS binding protein 2##AK290182|SECISBP2|79048|SECIS binding protein 2##BC036109|SECISBP2|79048|SECIS binding protein 2##AL136881|SECISBP2|79048|SECIS binding protein 2##BC001189|SECISBP2|79048|SECIS binding protein 2##AF380995|SECISBP2|79048|SECIS binding protein 2##BC099900|SECISBP2|79048|SECIS binding protein 2##BC054500|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##NM_001142287|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##NM_006378|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	1.705382	denovo_WM_21:47:0.630	denovo_WM_21:-51:0.994
chr16	2955832	2955953	reg1000668.p2	6.594	+	NM_001142499 NM_001142500 NM_138439 TSC_hg19_v1_chr16_+_2933215 BC014089	-22636	+	CU679465 AB010779 AF321182 BC009726 AY358396 NM_022119	-47755	-	NM_145252 AY359021 JN411265 BC009722 AB528168 AM392915 AM393869 EF067313 AK311810	-75654	+	TSC_hg19_v1_chr16_+_2961983 BC028572 NM_020912 NM_032296	6072	+	TSC_hg19_v1_chr16_+_2961994 AB046772	6105	+	BC009383 NM_001253725 NM_001253726 NM_024507 NM_172229 AK075033 AK301953 AK027669 BC003533 AK223422 AB086355 AB086356 AB086357 AB086405 DQ896447	58476	+	NM_001142499|FLYWCH2|114984|FLYWCH family member 2##NM_001142500|FLYWCH2|114984|FLYWCH family member 2##NM_138439|FLYWCH2|114984|FLYWCH family member 2##BC014089|FLYWCH2|114984|FLYWCH family member 2##AB010779|PRSS22|64063|protease, serine, 22##AF321182|PRSS22|64063|protease, serine, 22##BC009726|PRSS22|64063|protease, serine, 22##AY358396|PRSS22|64063|protease, serine, 22##NM_022119|PRSS22|64063|protease, serine, 22##NM_145252|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##AY359021|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##JN411265|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##BC009722|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##AM392915|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##AM393869|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##EF067313|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##AK311810|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##BC028572|FLYWCH1|84256|FLYWCH-type zinc finger 1##NM_020912|FLYWCH1|84256|FLYWCH-type zinc finger 1##NM_032296|FLYWCH1|84256|FLYWCH-type zinc finger 1##AB046772|FLYWCH1|84256|FLYWCH-type zinc finger 1##BC009383|KREMEN2|79412|kringle containing transmembrane protein 2##NM_001253725|KREMEN2|79412|kringle containing transmembrane protein 2##NM_001253726|KREMEN2|79412|kringle containing transmembrane protein 2##NM_024507|KREMEN2|79412|kringle containing transmembrane protein 2##NM_172229|KREMEN2|79412|kringle containing transmembrane protein 2##AK075033|KREMEN2|79412|kringle containing transmembrane protein 2##AK301953|KREMEN2|79412|kringle containing transmembrane protein 2##AK027669|KREMEN2|79412|kringle containing transmembrane protein 2##BC003533|KREMEN2|79412|kringle containing transmembrane protein 2##AK223422|KREMEN2|79412|kringle containing transmembrane protein 2##AB086355|KREMEN2|79412|kringle containing transmembrane protein 2##AB086356|KREMEN2|79412|kringle containing transmembrane protein 2##AB086357|KREMEN2|79412|kringle containing transmembrane protein 2##AB086405|KREMEN2|79412|kringle containing transmembrane protein 2##DQ896447|KREMEN2|79412|kringle containing transmembrane protein 2	4.341157	denovo_WM_21:-4:0.720	denovo_WM_21:-23:0.656	denovo_WM_21:32:0.859	denovo_WM_21:-41:0.751	denovo_WM_21:-65:0.656	denovo_WM_21:86:0.537
chr1	22699394	22699508	reg1000757.p1	6.593	+	AY009398 BT020125 AB590593 AB061675 AY358947 AF316543 NM_030761 BC057781	-229940	-	TSC_hg19_v1_chr1_+_22379812 AL121737	-319646	+	NM_001039802 NM_001791 NM_044472 TSC_hg19_v1_chr1_+_22379201 BC018266 AL121734 AL121735 BC002711 AL121736 AK311375 AK316449 AK303994 AK297465 M57298	-320281	+	AK091019 AK095273 AX746732 NM_001083621 NM_014870 TSC_hg19_v1_chr1_+_22778343	78893	+	TSC_hg19_v1_chr1_+_22778350 AB007947 BC114607	78975	+	TSC_hg19_v1_chr1_+_22889990 BC072417 NM_001006943 NM_020526 BC038796 AB527136	190605	+	AY009398|WNT4|54361|wingless-type MMTV integration site family, member 4##BT020125|WNT4|54361|wingless-type MMTV integration site family, member 4##AB061675|WNT4|54361|wingless-type MMTV integration site family, member 4##AY358947|WNT4|54361|wingless-type MMTV integration site family, member 4##AF316543|WNT4|54361|wingless-type MMTV integration site family, member 4##NM_030761|WNT4|54361|wingless-type MMTV integration site family, member 4##BC057781|WNT4|54361|wingless-type MMTV integration site family, member 4##AL121737|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##NM_001039802|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##NM_001791|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##NM_044472|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##BC018266|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AL121734|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AL121735|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##BC002711|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AL121736|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AK311375|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AK316449|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AK303994|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AK297465|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##M57298|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AK091019|ZBTB40|9923|zinc finger and BTB domain containing 40##AK095273|ZBTB40|9923|zinc finger and BTB domain containing 40##NM_001083621|ZBTB40|9923|zinc finger and BTB domain containing 40##NM_014870|ZBTB40|9923|zinc finger and BTB domain containing 40##AB007947|ZBTB40|9923|zinc finger and BTB domain containing 40##BC114607|ZBTB40|9923|zinc finger and BTB domain containing 40##BC072417|EPHA8|2046|EPH receptor A8##NM_001006943|EPHA8|2046|EPH receptor A8##NM_020526|EPHA8|2046|EPH receptor A8##BC038796|EPHA8|2046|EPH receptor A8	0.0	
chr6	80714271	80714380	reg1000695.p1	6.591	+	TSC_hg19_v1_chr6_-_80656870 CU691582 DQ891229 AF277094 BC038506 AY037298 AK310625 AK312511 AK055277 DQ426871 NM_022726	-57233	-	NM_001243308	-134189	-	TSC_hg19_v1_chr6_+_80341019 AF340151 NM_031469 BC109043 BC109044 AK311757 BC040489 AK074506 BC052987 BC060799 BC070059 AJ297972	-373251	+	NM_001166691 NM_003318 TSC_hg19_v1_chr6_+_80714370 AX775733 BC032858 BC000633 AK292460	27	+	TSC_hg19_v1_chr6_+_80714390 AK315696	74	+	TSC_hg19_v1_chr6_+_80816367 NM_000056 NM_183050 AK304353 U50708	102002	+	DQ891229|ELOVL4|6785|ELOVL fatty acid elongase 4##AF277094|ELOVL4|6785|ELOVL fatty acid elongase 4##BC038506|ELOVL4|6785|ELOVL fatty acid elongase 4##AY037298|ELOVL4|6785|ELOVL fatty acid elongase 4##AK310625|ELOVL4|6785|ELOVL fatty acid elongase 4##AK312511|ELOVL4|6785|ELOVL fatty acid elongase 4##AK055277|ELOVL4|6785|ELOVL fatty acid elongase 4##DQ426871|ELOVL4|6785|ELOVL fatty acid elongase 4##NM_022726|ELOVL4|6785|ELOVL fatty acid elongase 4##NM_001243308|C6orf7|89758|chromosome 6 open reading frame 7##AF340151|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##NM_031469|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC109043|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC109044|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##AK311757|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC040489|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##AK074506|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC052987|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC060799|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC070059|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##AJ297972|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##NM_001166691|TTK|7272|TTK protein kinase##NM_003318|TTK|7272|TTK protein kinase##AX775733|TTK|7272|TTK protein kinase##BC032858|TTK|7272|TTK protein kinase##BC000633|TTK|7272|TTK protein kinase##AK292460|TTK|7272|TTK protein kinase##AK315696|TTK|7272|TTK protein kinase##NM_000056|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##NM_183050|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##AK304353|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##U50708|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide	1.475301	denovo_WM_21:8:0.912	denovo_WM_21:-28:0.564
chr16	57220002	57220135	reg1000512.p1	6.587	+	TSC_hg19_v1_chr16_-_57219952 NM_024946	-105	-	AK025452 TSC_hg19_v1_chr16_-_57219950	-118	-	AK023291 TSC_hg19_v1_chr16_-_57219949 AF212249 AF271785 BC020536	-156	-	TSC_hg19_v1_chr16_+_57220244 AK172845 BC013173 NM_133368 AK027549 AB075852 AY358548	245	+	TSC_hg19_v1_chr16_+_57279154 AK075050 NM_012106 BC003087 AK311018 AK298758	59065	+	CU678172 BC002760 TSC_hg19_v1_chr16_-_57318556 AK289599 AF137386	98443	-	NM_024946|FAM192A|80011|family with sequence similarity 192, member A##AK025452|FAM192A|80011|family with sequence similarity 192, member A##AK023291|FAM192A|80011|family with sequence similarity 192, member A##AF212249|FAM192A|80011|family with sequence similarity 192, member A##AF271785|FAM192A|80011|family with sequence similarity 192, member A##BC020536|FAM192A|80011|family with sequence similarity 192, member A##AK172845|RSPRY1|89970|ring finger and SPRY domain containing 1##BC013173|RSPRY1|89970|ring finger and SPRY domain containing 1##NM_133368|RSPRY1|89970|ring finger and SPRY domain containing 1##AK027549|RSPRY1|89970|ring finger and SPRY domain containing 1##AB075852|RSPRY1|89970|ring finger and SPRY domain containing 1##AY358548|RSPRY1|89970|ring finger and SPRY domain containing 1##AK075050|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##NM_012106|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##BC003087|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##AK311018|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##AK298758|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##BC002760|PLLP|51090|plasmolipin##AK289599|PLLP|51090|plasmolipin##AF137386|PLLP|51090|plasmolipin	0.219004	denovo_WM_21:83:0.219
chr2	46727541	46727660	reg1000756.p1	6.582	+	NM_001145051	-20897	+	U81984 TSC_hg19_v1_chr2_+_46524905 U51626 AB384937	-202625	+	TSC_hg19_v1_chr2_+_46524545 NM_001430 BC051338	-203009	+	BC034808 NM_080653	19495	-	TSC_hg19_v1_chr2_+_46769874 NM_012249 AK095329	42249	+	TSC_hg19_v1_chr2_+_46769905 BC056154 BC070485 BC065291 BC093805 BC101806 AF498976 M31470 AB528045	42438	+	NM_001145051|LOC388946|388946|transmembrane protein ENSP00000343375##U81984|EPAS1|2034|endothelial PAS domain protein 1##U51626|EPAS1|2034|endothelial PAS domain protein 1##NM_001430|EPAS1|2034|endothelial PAS domain protein 1##BC051338|EPAS1|2034|endothelial PAS domain protein 1##BC034808|ATP6V1E2|90423|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2##NM_080653|ATP6V1E2|90423|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2##NM_012249|RHOQ|23433|ras homolog gene family, member Q##AK095329|RHOQ|23433|ras homolog gene family, member Q##BC056154|RHOQ|23433|ras homolog gene family, member Q##BC070485|RHOQ|23433|ras homolog gene family, member Q##BC065291|RHOQ|23433|ras homolog gene family, member Q##BC093805|RHOQ|23433|ras homolog gene family, member Q##BC101806|RHOQ|23433|ras homolog gene family, member Q##AF498976|RHOQ|23433|ras homolog gene family, member Q##M31470|RHOQ|23433|ras homolog gene family, member Q	0.0	
chr19	9945832	9945961	reg1000635.p2	6.579	+	TSC_hg19_v1_chr19_+_9938597 AK309258 AF313915 BC007053 BC110839	-7283	+	NM_001048241 TSC_hg19_v1_chr19_+_9938580 AK128885 AK311889 NM_024292	-7329	+	BC001586 AK000195 NM_017703 TSC_hg19_v1_chr19_-_9929754 AK093760 AK027004	-16171	-	NM_006221 TSC_hg19_v1_chr19_+_9946010 AK097558 AK291074 BC002899 U49070 AF086512 AB385559 BT019331 CR407654 CU678280 DQ892978 DQ896226	55	+	BC031971 TSC_hg19_v1_chr19_+_9946188	268	+	TSC_hg19_v1_chr19_-_10047187 CU679906 DQ891083 DQ894265 AF131839 BC011361 NM_058164	101228	-	AK309258|UBL5|59286|ubiquitin-like 5##AF313915|UBL5|59286|ubiquitin-like 5##BC007053|UBL5|59286|ubiquitin-like 5##BC110839|UBL5|59286|ubiquitin-like 5##NM_001048241|UBL5|59286|ubiquitin-like 5##AK128885|UBL5|59286|ubiquitin-like 5##AK311889|UBL5|59286|ubiquitin-like 5##NM_024292|UBL5|59286|ubiquitin-like 5##BC001586|FBXL12|54850|F-box and leucine-rich repeat protein 12##AK000195|FBXL12|54850|F-box and leucine-rich repeat protein 12##NM_017703|FBXL12|54850|F-box and leucine-rich repeat protein 12##AK093760|FBXL12|54850|F-box and leucine-rich repeat protein 12##AK027004|FBXL12|54850|F-box and leucine-rich repeat protein 12##NM_006221|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AK097558|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AK291074|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##BC002899|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##U49070|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AF086512|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##BT019331|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##CR407654|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##DQ892978|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##DQ896226|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##BC031971|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##DQ891083|OLFM2|93145|olfactomedin 2##DQ894265|OLFM2|93145|olfactomedin 2##AF131839|OLFM2|93145|olfactomedin 2##BC011361|OLFM2|93145|olfactomedin 2##NM_058164|OLFM2|93145|olfactomedin 2	1.052724	denovo_WM_21:48:0.828
chr11	58874526	58874640	reg1000836.p1	6.575	+	AK091965 AX747281 DQ084381 NM_001220496 NM_080661 AK055818	-163831	+	NM_001220494 AK300479 BC008353	-179446	+	BC021682 NM_145016 BC016789	-262595	-	TSC_hg19_v1_chr11_+_58874641 BC062456 NM_001142703 NM_001142704 NM_198947 BC005998 AK304258 AY457926 AK303520	79	+	TSC_hg19_v1_chr11_-_58910222 AK124475 BC028022	35660	-	TSC_hg19_v1_chr11_+_58910331 AK092237 AX747422 NM_001142519 NM_001142520 NM_001142521	35727	+	AK091965|GLYATL1|92292|glycine-N-acyltransferase-like 1##DQ084381|GLYATL1|92292|glycine-N-acyltransferase-like 1##NM_001220496|GLYATL1|92292|glycine-N-acyltransferase-like 1##NM_080661|GLYATL1|92292|glycine-N-acyltransferase-like 1##AK055818|GLYATL1|92292|glycine-N-acyltransferase-like 1##NM_001220494|GLYATL1|92292|glycine-N-acyltransferase-like 1##AK300479|GLYATL1|92292|glycine-N-acyltransferase-like 1##BC008353|GLYATL1|92292|glycine-N-acyltransferase-like 1##BC021682|GLYATL2|219970|glycine-N-acyltransferase-like 2##NM_145016|GLYATL2|219970|glycine-N-acyltransferase-like 2##BC016789|GLYATL2|219970|glycine-N-acyltransferase-like 2##BC062456|FAM111B|374393|family with sequence similarity 111, member B##NM_001142703|FAM111B|374393|family with sequence similarity 111, member B##NM_001142704|FAM111B|374393|family with sequence similarity 111, member B##NM_198947|FAM111B|374393|family with sequence similarity 111, member B##BC005998|FAM111B|374393|family with sequence similarity 111, member B##AK304258|FAM111B|374393|family with sequence similarity 111, member B##AY457926|FAM111B|374393|family with sequence similarity 111, member B##AK303520|FAM111B|374393|family with sequence similarity 111, member B##AK092237|FAM111A|63901|family with sequence similarity 111, member A##NM_001142519|FAM111A|63901|family with sequence similarity 111, member A##NM_001142520|FAM111A|63901|family with sequence similarity 111, member A##NM_001142521|FAM111A|63901|family with sequence similarity 111, member A	1.31841	denovo_WM_21:16:0.347	denovo_WM_21:-18:0.960
chr1	202311132	202311284	reg1000852.p2	6.572	+	TSC_hg19_v1_chr1_-_202311082 AF161499 NM_014176	-122	-	AK000504 AF160215 BC004152 BC019284 TSC_hg19_v1_chr1_-_202311065	-152	-	AF190501 NM_001017404	-127926	+	TSC_hg19_v1_chr1_+_202317826 AK307591 NM_001167857 NM_001167858 NM_002481 AB003062 AF324888 BC144699 BC110907 BC034430 BC071166	6665	+	AB050641 AB050642 NM_032103 NM_032104	120662	+	AB588820 NM_001197131 TSC_hg19_v1_chr1_+_202509319	198072	+	AF161499|UBE2T|29089|ubiquitin-conjugating enzyme E2T (putative)##NM_014176|UBE2T|29089|ubiquitin-conjugating enzyme E2T (putative)##AK000504|UBE2T|29089|ubiquitin-conjugating enzyme E2T (putative)##AF160215|UBE2T|29089|ubiquitin-conjugating enzyme E2T (putative)##BC004152|UBE2T|29089|ubiquitin-conjugating enzyme E2T (putative)##BC019284|UBE2T|29089|ubiquitin-conjugating enzyme E2T (putative)##AF190501|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##NM_001017404|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##AK307591|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_001167857|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_001167858|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_002481|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##AB003062|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##AF324888|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##BC144699|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##BC110907|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##BC034430|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##BC071166|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##AB050641|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##AB050642|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_032103|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_032104|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##AB588820|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_001197131|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B	1.122378	denovo_WM_21:-23:0.227	denovo_WM_21:-74:0.895
chr16	27386535	27386684	reg1000758.p2	6.572	+	TSC_hg19_v1_chr16_+_27341339 BC136365 BC151131	-45265	+	TSC_hg19_v1_chr16_+_27325301 BC110343 AK223591 X52425	-61291	+	TSC_hg19_v1_chr16_+_27325254 AK314863 NM_000418 NM_001008699 AK303255	-61355	+	AK292663 NM_181078 NM_181079 AK312825	26878	+	NM_021798 AY358826 AF254067	51995	+	TSC_hg19_v1_chr16_-_27561218 BX648143	174609	-	BC136365|IL4R|3566|interleukin 4 receptor##BC151131|IL4R|3566|interleukin 4 receptor##BC110343|IL4R|3566|interleukin 4 receptor##AK223591|IL4R|3566|interleukin 4 receptor##X52425|IL4R|3566|interleukin 4 receptor##AK314863|IL4R|3566|interleukin 4 receptor##NM_000418|IL4R|3566|interleukin 4 receptor##NM_001008699|IL4R|3566|interleukin 4 receptor##AK303255|IL4R|3566|interleukin 4 receptor##AK292663|IL21R|50615|interleukin 21 receptor##NM_181078|IL21R|50615|interleukin 21 receptor##NM_181079|IL21R|50615|interleukin 21 receptor##AK312825|IL21R|50615|interleukin 21 receptor##NM_021798|IL21R|50615|interleukin 21 receptor##AY358826|IL21R|50615|interleukin 21 receptor##AF254067|IL21R|50615|interleukin 21 receptor##BX648143|GTF3C1|2975|general transcription factor IIIC, polypeptide 1, alpha 220kDa	1.984997	denovo_WM_21:26:0.963	denovo_WM_21:-38:0.988
chr7	2883994	2884131	reg1000503.p1	6.571	+	AK295830 AF493901 L01694 AB463060 TSC_hg19_v1_chr7_-_2883943 NM_007353 BC087537 BC111464	-254	-	AK289723 AB075830 BC146753 NM_133463	-164904	+	TSC_hg19_v1_chr7_+_2671642 BC131824 AB162931	-212359	+	TSC_hg19_v1_chr7_-_3083346 AF322641 AK074049 NM_032415 AK097139	199400	-	TSC_hg19_v1_chr7_+_3340924 AY310398 NM_152744	456937	+	TSC_hg19_v1_chr7_+_4721925 NM_001037165	1837776	+	AK295830|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##AF493901|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##L01694|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##NM_007353|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##BC087537|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##BC111464|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##AK289723|AMZ1|155185|archaelysin family metallopeptidase 1##AB075830|AMZ1|155185|archaelysin family metallopeptidase 1##BC146753|AMZ1|155185|archaelysin family metallopeptidase 1##NM_133463|AMZ1|155185|archaelysin family metallopeptidase 1##BC131824|TTYH3|80727|tweety homolog 3 (Drosophila)##AB162931|TTYH3|80727|tweety homolog 3 (Drosophila)##AF322641|CARD11|84433|caspase recruitment domain family, member 11##AK074049|CARD11|84433|caspase recruitment domain family, member 11##NM_032415|CARD11|84433|caspase recruitment domain family, member 11##AK097139|CARD11|84433|caspase recruitment domain family, member 11##AY310398|SDK1|221935|sidekick cell adhesion molecule 1##NM_152744|SDK1|221935|sidekick cell adhesion molecule 1##NM_001037165|FOXK1|221937|forkhead box K1	1.833232	denovo_WM_21:-6:0.923	denovo_WM_21:90:0.910
chr22	42475962	42476099	reg1000713.p1	6.569	+	TSC_hg19_v1_chr22_+_42475732 CR456453 CU692896 CU013003 CU013291	-276	+	TSC_hg19_v1_chr22_+_42475703 NM_033318 BC024237 AK312142 AL449243	-336	+	TSC_hg19_v1_chr22_+_42470261 BX648402 NM_001002034	-5775	+	TSC_hg19_v1_chr22_-_42486764 CR456714 CR541997 CU678184 DQ892966 DQ896214 BC002772 AF047182 AK316562 AK291874	10722	-	TSC_hg19_v1_chr22_-_42486777 AB528478 CU013129 CU013417 CR456529 NM_002490	10796	-	TSC_hg19_v1_chr22_+_42486980 AK123630 BC039542	10996	+	CR456453|C22orf32|91689|chromosome 22 open reading frame 32##NM_033318|C22orf32|91689|chromosome 22 open reading frame 32##BC024237|C22orf32|91689|chromosome 22 open reading frame 32##AK312142|C22orf32|91689|chromosome 22 open reading frame 32##AL449243|C22orf32|91689|chromosome 22 open reading frame 32##BX648402|FAM109B|150368|family with sequence similarity 109, member B##NM_001002034|FAM109B|150368|family with sequence similarity 109, member B##CR456714|NDUFA6|4700|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa##CR541997|NDUFA6|4700|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa##DQ892966|NDUFA6|4700|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa##DQ896214|NDUFA6|4700|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa##BC002772|NDUFA6|4700|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa##AF047182|NDUFA6|4700|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa##AK316562|NDUFA6|4700|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa##AK291874|NDUFA6|4700|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa##CU013129|NDUFA6|4700|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa##CU013417|NDUFA6|4700|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa##CR456529|NDUFA6|4700|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa##NM_002490|NDUFA6|4700|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa##AK123630|LOC100132273|100132273|uncharacterized LOC100132273##BC039542|LOC100132273|100132273|uncharacterized LOC100132273	0.623026	denovo_WM_21:22:0.560
chr19	58427977	58428098	reg1000858.p1	6.568	+	TSC_hg19_v1_chr19_-_58427961 BC025783 AK293789 BC103757 NM_152475	-65	-	BC056684 AF086563 AK022663 TSC_hg19_v1_chr19_-_58400401 AK300483 NM_001144989	-27673	-	TSC_hg19_v1_chr19_+_58361226 AK027616 BC126237 BC126239 BC144112 BC144113 AB464407	-66725	+	AK056113 AY695825 NM_133460 AK304632 AK293723	18709	-	TSC_hg19_v1_chr19_-_58459075 BC001438 AK314094 NM_005773	31025	-	BC033933 NM_152474	57864	-	BC025783|ZNF417|147687|zinc finger protein 417##AK293789|ZNF417|147687|zinc finger protein 417##BC103757|ZNF417|147687|zinc finger protein 417##NM_152475|ZNF417|147687|zinc finger protein 417##BC056684|ZNF814|730051|zinc finger protein 814##AF086563|ZNF814|730051|zinc finger protein 814##AK022663|ZNF814|730051|zinc finger protein 814##AK300483|ZNF814|730051|zinc finger protein 814##NM_001144989|ZNF814|730051|zinc finger protein 814##AK027616|ZNF587|84914|zinc finger protein 587##BC126237|ZNF587|84914|zinc finger protein 587##BC126239|ZNF587|84914|zinc finger protein 587##BC144112|ZNF587|84914|zinc finger protein 587##BC144113|ZNF587|84914|zinc finger protein 587##AK056113|ZNF418|147686|zinc finger protein 418##AY695825|ZNF418|147686|zinc finger protein 418##NM_133460|ZNF418|147686|zinc finger protein 418##AK304632|ZNF418|147686|zinc finger protein 418##AK293723|ZNF418|147686|zinc finger protein 418##BC001438|ZNF256|10172|zinc finger protein 256##AK314094|ZNF256|10172|zinc finger protein 256##NM_005773|ZNF256|10172|zinc finger protein 256##BC033933|C19orf18|147685|chromosome 19 open reading frame 18##NM_152474|C19orf18|147685|chromosome 19 open reading frame 18	0.9242	denovo_WM_21:-9:0.924
chr4	7069812	7069944	reg1000646.p1	6.567	+	TSC_hg19_v1_chr4_-_7069801 AF087896	-77	-	AF298592 DQ891523 DQ894713 TSC_hg19_v1_chr4_-_7069792 AK098475 AK301695 AK312882 BC024242 NM_025196	-101	-	TSC_hg19_v1_chr4_+_7045222 AK093974 AX748390 AB590997	-24614	+	TSC_hg19_v1_chr4_+_7194317 NM_020777 AF286190	124517	+	BC034552 BC048325 TSC_hg19_v1_chr4_-_7436631 BC068579 DQ991252 NM_001085382	366778	-	TSC_hg19_v1_chr4_-_7941589 AK297631 AK290807 NM_001134647 NM_198595	871510	-	AF087896|GRPEL1|80273|GrpE-like 1, mitochondrial (E. coli)##AF298592|GRPEL1|80273|GrpE-like 1, mitochondrial (E. coli)##DQ891523|GRPEL1|80273|GrpE-like 1, mitochondrial (E. coli)##DQ894713|GRPEL1|80273|GrpE-like 1, mitochondrial (E. coli)##AK098475|GRPEL1|80273|GrpE-like 1, mitochondrial (E. coli)##AK301695|GRPEL1|80273|GrpE-like 1, mitochondrial (E. coli)##AK312882|GRPEL1|80273|GrpE-like 1, mitochondrial (E. coli)##BC024242|GRPEL1|80273|GrpE-like 1, mitochondrial (E. coli)##NM_025196|GRPEL1|80273|GrpE-like 1, mitochondrial (E. coli)##AK093974|TADA2B|93624|transcriptional adaptor 2B##NM_020777|SORCS2|57537|sortilin-related VPS10 domain containing receptor 2##AF286190|SORCS2|57537|sortilin-related VPS10 domain containing receptor 2##BC034552|PSAPL1|768239|prosaposin-like 1 (gene/pseudogene)##BC048325|PSAPL1|768239|prosaposin-like 1 (gene/pseudogene)##BC068579|PSAPL1|768239|prosaposin-like 1 (gene/pseudogene)##DQ991252|PSAPL1|768239|prosaposin-like 1 (gene/pseudogene)##NM_001085382|PSAPL1|768239|prosaposin-like 1 (gene/pseudogene)##AK297631|AFAP1|60312|actin filament associated protein 1##AK290807|AFAP1|60312|actin filament associated protein 1##NM_001134647|AFAP1|60312|actin filament associated protein 1##NM_198595|AFAP1|60312|actin filament associated protein 1	0.082263	
chr9	35815093	35815210	reg1000666.p1	6.566	+	TSC_hg19_v1_chr9_-_35815040 NM_032593	-96	-	TSC_hg19_v1_chr9_-_35815018 AK222582 AF356515 AY033094 AF356875 BC047737 AF085236	-139	-	DQ890798 EU176503 BC019247 AK302313 NM_001039592 NM_172312 S83157 U12978	-2951	-	BC146808 BX648702 NM_001012446	13584	-	TSC_hg19_v1_chr9_+_35829262 NM_016446 BC043384 NM_001042589 AF188239	14092	+	TSC_hg19_v1_chr9_+_35829375 BC064951 NM_001042590 BC082765	14327	+	NM_032593|HINT2|84681|histidine triad nucleotide binding protein 2##AK222582|HINT2|84681|histidine triad nucleotide binding protein 2##AF356515|HINT2|84681|histidine triad nucleotide binding protein 2##AY033094|HINT2|84681|histidine triad nucleotide binding protein 2##AF356875|HINT2|84681|histidine triad nucleotide binding protein 2##BC047737|HINT2|84681|histidine triad nucleotide binding protein 2##AF085236|HINT2|84681|histidine triad nucleotide binding protein 2##DQ890798|SPAG8|26206|sperm associated antigen 8##EU176503|SPAG8|26206|sperm associated antigen 8##BC019247|SPAG8|26206|sperm associated antigen 8##AK302313|SPAG8|26206|sperm associated antigen 8##NM_001039592|SPAG8|26206|sperm associated antigen 8##NM_172312|SPAG8|26206|sperm associated antigen 8##S83157|SPAG8|26206|sperm associated antigen 8##U12978|SPAG8|26206|sperm associated antigen 8##BC146808|C9orf128|392307|chromosome 9 open reading frame 128##BX648702|C9orf128|392307|chromosome 9 open reading frame 128##NM_001012446|C9orf128|392307|chromosome 9 open reading frame 128##NM_016446|TMEM8B|51754|transmembrane protein 8B##BC043384|TMEM8B|51754|transmembrane protein 8B##NM_001042589|TMEM8B|51754|transmembrane protein 8B##AF188239|TMEM8B|51754|transmembrane protein 8B##BC064951|TMEM8B|51754|transmembrane protein 8B##NM_001042590|TMEM8B|51754|transmembrane protein 8B##BC082765|TMEM8B|51754|transmembrane protein 8B	2.003406	denovo_WM_21:20:0.870	denovo_WM_21:60:0.239	denovo_WM_21:100:0.895
chr22	24181364	24181494	reg1000294.p2	6.564	+	AB528119 CU013077 CU013365 CU691264 TSC_hg19_v1_chr22_-_24181194 AK096976 AK125830 BC057830 CR456372 AL389876 NM_001002862 NM_001135751 NM_198440	-244	-	TSC_hg19_v1_chr22_+_24129164 AK024025 NM_001007468 NM_003073 AK303620 AK021419 AK299411 AJ011737 AJ011738 U04847 BC117114 BC143667 CR456581 AL389878 AB463295 CU013180 CU013468 HQ258224 AB017523	-52180	+	AK075448 AK129792 NM_005940 X57766 BC057788	-66384	+	AF443201 AJ271290 NM_001024938 NM_030807 AK314502 AK315937 AK075467 AK296169 AK308602 BC063525 BC100807 BC100808 BC100809 BC100810 AK300196 TSC_hg19_v1_chr22_+_24199338	17769	+	NM_001024939 TSC_hg19_v1_chr22_+_24200061 AK304409 AK308589 AK316049 CR456373 AB463269 CU013078 CU013366	18684	+	TSC_hg19_v1_chr22_+_24236567 BC022414 NM_002415 BC013976	55132	+	CU013077|DERL3|91319|Der1-like domain family, member 3##CU013365|DERL3|91319|Der1-like domain family, member 3##AK096976|DERL3|91319|Der1-like domain family, member 3##AK125830|DERL3|91319|Der1-like domain family, member 3##BC057830|DERL3|91319|Der1-like domain family, member 3##CR456372|DERL3|91319|Der1-like domain family, member 3##AL389876|DERL3|91319|Der1-like domain family, member 3##NM_001002862|DERL3|91319|Der1-like domain family, member 3##NM_001135751|DERL3|91319|Der1-like domain family, member 3##NM_198440|DERL3|91319|Der1-like domain family, member 3##AK024025|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##NM_001007468|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##NM_003073|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK303620|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK021419|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK299411|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AJ011737|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AJ011738|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##BC117114|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##BC143667|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##CR456581|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AL389878|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##CU013180|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##CU013468|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##HQ258224|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AB017523|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK075448|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##AK129792|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##NM_005940|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##X57766|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##BC057788|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##AF443201|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AJ271290|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##NM_001024938|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##NM_030807|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK314502|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK315937|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK075467|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK296169|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK308602|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC063525|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC100807|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC100808|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC100809|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC100810|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK300196|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##NM_001024939|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK304409|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK308589|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK316049|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##CR456373|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##CU013078|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##CU013366|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC022414|MIF|4282|macrophage migration inhibitory factor (glycosylation-inhibiting factor)##NM_002415|MIF|4282|macrophage migration inhibitory factor (glycosylation-inhibiting factor)##BC013976|MIF|4282|macrophage migration inhibitory factor (glycosylation-inhibiting factor)	1.529499	denovo_WM_21:19:0.809	denovo_WM_21:-53:0.720
chr17	45727162	45727270	reg1000354.p2	6.559	+	TSC_hg19_v1_chr17_+_45726838 AK316421	-375	+	TSC_hg19_v1_chr17_+_45608738 BC065294	-118465	+	TSC_hg19_v1_chr17_+_45608647 AK095877 AK296887 AJ132583	-118535	+	L38951 NM_002265 TSC_hg19_v1_chr17_+_45727284	68	+	BC036703 TSC_hg19_v1_chr17_+_45727323 AK314780 BC003572 BC024045	129	+	TSC_hg19_v1_chr17_+_45727579 DQ892863 DQ896112 AB384802 BT009797	368	+	AK316421|KPNB1|3837|karyopherin (importin) beta 1##BC065294|NPEPPS|9520|aminopeptidase puromycin sensitive##AK095877|NPEPPS|9520|aminopeptidase puromycin sensitive##AK296887|NPEPPS|9520|aminopeptidase puromycin sensitive##AJ132583|NPEPPS|9520|aminopeptidase puromycin sensitive##L38951|KPNB1|3837|karyopherin (importin) beta 1##NM_002265|KPNB1|3837|karyopherin (importin) beta 1##BC036703|KPNB1|3837|karyopherin (importin) beta 1##AK314780|KPNB1|3837|karyopherin (importin) beta 1##BC003572|KPNB1|3837|karyopherin (importin) beta 1##BC024045|KPNB1|3837|karyopherin (importin) beta 1##DQ892863|KPNB1|3837|karyopherin (importin) beta 1##DQ896112|KPNB1|3837|karyopherin (importin) beta 1##BT009797|KPNB1|3837|karyopherin (importin) beta 1	0.116036	
chr19	5904514	5904679	reg1000652.p1	6.559	+	TSC_hg19_v1_chr19_-_5903991 NM_001193375 NM_175614	-589	-	AJ539081 TSC_hg19_v1_chr19_-_5903795 AX775861 BC069045 AY726561 AK127692 AK291087	-836	-	BC140905 NM_002034 U27329 U27330	-34048	-	TSC_hg19_v1_chr19_+_5904884 NM_001017921 AK124162 BC110802	273	+	AK226026 NM_004058 NM_080590 BC080599 BC019065 BC101513 BC104766 X97966 BC011961	9745	+	CU678680 DQ234346 AK308205 TSC_hg19_v1_chr19_-_5978122 BC004349 AL050149 AK222813 AK301942 Y08698 AK222990	73516	-	NM_001193375|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##NM_175614|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##AJ539081|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##BC069045|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##AY726561|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##AK127692|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##BC140905|FUT5|2527|fucosyltransferase 5 (alpha (1,3) fucosyltransferase)##NM_002034|FUT5|2527|fucosyltransferase 5 (alpha (1,3) fucosyltransferase)##U27329|FUT5|2527|fucosyltransferase 5 (alpha (1,3) fucosyltransferase)##U27330|FUT5|2527|fucosyltransferase 5 (alpha (1,3) fucosyltransferase)##NM_001017921|VMAC|400673|vimentin-type intermediate filament associated coiled-coil protein##AK124162|VMAC|400673|vimentin-type intermediate filament associated coiled-coil protein##BC110802|VMAC|400673|vimentin-type intermediate filament associated coiled-coil protein##AK226026|CAPS|828|calcyphosine##NM_004058|CAPS|828|calcyphosine##NM_080590|CAPS|828|calcyphosine##BC080599|CAPS|828|calcyphosine##BC019065|CAPS|828|calcyphosine##BC101513|CAPS|828|calcyphosine##BC104766|CAPS|828|calcyphosine##X97966|CAPS|828|calcyphosine##BC011961|CAPS|828|calcyphosine##DQ234346|RANBP3|8498|RAN binding protein 3##AK308205|RANBP3|8498|RAN binding protein 3##BC004349|RANBP3|8498|RAN binding protein 3##AL050149|RANBP3|8498|RAN binding protein 3##AK222813|RANBP3|8498|RAN binding protein 3##AK301942|RANBP3|8498|RAN binding protein 3##Y08698|RANBP3|8498|RAN binding protein 3##AK222990|RANBP3|8498|RAN binding protein 3	0.0	
chr5	75013234	75013373	reg1000771.p1	6.549	+	TSC_hg19_v1_chr5_-_75013228 BC010695 AK296071 BC065750 AK311296 BC050459 NM_001099271	-43	-	BC101325 AK093098 AX747921 BC101326 BC101327 BC101328 NM_152408	-5041	-	NM_001130105	-205498	-	AK094917 BC100824 BC100825 BC100826 BC100827 NM_014979	365968	+	TSC_hg19_v1_chr5_+_75699106 AK291066 NM_006633 U51903	685813	+	BC095499 AB464500 AK312848 BC093648 BC093650 U92971 AK298585 BX537386 NM_004101	905842	-	BC010695|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK296071|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC065750|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK311296|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC050459|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##NM_001099271|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101325|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK093098|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101326|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101327|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101328|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##NM_152408|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##NM_001130105|COL4A3BP|10087|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein##AK094917|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100824|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100825|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100826|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100827|SV2C|22987|synaptic vesicle glycoprotein 2C##NM_014979|SV2C|22987|synaptic vesicle glycoprotein 2C##AK291066|IQGAP2|10788|IQ motif containing GTPase activating protein 2##NM_006633|IQGAP2|10788|IQ motif containing GTPase activating protein 2##U51903|IQGAP2|10788|IQ motif containing GTPase activating protein 2##BC095499|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##AK312848|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BC093648|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BC093650|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##U92971|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BX537386|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##NM_004101|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2	0.033645	
chr14	51561873	51561988	reg1000802.p1	6.546	+	CU680598 TSC_hg19_v1_chr14_-_51561792 BC013414 D87458	-153	-	AF046785 AF066858 TSC_hg19_v1_chr14_-_51411202 AK313206 Y15233 AK309333 BC065011 BC110791 BC009895 BC082229 AK225904 AK300580 BC095850 M14636 NM_001163940 NM_002863	-150748	-	AY311396 AY311397 AY311398 AY311399 BC107141 NM_001206673 NM_181814 BC107142 AK128464	-223052	+	TSC_hg19_v1_chr14_-_51562045 AK055388	123	-	NM_015163 NM_052978	491	-	NM_030755 AB048246 TSC_hg19_v1_chr14_+_51706980 AK302416 BC036460 BC016769 BC050366 AK075395 BC032834 AK303134 AL080080 BC056874 AY358640 AK312905 DQ891674 DQ894860 CU690352	145019	+	BC013414|TRIM9|114088|tripartite motif containing 9##D87458|TRIM9|114088|tripartite motif containing 9##AF046785|PYGL|5836|phosphorylase, glycogen, liver##AF066858|PYGL|5836|phosphorylase, glycogen, liver##AK313206|PYGL|5836|phosphorylase, glycogen, liver##Y15233|PYGL|5836|phosphorylase, glycogen, liver##AK309333|PYGL|5836|phosphorylase, glycogen, liver##BC065011|PYGL|5836|phosphorylase, glycogen, liver##BC110791|PYGL|5836|phosphorylase, glycogen, liver##BC009895|PYGL|5836|phosphorylase, glycogen, liver##BC082229|PYGL|5836|phosphorylase, glycogen, liver##AK225904|PYGL|5836|phosphorylase, glycogen, liver##AK300580|PYGL|5836|phosphorylase, glycogen, liver##BC095850|PYGL|5836|phosphorylase, glycogen, liver##M14636|PYGL|5836|phosphorylase, glycogen, liver##NM_001163940|PYGL|5836|phosphorylase, glycogen, liver##NM_002863|PYGL|5836|phosphorylase, glycogen, liver##AY311396|ABHD12B|145447|abhydrolase domain containing 12B##AY311397|ABHD12B|145447|abhydrolase domain containing 12B##AY311398|ABHD12B|145447|abhydrolase domain containing 12B##AY311399|ABHD12B|145447|abhydrolase domain containing 12B##BC107141|ABHD12B|145447|abhydrolase domain containing 12B##NM_001206673|ABHD12B|145447|abhydrolase domain containing 12B##NM_181814|ABHD12B|145447|abhydrolase domain containing 12B##BC107142|ABHD12B|145447|abhydrolase domain containing 12B##AK128464|ABHD12B|145447|abhydrolase domain containing 12B##AK055388|TRIM9|114088|tripartite motif containing 9##NM_015163|TRIM9|114088|tripartite motif containing 9##NM_052978|TRIM9|114088|tripartite motif containing 9##NM_030755|TMX1|81542|thioredoxin-related transmembrane protein 1##AB048246|TMX1|81542|thioredoxin-related transmembrane protein 1##BC036460|TMX1|81542|thioredoxin-related transmembrane protein 1##BC016769|TMX1|81542|thioredoxin-related transmembrane protein 1##BC050366|TMX1|81542|thioredoxin-related transmembrane protein 1##AK075395|TMX1|81542|thioredoxin-related transmembrane protein 1##BC032834|TMX1|81542|thioredoxin-related transmembrane protein 1##AK303134|TMX1|81542|thioredoxin-related transmembrane protein 1##AL080080|TMX1|81542|thioredoxin-related transmembrane protein 1##BC056874|TMX1|81542|thioredoxin-related transmembrane protein 1##AY358640|TMX1|81542|thioredoxin-related transmembrane protein 1##AK312905|TMX1|81542|thioredoxin-related transmembrane protein 1##DQ891674|TMX1|81542|thioredoxin-related transmembrane protein 1##DQ894860|TMX1|81542|thioredoxin-related transmembrane protein 1	0.988514	denovo_WM_21:17:0.976
chr12	57472565	57472672	reg1000248.p1	6.529	+	NM_001130963 NM_015257 TSC_hg19_v1_chr12_-_57472578	-41	-	TSC_hg19_v1_chr12_-_57472548 AL833310 AL833311	-69	-	TSC_hg19_v1_chr12_-_57472537 BC071597 BC117436 BC126300 BC144029 CR749406 AK294566	-78	-	TSC_hg19_v1_chr12_+_57482684 NM_005967	10061	+	TSC_hg19_v1_chr12_+_57482900 BC065931 AK314229 U48361	10284	+	TSC_hg19_v1_chr12_+_57482929 BC007756 AB463930 CU688106	10369	+	NM_001130963|TMEM194A|23306|transmembrane protein 194A##NM_015257|TMEM194A|23306|transmembrane protein 194A##AL833310|TMEM194A|23306|transmembrane protein 194A##AL833311|TMEM194A|23306|transmembrane protein 194A##BC071597|TMEM194A|23306|transmembrane protein 194A##BC117436|TMEM194A|23306|transmembrane protein 194A##BC126300|TMEM194A|23306|transmembrane protein 194A##BC144029|TMEM194A|23306|transmembrane protein 194A##CR749406|TMEM194A|23306|transmembrane protein 194A##AK294566|TMEM194A|23306|transmembrane protein 194A##NM_005967|NAB2|4665|NGFI-A binding protein 2 (EGR1 binding protein 2)##BC065931|NAB2|4665|NGFI-A binding protein 2 (EGR1 binding protein 2)##AK314229|NAB2|4665|NGFI-A binding protein 2 (EGR1 binding protein 2)##U48361|NAB2|4665|NGFI-A binding protein 2 (EGR1 binding protein 2)##BC007756|NAB2|4665|NGFI-A binding protein 2 (EGR1 binding protein 2)	0.64043	denovo_WM_21:15:0.640
chrX	58514797	58514893	reg1000623.p1	6.528	+	EU446736 TSC_hg19_v1_chrX_-_57936884 BC059356 AK292686 AK122815 NM_007156	-577886	-	TSC_hg19_v1_chrX_+_57618452 AK289766 AB384714	-896385	+	NM_007157	-896577	+	BC112360 TSC_hg19_v1_chrX_-_62571212 AK126931 AL833314 NM_001012968	4056354	-	TSC_hg19_v1_chrX_-_62648209 BC048208 AK129670	4133422	-	TSC_hg19_v1_chrX_-_62780938 AK001756 AL080202	4266022	-	EU446736|ZXDA|7789|zinc finger, X-linked, duplicated A##BC059356|ZXDA|7789|zinc finger, X-linked, duplicated A##AK292686|ZXDA|7789|zinc finger, X-linked, duplicated A##AK122815|ZXDA|7789|zinc finger, X-linked, duplicated A##NM_007156|ZXDA|7789|zinc finger, X-linked, duplicated A##AK289766|ZXDB|158586|zinc finger, X-linked, duplicated B##NM_007157|ZXDB|158586|zinc finger, X-linked, duplicated B##BC112360|SPIN4|139886|spindlin family, member 4##AK126931|SPIN4|139886|spindlin family, member 4##AL833314|SPIN4|139886|spindlin family, member 4##NM_001012968|SPIN4|139886|spindlin family, member 4##BC048208|LOC92249|92249|uncharacterized LOC92249##AK129670|LOC92249|92249|uncharacterized LOC92249##AK001756|LOC92249|92249|uncharacterized LOC92249##AL080202|LOC92249|92249|uncharacterized LOC92249	0.0	
chr7	44646384	44646531	reg1000797.p1	6.525	+	TSC_hg19_v1_chr7_+_44646225 D10523 BC004964 BC014617	-229	+	TSC_hg19_v1_chr7_+_44646197 AK314179	-260	+	AK304439 TSC_hg19_v1_chr7_+_44646190	-265	+	TSC_hg19_v1_chr7_+_44788175 BC110435	141725	+	TSC_hg19_v1_chr7_+_44788465 AK090415 NM_031449	142034	+	NM_174929 BC131780 BC016968 AY426594 AF357908	149360	+	D10523|OGDH|4967|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)##BC004964|OGDH|4967|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)##BC014617|OGDH|4967|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)##AK314179|OGDH|4967|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)##AK304439|OGDH|4967|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)##BC110435|ZMIZ2|83637|zinc finger, MIZ-type containing 2##AK090415|ZMIZ2|83637|zinc finger, MIZ-type containing 2##NM_031449|ZMIZ2|83637|zinc finger, MIZ-type containing 2##NM_174929|ZMIZ2|83637|zinc finger, MIZ-type containing 2##BC131780|ZMIZ2|83637|zinc finger, MIZ-type containing 2##BC016968|ZMIZ2|83637|zinc finger, MIZ-type containing 2##AY426594|ZMIZ2|83637|zinc finger, MIZ-type containing 2##AF357908|ZMIZ2|83637|zinc finger, MIZ-type containing 2	0.0	
chr19	49140867	49141017	reg1000500.p1	6.524	+	AB208807 TSC_hg19_v1_chr19_-_49140623 BC011965 U79283 AK310025 NM_001352	-338	-	BC010671 NM_001204160 EF107108 AK125560	-12696	+	AK000599 TSC_hg19_v1_chr19_+_49127648	-13292	+	AF067662 AB018195 TSC_hg19_v1_chr19_-_49149299 AY358967 NM_001217	8409	-	BC018654 BC018697 BC033207 NM_145807 BC021210	35331	-	NM_000511 NM_001097638 AK290277 D87942 BC001899 BC121066	58319	+	AB208807|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##BC011965|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##U79283|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##AK310025|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##NM_001352|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##BC010671|SPHK2|56848|sphingosine kinase 2##NM_001204160|SPHK2|56848|sphingosine kinase 2##EF107108|SPHK2|56848|sphingosine kinase 2##AK125560|SPHK2|56848|sphingosine kinase 2##AK000599|SPHK2|56848|sphingosine kinase 2##AF067662|CA11|770|carbonic anhydrase XI##AB018195|CA11|770|carbonic anhydrase XI##AY358967|CA11|770|carbonic anhydrase XI##NM_001217|CA11|770|carbonic anhydrase XI##BC018654|NTN5|126147|netrin 5##BC018697|NTN5|126147|netrin 5##BC033207|NTN5|126147|netrin 5##NM_145807|NTN5|126147|netrin 5##BC021210|NTN5|126147|netrin 5##NM_000511|FUT2|2524|fucosyltransferase 2 (secretor status included)##NM_001097638|FUT2|2524|fucosyltransferase 2 (secretor status included)##AK290277|FUT2|2524|fucosyltransferase 2 (secretor status included)##D87942|FUT2|2524|fucosyltransferase 2 (secretor status included)##BC001899|FUT2|2524|fucosyltransferase 2 (secretor status included)##BC121066|FUT2|2524|fucosyltransferase 2 (secretor status included)	0.097243	
chr2	70142037	70142150	reg1000238.p2	6.518	+	NM_006857 TSC_hg19_v1_chr2_+_70121093 BC017890 X76302 AK291128 AK312041 CU676102	-20994	+	TSC_hg19_v1_chr2_+_70056924 AB527982 EU832645 EU832722 CU675651	-85122	+	AK024042 TSC_hg19_v1_chr2_+_70056791 BC007420 NM_178439 AK023119	-85286	+	TSC_hg19_v1_chr2_+_70142202 NM_001202513 NM_001202514 NM_002357 BC098396	100	+	TSC_hg19_v1_chr2_+_70142240 AK301088 AK312734	157	+	TSC_hg19_v1_chr2_+_70142307 L06895 BC113531 BC117260 BC143831 BC143832 BC144601 BC069377 BC069433 AB463858 CR536495 CR541692 CU686788 HQ258749	289	+	NM_006857|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)##BC017890|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)##X76302|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)##AK291128|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)##AK312041|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)##EU832645|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##EU832722|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##AK024042|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##BC007420|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##NM_178439|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##AK023119|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##NM_001202513|MXD1|4084|MAX dimerization protein 1##NM_001202514|MXD1|4084|MAX dimerization protein 1##NM_002357|MXD1|4084|MAX dimerization protein 1##BC098396|MXD1|4084|MAX dimerization protein 1##AK301088|MXD1|4084|MAX dimerization protein 1##AK312734|MXD1|4084|MAX dimerization protein 1##L06895|MXD1|4084|MAX dimerization protein 1##BC113531|MXD1|4084|MAX dimerization protein 1##BC117260|MXD1|4084|MAX dimerization protein 1##BC143831|MXD1|4084|MAX dimerization protein 1##BC143832|MXD1|4084|MAX dimerization protein 1##BC144601|MXD1|4084|MAX dimerization protein 1##BC069377|MXD1|4084|MAX dimerization protein 1##BC069433|MXD1|4084|MAX dimerization protein 1##CR536495|MXD1|4084|MAX dimerization protein 1##CR541692|MXD1|4084|MAX dimerization protein 1##HQ258749|MXD1|4084|MAX dimerization protein 1	0.098281	
chr19	6536238	6536351	reg1000815.p1	6.506	+	NM_003811 BC104805 BC104807 TSC_hg19_v1_chr19_+_6531036 AK313999 AB590869 U03398	-5268	+	CU675455 EU831818 EU831895 AB590868 TSC_hg19_v1_chr19_-_6502321 BC006570 AK095202 AK294102 AK295917 AK075307 BC013683 NM_006087 AK293503	-33977	-	TSC_hg19_v1_chr19_-_6481799 AK303509 BC033437 AK026410 AK225623 AK303226 NM_024898	-54511	-	AB590870 BT007211 TSC_hg19_v1_chr19_-_6591039	54738	-	TSC_hg19_v1_chr19_-_6591126 BC000725 AK298467	54812	-	TSC_hg19_v1_chr19_-_6591162 S69339 L08096 NM_001252	54864	-	NM_003811|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104805|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104807|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##AK313999|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##U03398|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##EU831818|TUBB4A|10382|tubulin, beta 4A class IVa##EU831895|TUBB4A|10382|tubulin, beta 4A class IVa##BC006570|TUBB4A|10382|tubulin, beta 4A class IVa##AK095202|TUBB4A|10382|tubulin, beta 4A class IVa##AK295917|TUBB4A|10382|tubulin, beta 4A class IVa##AK075307|TUBB4A|10382|tubulin, beta 4A class IVa##BC013683|TUBB4A|10382|tubulin, beta 4A class IVa##NM_006087|TUBB4A|10382|tubulin, beta 4A class IVa##AK293503|TUBB4A|10382|tubulin, beta 4A class IVa##AK303509|DENND1C|79958|DENN/MADD domain containing 1C##BC033437|DENND1C|79958|DENN/MADD domain containing 1C##AK026410|DENND1C|79958|DENN/MADD domain containing 1C##AK225623|DENND1C|79958|DENN/MADD domain containing 1C##AK303226|DENND1C|79958|DENN/MADD domain containing 1C##NM_024898|DENND1C|79958|DENN/MADD domain containing 1C##BT007211|CD70|970|CD70 molecule##BC000725|CD70|970|CD70 molecule##AK298467|CD70|970|CD70 molecule##S69339|CD70|970|CD70 molecule##L08096|CD70|970|CD70 molecule##NM_001252|CD70|970|CD70 molecule	1.247233	denovo_WM_21:28:0.441	denovo_WM_21:-97:0.806
chr19	56159458	56159577	reg1000190.p2	6.504	+	AF054984 U79303 AK097095 TSC_hg19_v1_chr19_+_56159577 GU354321 GU354322 GU354323	-9	+	NM_013301	-564	+	TSC_hg19_v1_chr19_+_56155014 AF151023 AK026203 NM_016535 BC010097 AK315603 BC001219 BC071845	-4515	+	NM_001012478 NM_007279 TSC_hg19_v1_chr19_+_56165489 AK311672 BC030574	5946	+	TSC_hg19_v1_chr19_+_56166394 BC008740	6881	+	TSC_hg19_v1_chr19_+_56166422 X64044 CU679069 AB527505 AB451261 AB451387	6927	+	AF054984|CCDC106|29903|coiled-coil domain containing 106##U79303|CCDC106|29903|coiled-coil domain containing 106##AK097095|CCDC106|29903|coiled-coil domain containing 106##GU354321|CCDC106|29903|coiled-coil domain containing 106##GU354322|CCDC106|29903|coiled-coil domain containing 106##GU354323|CCDC106|29903|coiled-coil domain containing 106##NM_013301|CCDC106|29903|coiled-coil domain containing 106##AF151023|ZNF581|51545|zinc finger protein 581##AK026203|ZNF581|51545|zinc finger protein 581##NM_016535|ZNF581|51545|zinc finger protein 581##BC010097|ZNF581|51545|zinc finger protein 581##AK315603|ZNF581|51545|zinc finger protein 581##BC001219|ZNF581|51545|zinc finger protein 581##BC071845|ZNF581|51545|zinc finger protein 581##NM_001012478|U2AF2|11338|U2 small nuclear RNA auxiliary factor 2##NM_007279|U2AF2|11338|U2 small nuclear RNA auxiliary factor 2##AK311672|U2AF2|11338|U2 small nuclear RNA auxiliary factor 2##BC030574|U2AF2|11338|U2 small nuclear RNA auxiliary factor 2##BC008740|U2AF2|11338|U2 small nuclear RNA auxiliary factor 2##X64044|U2AF2|11338|U2 small nuclear RNA auxiliary factor 2##AB451261|U2AF2|11338|U2 small nuclear RNA auxiliary factor 2##AB451387|U2AF2|11338|U2 small nuclear RNA auxiliary factor 2	0.0	
chr19	23433231	23433332	reg1000408.p1	6.502	+	AK301230 TSC_hg19_v1_chr19_-_23433196	-82	-	AK131472 TSC_hg19_v1_chr19_+_23299828	-133475	+	NM_001080409	-466309	-	TSC_hg19_v1_chr19_-_23457022 AK023040	23737	-	TSC_hg19_v1_chr19_-_23578274 AK300294 L11672 AK291256 NM_003430	144983	-	TSC_hg19_v1_chr19_-_23598839 AK022793	165563	-	AK301230|ZNF724P|440519|zinc finger protein 724, pseudogene##AK131472|ZNF730|100129543|zinc finger protein 730##NM_001080409|ZNF99|7652|zinc finger protein 99##AK023040|LOC100132815|100132815|importin 5 pseudogene##AK300294|ZNF91|7644|zinc finger protein 91##L11672|ZNF91|7644|zinc finger protein 91##AK291256|ZNF91|7644|zinc finger protein 91##NM_003430|ZNF91|7644|zinc finger protein 91	0.027355	
chr15	43785351	43785492	reg1000873.p1	6.501	+	BC063119 TSC_hg19_v1_chr15_-_43785370	-35	-	TSC_hg19_v1_chr15_-_43785355 AK292915 BC017846 AB210025 BX537418 AK295764 AK307405 NM_001141979 NM_001141980	-111	-	TSC_hg19_v1_chr15_+_43663381 AJ249677 CU680398 DQ896017 EU176400	-121970	+	BC112161 NM_005657 AF078776 TSC_hg19_v1_chr15_-_43802798	17315	-	NM_002373 TSC_hg19_v1_chr15_+_43809825 AK291052 BC055312 BC094702 BC010470	24408	+	AF543190 AF502586 AF502588 NM_014659 AB002375 AF502587 AF502589	91645	-	BC063119|TP53BP1|7158|tumor protein p53 binding protein 1##AK292915|TP53BP1|7158|tumor protein p53 binding protein 1##BC017846|TP53BP1|7158|tumor protein p53 binding protein 1##AB210025|TP53BP1|7158|tumor protein p53 binding protein 1##BX537418|TP53BP1|7158|tumor protein p53 binding protein 1##AK295764|TP53BP1|7158|tumor protein p53 binding protein 1##AK307405|TP53BP1|7158|tumor protein p53 binding protein 1##NM_001141979|TP53BP1|7158|tumor protein p53 binding protein 1##NM_001141980|TP53BP1|7158|tumor protein p53 binding protein 1##AJ249677|TUBGCP4|27229|tubulin, gamma complex associated protein 4##DQ896017|TUBGCP4|27229|tubulin, gamma complex associated protein 4##EU176400|TUBGCP4|27229|tubulin, gamma complex associated protein 4##BC112161|TP53BP1|7158|tumor protein p53 binding protein 1##NM_005657|TP53BP1|7158|tumor protein p53 binding protein 1##AF078776|TP53BP1|7158|tumor protein p53 binding protein 1##NM_002373|MAP1A|4130|microtubule-associated protein 1A##AK291052|MAP1A|4130|microtubule-associated protein 1A##BC055312|MAP1A|4130|microtubule-associated protein 1A##BC094702|MAP1A|4130|microtubule-associated protein 1A##BC010470|MAP1A|4130|microtubule-associated protein 1A##AF543190|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1##AF502586|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1##AF502588|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1##NM_014659|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1##AB002375|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1##AF502587|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1##AF502589|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1	0.0	
chr19	11456975	11457155	reg1000676.p1	6.501	+	BC008365 BC091472 AY358949 TSC_hg19_v1_chr19_-_11456946 AK291979 NM_001145416 NM_033408 NM_198536	-132	-	AF081353 TSC_hg19_v1_chr19_-_11450305 BC016471 AK313538 NM_004283	-6765	-	AF133424 NM_012466 BC029908	-50232	+	TSC_hg19_v1_chr19_+_11457194 NM_001080503 AK301653 AK316339 AK303641	127	+	TSC_hg19_v1_chr19_+_11457247 AK293611 BC038439	221	+	NM_001170635 NM_022737 TSC_hg19_v1_chr19_+_11466107 AK023117 AY304516 AK225482	9050	+	BC008365|TMEM205|374882|transmembrane protein 205##BC091472|TMEM205|374882|transmembrane protein 205##AY358949|TMEM205|374882|transmembrane protein 205##AK291979|TMEM205|374882|transmembrane protein 205##NM_001145416|TMEM205|374882|transmembrane protein 205##NM_033408|TMEM205|374882|transmembrane protein 205##NM_198536|TMEM205|374882|transmembrane protein 205##AF081353|RAB3D|9545|RAB3D, member RAS oncogene family##BC016471|RAB3D|9545|RAB3D, member RAS oncogene family##AK313538|RAB3D|9545|RAB3D, member RAS oncogene family##NM_004283|RAB3D|9545|RAB3D, member RAS oncogene family##NM_012466|TSPAN16|26526|tetraspanin 16##BC029908|TSPAN16|26526|tetraspanin 16##NM_001080503|CCDC159|126075|coiled-coil domain containing 159##AK301653|CCDC159|126075|coiled-coil domain containing 159##AK316339|CCDC159|126075|coiled-coil domain containing 159##AK303641|CCDC159|126075|coiled-coil domain containing 159##AK293611|CCDC159|126075|coiled-coil domain containing 159##BC038439|CCDC159|126075|coiled-coil domain containing 159##NM_001170635|LPPR2|64748|lipid phosphate phosphatase-related protein type 2##NM_022737|LPPR2|64748|lipid phosphate phosphatase-related protein type 2##AK023117|LPPR2|64748|lipid phosphate phosphatase-related protein type 2##AY304516|LPPR2|64748|lipid phosphate phosphatase-related protein type 2##AK225482|LPPR2|64748|lipid phosphate phosphatase-related protein type 2	0.398627	denovo_WM_21:-74:0.399
chr5	179159674	179159793	reg1000746.p1	6.501	+	TSC_hg19_v1_chr5_+_179132740 BC050534 AB527263 CU678492 DQ890627 DQ893794 S67659	-26981	+	TSC_hg19_v1_chr5_+_179126026 M94859 L18887 L10284 AK312334 AJ271880	-33612	+	TSC_hg19_v1_chr5_+_179125995 BC003552 BC042843	-33739	+	TSC_hg19_v1_chr5_+_179159831 D83785 NM_014757 AB209135 BC047937	119	+	NM_145867 BC029498 U11552 AK312033 TSC_hg19_v1_chr5_+_179221016 U09353 DQ890962 DQ894134 AB590307	61299	+	AK023137 NM_054013	70141	-	BC050534|CANX|821|calnexin##DQ890627|CANX|821|calnexin##DQ893794|CANX|821|calnexin##M94859|CANX|821|calnexin##L18887|CANX|821|calnexin##L10284|CANX|821|calnexin##AK312334|CANX|821|calnexin##AJ271880|CANX|821|calnexin##BC003552|CANX|821|calnexin##BC042843|CANX|821|calnexin##D83785|MAML1|9794|mastermind-like 1 (Drosophila)##NM_014757|MAML1|9794|mastermind-like 1 (Drosophila)##AB209135|MAML1|9794|mastermind-like 1 (Drosophila)##BC047937|MAML1|9794|mastermind-like 1 (Drosophila)##NM_145867|LTC4S|4056|leukotriene C4 synthase##BC029498|LTC4S|4056|leukotriene C4 synthase##U11552|LTC4S|4056|leukotriene C4 synthase##AK312033|LTC4S|4056|leukotriene C4 synthase##U09353|LTC4S|4056|leukotriene C4 synthase##DQ890962|LTC4S|4056|leukotriene C4 synthase##DQ894134|LTC4S|4056|leukotriene C4 synthase##AK023137|MGAT4B|11282|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme B##NM_054013|MGAT4B|11282|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme B	0.987822	denovo_WM_21:23:0.988
chr2	169746959	169747065	reg1000631.p1	6.495	+	TSC_hg19_v1_chr2_-_169746945 AF225416 BC022255 NM_020675 AK291093	-71	-	NM_001039724 NM_001171632 BC014189 NM_052946 AK002203 AK290254 BC093072 AJ532842 DQ402497	-87885	+	AK093444 AX748130 NM_001171631	-103964	+	BC104778 BC113376 NM_001081686 NM_021176 CR627438 HQ258182	10783	+	AF091582 NM_003742	140820	-	AF529286 NM_005771	174286	+	AF225416|SPC25|57405|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)##BC022255|SPC25|57405|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)##NM_020675|SPC25|57405|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)##AK291093|SPC25|57405|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)##NM_001039724|NOSTRIN|115677|nitric oxide synthase trafficker##NM_001171632|NOSTRIN|115677|nitric oxide synthase trafficker##BC014189|NOSTRIN|115677|nitric oxide synthase trafficker##NM_052946|NOSTRIN|115677|nitric oxide synthase trafficker##AK002203|NOSTRIN|115677|nitric oxide synthase trafficker##AK290254|NOSTRIN|115677|nitric oxide synthase trafficker##BC093072|NOSTRIN|115677|nitric oxide synthase trafficker##AJ532842|NOSTRIN|115677|nitric oxide synthase trafficker##DQ402497|NOSTRIN|115677|nitric oxide synthase trafficker##AK093444|NOSTRIN|115677|nitric oxide synthase trafficker##NM_001171631|NOSTRIN|115677|nitric oxide synthase trafficker##BC104778|G6PC2|57818|glucose-6-phosphatase, catalytic, 2##BC113376|G6PC2|57818|glucose-6-phosphatase, catalytic, 2##NM_001081686|G6PC2|57818|glucose-6-phosphatase, catalytic, 2##NM_021176|G6PC2|57818|glucose-6-phosphatase, catalytic, 2##CR627438|G6PC2|57818|glucose-6-phosphatase, catalytic, 2##HQ258182|G6PC2|57818|glucose-6-phosphatase, catalytic, 2##AF091582|ABCB11|8647|ATP-binding cassette, sub-family B (MDR/TAP), member 11##NM_003742|ABCB11|8647|ATP-binding cassette, sub-family B (MDR/TAP), member 11##AF529286|DHRS9|10170|dehydrogenase/reductase (SDR family) member 9##NM_005771|DHRS9|10170|dehydrogenase/reductase (SDR family) member 9	0.985758	denovo_WM_21:-18:0.986
chr12	108908850	108908993	reg1000789.p2	6.491	+	U79526 U79527 AK291800 NM_001142343 NM_001142344 NM_004072	-175837	-	NM_001142345	-194483	-	BC110330 AB018332 NM_014653	-385434	+	TSC_hg19_v1_chr12_+_108909056 AK026074 NM_007076 AK000014 AY358992 BC001342 BC064629	161	+	AB385287 D63879 TSC_hg19_v1_chr12_-_108954936 BC103706 BC093784 BC111983 BC143253 BC004547 BC024279 AB020880 AF387506 BC032601	46013	-	TSC_hg19_v1_chr12_-_108954945 AK225174 AK304834	46025	-	U79526|CMKLR1|1240|chemokine-like receptor 1##U79527|CMKLR1|1240|chemokine-like receptor 1##AK291800|CMKLR1|1240|chemokine-like receptor 1##NM_001142343|CMKLR1|1240|chemokine-like receptor 1##NM_001142344|CMKLR1|1240|chemokine-like receptor 1##NM_004072|CMKLR1|1240|chemokine-like receptor 1##NM_001142345|CMKLR1|1240|chemokine-like receptor 1##BC110330|WSCD2|9671|WSC domain containing 2##AB018332|WSCD2|9671|WSC domain containing 2##NM_014653|WSCD2|9671|WSC domain containing 2##AK026074|FICD|11153|FIC domain containing##NM_007076|FICD|11153|FIC domain containing##AK000014|FICD|11153|FIC domain containing##AY358992|FICD|11153|FIC domain containing##BC001342|FICD|11153|FIC domain containing##BC064629|FICD|11153|FIC domain containing##D63879|SART3|9733|squamous cell carcinoma antigen recognized by T cells 3##BC103706|SART3|9733|squamous cell carcinoma antigen recognized by T cells 3##BC093784|SART3|9733|squamous cell carcinoma antigen recognized by T cells 3##BC111983|SART3|9733|squamous cell carcinoma antigen recognized by T cells 3##BC143253|SART3|9733|squamous cell carcinoma antigen recognized by T cells 3##BC004547|SART3|9733|squamous cell carcinoma antigen recognized by T cells 3##BC024279|SART3|9733|squamous cell carcinoma antigen recognized by T cells 3##AB020880|SART3|9733|squamous cell carcinoma antigen recognized by T cells 3##AF387506|SART3|9733|squamous cell carcinoma antigen recognized by T cells 3##BC032601|SART3|9733|squamous cell carcinoma antigen recognized by T cells 3##AK225174|SART3|9733|squamous cell carcinoma antigen recognized by T cells 3##AK304834|SART3|9733|squamous cell carcinoma antigen recognized by T cells 3	1.876025	denovo_WM_21:-17:0.956	denovo_WM_21:-58:0.920
chr17	76971142	76971273	reg1000920.p1	6.486	+	TSC_hg19_v1_chr17_-_76921470 BC071586 NM_003255	-49730	-	TSC_hg19_v1_chr17_-_76921336 M32304 J05593 S48568 BC052605	-49879	-	X54533 TSC_hg19_v1_chr17_-_76921138	-50092	-	TSC_hg19_v1_chr17_-_76976006 AK307665 BC002403 BC002998 AK295442 AK301040 AK301444 X79089 AK057776 BC015761 AK293183 AK055977 L13210 NM_005567	4799	-	BC005104 TSC_hg19_v1_chr17_-_76989827	18592	-	TSC_hg19_v1_chr17_-_77005820 BC017655	34573	-	BC071586|TIMP2|7077|TIMP metallopeptidase inhibitor 2##NM_003255|TIMP2|7077|TIMP metallopeptidase inhibitor 2##M32304|TIMP2|7077|TIMP metallopeptidase inhibitor 2##J05593|TIMP2|7077|TIMP metallopeptidase inhibitor 2##S48568|TIMP2|7077|TIMP metallopeptidase inhibitor 2##BC052605|TIMP2|7077|TIMP metallopeptidase inhibitor 2##X54533|TIMP2|7077|TIMP metallopeptidase inhibitor 2##AK307665|LGALS3BP|3959|lectin, galactoside-binding, soluble, 3 binding protein##BC002403|LGALS3BP|3959|lectin, galactoside-binding, soluble, 3 binding protein##BC002998|LGALS3BP|3959|lectin, galactoside-binding, soluble, 3 binding protein##AK295442|LGALS3BP|3959|lectin, galactoside-binding, soluble, 3 binding protein##AK301040|LGALS3BP|3959|lectin, galactoside-binding, soluble, 3 binding protein##AK301444|LGALS3BP|3959|lectin, galactoside-binding, soluble, 3 binding protein##X79089|LGALS3BP|3959|lectin, galactoside-binding, soluble, 3 binding protein##AK057776|LGALS3BP|3959|lectin, galactoside-binding, soluble, 3 binding protein##BC015761|LGALS3BP|3959|lectin, galactoside-binding, soluble, 3 binding protein##AK293183|LGALS3BP|3959|lectin, galactoside-binding, soluble, 3 binding protein##AK055977|LGALS3BP|3959|lectin, galactoside-binding, soluble, 3 binding protein##L13210|LGALS3BP|3959|lectin, galactoside-binding, soluble, 3 binding protein##NM_005567|LGALS3BP|3959|lectin, galactoside-binding, soluble, 3 binding protein##BC005104|CANT1|124583|calcium activated nucleotidase 1##BC017655|CANT1|124583|calcium activated nucleotidase 1	0.0	
chr8	145002569	145002690	reg1000236.p1	6.484	+	AB051895 NM_031308	-55196	-	TSC_hg19_v1_chr8_-_144923180 BC071605 AK293943 NM_178564	-79470	-	TSC_hg19_v1_chr8_-_144911540 AF114818 AK292373 NM_014281 NM_078480	-91079	-	AF330791 TSC_hg19_v1_chr8_-_145013766 AY480051 NM_201384	11074	-	AY480050 NM_201383 TSC_hg19_v1_chr8_-_145016793	14132	-	AF330792 AY480049 TSC_hg19_v1_chr8_-_145018117 NM_201382	15475	-	AB051895|EPPK1|83481|epiplakin 1##NM_031308|EPPK1|83481|epiplakin 1##BC071605|NRBP2|340371|nuclear receptor binding protein 2##AK293943|NRBP2|340371|nuclear receptor binding protein 2##NM_178564|NRBP2|340371|nuclear receptor binding protein 2##AF114818|PUF60|22827|poly-U binding splicing factor 60KDa##AK292373|PUF60|22827|poly-U binding splicing factor 60KDa##NM_014281|PUF60|22827|poly-U binding splicing factor 60KDa##NM_078480|PUF60|22827|poly-U binding splicing factor 60KDa##AY480051|PLEC|5339|plectin##NM_201384|PLEC|5339|plectin##AY480050|PLEC|5339|plectin##NM_201383|PLEC|5339|plectin##AF330792|PLEC|5339|plectin##AY480049|PLEC|5339|plectin##NM_201382|PLEC|5339|plectin	0.0	
chr19	36505140	36505324	reg1000573.p1	6.483	+	TSC_hg19_v1_chr19_-_36505128 AK310704 NM_032878 NM_198867 AB273714	-95	-	TSC_hg19_v1_chr19_-_36505110 BC036061 AK315894 BC105801 BC007601 AK304805 AK310130 AK314150	-121	-	CU690916 AK093764 AX748293 NM_001039876 BC052573 BC038360	-5594	-	TSC_hg19_v1_chr19_+_36505411 BC071809	178	+	AK289509 AK090732 NM_001199570 AK294748 BC013116 TSC_hg19_v1_chr19_-_36523720	18399	-	TSC_hg19_v1_chr19_-_36523770 AJ427922 AK092354 AX747495 AK094738 NM_015526	18551	-	AK310704|ALKBH6|84964|alkB, alkylation repair homolog 6 (E. coli)##NM_032878|ALKBH6|84964|alkB, alkylation repair homolog 6 (E. coli)##NM_198867|ALKBH6|84964|alkB, alkylation repair homolog 6 (E. coli)##AB273714|ALKBH6|84964|alkB, alkylation repair homolog 6 (E. coli)##BC036061|ALKBH6|84964|alkB, alkylation repair homolog 6 (E. coli)##AK315894|ALKBH6|84964|alkB, alkylation repair homolog 6 (E. coli)##BC105801|ALKBH6|84964|alkB, alkylation repair homolog 6 (E. coli)##BC007601|ALKBH6|84964|alkB, alkylation repair homolog 6 (E. coli)##AK304805|ALKBH6|84964|alkB, alkylation repair homolog 6 (E. coli)##AK310130|ALKBH6|84964|alkB, alkylation repair homolog 6 (E. coli)##AK314150|ALKBH6|84964|alkB, alkylation repair homolog 6 (E. coli)##AK093764|C19orf46|163183|chromosome 19 open reading frame 46##NM_001039876|C19orf46|163183|chromosome 19 open reading frame 46##BC052573|C19orf46|163183|chromosome 19 open reading frame 46##BC038360|C19orf46|163183|chromosome 19 open reading frame 46##AK289509|CLIP3|25999|CAP-GLY domain containing linker protein 3##AK090732|CLIP3|25999|CAP-GLY domain containing linker protein 3##NM_001199570|CLIP3|25999|CAP-GLY domain containing linker protein 3##AK294748|CLIP3|25999|CAP-GLY domain containing linker protein 3##BC013116|CLIP3|25999|CAP-GLY domain containing linker protein 3##AJ427922|CLIP3|25999|CAP-GLY domain containing linker protein 3##AK092354|CLIP3|25999|CAP-GLY domain containing linker protein 3##AK094738|CLIP3|25999|CAP-GLY domain containing linker protein 3##NM_015526|CLIP3|25999|CAP-GLY domain containing linker protein 3	1.110815	denovo_WM_21:-57:0.946
chr17_ctg5_hap1	1513872	1513995	reg1000724.p1	6.477	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.097033	
chr15	45694422	45694571	reg1000745.p2	6.471	+	TSC_hg19_v1_chr15_-_45670958 NM_001482	-23529	-	TSC_hg19_v1_chr15_-_45670743 CU678590 S68805 BC004141 AK098055 AK223585 AK294995 AK298350	-23757	-	AK222709 NM_004212 U84392 AK291974	-150055	+	NM_024063 TSC_hg19_v1_chr15_+_45694551 AK291457 AK023232 AK225463 BC051861 BC000981 AK022348	56	+	NM_032413 NM_197955 TSC_hg19_v1_chr15_+_45722808 AF228422 AK026298 BC021173 AB026707	28301	+	BC026089 NM_013309 TSC_hg19_v1_chr15_-_45815017	120514	-	NM_001482|GATM|2628|glycine amidinotransferase (L-arginine:glycine amidinotransferase)##S68805|GATM|2628|glycine amidinotransferase (L-arginine:glycine amidinotransferase)##BC004141|GATM|2628|glycine amidinotransferase (L-arginine:glycine amidinotransferase)##AK098055|GATM|2628|glycine amidinotransferase (L-arginine:glycine amidinotransferase)##AK223585|GATM|2628|glycine amidinotransferase (L-arginine:glycine amidinotransferase)##AK294995|GATM|2628|glycine amidinotransferase (L-arginine:glycine amidinotransferase)##AK298350|GATM|2628|glycine amidinotransferase (L-arginine:glycine amidinotransferase)##AK222709|SLC28A2|9153|solute carrier family 28 (sodium-coupled nucleoside transporter), member 2##NM_004212|SLC28A2|9153|solute carrier family 28 (sodium-coupled nucleoside transporter), member 2##U84392|SLC28A2|9153|solute carrier family 28 (sodium-coupled nucleoside transporter), member 2##AK291974|SLC28A2|9153|solute carrier family 28 (sodium-coupled nucleoside transporter), member 2##NM_024063|SPATA5L1|79029|spermatogenesis associated 5-like 1##AK291457|SPATA5L1|79029|spermatogenesis associated 5-like 1##AK023232|SPATA5L1|79029|spermatogenesis associated 5-like 1##AK225463|SPATA5L1|79029|spermatogenesis associated 5-like 1##BC051861|SPATA5L1|79029|spermatogenesis associated 5-like 1##BC000981|SPATA5L1|79029|spermatogenesis associated 5-like 1##AK022348|SPATA5L1|79029|spermatogenesis associated 5-like 1##NM_032413|C15orf48|84419|chromosome 15 open reading frame 48##NM_197955|C15orf48|84419|chromosome 15 open reading frame 48##AF228422|C15orf48|84419|chromosome 15 open reading frame 48##AK026298|C15orf48|84419|chromosome 15 open reading frame 48##BC021173|C15orf48|84419|chromosome 15 open reading frame 48##AB026707|C15orf48|84419|chromosome 15 open reading frame 48##BC026089|SLC30A4|7782|solute carrier family 30 (zinc transporter), member 4##NM_013309|SLC30A4|7782|solute carrier family 30 (zinc transporter), member 4	0.723368	denovo_WM_21:-22:0.723
chr11	68228016	68228134	reg1000404.p2	6.469	+	AF088027 TSC_hg19_v1_chr11_+_68115450	-112639	+	TSC_hg19_v1_chr11_+_68080058 AB017498 NM_002335 AF077820 AF064548 BC150595 BC098397	-147986	+	TSC_hg19_v1_chr11_-_68039453 NM_022338	-188617	-	TSC_hg19_v1_chr11_+_68228219 NM_001164160 NM_001164161 NM_001164162 NM_001164163 NM_001164164 NM_018312 BC070121 AK298180 AK303315 AK315136 CR936718 CR749815 CR933658 AB046778	134	+	AK001920 TSC_hg19_v1_chr11_+_68367929	139801	+	TSC_hg19_v1_chr11_+_68451978 NM_015973	223908	+	AF088027|LRP5|4041|low density lipoprotein receptor-related protein 5##AB017498|LRP5|4041|low density lipoprotein receptor-related protein 5##NM_002335|LRP5|4041|low density lipoprotein receptor-related protein 5##AF077820|LRP5|4041|low density lipoprotein receptor-related protein 5##AF064548|LRP5|4041|low density lipoprotein receptor-related protein 5##BC150595|LRP5|4041|low density lipoprotein receptor-related protein 5##BC098397|LRP5|4041|low density lipoprotein receptor-related protein 5##NM_022338|C11orf24|53838|chromosome 11 open reading frame 24##NM_001164160|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164161|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164162|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164163|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164164|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_018312|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##BC070121|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK298180|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK303315|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK315136|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR936718|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR749815|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR933658|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AB046778|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK001920|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_015973|GAL|51083|galanin prepropeptide	1.761633	denovo_WM_21:11:0.266	denovo_WM_21:-24:0.967	denovo_WM_21:77:0.502
chr3	51975951	51976082	reg1000609.p1	6.467	+	TSC_hg19_v1_chr3_-_51975920 DQ895802 EU176364 BC023662 AJ001340 BC009879 NM_004704 BC001113 BC010048 BC021032 AK313696	-75	-	AK131018 BC029595 BC034228 NM_152397	-38656	-	NM_001145059	-66417	-	TSC_hg19_v1_chr3_+_51976389 NM_001003931 NM_005485 Y16836 AB208803 AY126341 AF083068 AB529017	472	+	TSC_hg19_v1_chr3_+_51977304 BC014260 CU676947	1312	+	NM_080865 AB032600 BC026357	13346	+	DQ895802|RRP9|9136|ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)##EU176364|RRP9|9136|ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)##BC023662|RRP9|9136|ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)##AJ001340|RRP9|9136|ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)##BC009879|RRP9|9136|ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)##NM_004704|RRP9|9136|ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)##BC001113|RRP9|9136|ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)##BC010048|RRP9|9136|ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)##BC021032|RRP9|9136|ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)##AK313696|RRP9|9136|ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)##AK131018|IQCF1|132141|IQ motif containing F1##BC029595|IQCF1|132141|IQ motif containing F1##BC034228|IQCF1|132141|IQ motif containing F1##NM_152397|IQCF1|132141|IQ motif containing F1##NM_001145059|IQCF5|389124|IQ motif containing F5##NM_001003931|PARP3|10039|poly (ADP-ribose) polymerase family, member 3##NM_005485|PARP3|10039|poly (ADP-ribose) polymerase family, member 3##Y16836|PARP3|10039|poly (ADP-ribose) polymerase family, member 3##AB208803|PARP3|10039|poly (ADP-ribose) polymerase family, member 3##AY126341|PARP3|10039|poly (ADP-ribose) polymerase family, member 3##AF083068|PARP3|10039|poly (ADP-ribose) polymerase family, member 3##BC014260|PARP3|10039|poly (ADP-ribose) polymerase family, member 3##NM_080865|GPR62|118442|G protein-coupled receptor 62##AB032600|GPR62|118442|G protein-coupled receptor 62##BC026357|GPR62|118442|G protein-coupled receptor 62	0.0	
chr17_ctg5_hap1	563404	563498	reg1000681.p1	6.463	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.751275	denovo_WM_21:17:0.751
chr19	37288227	37288348	reg1000866.p1	6.461	+	BC136266 BC143637 TSC_hg19_v1_chr19_-_37263708 BC052603 NM_001193552	-24588	-	BC033849 NM_152603	-107986	+	TSC_hg19_v1_chr19_-_37157731 BX649031 AK292834 AY329493 NM_153257 AK299370	-130556	-	TSC_hg19_v1_chr19_+_37288417 AK094324	138	+	NM_001242802	40641	-	AK000357 BC057245 AK297474 NM_206894	40984	-	BC136266|ZNF850|342892|zinc finger protein 850##BC143637|ZNF850|342892|zinc finger protein 850##BC052603|ZNF850|342892|zinc finger protein 850##NM_001193552|ZNF850|342892|zinc finger protein 850##BC033849|ZNF567|163081|zinc finger protein 567##NM_152603|ZNF567|163081|zinc finger protein 567##BX649031|ZNF461|92283|zinc finger protein 461##AK292834|ZNF461|92283|zinc finger protein 461##AY329493|ZNF461|92283|zinc finger protein 461##NM_153257|ZNF461|92283|zinc finger protein 461##AK299370|ZNF461|92283|zinc finger protein 461##AK094324|LOC284408|284408|uncharacterized LOC284408##NM_001242802|ZNF790|388536|zinc finger protein 790##BC057245|ZNF790|388536|zinc finger protein 790##AK297474|ZNF790|388536|zinc finger protein 790##NM_206894|ZNF790|388536|zinc finger protein 790	2.080077	denovo_WM_21:-41:0.985	denovo_WM_21:93:0.904
chr13	111367743	111367879	reg1000634.p1	6.456	+	AB024402 AF181849 NM_005537	-468	+	AB024401 AF149721 TSC_hg19_v1_chr13_+_111366061	-1756	+	NM_198218 AF181850 NM_198219	-2195	+	CU674848 CU691752 TSC_hg19_v1_chr13_-_111567293	199476	-	TSC_hg19_v1_chr13_-_111567375 BC001727 AK096083 BC039715	199554	-	AK000100 NM_017664 TSC_hg19_v1_chr13_-_111567417	199605	-	AB024402|ING1|3621|inhibitor of growth family, member 1##AF181849|ING1|3621|inhibitor of growth family, member 1##NM_005537|ING1|3621|inhibitor of growth family, member 1##AB024401|ING1|3621|inhibitor of growth family, member 1##AF149721|ING1|3621|inhibitor of growth family, member 1##NM_198218|ING1|3621|inhibitor of growth family, member 1##AF181850|ING1|3621|inhibitor of growth family, member 1##NM_198219|ING1|3621|inhibitor of growth family, member 1##BC001727|ANKRD10|55608|ankyrin repeat domain 10##AK096083|ANKRD10|55608|ankyrin repeat domain 10##BC039715|ANKRD10|55608|ankyrin repeat domain 10##AK000100|ANKRD10|55608|ankyrin repeat domain 10##NM_017664|ANKRD10|55608|ankyrin repeat domain 10	0.0	
chr21	30365290	30365423	reg1000747.p1	6.456	+	BC007525 AB384515 TSC_hg19_v1_chr21_-_30365185 AF161350 AB018257 BC150284 AB621822 BC029371 BC140790 AK001915 BC031633 NM_015565	-163	-	TSC_hg19_v1_chr21_-_30257688 AB590951 BC011554 AK314100 AK225515 AF139682 NM_013240 NM_182749	-107693	-	TSC_hg19_v1_chr21_-_28339470 AK094057 NM_007038	-2025917	-	CU676110 TSC_hg19_v1_chr21_-_30391645 AF212232 BC012546 Y19009 BC017912 AK000056 AL355727 NM_016940 AK223357	26291	-	TSC_hg19_v1_chr21_+_30396981 NM_001001992 NM_001032410 NM_006447 AK025104 AK025989 AK294284 BC030777 BC010375 AK222681 AF126736 AY333928 AK222884 AK300771	31635	+	DQ892395 DQ895610 TSC_hg19_v1_chr21_+_30400257	34887	+	BC007525|LTN1|26046|listerin E3 ubiquitin protein ligase 1##AF161350|LTN1|26046|listerin E3 ubiquitin protein ligase 1##AB018257|LTN1|26046|listerin E3 ubiquitin protein ligase 1##BC150284|LTN1|26046|listerin E3 ubiquitin protein ligase 1##BC029371|LTN1|26046|listerin E3 ubiquitin protein ligase 1##BC140790|LTN1|26046|listerin E3 ubiquitin protein ligase 1##AK001915|LTN1|26046|listerin E3 ubiquitin protein ligase 1##BC031633|LTN1|26046|listerin E3 ubiquitin protein ligase 1##NM_015565|LTN1|26046|listerin E3 ubiquitin protein ligase 1##BC011554|N6AMT1|29104|N-6 adenine-specific DNA methyltransferase 1 (putative)##AK314100|N6AMT1|29104|N-6 adenine-specific DNA methyltransferase 1 (putative)##AK225515|N6AMT1|29104|N-6 adenine-specific DNA methyltransferase 1 (putative)##AF139682|N6AMT1|29104|N-6 adenine-specific DNA methyltransferase 1 (putative)##NM_013240|N6AMT1|29104|N-6 adenine-specific DNA methyltransferase 1 (putative)##NM_182749|N6AMT1|29104|N-6 adenine-specific DNA methyltransferase 1 (putative)##AK094057|ADAMTS5|11096|ADAM metallopeptidase with thrombospondin type 1 motif, 5##NM_007038|ADAMTS5|11096|ADAM metallopeptidase with thrombospondin type 1 motif, 5##AF212232|RWDD2B|10069|RWD domain containing 2B##BC012546|RWDD2B|10069|RWD domain containing 2B##Y19009|RWDD2B|10069|RWD domain containing 2B##BC017912|RWDD2B|10069|RWD domain containing 2B##AK000056|RWDD2B|10069|RWD domain containing 2B##AL355727|RWDD2B|10069|RWD domain containing 2B##NM_016940|RWDD2B|10069|RWD domain containing 2B##AK223357|RWDD2B|10069|RWD domain containing 2B##NM_001001992|USP16|10600|ubiquitin specific peptidase 16##NM_001032410|USP16|10600|ubiquitin specific peptidase 16##NM_006447|USP16|10600|ubiquitin specific peptidase 16##AK025104|USP16|10600|ubiquitin specific peptidase 16##AK025989|USP16|10600|ubiquitin specific peptidase 16##AK294284|USP16|10600|ubiquitin specific peptidase 16##BC030777|USP16|10600|ubiquitin specific peptidase 16##BC010375|USP16|10600|ubiquitin specific peptidase 16##AK222681|USP16|10600|ubiquitin specific peptidase 16##AF126736|USP16|10600|ubiquitin specific peptidase 16##AY333928|USP16|10600|ubiquitin specific peptidase 16##AK222884|USP16|10600|ubiquitin specific peptidase 16##AK300771|USP16|10600|ubiquitin specific peptidase 16##DQ892395|USP16|10600|ubiquitin specific peptidase 16##DQ895610|USP16|10600|ubiquitin specific peptidase 16	0.933018	denovo_WM_21:15:0.933
chr11	62495372	62495509	reg1000766.p2	6.450	+	TSC_hg19_v1_chr11_-_62494930 BC029105	-505	-	TSC_hg19_v1_chr11_-_62494900 DQ470474 AK122942 NM_001079559	-593	-	TSC_hg19_v1_chr11_-_62476984 BC009866 AK315423	-18447	-	TSC_hg19_v1_chr11_+_62495969 BC032123 NM_173810 AF451992 AF451993 BC053665	587	+	DQ892842 EU176736 TSC_hg19_v1_chr11_-_62521626 BC025249 AK027045 NM_024784	26154	-	NM_002696 TSC_hg19_v1_chr11_+_62529028	33588	+	BC029105|HNRNPUL2|221092|heterogeneous nuclear ribonucleoprotein U-like 2##DQ470474|HNRNPUL2|221092|heterogeneous nuclear ribonucleoprotein U-like 2##AK122942|HNRNPUL2-BSCL2|100534595|HNRNPUL2-BSCL2 readthrough##NM_001079559|HNRNPUL2|221092|heterogeneous nuclear ribonucleoprotein U-like 2##BC009866|BSCL2|26580|Berardinelli-Seip congenital lipodystrophy 2 (seipin)##AK315423|BSCL2|26580|Berardinelli-Seip congenital lipodystrophy 2 (seipin)##BC032123|TTC9C|283237|tetratricopeptide repeat domain 9C##NM_173810|TTC9C|283237|tetratricopeptide repeat domain 9C##AF451992|TTC9C|283237|tetratricopeptide repeat domain 9C##AF451993|TTC9C|283237|tetratricopeptide repeat domain 9C##BC053665|TTC9C|283237|tetratricopeptide repeat domain 9C##DQ892842|ZBTB3|79842|zinc finger and BTB domain containing 3##EU176736|ZBTB3|79842|zinc finger and BTB domain containing 3##BC025249|ZBTB3|79842|zinc finger and BTB domain containing 3##AK027045|ZBTB3|79842|zinc finger and BTB domain containing 3##NM_024784|ZBTB3|79842|zinc finger and BTB domain containing 3##NM_002696|POLR2G|5436|polymerase (RNA) II (DNA directed) polypeptide G	1.899757	denovo_WM_21:11:0.949	denovo_WM_21:-21:0.918
chr11	10879610	10879746	reg1000827.p2	6.446	+	AK123233 TSC_hg19_v1_chr11_-_10879580 AK315033 BC047754 AF205600 BC017803 BC038508 NM_001143667 NM_021211	-160	-	TSC_hg19_v1_chr11_+_10830752 AK056207	-48881	+	NM_001042559 NM_001418 TSC_hg19_v1_chr11_-_10830664	-49052	-	TSC_hg19_v1_chr11_+_10879769 BC014360 BC036635	108	+	AK055111 BC037341 TSC_hg19_v1_chr11_-_11643550 BC060864 NM_198516	763900	-	TSC_hg19_v1_chr11_+_11863036 AK127264 NM_017944	983338	+	AK123233|ZBED5|58486|zinc finger, BED-type containing 5##AK315033|ZBED5|58486|zinc finger, BED-type containing 5##BC047754|ZBED5|58486|zinc finger, BED-type containing 5##AF205600|ZBED5|58486|zinc finger, BED-type containing 5##BC017803|ZBED5|58486|zinc finger, BED-type containing 5##BC038508|ZBED5|58486|zinc finger, BED-type containing 5##NM_001143667|ZBED5|58486|zinc finger, BED-type containing 5##NM_021211|ZBED5|58486|zinc finger, BED-type containing 5##NM_001042559|EIF4G2|1982|eukaryotic translation initiation factor 4 gamma, 2##NM_001418|EIF4G2|1982|eukaryotic translation initiation factor 4 gamma, 2##BC014360|LOC729013|729013|uncharacterized LOC729013##BC036635|LOC729013|729013|uncharacterized LOC729013##AK055111|GALNTL4|374378|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4##BC037341|GALNTL4|374378|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4##BC060864|GALNTL4|374378|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4##NM_198516|GALNTL4|374378|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4##AK127264|USP47|55031|ubiquitin specific peptidase 47##NM_017944|USP47|55031|ubiquitin specific peptidase 47	0.051118	
chr16	3314560	3314693	reg1000670.p1	6.441	+	BC104941 BC104943 TSC_hg19_v1_chr16_+_3313780 AK295350 AK096958	-854	+	FJ785717 FJ785718 FJ785719 FJ785720 FJ785721 FJ785722 AB527834 BC101511 BC101537 Y14441 AK298660 AF018080 NM_000243 NM_001198536	-8020	-	Y14443 BC054005 NM_001145448 NM_198088 NM_001145446 NM_198087	-29219	-	TSC_hg19_v1_chr16_+_3333502 BC008805 NM_005741 AK312421	18817	+	TSC_hg19_v1_chr16_+_3333522 D88827	18898	+	TSC_hg19_v1_chr16_-_3355422 AK309406 NM_033208	40801	-	BC104941|FLJ39639|283876|uncharacterized protein FLJ39639##BC104943|FLJ39639|283876|uncharacterized protein FLJ39639##AK096958|FLJ39639|283876|uncharacterized protein FLJ39639##FJ785717|MEFV|4210|Mediterranean fever##FJ785718|MEFV|4210|Mediterranean fever##FJ785719|MEFV|4210|Mediterranean fever##FJ785720|MEFV|4210|Mediterranean fever##FJ785721|MEFV|4210|Mediterranean fever##FJ785722|MEFV|4210|Mediterranean fever##BC101511|MEFV|4210|Mediterranean fever##BC101537|MEFV|4210|Mediterranean fever##Y14441|MEFV|4210|Mediterranean fever##AK298660|MEFV|4210|Mediterranean fever##AF018080|MEFV|4210|Mediterranean fever##NM_000243|MEFV|4210|Mediterranean fever##NM_001198536|MEFV|4210|Mediterranean fever##Y14443|ZNF200|7752|zinc finger protein 200##BC054005|ZNF200|7752|zinc finger protein 200##NM_001145448|ZNF200|7752|zinc finger protein 200##NM_198088|ZNF200|7752|zinc finger protein 200##NM_001145446|ZNF200|7752|zinc finger protein 200##NM_198087|ZNF200|7752|zinc finger protein 200##BC008805|ZNF263|10127|zinc finger protein 263##NM_005741|ZNF263|10127|zinc finger protein 263##AK312421|ZNF263|10127|zinc finger protein 263##D88827|ZNF263|10127|zinc finger protein 263##NM_033208|TIGD7|91151|tigger transposable element derived 7	0.656937	denovo_WM_21:-62:0.657
chr6	52529077	52529174	reg1000654.p1	6.437	+	AK095117 TSC_hg19_v1_chr6_+_52442225	-86951	+	TSC_hg19_v1_chr6_-_52441859 AK291751 AB621814 BC028121 NM_012288	-87274	-	DQ891068 DQ894250 D31762 TSC_hg19_v1_chr6_-_52441798	-87367	-	TSC_hg19_v1_chr6_+_52529228 AK091117	103	+	TSC_hg19_v1_chr6_+_52535913 NM_014051 AF239771 AK312063 BC015097 BC019328	6798	+	AK292602 AK313601 M16594 BC002895 NM_000846	99191	-	AK095117|FLJ37798|401264|uncharacterized LOC401264##AK291751|TRAM2|9697|translocation associated membrane protein 2##BC028121|TRAM2|9697|translocation associated membrane protein 2##NM_012288|TRAM2|9697|translocation associated membrane protein 2##DQ891068|TRAM2|9697|translocation associated membrane protein 2##DQ894250|TRAM2|9697|translocation associated membrane protein 2##D31762|TRAM2|9697|translocation associated membrane protein 2##AK091117|LOC730101|730101|uncharacterized LOC730101##NM_014051|TMEM14A|28978|transmembrane protein 14A##AF239771|TMEM14A|28978|transmembrane protein 14A##AK312063|TMEM14A|28978|transmembrane protein 14A##BC015097|TMEM14A|28978|transmembrane protein 14A##BC019328|TMEM14A|28978|transmembrane protein 14A##AK292602|GSTA2|2939|glutathione S-transferase alpha 2##AK313601|GSTA2|2939|glutathione S-transferase alpha 2##M16594|GSTA2|2939|glutathione S-transferase alpha 2##BC002895|GSTA2|2939|glutathione S-transferase alpha 2##NM_000846|GSTA2|2939|glutathione S-transferase alpha 2	0.730872	denovo_WM_21:25:0.668
chr17	73775992	73776146	reg1000579.p2	6.435	+	BC108701 AF218029 BC001124 BC006497 BC012813 BC017558 TSC_hg19_v1_chr17_-_73775861 BX647280 AK130772 AK304607 AK312762 BX537379 NM_005324	-228	-	L05088 TSC_hg19_v1_chr17_-_73774461	-1614	-	BT007005 CU674592 TSC_hg19_v1_chr17_-_73761274 U26401 AK316181 AK314890 AK303748 BC001166 AK130064 AK310203 NM_000154 AK303832	-14788	-	TSC_hg19_v1_chr17_+_73780918 AK307289 NM_001080419 BC046175 BC039606 BC064927 AB051540 BC053362 BC033751	4821	+	TSC_hg19_v1_chr17_+_73780952 BC080657 AB384286	4880	+	EU831417 EU831510 TSC_hg19_v1_chr17_-_73840455 AK301529 AJ578444	64380	-	BC108701|H3F3B|3021|H3 histone, family 3B (H3.3B)##AF218029|H3F3B|3021|H3 histone, family 3B (H3.3B)##BC001124|H3F3B|3021|H3 histone, family 3B (H3.3B)##BC006497|H3F3B|3021|H3 histone, family 3B (H3.3B)##BC012813|H3F3B|3021|H3 histone, family 3B (H3.3B)##BC017558|H3F3B|3021|H3 histone, family 3B (H3.3B)##BX647280|H3F3B|3021|H3 histone, family 3B (H3.3B)##AK130772|H3F3B|3021|H3 histone, family 3B (H3.3B)##AK304607|H3F3B|3021|H3 histone, family 3B (H3.3B)##AK312762|H3F3B|3021|H3 histone, family 3B (H3.3B)##BX537379|H3F3B|3021|H3 histone, family 3B (H3.3B)##NM_005324|H3F3B|3021|H3 histone, family 3B (H3.3B)##BT007005|GALK1|2584|galactokinase 1##U26401|GALK1|2584|galactokinase 1##AK316181|GALK1|2584|galactokinase 1##AK314890|GALK1|2584|galactokinase 1##AK303748|GALK1|2584|galactokinase 1##BC001166|GALK1|2584|galactokinase 1##AK130064|GALK1|2584|galactokinase 1##AK310203|GALK1|2584|galactokinase 1##NM_000154|GALK1|2584|galactokinase 1##AK303832|GALK1|2584|galactokinase 1##AK307289|UNK|85451|unkempt homolog (Drosophila)##NM_001080419|UNK|85451|unkempt homolog (Drosophila)##BC046175|UNK|85451|unkempt homolog (Drosophila)##BC039606|UNK|85451|unkempt homolog (Drosophila)##BC064927|UNK|85451|unkempt homolog (Drosophila)##AB051540|UNK|85451|unkempt homolog (Drosophila)##BC053362|UNK|85451|unkempt homolog (Drosophila)##BC033751|UNK|85451|unkempt homolog (Drosophila)##BC080657|UNK|85451|unkempt homolog (Drosophila)##EU831417|UNC13D|201294|unc-13 homolog D (C. elegans)##EU831510|UNC13D|201294|unc-13 homolog D (C. elegans)##AK301529|UNC13D|201294|unc-13 homolog D (C. elegans)##AJ578444|UNC13D|201294|unc-13 homolog D (C. elegans)	2.27098	denovo_WM_21:-19:0.966	denovo_WM_21:33:0.236	denovo_WM_21:63:0.975
chr2	239197480	239197606	reg1000832.p1	6.428	+	AB002345 AK294876 NM_022817 TSC_hg19_v1_chr2_-_239197345	-323	-	TSC_hg19_v1_chr2_-_239148680 BC007939 AK075040 AK293111 NM_001142853 NM_018645	-48885	-	AB035179 AB463715 TSC_hg19_v1_chr2_-_239148612 AF260237	-48965	-	TSC_hg19_v1_chr2_+_239229037 AF242456	31516	+	TSC_hg19_v1_chr2_+_239229202 BC059174 NM_001139490 NM_015650	31632	+	TSC_hg19_v1_chr2_+_239229215 AB590948 CU691344 AF230877	31715	+	AB002345|PER2|8864|period homolog 2 (Drosophila)##AK294876|PER2|8864|period homolog 2 (Drosophila)##NM_022817|PER2|8864|period homolog 2 (Drosophila)##BC007939|HES6|55502|hairy and enhancer of split 6 (Drosophila)##AK075040|HES6|55502|hairy and enhancer of split 6 (Drosophila)##AK293111|HES6|55502|hairy and enhancer of split 6 (Drosophila)##NM_001142853|HES6|55502|hairy and enhancer of split 6 (Drosophila)##NM_018645|HES6|55502|hairy and enhancer of split 6 (Drosophila)##AB035179|HES6|55502|hairy and enhancer of split 6 (Drosophila)##AF260237|HES6|55502|hairy and enhancer of split 6 (Drosophila)##AF242456|TRAF3IP1|26146|TNF receptor-associated factor 3 interacting protein 1##BC059174|TRAF3IP1|26146|TNF receptor-associated factor 3 interacting protein 1##NM_001139490|TRAF3IP1|26146|TNF receptor-associated factor 3 interacting protein 1##NM_015650|TRAF3IP1|26146|TNF receptor-associated factor 3 interacting protein 1##AF230877|TRAF3IP1|26146|TNF receptor-associated factor 3 interacting protein 1	0.280004	denovo_WM_21:-58:0.205
chr11	63741807	63741972	reg1000829.p1	6.423	+	TSC_hg19_v1_chr11_+_63706473 NM_024771 AK023910 AK300451 AK303557 JF263566 BC041617 BC052298	-35405	+	TSC_hg19_v1_chr11_-_63684632 AB593132	-57250	-	BC023587 NM_173587	-57574	-	TSC_hg19_v1_chr11_+_63742069 BC063025 NM_004074 BC000501 AK311934 BT009803 CR407687	194	+	AK098029 NM_017670	11435	+	TSC_hg19_v1_chr11_+_63753896 AK000120	11972	+	NM_024771|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##AK023910|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##AK300451|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##AK303557|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##JF263566|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##BC041617|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##BC052298|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##AB593132|RCOR2|283248|REST corepressor 2##BC023587|RCOR2|283248|REST corepressor 2##NM_173587|RCOR2|283248|REST corepressor 2##BC063025|COX8A|1351|cytochrome c oxidase subunit VIIIA (ubiquitous)##NM_004074|COX8A|1351|cytochrome c oxidase subunit VIIIA (ubiquitous)##BC000501|COX8A|1351|cytochrome c oxidase subunit VIIIA (ubiquitous)##AK311934|COX8A|1351|cytochrome c oxidase subunit VIIIA (ubiquitous)##BT009803|COX8A|1351|cytochrome c oxidase subunit VIIIA (ubiquitous)##CR407687|COX8A|1351|cytochrome c oxidase subunit VIIIA (ubiquitous)##AK098029|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##NM_017670|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##AK000120|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1	0.04745	
chr20	37554876	37554998	reg1000716.p2	6.420	+	TSC_hg19_v1_chr20_+_37434351 AB020630 BC152467 NM_001172735 NM_015568 AK311244 BC131801	-120583	+	BC038402 NM_024855 TSC_hg19_v1_chr20_+_37377109 AK022847	-177825	+	TSC_hg19_v1_chr20_+_37353128 AK055051 BC053582	-201778	+	AK055793 NM_030919 TSC_hg19_v1_chr20_+_37555024	52	+	TSC_hg19_v1_chr20_+_37555059 AK303860 BC001068 BC006553 BC080188 BC063661 BC053683	131	+	TSC_hg19_v1_chr20_+_37590995 NM_001190809 NM_021931 AK303396 BC132669 BC143941 BC059369 AK307863 BC033453 AK296506 AK026412 HQ258480 AK296793	36052	+	AB020630|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##BC152467|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##NM_001172735|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##NM_015568|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##BC131801|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##BC038402|ACTR5|79913|ARP5 actin-related protein 5 homolog (yeast)##NM_024855|ACTR5|79913|ARP5 actin-related protein 5 homolog (yeast)##AK022847|ACTR5|79913|ARP5 actin-related protein 5 homolog (yeast)##AK055051|SLC32A1|140679|solute carrier family 32 (GABA vesicular transporter), member 1##BC053582|SLC32A1|140679|solute carrier family 32 (GABA vesicular transporter), member 1##AK055793|FAM83D|81610|family with sequence similarity 83, member D##NM_030919|FAM83D|81610|family with sequence similarity 83, member D##AK303860|FAM83D|81610|family with sequence similarity 83, member D##BC001068|FAM83D|81610|family with sequence similarity 83, member D##BC006553|FAM83D|81610|family with sequence similarity 83, member D##BC080188|FAM83D|81610|family with sequence similarity 83, member D##BC063661|FAM83D|81610|family with sequence similarity 83, member D##BC053683|FAM83D|81610|family with sequence similarity 83, member D##NM_001190809|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##NM_021931|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK303396|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC132669|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC143941|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC059369|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK307863|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC033453|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK296506|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK026412|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##HQ258480|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK296793|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35	0.972026	denovo_WM_21:28:0.972
chr18	47018931	47019078	reg1000686.p1	6.419	+	TSC_hg19_v1_chr18_-_47018852 AK304659 AK311828 BC066323 BC017831 BC066324 NM_000985 NM_001035006 NM_001199340 NM_001199345 NM_001199356	-116	-	TSC_hg19_v1_chr18_-_47018826 NM_001199341 NM_001199342 NM_001199343 NM_001199344 BC000502	-175	-	TSC_hg19_v1_chr18_-_47018813 AK311720	-206	-	TSC_hg19_v1_chr18_+_47087059 AK125344	68058	+	AK315252 TSC_hg19_v1_chr18_+_47088426 AF118767 AK291799 NM_006033 AK300333 BC060825 AY358928	69424	+	CU674934 DQ893376 DQ896697 AB529169 BC001918 TSC_hg19_v1_chr18_-_47339904 AK225457 D16294	320910	-	AK304659|RPL17|6139|ribosomal protein L17##AK311828|RPL17|6139|ribosomal protein L17##BC066323|RPL17|6139|ribosomal protein L17##BC017831|RPL17|6139|ribosomal protein L17##BC066324|RPL17|6139|ribosomal protein L17##NM_000985|RPL17|6139|ribosomal protein L17##NM_001035006|RPL17|6139|ribosomal protein L17##NM_001199340|RPL17|6139|ribosomal protein L17##NM_001199345|RPL17|6139|ribosomal protein L17##NM_001199356|RPL17-C18ORF32|100526842|RPL17-C18orf32 readthrough##NM_001199341|RPL17|6139|ribosomal protein L17##NM_001199342|RPL17|6139|ribosomal protein L17##NM_001199343|RPL17|6139|ribosomal protein L17##NM_001199344|RPL17|6139|ribosomal protein L17##BC000502|RPL17|6139|ribosomal protein L17##AK311720|RPL17|6139|ribosomal protein L17##AK125344|LIPG|9388|lipase, endothelial##AK315252|LIPG|9388|lipase, endothelial##AF118767|LIPG|9388|lipase, endothelial##AK291799|LIPG|9388|lipase, endothelial##NM_006033|LIPG|9388|lipase, endothelial##AK300333|LIPG|9388|lipase, endothelial##BC060825|LIPG|9388|lipase, endothelial##AY358928|LIPG|9388|lipase, endothelial##DQ893376|ACAA2|10449|acetyl-CoA acyltransferase 2##DQ896697|ACAA2|10449|acetyl-CoA acyltransferase 2##BC001918|ACAA2|10449|acetyl-CoA acyltransferase 2##AK225457|ACAA2|10449|acetyl-CoA acyltransferase 2##D16294|ACAA2|10449|acetyl-CoA acyltransferase 2	0.0	
chr22	20008478	20008597	reg1000636.p1	6.416	+	TSC_hg19_v1_chr22_-_20004347 NM_001670 U51269	-4214	-	AB462972 BT007125 CR456997 CU012983 CU013271 CU680120 DQ893411 DQ896732 FJ410132 TSC_hg19_v1_chr22_+_19950078 NM_007310 EF217321 EF217322 EF212883 FJ410131 CU674210	-58355	+	NM_001135162 BC100018	-69489	+	TSC_hg19_v1_chr22_+_20008632 AK316056 BC041339 NM_152906 AK301054 AK301366 AK311676	80	+	AK297922 AK298593 TSC_hg19_v1_chr22_+_20008634 AK297075 AK316020 AK092484 AX747566 CR627452	106	+	TSC_hg19_v1_chr22_+_20067801 NM_001190326 NM_022720 AK313357 BC037564 BC009984	59245	+	NM_001670|ARVCF|421|armadillo repeat gene deleted in velocardiofacial syndrome##U51269|ARVCF|421|armadillo repeat gene deleted in velocardiofacial syndrome##BT007125|COMT|1312|catechol-O-methyltransferase##CR456997|COMT|1312|catechol-O-methyltransferase##CU012983|COMT|1312|catechol-O-methyltransferase##CU013271|COMT|1312|catechol-O-methyltransferase##DQ893411|COMT|1312|catechol-O-methyltransferase##DQ896732|COMT|1312|catechol-O-methyltransferase##FJ410132|COMT|1312|catechol-O-methyltransferase##NM_007310|COMT|1312|catechol-O-methyltransferase##EF217321|COMT|1312|catechol-O-methyltransferase##EF217322|COMT|1312|catechol-O-methyltransferase##FJ410131|COMT|1312|catechol-O-methyltransferase##NM_001135162|COMT|1312|catechol-O-methyltransferase##BC100018|COMT|1312|catechol-O-methyltransferase##AK316056|C22orf25|128989|chromosome 22 open reading frame 25##BC041339|C22orf25|128989|chromosome 22 open reading frame 25##NM_152906|C22orf25|128989|chromosome 22 open reading frame 25##AK301054|C22orf25|128989|chromosome 22 open reading frame 25##AK301366|C22orf25|128989|chromosome 22 open reading frame 25##AK311676|C22orf25|128989|chromosome 22 open reading frame 25##AK297922|C22orf25|128989|chromosome 22 open reading frame 25##AK298593|C22orf25|128989|chromosome 22 open reading frame 25##AK297075|C22orf25|128989|chromosome 22 open reading frame 25##AK316020|C22orf25|128989|chromosome 22 open reading frame 25##AK092484|C22orf25|128989|chromosome 22 open reading frame 25##CR627452|C22orf25|128989|chromosome 22 open reading frame 25##NM_001190326|DGCR8|54487|DiGeorge syndrome critical region gene 8##NM_022720|DGCR8|54487|DiGeorge syndrome critical region gene 8##AK313357|DGCR8|54487|DiGeorge syndrome critical region gene 8##BC037564|DGCR8|54487|DiGeorge syndrome critical region gene 8##BC009984|DGCR8|54487|DiGeorge syndrome critical region gene 8	0.0	
chr8	144450859	144450957	reg1000625.p1	6.408	+	AF349017 NM_052963 TSC_hg19_v1_chr8_-_144417051	-33853	-	TSC_hg19_v1_chr8_-_144417034 AK303237 AK315913 AK308475 AK311647 BC071914 BC044646 BC052285	-33893	-	TSC_hg19_v1_chr8_+_144373586 NM_030895 AK024191 BC126317	-77236	+	TSC_hg19_v1_chr8_+_144451016 NM_052924 BC012135 BC025767 AB528055 AY082588 CU693058 AB067516	182	+	NM_201589	61693	-	D63484 TSC_hg19_v1_chr8_-_144623602 BC038670	172683	-	AF349017|TOP1MT|116447|topoisomerase (DNA) I, mitochondrial##NM_052963|TOP1MT|116447|topoisomerase (DNA) I, mitochondrial##AK303237|TOP1MT|116447|topoisomerase (DNA) I, mitochondrial##AK315913|TOP1MT|116447|topoisomerase (DNA) I, mitochondrial##AK308475|TOP1MT|116447|topoisomerase (DNA) I, mitochondrial##AK311647|TOP1MT|116447|topoisomerase (DNA) I, mitochondrial##BC071914|TOP1MT|116447|topoisomerase (DNA) I, mitochondrial##BC044646|TOP1MT|116447|topoisomerase (DNA) I, mitochondrial##BC052285|TOP1MT|116447|topoisomerase (DNA) I, mitochondrial##NM_030895|ZNF696|79943|zinc finger protein 696##AK024191|ZNF696|79943|zinc finger protein 696##BC126317|ZNF696|79943|zinc finger protein 696##NM_052924|RHPN1|114822|rhophilin, Rho GTPase binding protein 1##BC012135|RHPN1|114822|rhophilin, Rho GTPase binding protein 1##BC025767|RHPN1|114822|rhophilin, Rho GTPase binding protein 1##AY082588|RHPN1|114822|rhophilin, Rho GTPase binding protein 1##AB067516|RHPN1|114822|rhophilin, Rho GTPase binding protein 1##NM_201589|MAFA|389692|v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)##D63484|ZC3H3|23144|zinc finger CCCH-type containing 3##BC038670|ZC3H3|23144|zinc finger CCCH-type containing 3	0.63104	denovo_WM_21:-1:0.620
chr13	28194733	28194852	reg1000785.p1	6.405	+	TSC_hg19_v1_chr13_-_28194723 AK313394 NM_153371	-65	-	BC036755 TSC_hg19_v1_chr13_-_28194667	-188	-	AF265440 TSC_hg19_v1_chr13_-_28024702 BC046166 NM_001166263 NM_152912	-170070	-	TSC_hg19_v1_chr13_+_28194948 NM_001206559 AK307356	173	+	TSC_hg19_v1_chr13_+_28195913 NM_015972 NM_152705	1140	+	TSC_hg19_v1_chr13_+_28195996 BC018528	1189	+	AK313394|LNX2|222484|ligand of numb-protein X 2##NM_153371|LNX2|222484|ligand of numb-protein X 2##BC036755|LNX2|222484|ligand of numb-protein X 2##BC046166|MTIF3|219402|mitochondrial translational initiation factor 3##NM_001166263|MTIF3|219402|mitochondrial translational initiation factor 3##NM_152912|MTIF3|219402|mitochondrial translational initiation factor 3##NM_001206559|POLR1D|51082|polymerase (RNA) I polypeptide D, 16kDa##AK307356|POLR1D|51082|polymerase (RNA) I polypeptide D, 16kDa##NM_015972|POLR1D|51082|polymerase (RNA) I polypeptide D, 16kDa##NM_152705|POLR1D|51082|polymerase (RNA) I polypeptide D, 16kDa##BC018528|POLR1D|51082|polymerase (RNA) I polypeptide D, 16kDa	0.971564	denovo_WM_21:-23:0.972
chr19	19976559	19976677	reg1000592.p1	6.402	+	TSC_hg19_v1_chr19_-_19932557 AL136548 BC018100 BC034920 AK122848 AK095575 NM_001099269 NM_001145404	-44066	-	BC034236 AK289657 TSC_hg19_v1_chr19_-_19887212 BC037856	-89413	-	AB464375 BC136323 AB021644 AK074832 TSC_hg19_v1_chr19_-_19843919 AK125668 NM_021030	-132771	-	TSC_hg19_v1_chr19_+_19976658 BC053607 BC014148 NM_021047 BC065572 AK074757 BC125063 BC125064	66	+	TSC_hg19_v1_chr19_+_20011754 NM_031218 BC020837 BC070372 BC107581 AK096342 BC058821 BC038096 BC136718 BC136719	35166	+	AK098164 NM_001077349	173420	-	AL136548|ZNF506|440515|zinc finger protein 506##BC018100|ZNF506|440515|zinc finger protein 506##BC034920|ZNF506|440515|zinc finger protein 506##AK122848|ZNF506|440515|zinc finger protein 506##AK095575|ZNF506|440515|zinc finger protein 506##NM_001099269|ZNF506|440515|zinc finger protein 506##NM_001145404|ZNF506|440515|zinc finger protein 506##BC034236|LOC284440|284440|uncharacterized LOC284440##AK289657|LOC284440|284440|uncharacterized LOC284440##BC037856|LOC284440|284440|uncharacterized LOC284440##BC136323|ZNF14|7561|zinc finger protein 14##AB021644|ZNF14|7561|zinc finger protein 14##AK074832|ZNF14|7561|zinc finger protein 14##NM_021030|ZNF14|7561|zinc finger protein 14##BC053607|ZNF253|56242|zinc finger protein 253##BC014148|ZNF253|56242|zinc finger protein 253##NM_021047|ZNF253|56242|zinc finger protein 253##BC065572|ZNF253|56242|zinc finger protein 253##AK074757|ZNF253|56242|zinc finger protein 253##BC125063|ZNF253|56242|zinc finger protein 253##BC125064|ZNF253|56242|zinc finger protein 253##NM_031218|ZNF93|81931|zinc finger protein 93##BC020837|ZNF93|81931|zinc finger protein 93##BC070372|ZNF93|81931|zinc finger protein 93##BC107581|ZNF93|81931|zinc finger protein 93##AK096342|ZNF93|81931|zinc finger protein 93##BC058821|ZNF93|81931|zinc finger protein 93##BC038096|ZNF93|81931|zinc finger protein 93##BC136718|ZNF93|81931|zinc finger protein 93##BC136719|ZNF93|81931|zinc finger protein 93##AK098164|ZNF682|91120|zinc finger protein 682##NM_001077349|ZNF682|91120|zinc finger protein 682	0.750587	denovo_WM_21:-27:0.740
chr17	73043062	73043201	reg1000535.p2	6.399	+	BC032245 TSC_hg19_v1_chr17_-_73043079	-52	-	TSC_hg19_v1_chr17_-_73043063 AF070650 BC029392 AF061735 BC038092 AF087135 AK312230 NM_001003785 NM_006356	-73	-	TSC_hg19_v1_chr17_+_73028670 AK311278 AK307083	-14443	+	TSC_hg19_v1_chr17_+_73043288 BC033329 NM_015353	98	+	TSC_hg19_v1_chr17_+_73043325 D79998	202	+	TSC_hg19_v1_chr17_+_73084056 BC009684 NM_004695	40924	+	BC032245|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d##AF070650|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d##BC029392|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d##AF061735|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d##BC038092|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d##AF087135|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d##AK312230|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d##NM_001003785|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d##NM_006356|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d##AK307083|KCTD2|23510|potassium channel tetramerisation domain containing 2##BC033329|KCTD2|23510|potassium channel tetramerisation domain containing 2##NM_015353|KCTD2|23510|potassium channel tetramerisation domain containing 2##D79998|KCTD2|23510|potassium channel tetramerisation domain containing 2##BC009684|SLC16A5|9121|solute carrier family 16, member 5 (monocarboxylic acid transporter 6)##NM_004695|SLC16A5|9121|solute carrier family 16, member 5 (monocarboxylic acid transporter 6)	0.369588	denovo_WM_21:9:0.370
chr19	11491945	11492088	reg1000794.p1	6.398	+	BC068071 AK092438 AX747546 NM_175871 BC119677	-6643	+	AK094869 TSC_hg19_v1_chr19_+_11466173 BC009378	-25821	+	NM_001170635 NM_022737 TSC_hg19_v1_chr19_+_11466107 AK023117 AY304516 AK225482	-25901	+	M34986 AB527807 BC112153 BC143697 BC143698 BC143700 AK315097 M60459 BC019092 NM_000121	2933	-	AK074082 TSC_hg19_v1_chr19_-_11529991 BC064475 AK057147 AK293404 AK298281 BC101756 BC111958 BC143530 BC014426 NM_001035223 NM_001161616	37972	-	AK056363 BC141828 BC142637 AK294355 AK308072 NM_145045 BC036041 BC050355	53933	-	BC068071|SWSAP1|126074|SWIM-type zinc finger 7 associated protein 1##AK092438|SWSAP1|126074|SWIM-type zinc finger 7 associated protein 1##NM_175871|SWSAP1|126074|SWIM-type zinc finger 7 associated protein 1##BC119677|SWSAP1|126074|SWIM-type zinc finger 7 associated protein 1##AK094869|LPPR2|64748|lipid phosphate phosphatase-related protein type 2##BC009378|LPPR2|64748|lipid phosphate phosphatase-related protein type 2##NM_001170635|LPPR2|64748|lipid phosphate phosphatase-related protein type 2##NM_022737|LPPR2|64748|lipid phosphate phosphatase-related protein type 2##AK023117|LPPR2|64748|lipid phosphate phosphatase-related protein type 2##AY304516|LPPR2|64748|lipid phosphate phosphatase-related protein type 2##AK225482|LPPR2|64748|lipid phosphate phosphatase-related protein type 2##M34986|EPOR|2057|erythropoietin receptor##BC112153|EPOR|2057|erythropoietin receptor##BC143697|EPOR|2057|erythropoietin receptor##BC143698|EPOR|2057|erythropoietin receptor##BC143700|EPOR|2057|erythropoietin receptor##AK315097|EPOR|2057|erythropoietin receptor##M60459|EPOR|2057|erythropoietin receptor##BC019092|EPOR|2057|erythropoietin receptor##NM_000121|EPOR|2057|erythropoietin receptor##BC064475|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##AK057147|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##AK293404|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##AK298281|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##BC101756|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##BC111958|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##BC143530|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##BC014426|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##NM_001035223|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##NM_001161616|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##AK056363|CCDC151|115948|coiled-coil domain containing 151##BC141828|CCDC151|115948|coiled-coil domain containing 151##BC142637|CCDC151|115948|coiled-coil domain containing 151##AK294355|CCDC151|115948|coiled-coil domain containing 151##AK308072|CCDC151|115948|coiled-coil domain containing 151##NM_145045|CCDC151|115948|coiled-coil domain containing 151##BC036041|CCDC151|115948|coiled-coil domain containing 151##BC050355|CCDC151|115948|coiled-coil domain containing 151	2.89962	denovo_WM_21:-5:0.961	denovo_WM_21:33:0.988	denovo_WM_21:-49:0.951
chr1	46713316	46713407	reg1000337.p1	6.388	+	CR749700 AK056186 NM_001243766	-27392	-	AK057892 NM_001013615 TSC_hg19_v1_chr1_+_46669021 BC034422 AB463505	-44310	+	TSC_hg19_v1_chr1_-_46664112 BC001471 NM_017739	-49236	-	TSC_hg19_v1_chr1_+_46713362 NM_001142548 NM_003579	7	+	TSC_hg19_v1_chr1_+_46713388 AK292611	25	+	TSC_hg19_v1_chr1_+_46713434 AK297204	78	+	CR749700|POMGNT1|55624|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase##AK056186|POMGNT1|55624|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase##NM_001243766|POMGNT1|55624|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase##AK057892|C1orf190|541468|chromosome 1 open reading frame 190##NM_001013615|C1orf190|541468|chromosome 1 open reading frame 190##BC034422|C1orf190|541468|chromosome 1 open reading frame 190##BC001471|POMGNT1|55624|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase##NM_017739|POMGNT1|55624|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase##NM_001142548|RAD54L|8438|RAD54-like (S. cerevisiae)##NM_003579|RAD54L|8438|RAD54-like (S. cerevisiae)##AK292611|RAD54L|8438|RAD54-like (S. cerevisiae)##AK297204|RAD54L|8438|RAD54-like (S. cerevisiae)	0.627657	denovo_WM_21:0:0.612
chr4	83956052	83956203	reg1000853.p1	6.385	+	TSC_hg19_v1_chr4_-_83934095 AK292769 NM_001115007	-22099	-	AB111889 BX640657 TSC_hg19_v1_chr4_-_83931982 BX640966 NM_001115008 NM_194282	-24133	-	BC109278 BC109277 BX537919 TSC_hg19_v1_chr4_-_83931937 AK294256	-24216	-	NM_016129 AK001148 TSC_hg19_v1_chr4_+_83956368 AK024005 BC093007 AK223178 BC004302 BC009292 AB587420 AF100757 AK001210	197	+	BC012205 NM_001130716	74876	-	AF208846 EU570985 EU570986 TSC_hg19_v1_chr4_-_84035890 AJ422147	79764	-	AK292769|LIN54|132660|lin-54 homolog (C. elegans)##NM_001115007|LIN54|132660|lin-54 homolog (C. elegans)##AB111889|LIN54|132660|lin-54 homolog (C. elegans)##BX640657|LIN54|132660|lin-54 homolog (C. elegans)##BX640966|LIN54|132660|lin-54 homolog (C. elegans)##NM_001115008|LIN54|132660|lin-54 homolog (C. elegans)##NM_194282|LIN54|132660|lin-54 homolog (C. elegans)##BC109278|LIN54|132660|lin-54 homolog (C. elegans)##BC109277|LIN54|132660|lin-54 homolog (C. elegans)##BX537919|LIN54|132660|lin-54 homolog (C. elegans)##AK294256|LIN54|132660|lin-54 homolog (C. elegans)##NM_016129|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##AK001148|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##AK024005|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##BC093007|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##AK223178|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##BC004302|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##BC009292|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##AF100757|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##AK001210|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##BC012205|PLAC8|51316|placenta-specific 8##NM_001130716|PLAC8|51316|placenta-specific 8##AF208846|PLAC8|51316|placenta-specific 8##EU570985|PLAC8|51316|placenta-specific 8##EU570986|PLAC8|51316|placenta-specific 8##AJ422147|PLAC8|51316|placenta-specific 8	0.277137	denovo_WM_21:0:0.258
chr10	111970968	111971119	reg1000679.p1	6.382	+	BC012907 NM_001008541	-1055	+	TSC_hg19_v1_chr10_+_111967381 BC035128 NM_130439	-3684	+	AK291488 TSC_hg19_v1_chr10_+_111767988 U37122 BC043143	-203076	+	TSC_hg19_v1_chr10_+_111985824 AK303949 NM_005962 CR536576 AK309718	14778	+	BC039110 TSC_hg19_v1_chr10_-_112064679 AK314013 AF107463	93550	-	TSC_hg19_v1_chr10_-_112064705 BC011234 NM_005871	93657	-	BC012907|MXI1|4601|MAX interactor 1##NM_001008541|MXI1|4601|MAX interactor 1##BC035128|MXI1|4601|MAX interactor 1##NM_130439|MXI1|4601|MAX interactor 1##AK291488|ADD3|120|adducin 3 (gamma)##U37122|ADD3|120|adducin 3 (gamma)##BC043143|ADD3|120|adducin 3 (gamma)##AK303949|MXI1|4601|MAX interactor 1##NM_005962|MXI1|4601|MAX interactor 1##CR536576|MXI1|4601|MAX interactor 1##AK309718|MXI1|4601|MAX interactor 1##BC039110|SMNDC1|10285|survival motor neuron domain containing 1##AK314013|SMNDC1|10285|survival motor neuron domain containing 1##AF107463|SMNDC1|10285|survival motor neuron domain containing 1##BC011234|SMNDC1|10285|survival motor neuron domain containing 1##NM_005871|SMNDC1|10285|survival motor neuron domain containing 1	0.929012	denovo_WM_21:9:0.910
chr1	149814345	149814437	reg1000584.p1	6.380	+	BC096705 BC096739 BC098171 CR536525 CR541872 AB528799 CU674796 EU831480 EU831567 BC001629 BC019308 AK312163 L19779 NM_001040874 NM_003516	-101	-	AB463739 BC074969 BC130635 BC130637 BC015544 NM_001005464 NM_021059	-1643	-	AK316561 NM_001034077 NM_003548 BC093969 BC112193 BC108260 BC019846 AB590914 CR542172	-10157	+	L19779 NM_001040874 NM_003516 AK312163 BC001629 BC019308 AB528799 CU674796 EU831480 EU831567 BC096705 BC096739 BC098171 CR536525 CR541872	8262	+	BC015544 NM_001005464 NM_021059 BC130635 BC130637 BC074969 AB463739	9804	+	CR542172 AB590914 BC019846 BC108260 BC093969 BC112193 AK316561 NM_001034077 NM_003548	18319	-	BC096705|HIST2H2AA3|8337|histone cluster 2, H2aa3##BC096739|HIST2H2AA3|8337|histone cluster 2, H2aa3##BC098171|HIST2H2AA3|8337|histone cluster 2, H2aa3##CR536525|HIST2H2AA3|8337|histone cluster 2, H2aa3##CR541872|HIST2H2AA3|8337|histone cluster 2, H2aa3##EU831480|HIST2H2AA4|723790|histone cluster 2, H2aa4##EU831567|HIST2H2AA4|723790|histone cluster 2, H2aa4##BC001629|HIST2H2AA3|8337|histone cluster 2, H2aa3##BC019308|HIST2H2AA3|8337|histone cluster 2, H2aa3##AK312163|HIST2H2AA3|8337|histone cluster 2, H2aa3##L19779|HIST2H2AA3|8337|histone cluster 2, H2aa3##NM_001040874|HIST2H2AA4|723790|histone cluster 2, H2aa4##NM_003516|HIST2H2AA3|8337|histone cluster 2, H2aa3##BC074969|HIST2H3C|126961|histone cluster 2, H3c##BC130635|HIST2H3C|126961|histone cluster 2, H3c##BC130637|HIST2H3C|126961|histone cluster 2, H3c##BC015544|HIST2H3C|126961|histone cluster 2, H3c##NM_001005464|HIST2H3A|333932|histone cluster 2, H3a##NM_021059|HIST2H3C|126961|histone cluster 2, H3c##NM_001034077|HIST2H4B|554313|histone cluster 2, H4b##NM_003548|HIST2H4A|8370|histone cluster 2, H4a##BC093969|HIST2H4A|8370|histone cluster 2, H4a##BC112193|HIST2H4A|8370|histone cluster 2, H4a##BC108260|HIST2H4A|8370|histone cluster 2, H4a##BC019846|HIST2H4A|8370|histone cluster 2, H4a##CR542172|HIST2H4A|8370|histone cluster 2, H4a##L19779|HIST2H2AA3|8337|histone cluster 2, H2aa3##NM_001040874|HIST2H2AA4|723790|histone cluster 2, H2aa4##NM_003516|HIST2H2AA3|8337|histone cluster 2, H2aa3##AK312163|HIST2H2AA3|8337|histone cluster 2, H2aa3##BC001629|HIST2H2AA3|8337|histone cluster 2, H2aa3##BC019308|HIST2H2AA3|8337|histone cluster 2, H2aa3##EU831480|HIST2H2AA4|723790|histone cluster 2, H2aa4##EU831567|HIST2H2AA4|723790|histone cluster 2, H2aa4##BC096705|HIST2H2AA3|8337|histone cluster 2, H2aa3##BC096739|HIST2H2AA3|8337|histone cluster 2, H2aa3##BC098171|HIST2H2AA3|8337|histone cluster 2, H2aa3##CR536525|HIST2H2AA3|8337|histone cluster 2, H2aa3##CR541872|HIST2H2AA3|8337|histone cluster 2, H2aa3##BC015544|HIST2H3C|126961|histone cluster 2, H3c##NM_001005464|HIST2H3A|333932|histone cluster 2, H3a##NM_021059|HIST2H3C|126961|histone cluster 2, H3c##BC130635|HIST2H3C|126961|histone cluster 2, H3c##BC130637|HIST2H3C|126961|histone cluster 2, H3c##BC074969|HIST2H3C|126961|histone cluster 2, H3c##CR542172|HIST2H4A|8370|histone cluster 2, H4a##BC019846|HIST2H4A|8370|histone cluster 2, H4a##BC108260|HIST2H4A|8370|histone cluster 2, H4a##BC093969|HIST2H4A|8370|histone cluster 2, H4a##BC112193|HIST2H4A|8370|histone cluster 2, H4a##NM_001034077|HIST2H4B|554313|histone cluster 2, H4b##NM_003548|HIST2H4A|8370|histone cluster 2, H4a	1.691301	denovo_WM_21:-8:0.966	denovo_WM_21:23:0.725
chr1	32757486	32757647	reg1000847.p1	6.373	+	NM_001042771 BC013200 AK303073 U07236 CU680550 DQ891675 DQ894861 AB527809 AJ865079 AF228313	-17726	+	NM_005356 TSC_hg19_v1_chr1_+_32716847 AK098027 X05027 U23852 M36881 X13529	-40681	+	NM_032648 BC004269	-44741	+	AK225555 TSC_hg19_v1_chr1_+_32757704 AK296308 AK313061	137	+	D50405 NM_004964 TSC_hg19_v1_chr1_+_32757707	142	+	TSC_hg19_v1_chr1_+_32757740 BC000301 AK299792 AY627042 AB451297 AB451430 AB463736 CR541717 CU674144 DQ891398 DQ894577	174	+	NM_001042771|LCK|3932|lymphocyte-specific protein tyrosine kinase##BC013200|LCK|3932|lymphocyte-specific protein tyrosine kinase##AK303073|LCK|3932|lymphocyte-specific protein tyrosine kinase##U07236|LCK|3932|lymphocyte-specific protein tyrosine kinase##DQ891675|LCK|3932|lymphocyte-specific protein tyrosine kinase##DQ894861|LCK|3932|lymphocyte-specific protein tyrosine kinase##AJ865079|LCK|3932|lymphocyte-specific protein tyrosine kinase##AF228313|LCK|3932|lymphocyte-specific protein tyrosine kinase##NM_005356|LCK|3932|lymphocyte-specific protein tyrosine kinase##AK098027|LCK|3932|lymphocyte-specific protein tyrosine kinase##X05027|LCK|3932|lymphocyte-specific protein tyrosine kinase##U23852|LCK|3932|lymphocyte-specific protein tyrosine kinase##M36881|LCK|3932|lymphocyte-specific protein tyrosine kinase##X13529|LCK|3932|lymphocyte-specific protein tyrosine kinase##NM_032648|FAM167B|84734|family with sequence similarity 167, member B##BC004269|FAM167B|84734|family with sequence similarity 167, member B##AK225555|HDAC1|3065|histone deacetylase 1##AK296308|HDAC1|3065|histone deacetylase 1##AK313061|HDAC1|3065|histone deacetylase 1##D50405|HDAC1|3065|histone deacetylase 1##NM_004964|HDAC1|3065|histone deacetylase 1##BC000301|HDAC1|3065|histone deacetylase 1##AK299792|HDAC1|3065|histone deacetylase 1##AY627042|HDAC1|3065|histone deacetylase 1##AB451297|HDAC1|3065|histone deacetylase 1##AB451430|HDAC1|3065|histone deacetylase 1##CR541717|HDAC1|3065|histone deacetylase 1##DQ891398|HDAC1|3065|histone deacetylase 1##DQ894577|HDAC1|3065|histone deacetylase 1	0.694486	denovo_WM_21:40:0.694
chr1	8938776	8938909	reg1000848.p1	6.364	+	TSC_hg19_v1_chr1_-_8938746 AK223192 BX537400 AK309291 AK315417	-80	-	BC015641 BC027725 TSC_hg19_v1_chr1_-_8938743 BC004458 BC009912 AK222517 BC022545 D28437	-107	-	BC001810 TSC_hg19_v1_chr1_-_8938710 AK098420 M14328 BC011130	-135	-	AK309177 NM_001428	308	-	NM_001215 AK300652 BC034350 M57892 AB102863 AB103091	67091	+	AB527336 AY571960 NM_207420	147561	-	AK223192|ENO1|2023|enolase 1, (alpha)##BX537400|ENO1|2023|enolase 1, (alpha)##AK309291|ENO1|2023|enolase 1, (alpha)##AK315417|ENO1|2023|enolase 1, (alpha)##BC015641|ENO1|2023|enolase 1, (alpha)##BC027725|ENO1|2023|enolase 1, (alpha)##BC004458|ENO1|2023|enolase 1, (alpha)##BC009912|ENO1|2023|enolase 1, (alpha)##AK222517|ENO1|2023|enolase 1, (alpha)##BC022545|ENO1|2023|enolase 1, (alpha)##D28437|ENO1|2023|enolase 1, (alpha)##BC001810|ENO1|2023|enolase 1, (alpha)##AK098420|ENO1|2023|enolase 1, (alpha)##M14328|ENO1|2023|enolase 1, (alpha)##BC011130|ENO1|2023|enolase 1, (alpha)##AK309177|ENO1|2023|enolase 1, (alpha)##NM_001428|ENO1|2023|enolase 1, (alpha)##NM_001215|CA6|765|carbonic anhydrase VI##AK300652|CA6|765|carbonic anhydrase VI##BC034350|CA6|765|carbonic anhydrase VI##M57892|CA6|765|carbonic anhydrase VI##AB102863|CA6|765|carbonic anhydrase VI##AB103091|CA6|765|carbonic anhydrase VI##AY571960|SLC2A7|155184|solute carrier family 2 (facilitated glucose transporter), member 7##NM_207420|SLC2A7|155184|solute carrier family 2 (facilitated glucose transporter), member 7	0.0	
chr8	46958050	46958154	reg1000669.p1	6.360	+	AY462869 AY462870 NM_001002920 NM_001005365 AB464430	-3810497	+	TSC_hg19_v1_chr8_+_42995654 BC042037	-3962455	+	TSC_hg19_v1_chr8_+_42995639 AK304441	-3962469	+	TSC_hg19_v1_chr8_+_48173495 NM_001080394	1215393	+	TSC_hg19_v1_chr8_+_48173521 AK303579	1215417	+	TSC_hg19_v1_chr8_+_48173532 AK294248 AK309842	1215430	+	AY462869|POTEA|340441|POTE ankyrin domain family, member A##AY462870|POTEA|340441|POTE ankyrin domain family, member A##NM_001002920|POTEA|340441|POTE ankyrin domain family, member A##NM_001005365|POTEA|340441|POTE ankyrin domain family, member A##BC042037|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase##AK304441|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase##NM_001080394|KIAA0146|23514|KIAA0146##AK303579|KIAA0146|23514|KIAA0146##AK294248|KIAA0146|23514|KIAA0146##AK309842|KIAA0146|23514|KIAA0146	0.0	
chr12	2999912	3000039	reg1000787.p2	6.358	+	TSC_hg19_v1_chr12_-_2986314 NM_001243088 NM_001243089 NM_021953 NM_202002 NM_202003	-13518	-	TSC_hg19_v1_chr12_+_2986385 NM_001252499 NM_001252500 AB073599 AK021945 AK299990 AK304613 AK315364 BC005106	-13586	+	TSC_hg19_v1_chr12_-_2986289 U83113 U74613 U74612 AK313845 BC006192 BC006529 AK291206	-13779	-	TSC_hg19_v1_chr12_+_3000056 AK024246 NM_001160408 NM_003324 AK293285 AK307434 AF045583 BC032587 CU689434 AB464323 EU446713	78	+	TSC_hg19_v1_chr12_+_3068645 NM_003213 NM_201441 AY101179 BC015497 AK222947 U63824 NM_201443	68619	+	TSC_hg19_v1_chr12_+_3069109 BX640921	69086	+	NM_001243088|FOXM1|2305|forkhead box M1##NM_001243089|FOXM1|2305|forkhead box M1##NM_021953|FOXM1|2305|forkhead box M1##NM_202002|FOXM1|2305|forkhead box M1##NM_202003|FOXM1|2305|forkhead box M1##NM_001252499|C12orf32|83695|chromosome 12 open reading frame 32##NM_001252500|C12orf32|83695|chromosome 12 open reading frame 32##AB073599|C12orf32|83695|chromosome 12 open reading frame 32##AK021945|C12orf32|83695|chromosome 12 open reading frame 32##AK304613|C12orf32|83695|chromosome 12 open reading frame 32##AK315364|C12orf32|83695|chromosome 12 open reading frame 32##BC005106|C12orf32|83695|chromosome 12 open reading frame 32##U83113|FOXM1|2305|forkhead box M1##U74613|FOXM1|2305|forkhead box M1##U74612|FOXM1|2305|forkhead box M1##AK313845|FOXM1|2305|forkhead box M1##BC006192|FOXM1|2305|forkhead box M1##BC006529|FOXM1|2305|forkhead box M1##AK291206|FOXM1|2305|forkhead box M1##AK024246|TULP3|7289|tubby like protein 3##NM_001160408|TULP3|7289|tubby like protein 3##NM_003324|TULP3|7289|tubby like protein 3##AK293285|TULP3|7289|tubby like protein 3##AK307434|TULP3|7289|tubby like protein 3##AF045583|TULP3|7289|tubby like protein 3##BC032587|TULP3|7289|tubby like protein 3##EU446713|TULP3|7289|tubby like protein 3##NM_003213|TEAD4|7004|TEA domain family member 4##NM_201441|TEAD4|7004|TEA domain family member 4##AY101179|TEAD4|7004|TEA domain family member 4##BC015497|TEAD4|7004|TEA domain family member 4##AK222947|TEAD4|7004|TEA domain family member 4##U63824|TEAD4|7004|TEA domain family member 4##NM_201443|TEAD4|7004|TEA domain family member 4##BX640921|TEAD4|7004|TEA domain family member 4	1.030777	denovo_WM_21:14:0.789	denovo_WM_21:-15:0.242
chr11	57434904	57435047	reg1000552.p1	6.356	+	NM_001142597 NM_006831 TSC_hg19_v1_chr11_+_57425244 AK313007 AK300232 BC000446	-9745	+	BC029228 BC104781 BC112119 BC064995 AB098738 AK054775 AK124577 NM_145008	-17644	-	TSC_hg19_v1_chr11_-_57414981 BC111012	-19962	-	TSC_hg19_v1_chr11_+_57435327 AY894889	396	+	TSC_hg19_v1_chr11_+_57435463 NM_015457 AB051535	500	+	BC026967 TSC_hg19_v1_chr11_+_57435567	593	+	NM_001142597|CLP1|10978|CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)##NM_006831|CLP1|10978|CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)##AK313007|CLP1|10978|CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)##AK300232|CLP1|10978|CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)##BC000446|CLP1|10978|CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)##BC029228|YPEL4|219539|yippee-like 4 (Drosophila)##BC104781|YPEL4|219539|yippee-like 4 (Drosophila)##BC112119|YPEL4|219539|yippee-like 4 (Drosophila)##BC064995|YPEL4|219539|yippee-like 4 (Drosophila)##AB098738|YPEL4|219539|yippee-like 4 (Drosophila)##AK054775|YPEL4|219539|yippee-like 4 (Drosophila)##AK124577|YPEL4|219539|yippee-like 4 (Drosophila)##NM_145008|YPEL4|219539|yippee-like 4 (Drosophila)##BC111012|YPEL4|219539|yippee-like 4 (Drosophila)##AY894889|ZDHHC5|25921|zinc finger, DHHC-type containing 5##NM_015457|ZDHHC5|25921|zinc finger, DHHC-type containing 5##AB051535|ZDHHC5|25921|zinc finger, DHHC-type containing 5##BC026967|ZDHHC5|25921|zinc finger, DHHC-type containing 5	0.088611	
chr5	112312273	112312390	reg1000782.p2	6.354	+	CU688102 AY562243 BC065926 TSC_hg19_v1_chr5_-_112257925 BC000232 M74090 AK295436 AK298268 AK299902 AK300048 AK312522 M73547 AX775929 BX648005 NM_005669	-54344	-	TSC_hg19_v1_chr5_+_112196983 AK311803 BC000186 X12791 AK313576 BC017830 BC010947 BC018669 AB587423	-115307	+	NM_001204193 NM_001204194 NM_001204196 NM_001204199 NM_003135 TSC_hg19_v1_chr5_+_112196975	-115402	+	TSC_hg19_v1_chr5_+_112312407 NM_001242377 NM_152624	74	+	TSC_hg19_v1_chr5_+_112312506 AY135173 AY146650 BC017965 AK296361 AK090564 AX746512 BC064593 BC068042 CU687920	197	+	M62397 AK096212 TSC_hg19_v1_chr5_-_112630346	317994	-	AY562243|REEP5|7905|receptor accessory protein 5##BC065926|REEP5|7905|receptor accessory protein 5##BC000232|REEP5|7905|receptor accessory protein 5##M74090|REEP5|7905|receptor accessory protein 5##AK295436|REEP5|7905|receptor accessory protein 5##AK298268|REEP5|7905|receptor accessory protein 5##AK299902|REEP5|7905|receptor accessory protein 5##AK312522|REEP5|7905|receptor accessory protein 5##BX648005|REEP5|7905|receptor accessory protein 5##NM_005669|REEP5|7905|receptor accessory protein 5##AK311803|SRP19|6728|signal recognition particle 19kDa##BC000186|SRP19|6728|signal recognition particle 19kDa##X12791|SRP19|6728|signal recognition particle 19kDa##BC017830|SRP19|6728|signal recognition particle 19kDa##BC010947|SRP19|6728|signal recognition particle 19kDa##BC018669|SRP19|6728|signal recognition particle 19kDa##NM_001204193|SRP19|6728|signal recognition particle 19kDa##NM_001204194|SRP19|6728|signal recognition particle 19kDa##NM_001204196|SRP19|6728|signal recognition particle 19kDa##NM_001204199|SRP19|6728|signal recognition particle 19kDa##NM_003135|SRP19|6728|signal recognition particle 19kDa##NM_001242377|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##NM_152624|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##AY135173|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##AY146650|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##BC017965|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##AK296361|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##AK090564|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##BC064593|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##BC068042|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##M62397|MCC|4163|mutated in colorectal cancers##AK096212|MCC|4163|mutated in colorectal cancers	0.684763	denovo_WM_21:1:0.242	denovo_WM_21:-13:0.389
chr6	112194664	112194807	reg1000800.p1	6.352	+	TSC_hg19_v1_chr6_-_112194648 NM_002037	-80	-	M14676 TSC_hg19_v1_chr6_-_112194641 M14333	-200	-	BC032496 NM_153048	-114427	-	BC012028 NM_003880 BC035250 NM_198239 BC105940 BC105941 AY358349 AF100781 AY358350 AB075040	180682	+	AF201334 CU689114 CU692994 DQ891503 DQ894695 BC025405 TSC_hg19_v1_chr6_-_112408705 BC031101 AK026242 NM_016262	213970	-	NM_001033564 TSC_hg19_v1_chr6_+_112408818 BC044912 AL049461	214046	+	NM_002037|FYN|2534|FYN oncogene related to SRC, FGR, YES##M14676|FYN|2534|FYN oncogene related to SRC, FGR, YES##M14333|FYN|2534|FYN oncogene related to SRC, FGR, YES##BC032496|FYN|2534|FYN oncogene related to SRC, FGR, YES##NM_153048|FYN|2534|FYN oncogene related to SRC, FGR, YES##BC012028|WISP3|8838|WNT1 inducible signaling pathway protein 3##NM_003880|WISP3|8838|WNT1 inducible signaling pathway protein 3##BC035250|WISP3|8838|WNT1 inducible signaling pathway protein 3##NM_198239|WISP3|8838|WNT1 inducible signaling pathway protein 3##BC105940|WISP3|8838|WNT1 inducible signaling pathway protein 3##BC105941|WISP3|8838|WNT1 inducible signaling pathway protein 3##AY358349|WISP3|8838|WNT1 inducible signaling pathway protein 3##AF100781|WISP3|8838|WNT1 inducible signaling pathway protein 3##AY358350|WISP3|8838|WNT1 inducible signaling pathway protein 3##AB075040|WISP3|8838|WNT1 inducible signaling pathway protein 3##AF201334|TUBE1|51175|tubulin, epsilon 1##DQ891503|TUBE1|51175|tubulin, epsilon 1##DQ894695|TUBE1|51175|tubulin, epsilon 1##BC025405|TUBE1|51175|tubulin, epsilon 1##BC031101|TUBE1|51175|tubulin, epsilon 1##AK026242|TUBE1|51175|tubulin, epsilon 1##NM_016262|TUBE1|51175|tubulin, epsilon 1##NM_001033564|C6orf225|619208|chromosome 6 open reading frame 225##BC044912|C6orf225|619208|chromosome 6 open reading frame 225##AL049461|C6orf225|619208|chromosome 6 open reading frame 225	0.0	
chr2	87303872	87304017	reg1000828.p2	6.348	+	TSC_hg19_v1_chr2_-_87303546 BC132791 BC132793 BC030543 BC011756 BC013972 BC033072	-612	-	BC107767 BC109248 BC070296 BC005379 NM_001032392 M93143 NM_002665 BC022294	-54986	-	CR749330 NM_001024457	-159207	+	TSC_hg19_v1_chr2_+_87755000 BC009508 BC073906	451073	+	TSC_hg19_v1_chr2_+_87755060 AK312010	451116	+	BC022294 M93143 NM_002665 BC005379 NM_001032392 BC070296 BC109248 BC107767	743675	+	BC132791|LOC285074|285074|anaphase promoting complex subunit 1 pseudogene##BC132793|LOC285074|285074|anaphase promoting complex subunit 1 pseudogene##BC107767|PLGLB1|5343|plasminogen-like B1##BC109248|PLGLB1|5343|plasminogen-like B1##BC070296|PLGLB1|5343|plasminogen-like B1##BC005379|PLGLB2|5342|plasminogen-like B2##NM_001032392|PLGLB1|5343|plasminogen-like B1##M93143|PLGLB2|5342|plasminogen-like B2##NM_002665|PLGLB2|5342|plasminogen-like B2##BC022294|PLGLB2|5342|plasminogen-like B2##CR749330|RGPD1|400966|RANBP2-like and GRIP domain containing 1##NM_001024457|RGPD1|400966|RANBP2-like and GRIP domain containing 1##BC009508|LINC00152|112597|long intergenic non-protein coding RNA 152##BC073906|LINC00152|112597|long intergenic non-protein coding RNA 152##AK312010|LINC00152|112597|long intergenic non-protein coding RNA 152##BC022294|PLGLB2|5342|plasminogen-like B2##M93143|PLGLB2|5342|plasminogen-like B2##NM_002665|PLGLB2|5342|plasminogen-like B2##BC005379|PLGLB2|5342|plasminogen-like B2##NM_001032392|PLGLB1|5343|plasminogen-like B1##BC070296|PLGLB1|5343|plasminogen-like B1##BC109248|PLGLB1|5343|plasminogen-like B1##BC107767|PLGLB1|5343|plasminogen-like B1	1.02236	denovo_WM_21:2:0.218	denovo_WM_21:-54:0.792
chr19	36087368	36087522	reg1000769.p1	6.347	+	AK058032 AK223259 NM_000704	-32886	-	TSC_hg19_v1_chr19_-_36036923 CR627053	-50537	-	TSC_hg19_v1_chr19_+_36036553 NM_001242597 NM_001242598 NM_032635 Y18007 BC001118 CU674562	-50901	+	TSC_hg19_v1_chr19_+_36103655 BC064390 NM_015302 BC171905 BC157882 AK307703 AB020648 BC013947	16226	+	TSC_hg19_v1_chr19_+_36119937 BC031682	32497	+	TSC_hg19_v1_chr19_+_36119959 BC002868 BC004204 NM_024321 AK301669 AB384666 CU678262	32561	+	AK058032|ATP4A|495|ATPase, H+/K+ exchanging, alpha polypeptide##AK223259|ATP4A|495|ATPase, H+/K+ exchanging, alpha polypeptide##NM_000704|ATP4A|495|ATPase, H+/K+ exchanging, alpha polypeptide##CR627053|LOC100506469|100506469|uncharacterized LOC100506469##NM_001242597|TMEM147|10430|transmembrane protein 147##NM_001242598|TMEM147|10430|transmembrane protein 147##NM_032635|TMEM147|10430|transmembrane protein 147##Y18007|TMEM147|10430|transmembrane protein 147##BC001118|TMEM147|10430|transmembrane protein 147##BC064390|HAUS5|23354|HAUS augmin-like complex, subunit 5##NM_015302|HAUS5|23354|HAUS augmin-like complex, subunit 5##BC171905|HAUS5|23354|HAUS augmin-like complex, subunit 5##BC157882|HAUS5|23354|HAUS augmin-like complex, subunit 5##AK307703|HAUS5|23354|HAUS augmin-like complex, subunit 5##AB020648|HAUS5|23354|HAUS augmin-like complex, subunit 5##BC013947|HAUS5|23354|HAUS augmin-like complex, subunit 5##BC031682|RBM42|79171|RNA binding motif protein 42##BC002868|RBM42|79171|RNA binding motif protein 42##BC004204|RBM42|79171|RNA binding motif protein 42##NM_024321|RBM42|79171|RNA binding motif protein 42##AK301669|RBM42|79171|RNA binding motif protein 42	1.531137	denovo_WM_21:0:0.989	denovo_WM_21:45:0.488
chr10	134148791	134148964	reg1000381.p1	6.337	+	TSC_hg19_v1_chr10_+_134145696 AK098652 BC050097 AK295953 AB051461 BC029902 NM_001143757 AK097418	-3167	+	TSC_hg19_v1_chr10_+_134145617 NM_001143758 NM_001143759 NM_030626	-3263	+	TSC_hg19_v1_chr10_-_134145360 AK098366 AK308956 BC042566	-3531	-	TSC_hg19_v1_chr10_+_134210703 NM_001098637 NM_138499 BC068574	61832	+	TSC_hg19_v1_chr10_+_134258657 BC030794 NM_173541	109806	+	TSC_hg19_v1_chr10_+_134351305 BC096280 BC096281 BC117515 AF273055 NM_005539	202435	+	AK098652|LRRC27|80313|leucine rich repeat containing 27##BC050097|LRRC27|80313|leucine rich repeat containing 27##AK295953|LRRC27|80313|leucine rich repeat containing 27##AB051461|LRRC27|80313|leucine rich repeat containing 27##BC029902|LRRC27|80313|leucine rich repeat containing 27##NM_001143757|LRRC27|80313|leucine rich repeat containing 27##AK097418|LRRC27|80313|leucine rich repeat containing 27##NM_001143758|LRRC27|80313|leucine rich repeat containing 27##NM_001143759|LRRC27|80313|leucine rich repeat containing 27##NM_030626|LRRC27|80313|leucine rich repeat containing 27##AK098366|STK32C|282974|serine/threonine kinase 32C##AK308956|STK32C|282974|serine/threonine kinase 32C##NM_001098637|PWWP2B|170394|PWWP domain containing 2B##NM_138499|PWWP2B|170394|PWWP domain containing 2B##BC068574|PWWP2B|170394|PWWP domain containing 2B##BC030794|C10orf91|170393|chromosome 10 open reading frame 91##NM_173541|C10orf91|170393|chromosome 10 open reading frame 91##BC096280|INPP5A|3632|inositol polyphosphate-5-phosphatase, 40kDa##BC096281|INPP5A|3632|inositol polyphosphate-5-phosphatase, 40kDa##BC117515|INPP5A|3632|inositol polyphosphate-5-phosphatase, 40kDa##AF273055|INPP5A|3632|inositol polyphosphate-5-phosphatase, 40kDa##NM_005539|INPP5A|3632|inositol polyphosphate-5-phosphatase, 40kDa	1.595422	denovo_WM_21:36:0.781	denovo_WM_21:-59:0.781
chr5	171542225	171542354	reg1000780.p2	6.337	+	BC026213 NM_012300 NM_033644 NM_033645	-108413	-	AB033279 TSC_hg19_v1_chr5_-_171433643 AB033281 AB033280	-108645	-	TSC_hg19_v1_chr5_-_171433553 AK314999 DQ891125 DQ894304 AF176022 AB014596	-108761	-	AB015718 TSC_hg19_v1_chr5_-_171615170	72849	-	AK307943 TSC_hg19_v1_chr5_-_171615203	72914	-	TSC_hg19_v1_chr5_-_171615241 BC070077 AK313350	72984	-	BC026213|FBXW11|23291|F-box and WD repeat domain containing 11##NM_012300|FBXW11|23291|F-box and WD repeat domain containing 11##NM_033644|FBXW11|23291|F-box and WD repeat domain containing 11##NM_033645|FBXW11|23291|F-box and WD repeat domain containing 11##AB033279|FBXW11|23291|F-box and WD repeat domain containing 11##AB033281|FBXW11|23291|F-box and WD repeat domain containing 11##AB033280|FBXW11|23291|F-box and WD repeat domain containing 11##AK314999|FBXW11|23291|F-box and WD repeat domain containing 11##DQ891125|FBXW11|23291|F-box and WD repeat domain containing 11##DQ894304|FBXW11|23291|F-box and WD repeat domain containing 11##AF176022|FBXW11|23291|F-box and WD repeat domain containing 11##AB014596|FBXW11|23291|F-box and WD repeat domain containing 11##AB015718|STK10|6793|serine/threonine kinase 10##AK307943|STK10|6793|serine/threonine kinase 10##BC070077|STK10|6793|serine/threonine kinase 10##AK313350|STK10|6793|serine/threonine kinase 10	0.838065	denovo_WM_21:-50:0.699
chr13	95253928	95254063	reg1000770.p2	6.328	+	AJ006068 TSC_hg19_v1_chr13_-_95248497 AK303439 BC005284 NM_014305	-5499	-	TSC_hg19_v1_chr13_-_95248407 AY544125 AF048686 AK313251 BC033675	-5566	-	AK293115 BC028311 DQ902581 S69231 BC104476 L18967 AJ000503 D17547 NM_001129889 NM_001922	-122169	-	TSC_hg19_v1_chr13_+_95254110 NM_180989 BC033906 BC052243 AK126794	107	+	X65666 X71136 AB464716 NM_007084	110323	-	AF541977 AY207008 AY081219 AY133678 AY133679 AY133680 TSC_hg19_v1_chr13_-_95953688 AK298953 BC041560 AF071202 AK296247 NM_001105515 NM_005845 AK290317	699717	-	AJ006068|TGDS|23483|TDP-glucose 4,6-dehydratase##AK303439|TGDS|23483|TDP-glucose 4,6-dehydratase##BC005284|TGDS|23483|TDP-glucose 4,6-dehydratase##NM_014305|TGDS|23483|TDP-glucose 4,6-dehydratase##AY544125|TGDS|23483|TDP-glucose 4,6-dehydratase##AF048686|TGDS|23483|TDP-glucose 4,6-dehydratase##AK313251|TGDS|23483|TDP-glucose 4,6-dehydratase##BC033675|TGDS|23483|TDP-glucose 4,6-dehydratase##AK293115|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##BC028311|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##DQ902581|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##S69231|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##L18967|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##AJ000503|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##D17547|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##NM_001129889|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##NM_001922|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##NM_180989|GPR180|160897|G protein-coupled receptor 180##BC033906|GPR180|160897|G protein-coupled receptor 180##BC052243|GPR180|160897|G protein-coupled receptor 180##AK126794|GPR180|160897|G protein-coupled receptor 180##X65666|SOX21|11166|SRY (sex determining region Y)-box 21##X71136|SOX21|11166|SRY (sex determining region Y)-box 21##NM_007084|SOX21|11166|SRY (sex determining region Y)-box 21##AF541977|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY207008|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY081219|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY133678|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY133679|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY133680|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AK298953|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##BC041560|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AF071202|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AK296247|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##NM_001105515|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##NM_005845|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AK290317|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4	0.036815	
chr19	18654392	18654495	reg1000554.p1	6.328	+	TSC_hg19_v1_chr19_-_18654384 BX538124 BX647405 GQ372970 NM_012181	-61	-	TSC_hg19_v1_chr19_-_18654341 AY278607 AK313363 BX647720	-120	-	TSC_hg19_v1_chr19_-_18653874 AK300571	-666	-	NM_001171948 NM_001171949 NM_024069 TSC_hg19_v1_chr19_+_18668584 AK125365 AK098346 BC001080 BC006479	14167	+	TSC_hg19_v1_chr19_+_18668679 AF173381	14231	+	NM_001033930 NM_003333 TSC_hg19_v1_chr19_+_18682666 AF348700 BC101830 BC101832 BC143668 D28425 AK314717	28214	+	BX538124|FKBP8|23770|FK506 binding protein 8, 38kDa##BX647405|FKBP8|23770|FK506 binding protein 8, 38kDa##GQ372970|FKBP8|23770|FK506 binding protein 8, 38kDa##NM_012181|FKBP8|23770|FK506 binding protein 8, 38kDa##AY278607|FKBP8|23770|FK506 binding protein 8, 38kDa##AK313363|FKBP8|23770|FK506 binding protein 8, 38kDa##BX647720|FKBP8|23770|FK506 binding protein 8, 38kDa##AK300571|FKBP8|23770|FK506 binding protein 8, 38kDa##NM_001171948|KXD1|79036|KxDL motif containing 1##NM_001171949|KXD1|79036|KxDL motif containing 1##NM_024069|KXD1|79036|KxDL motif containing 1##AK125365|KXD1|79036|KxDL motif containing 1##AK098346|KXD1|79036|KxDL motif containing 1##BC001080|KXD1|79036|KxDL motif containing 1##BC006479|KXD1|79036|KxDL motif containing 1##AF173381|KXD1|79036|KxDL motif containing 1##NM_001033930|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##NM_003333|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##AF348700|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##BC101830|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##BC101832|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##BC143668|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##AK314717|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1	0.752635	denovo_WM_21:-33:0.720
chr3	114866525	114866710	reg1000144.p2	6.310	+	TSC_hg19_v1_chr3_-_114866114 BC010934 BX647778 BX648237 NM_015642	-503	-	BC090936 NM_001164343	-76377	-	AK225788 NM_001164344 NM_001164345	-388497	-	NM_001130064 NM_002045	475533	+	TSC_hg19_v1_chr3_+_115342501 AK289699 M25667 AK313658 BX648458 AK290100 BC007936 AM392759 AM393509 DQ893244 DQ896574 AB463057 BT019771 BT019810	475802	+	AK315286 TSC_hg19_v1_chr3_-_116164338	1297714	-	BC010934|ZBTB20|26137|zinc finger and BTB domain containing 20##BX647778|ZBTB20|26137|zinc finger and BTB domain containing 20##BX648237|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_015642|ZBTB20|26137|zinc finger and BTB domain containing 20##BC090936|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164343|ZBTB20|26137|zinc finger and BTB domain containing 20##AK225788|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164344|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164345|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001130064|GAP43|2596|growth associated protein 43##NM_002045|GAP43|2596|growth associated protein 43##AK289699|GAP43|2596|growth associated protein 43##M25667|GAP43|2596|growth associated protein 43##AK313658|GAP43|2596|growth associated protein 43##BX648458|GAP43|2596|growth associated protein 43##AK290100|GAP43|2596|growth associated protein 43##BC007936|GAP43|2596|growth associated protein 43##AM392759|GAP43|2596|growth associated protein 43##AM393509|GAP43|2596|growth associated protein 43##DQ893244|GAP43|2596|growth associated protein 43##DQ896574|GAP43|2596|growth associated protein 43##BT019771|GAP43|2596|growth associated protein 43##BT019810|GAP43|2596|growth associated protein 43##AK315286|LSAMP|4045|limbic system-associated membrane protein	0.136033	
chr11	64490680	64490790	reg1000601.p1	6.304	+	TSC_hg19_v1_chr11_-_64490666 AB023138 BC150275 NM_015080 NM_138732	-70	-	TSC_hg19_v1_chr11_-_64410785 NM_138734	-79944	-	BC043422 TSC_hg19_v1_chr11_-_64377473	-113333	-	HQ258466 AB590919 TSC_hg19_v1_chr11_-_64510439	19661	-	TSC_hg19_v1_chr11_-_64510461 AK314637	19733	-	TSC_hg19_v1_chr11_-_64511625 AF081194 U78170 AK122694 NM_001098671	20858	-	AB023138|NRXN2|9379|neurexin 2##BC150275|NRXN2|9379|neurexin 2##NM_015080|NRXN2|9379|neurexin 2##NM_138732|NRXN2|9379|neurexin 2##NM_138734|NRXN2|9379|neurexin 2##HQ258466|RASGRP2|10235|RAS guanyl releasing protein 2 (calcium and DAG-regulated)##AK314637|RASGRP2|10235|RAS guanyl releasing protein 2 (calcium and DAG-regulated)##AF081194|RASGRP2|10235|RAS guanyl releasing protein 2 (calcium and DAG-regulated)##U78170|RASGRP2|10235|RAS guanyl releasing protein 2 (calcium and DAG-regulated)##AK122694|RASGRP2|10235|RAS guanyl releasing protein 2 (calcium and DAG-regulated)##NM_001098671|RASGRP2|10235|RAS guanyl releasing protein 2 (calcium and DAG-regulated)	0.200753	
chr12	125534182	125534325	reg1000696.p1	6.302	+	TSC_hg19_v1_chr12_+_125478249 AF284094	-55993	+	TSC_hg19_v1_chr12_+_125478217 NM_080626 BC034525	-56063	+	TSC_hg19_v1_chr12_-_125473644 BC037964 NM_032656	-60609	-	BC040490 NM_023928 BC041000 TSC_hg19_v1_chr12_+_125549942	15688	+	TSC_hg19_v1_chr12_+_125549988 AK308779 AK024036 AK022451 AK304176 BC051862 AB054121 AY091468	15815	+	NM_052907	276908	+	AF284094|BRI3BP|140707|BRI3 binding protein##NM_080626|BRI3BP|140707|BRI3 binding protein##BC034525|BRI3BP|140707|BRI3 binding protein##BC037964|DHX37|57647|DEAH (Asp-Glu-Ala-His) box polypeptide 37##NM_032656|DHX37|57647|DEAH (Asp-Glu-Ala-His) box polypeptide 37##BC040490|AACS|65985|acetoacetyl-CoA synthetase##NM_023928|AACS|65985|acetoacetyl-CoA synthetase##BC041000|AACS|65985|acetoacetyl-CoA synthetase##AK308779|AACS|65985|acetoacetyl-CoA synthetase##AK024036|AACS|65985|acetoacetyl-CoA synthetase##AK022451|AACS|65985|acetoacetyl-CoA synthetase##AK304176|AACS|65985|acetoacetyl-CoA synthetase##BC051862|AACS|65985|acetoacetyl-CoA synthetase##AB054121|AACS|65985|acetoacetyl-CoA synthetase##AY091468|AACS|65985|acetoacetyl-CoA synthetase##NM_052907|TMEM132B|114795|transmembrane protein 132B	1.433655	denovo_WM_21:13:0.352	denovo_WM_21:85:0.966
chr15	49103439	49103567	reg1000362.p2	6.300	+	BC117182 TSC_hg19_v1_chr15_-_49103277 AB020719 BC069186 AK303805 BX648822 BC107721 NM_001194998 NM_014985	-241	-	TSC_hg19_v1_chr15_-_48937907 BC146854 AK304737 BC094721 NM_000138 X63556	-165574	-	TSC_hg19_v1_chr15_-_48937070 L13923	-166420	-	TSC_hg19_v1_chr15_+_49170330 NM_014335 BC114944 BC114946 AK315365 AF092135 AF109873 AF349444 AK098383 AL109701 BC024151 AL357456 BC007944 AB527924 AF274951	66869	+	BC033907 NM_203349	152137	-	CU689588 AB385300 TSC_hg19_v1_chr15_-_49338644 D87445 AK307480 AK308183 BC008635 BC033001 NM_001193489 NM_014701	235133	-	BC117182|CEP152|22995|centrosomal protein 152kDa##AB020719|CEP152|22995|centrosomal protein 152kDa##BC069186|CEP152|22995|centrosomal protein 152kDa##AK303805|CEP152|22995|centrosomal protein 152kDa##BX648822|CEP152|22995|centrosomal protein 152kDa##BC107721|CEP152|22995|centrosomal protein 152kDa##NM_001194998|CEP152|22995|centrosomal protein 152kDa##NM_014985|CEP152|22995|centrosomal protein 152kDa##BC146854|FBN1|2200|fibrillin 1##AK304737|FBN1|2200|fibrillin 1##BC094721|FBN1|2200|fibrillin 1##NM_000138|FBN1|2200|fibrillin 1##X63556|FBN1|2200|fibrillin 1##L13923|FBN1|2200|fibrillin 1##NM_014335|EID1|23741|EP300 interacting inhibitor of differentiation 1##BC114944|EID1|23741|EP300 interacting inhibitor of differentiation 1##BC114946|EID1|23741|EP300 interacting inhibitor of differentiation 1##AK315365|EID1|23741|EP300 interacting inhibitor of differentiation 1##AF092135|EID1|23741|EP300 interacting inhibitor of differentiation 1##AF109873|EID1|23741|EP300 interacting inhibitor of differentiation 1##AF349444|EID1|23741|EP300 interacting inhibitor of differentiation 1##AK098383|EID1|23741|EP300 interacting inhibitor of differentiation 1##AL109701|EID1|23741|EP300 interacting inhibitor of differentiation 1##BC024151|EID1|23741|EP300 interacting inhibitor of differentiation 1##AL357456|EID1|23741|EP300 interacting inhibitor of differentiation 1##BC007944|EID1|23741|EP300 interacting inhibitor of differentiation 1##BC033907|SHC4|399694|SHC (Src homology 2 domain containing) family, member 4##NM_203349|SHC4|399694|SHC (Src homology 2 domain containing) family, member 4##D87445|SECISBP2L|9728|SECIS binding protein 2-like##AK307480|SECISBP2L|9728|SECIS binding protein 2-like##AK308183|SECISBP2L|9728|SECIS binding protein 2-like##BC008635|SECISBP2L|9728|SECIS binding protein 2-like##BC033001|SECISBP2L|9728|SECIS binding protein 2-like##NM_001193489|SECISBP2L|9728|SECIS binding protein 2-like##NM_014701|SECISBP2L|9728|SECIS binding protein 2-like	0.129256	
chr14	75530732	75530861	reg1000731.p2	6.298	+	TSC_hg19_v1_chr14_-_75530719 BC035568 NM_001107 NM_203488 AK312101	-62	-	AF195657 BC012544 TSC_hg19_v1_chr14_-_75518171 NM_001040108 NM_014381	-12613	-	NM_014239 TSC_hg19_v1_chr14_+_75469623 BX161473 BC000494 BC003165 AF035280 BC011750 CU680040 DQ891364 DQ894544 L40395	-61135	+	NM_001042430 NM_024643 AK223359 AK303882 TSC_hg19_v1_chr14_+_75536343 AK026746 BC004259	5547	+	AY048580 AB463142 AY080896 TSC_hg19_v1_chr14_-_75593718 BC093881 BC112101	62874	-	TSC_hg19_v1_chr14_-_75593752 AB082526 AK128693 NM_033116	62956	-	BC035568|ACYP1|97|acylphosphatase 1, erythrocyte (common) type##NM_001107|ACYP1|97|acylphosphatase 1, erythrocyte (common) type##NM_203488|ACYP1|97|acylphosphatase 1, erythrocyte (common) type##AK312101|ACYP1|97|acylphosphatase 1, erythrocyte (common) type##AF195657|MLH3|27030|mutL homolog 3 (E. coli)##BC012544|MLH3|27030|mutL homolog 3 (E. coli)##NM_001040108|MLH3|27030|mutL homolog 3 (E. coli)##NM_014381|MLH3|27030|mutL homolog 3 (E. coli)##NM_014239|EIF2B2|8892|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa##BX161473|EIF2B2|8892|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa##BC000494|EIF2B2|8892|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa##BC003165|EIF2B2|8892|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa##AF035280|EIF2B2|8892|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa##BC011750|EIF2B2|8892|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa##DQ891364|EIF2B2|8892|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa##DQ894544|EIF2B2|8892|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa##L40395|EIF2B2|8892|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa##NM_001042430|FAM164C|79696|family with sequence similarity 164, member C##NM_024643|FAM164C|79696|family with sequence similarity 164, member C##AK223359|FAM164C|79696|family with sequence similarity 164, member C##AK303882|FAM164C|79696|family with sequence similarity 164, member C##AK026746|FAM164C|79696|family with sequence similarity 164, member C##BC004259|FAM164C|79696|family with sequence similarity 164, member C##AY048580|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9##AY080896|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9##BC093881|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9##BC112101|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9##AB082526|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9##AK128693|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9##NM_033116|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9	0.980873	denovo_WM_21:7:0.981
chr10	119941165	119941264	reg1000628.p2	6.296	+	BC036393 TSC_hg19_v1_chr10_+_119806514 AJ535622 AK055184 BC112326 BC112326 AY226450 AY226451 AY226451 AJ344228 AJ344228 AJ535620 AJ535620 AJ535621	-134784	+	DQ013303 BC075073 BC075074 TSC_hg19_v1_chr10_-_119806407 AB023158 AY037299 NM_014904	-135170	-	TSC_hg19_v1_chr10_+_119302713 AB463605	-638471	+	TSC_hg19_v1_chr10_-_120101833 AK023250 BC023577 AK026630 NM_001134672 NM_022063	160610	-	AK313269 AK290461 NM_004248	413944	-	CU691560 TSC_hg19_v1_chr10_-_120514298	573073	-	BC036393|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535622|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AK055184|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226450|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535621|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##DQ013303|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075073|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075074|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AB023158|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AY037299|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##NM_014904|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AK023250|FAM204A|63877|family with sequence similarity 204, member A##BC023577|FAM204A|63877|family with sequence similarity 204, member A##AK026630|FAM204A|63877|family with sequence similarity 204, member A##NM_001134672|FAM204A|63877|family with sequence similarity 204, member A##NM_022063|FAM204A|63877|family with sequence similarity 204, member A##AK313269|PRLHR|2834|prolactin releasing hormone receptor##AK290461|PRLHR|2834|prolactin releasing hormone receptor##NM_004248|PRLHR|2834|prolactin releasing hormone receptor	0.0	
chr17	57232942	57233095	reg1000119.p2	6.296	+	NM_018304	-159	+	NM_001100595 NM_182620	-219	-	BC106003 AK022820 TSC_hg19_v1_chr17_-_57232539 AK056473 FJ648812 BC017873	-472	-	AK225380 TSC_hg19_v1_chr17_+_57233106 AK001891 AK225377 FJ161961 BC008669	102	+	AF349467 NM_018149 TSC_hg19_v1_chr17_+_57287384 AL834490 AK026858 BC031604	54379	+	NM_001165993 NM_001165994 NM_182569 AK094770 AY271346 BC034432 EU192951	64880	+	NM_018304|PRR11|55771|proline rich 11##NM_001100595|SKA2|348235|spindle and kinetochore associated complex subunit 2##NM_182620|SKA2|348235|spindle and kinetochore associated complex subunit 2##BC106003|SKA2|348235|spindle and kinetochore associated complex subunit 2##AK022820|SKA2|348235|spindle and kinetochore associated complex subunit 2##AK056473|SKA2|348235|spindle and kinetochore associated complex subunit 2##FJ648812|SKA2|348235|spindle and kinetochore associated complex subunit 2##BC017873|SKA2|348235|spindle and kinetochore associated complex subunit 2##AK225380|PRR11|55771|proline rich 11##AK001891|PRR11|55771|proline rich 11##AK225377|PRR11|55771|proline rich 11##FJ161961|PRR11|55771|proline rich 11##BC008669|PRR11|55771|proline rich 11##AF349467|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_018149|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##AL834490|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK026858|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##BC031604|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_001165993|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##NM_001165994|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##NM_182569|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##AK094770|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##AY271346|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##BC034432|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##EU192951|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1	2.324031	denovo_WM_21:-13:0.945	denovo_WM_21:-43:0.994	denovo_WM_21:50:0.386
chr4	156680030	156680155	reg1000655.p1	6.293	+	TSC_hg19_v1_chr4_+_156588813 NM_001130684 BC028384	-91275	+	NM_000856 NM_001130682 NM_001130686 NM_001130687 X66534 Y15723 AK312952 BC095395 TSC_hg19_v1_chr4_+_156587999 AK309950 AK096588 NM_001130683 NM_001130685 BX649180 AK226125 BX647200 BC012627	-91917	+	TSC_hg19_v1_chr4_-_156298108 AK024812 AY690636 NM_001039580	-381981	-	NM_000857 TSC_hg19_v1_chr4_+_156680190 AK315944 AK300296 AK315199 AK296680 AK307838 BC026332 BC060835 BC047620 X66533 AF020340	112	+	TSC_hg19_v1_chr4_+_156680603 AK299916	514	+	AB528059 AJ252011 NM_017419	107308	-	NM_001130684|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BC028384|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_000856|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130682|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130686|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130687|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##X66534|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##Y15723|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##AK312952|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BC095395|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##AK309950|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##AK096588|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130683|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130685|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BX649180|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##AK226125|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BX647200|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BC012627|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##AK024812|MAP9|79884|microtubule-associated protein 9##AY690636|MAP9|79884|microtubule-associated protein 9##NM_001039580|MAP9|79884|microtubule-associated protein 9##NM_000857|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK315944|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK300296|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK315199|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK296680|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK307838|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##BC026332|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##BC060835|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##BC047620|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##X66533|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AF020340|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK299916|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AJ252011|ACCN5|51802|amiloride-sensitive cation channel 5, intestinal##NM_017419|ACCN5|51802|amiloride-sensitive cation channel 5, intestinal	1.229671	denovo_WM_21:-19:0.925	denovo_WM_21:32:0.305
chr7	137686849	137686965	reg1000189.p1	6.293	+	TSC_hg19_v1_chr7_-_137686833 NM_001253775 NM_194071	-55	-	AK131517 TSC_hg19_v1_chr7_-_137686812	-95	-	AK293048 BC110813 TSC_hg19_v1_chr7_-_137686800 BC063666 AJ549092 AJ549387	-113	-	AK298421 NM_001190906 NM_001190907 NM_005989 Z28339 AK298428 BC130625 BC130627 AK289425 HQ258384	74311	+	TSC_hg19_v1_chr7_+_138145003 AK312610 AK075306 NM_003852 NM_015905 AK302679	458085	+	AF119042 BC028689 TSC_hg19_v1_chr7_+_138145183 AB528587 AF009353	458329	+	NM_001253775|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##NM_194071|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AK131517|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AK293048|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##BC110813|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##BC063666|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AJ549092|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AJ549387|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AK298421|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##NM_001190906|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##NM_001190907|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##NM_005989|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##Z28339|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##AK298428|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##BC130625|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##BC130627|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##AK289425|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##HQ258384|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##AK312610|TRIM24|8805|tripartite motif containing 24##AK075306|TRIM24|8805|tripartite motif containing 24##NM_003852|TRIM24|8805|tripartite motif containing 24##NM_015905|TRIM24|8805|tripartite motif containing 24##AK302679|TRIM24|8805|tripartite motif containing 24##AF119042|TRIM24|8805|tripartite motif containing 24##BC028689|TRIM24|8805|tripartite motif containing 24##AF009353|TRIM24|8805|tripartite motif containing 24	0.392808	denovo_WM_21:2:0.346
chr20	60813434	60813546	reg1000345.p2	6.284	+	TSC_hg19_v1_chr20_-_60795335 AF140538 NM_007232	-18165	-	TSC_hg19_v1_chr20_+_60758094 NM_015666 AK316027 AK316325 AK299147 AK299189 AK299726	-55411	+	TSC_hg19_v1_chr20_+_60718830 AK125656 AK291485 AK299881 NM_198935 BC034494 BX640848 AK308765 BC068993 AB014593 DQ890908 EU176499 AB383958	-94729	+	AK291851 TSC_hg19_v1_chr20_+_60813576	86	+	TSC_hg19_v1_chr20_+_60813579 AF392447 AK000230 AK296595 AK315576 NM_014835 NM_144498	90	+	TSC_hg19_v1_chr20_+_60813616 AB018315 AY028168 BC000296 BC004455 BC018812	131	+	AF140538|HRH3|11255|histamine receptor H3##NM_007232|HRH3|11255|histamine receptor H3##NM_015666|GTPBP5|26164|GTP binding protein 5 (putative)##AK316027|GTPBP5|26164|GTP binding protein 5 (putative)##AK316325|GTPBP5|26164|GTP binding protein 5 (putative)##AK299147|GTPBP5|26164|GTP binding protein 5 (putative)##AK299189|GTPBP5|26164|GTP binding protein 5 (putative)##AK299726|GTPBP5|26164|GTP binding protein 5 (putative)##AK125656|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##AK291485|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##AK299881|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##NM_198935|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##BC034494|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##BX640848|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##AK308765|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##BC068993|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##AB014593|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##DQ890908|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##EU176499|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##AK291851|OSBPL2|9885|oxysterol binding protein-like 2##AF392447|OSBPL2|9885|oxysterol binding protein-like 2##AK000230|OSBPL2|9885|oxysterol binding protein-like 2##AK296595|OSBPL2|9885|oxysterol binding protein-like 2##AK315576|OSBPL2|9885|oxysterol binding protein-like 2##NM_014835|OSBPL2|9885|oxysterol binding protein-like 2##NM_144498|OSBPL2|9885|oxysterol binding protein-like 2##AB018315|OSBPL2|9885|oxysterol binding protein-like 2##AY028168|OSBPL2|9885|oxysterol binding protein-like 2##BC000296|OSBPL2|9885|oxysterol binding protein-like 2##BC004455|OSBPL2|9885|oxysterol binding protein-like 2##BC018812|OSBPL2|9885|oxysterol binding protein-like 2	0.051118	
chr13	52586401	52586531	reg1000821.p2	6.282	+	DQ015922 U03464 BC143974 BC143973 BC117200 BC143975 BC143976 NM_000053 NM_001005918 NM_001243182 U11700	-916	-	AK098719 NM_031290 AK225745 AL136887 BC069691 BC069748 BC069770 BC069806	-150272	+	BC026024 BC009825 NM_001031719 TSC_hg19_v1_chr13_-_52378300 AK023701 NM_024705	-208191	-	TSC_hg19_v1_chr13_+_52586546 NM_001004127 BC142998 AK296747 AK092428 AX747540 BC108677 BC111022 AK025456 BC143059 BC150316	69	+	BC073862 D87455 NM_021645	12286	+	BC063885 NM_199289	116747	-	DQ015922|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##U03464|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC143974|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC143973|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC117200|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC143975|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC143976|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##NM_000053|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##NM_001005918|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##NM_001243182|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##U11700|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##AK098719|CCDC70|83446|coiled-coil domain containing 70##NM_031290|CCDC70|83446|coiled-coil domain containing 70##AK225745|CCDC70|83446|coiled-coil domain containing 70##AL136887|CCDC70|83446|coiled-coil domain containing 70##BC069691|CCDC70|83446|coiled-coil domain containing 70##BC069748|CCDC70|83446|coiled-coil domain containing 70##BC069770|CCDC70|83446|coiled-coil domain containing 70##BC069806|CCDC70|83446|coiled-coil domain containing 70##BC026024|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##BC009825|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##NM_001031719|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##AK023701|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##NM_024705|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##NM_001004127|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##BC142998|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##AK296747|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##BC108677|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##BC111022|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##AK025456|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##BC143059|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##BC150316|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##BC073862|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##D87455|UTP14C|9724|UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)##NM_021645|UTP14C|9724|UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)##BC063885|NEK5|341676|NIMA (never in mitosis gene a)-related kinase 5##NM_199289|NEK5|341676|NIMA (never in mitosis gene a)-related kinase 5	1.330268	denovo_WM_21:-20:0.244	denovo_WM_21:40:0.769	denovo_WM_21:-59:0.317
chr12	123459609	123459751	reg1000359.p2	6.280	+	BC009181 BC071172 BC015605 BC047676 AK095481 AK023553 NM_024623 BC033857	-374	+	AF216494 AK304295 TSC_hg19_v1_chr12_-_123451051 NM_001243013 NM_001243014 NM_019624 NM_019625 NM_203444	-8633	-	TSC_hg19_v1_chr12_-_123450999 AK027624 AB177852 AB112582 AB112583	-8702	-	TSC_hg19_v1_chr12_-_123459740 BC064384	25	-	TSC_hg19_v1_chr12_+_123459790 AK094820 BX640675 AK303095 BX640734 AK074098	124	+	BC094839 NM_001002251 NM_001002252 NM_016638 NM_018694	5195	+	BC009181|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BC071172|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BC015605|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BC047676|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##AK095481|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##AK023553|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##NM_024623|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BC033857|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##AF216494|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AK304295|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_001243013|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_001243014|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_019624|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_019625|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_203444|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AK027624|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AB177852|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AB112582|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AB112583|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##BC064384|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AK094820|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BX640675|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##AK303095|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BX640734|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BC094839|ARL6IP4|51329|ADP-ribosylation-like factor 6 interacting protein 4##NM_001002251|ARL6IP4|51329|ADP-ribosylation-like factor 6 interacting protein 4##NM_001002252|ARL6IP4|51329|ADP-ribosylation-like factor 6 interacting protein 4##NM_016638|ARL6IP4|51329|ADP-ribosylation-like factor 6 interacting protein 4##NM_018694|ARL6IP4|51329|ADP-ribosylation-like factor 6 interacting protein 4	0.0	
chr5	118406546	118406675	reg1000779.p1	6.277	+	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	-82372	-	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	-2496096	-	TSC_hg19_v1_chr5_+_115898220 D28352	-2508386	+	TSC_hg19_v1_chr5_+_118406803 AB593142 BC028004	201	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	555	+	NM_001077654 TSC_hg19_v1_chr5_+_118604492 AK097884 AK001931	197848	+	BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2##AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##AB593142|DMXL1|1657|Dmx-like 1##BC028004|DMXL1|1657|Dmx-like 1##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1##NM_001077654|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK097884|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK001931|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8	0.014467	
chr6	107077354	107077471	reg1000661.p2	6.273	+	BC006399 AK313962 TSC_hg19_v1_chr6_-_107077358 NM_032730	-132	-	TSC_hg19_v1_chr6_+_106960443 U83115	-117001	+	AK056705 NM_001624	-117683	+	NM_018292 TSC_hg19_v1_chr6_+_107077455 AK225262 AL136679 AK225443 AK314694 BC014389 AK001851 BC006084 AK022251 AK023509 CU675233	85	+	TSC_hg19_v1_chr6_+_107349444 NM_001142468 NM_001142470 NM_016487 AF151064 AK091564	272060	+	BC131628 NM_001080450	358223	-	BC006399|RTN4IP1|84816|reticulon 4 interacting protein 1##AK313962|RTN4IP1|84816|reticulon 4 interacting protein 1##NM_032730|RTN4IP1|84816|reticulon 4 interacting protein 1##U83115|AIM1|202|absent in melanoma 1##AK056705|AIM1|202|absent in melanoma 1##NM_001624|AIM1|202|absent in melanoma 1##NM_018292|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK225262|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AL136679|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK225443|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK314694|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##BC014389|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK001851|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##BC006084|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK022251|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK023509|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##NM_001142468|C6orf203|51250|chromosome 6 open reading frame 203##NM_001142470|C6orf203|51250|chromosome 6 open reading frame 203##NM_016487|C6orf203|51250|chromosome 6 open reading frame 203##AF151064|C6orf203|51250|chromosome 6 open reading frame 203##AK091564|C6orf203|51250|chromosome 6 open reading frame 203##BC131628|BEND3|57673|BEN domain containing 3##NM_001080450|BEND3|57673|BEN domain containing 3	0.274324	denovo_WM_21:14:0.205
chr1	3541371	3541533	reg1000861.p2	6.269	+	AB231860 NM_001409	-13394	-	TSC_hg19_v1_chr1_-_3447976 AB011539	-93460	-	AK310408 TSC_hg19_v1_chr1_+_3388187 AK296150	-153268	+	TSC_hg19_v1_chr1_+_3541565 NM_182752 AK096427	112	+	AK298343 TSC_hg19_v1_chr1_+_3541608 AK289919 BC019034	157	+	CU678066 AB034912 AK000437 AK225525 BC002611 BC086311 TSC_hg19_v1_chr1_-_3566668 AK302397 NM_017818	25164	-	AB231860|MEGF6|1953|multiple EGF-like-domains 6##NM_001409|MEGF6|1953|multiple EGF-like-domains 6##AB011539|MEGF6|1953|multiple EGF-like-domains 6##AK310408|ARHGEF16|27237|Rho guanine nucleotide exchange factor (GEF) 16##AK296150|ARHGEF16|27237|Rho guanine nucleotide exchange factor (GEF) 16##NM_182752|TPRG1L|127262|tumor protein p63 regulated 1-like##AK096427|TPRG1L|127262|tumor protein p63 regulated 1-like##AK298343|TPRG1L|127262|tumor protein p63 regulated 1-like##AK289919|TPRG1L|127262|tumor protein p63 regulated 1-like##BC019034|TPRG1L|127262|tumor protein p63 regulated 1-like##AB034912|WRAP73|49856|WD repeat containing, antisense to TP73##AK000437|WRAP73|49856|WD repeat containing, antisense to TP73##AK225525|WRAP73|49856|WD repeat containing, antisense to TP73##BC002611|WRAP73|49856|WD repeat containing, antisense to TP73##BC086311|WRAP73|49856|WD repeat containing, antisense to TP73##AK302397|WRAP73|49856|WD repeat containing, antisense to TP73##NM_017818|WRAP73|49856|WD repeat containing, antisense to TP73	1.03267	denovo_WM_21:-15:0.502	denovo_WM_21:76:0.502
chr21	30449124	30449273	reg1000772.p1	6.265	+	AK308063 TSC_hg19_v1_chr21_-_30445995 AK298801 BC072001 BC005220 NM_006585	-3209	-	TSC_hg19_v1_chr21_-_30445966 BC012584 BC095470	-3241	-	AB590043 BC035472 TSC_hg19_v1_chr21_-_30445937 AK222490 D13627	-3268	-	AY171599 NM_020152	3674	+	TSC_hg19_v1_chr21_+_30517918 AK309998 EF219160	68712	+	TSC_hg19_v1_chr21_+_30671158 AK291021 AB002803	221966	+	AK308063|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##AK298801|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##BC072001|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##BC005220|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##NM_006585|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##BC012584|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##BC095470|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##BC035472|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##AK222490|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##D13627|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##AY171599|C21orf7|56911|chromosome 21 open reading frame 7##NM_020152|C21orf7|56911|chromosome 21 open reading frame 7##AK309998|C21orf7|56911|chromosome 21 open reading frame 7##EF219160|C21orf7|56911|chromosome 21 open reading frame 7##AK291021|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##AB002803|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1	0.341064	denovo_WM_21:17:0.274
chr4	140004131	140004305	reg1000737.p2	6.264	+	TSC_hg19_v1_chr4_+_139936938 AF183961 NM_012118 BC021963 BC023512 BC077723 BC113494 BC113500	-67225	+	AB385133 AJ277882 AB040875 BC012087 AK314855 AF252872 AB026891 AF200708 TSC_hg19_v1_chr4_-_139163504 AK290359 NM_014331	-840854	-	AB046782 NM_019035 TSC_hg19_v1_chr4_-_138453642 AK298607 BC071581 BX647786	-1550576	-	CU688002 CU689992 DQ890870 DQ894026 TSC_hg19_v1_chr4_-_140005382 AK301307 AF256223	1185	-	TSC_hg19_v1_chr4_-_140005477 U43189 AK316455 DQ359746 BC065025 BC034951 NM_006874	1393	-	U43188 NM_201999	56385	-	AF183961|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##NM_012118|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC021963|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC023512|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC077723|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC113494|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC113500|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##AJ277882|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AB040875|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##BC012087|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AK314855|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AF252872|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AB026891|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AF200708|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AK290359|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##NM_014331|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AB046782|PCDH18|54510|protocadherin 18##NM_019035|PCDH18|54510|protocadherin 18##AK298607|PCDH18|54510|protocadherin 18##BC071581|PCDH18|54510|protocadherin 18##BX647786|PCDH18|54510|protocadherin 18##DQ890870|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##DQ894026|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AK301307|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AF256223|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##U43189|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AK316455|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##DQ359746|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##BC065025|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##BC034951|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##NM_006874|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##U43188|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##NM_201999|ELF2|1998|E74-like factor 2 (ets domain transcription factor)	0.426928	denovo_WM_21:-24:0.427
chr12	49716902	49717015	reg1000667.p1	6.263	+	NM_006262 TSC_hg19_v1_chr12_+_49688929 BC032703 AB528454 CU689492 DQ893358 DQ896677	-28013	+	TSC_hg19_v1_chr12_+_49658867 BC011790 BC004949 BC033064 BC051297 BC019298 BC021088	-58074	+	TSC_hg19_v1_chr12_+_49658864 D28390 AK223024 BC005946 NM_032704	-58095	+	NM_001100620 NM_005480 TSC_hg19_v1_chr12_+_49717037 AK315211 AK296811 AK309716 AK310709 AK299302 BC032583 BC018627 BC011597	78	+	BC110812 AF466366 NM_001008223	14005	-	TSC_hg19_v1_chr12_+_49740718 AK055747	23745	+	NM_006262|PRPH|5630|peripherin##BC032703|PRPH|5630|peripherin##DQ893358|PRPH|5630|peripherin##DQ896677|PRPH|5630|peripherin##BC011790|TUBA1C|84790|tubulin, alpha 1c##BC004949|TUBA1C|84790|tubulin, alpha 1c##BC033064|TUBA1C|84790|tubulin, alpha 1c##BC051297|TUBA1C|84790|tubulin, alpha 1c##BC019298|TUBA1C|84790|tubulin, alpha 1c##BC021088|TUBA1C|84790|tubulin, alpha 1c##D28390|TUBA1C|84790|tubulin, alpha 1c##AK223024|TUBA1C|84790|tubulin, alpha 1c##BC005946|TUBA1C|84790|tubulin, alpha 1c##NM_032704|TUBA1C|84790|tubulin, alpha 1c##NM_001100620|TROAP|10024|trophinin associated protein (tastin)##NM_005480|TROAP|10024|trophinin associated protein (tastin)##AK315211|TROAP|10024|trophinin associated protein (tastin)##AK296811|TROAP|10024|trophinin associated protein (tastin)##AK309716|TROAP|10024|trophinin associated protein (tastin)##AK310709|TROAP|10024|trophinin associated protein (tastin)##AK299302|TROAP|10024|trophinin associated protein (tastin)##BC032583|TROAP|10024|trophinin associated protein (tastin)##BC018627|TROAP|10024|trophinin associated protein (tastin)##BC011597|TROAP|10024|trophinin associated protein (tastin)##BC110812|C1QL4|338761|complement component 1, q subcomponent-like 4##AF466366|C1QL4|338761|complement component 1, q subcomponent-like 4##NM_001008223|C1QL4|338761|complement component 1, q subcomponent-like 4##AK055747|DNAJC22|79962|DnaJ (Hsp40) homolog, subfamily C, member 22	1.346851	denovo_WM_21:66:0.594	denovo_WM_21:-77:0.699
chr3	113415566	113415673	reg1000330.p1	6.257	+	TSC_hg19_v1_chr3_-_113415490 BC043383 NM_001009899	-207	-	NM_017699	-164402	+	AY099107 BC036951 TSC_hg19_v1_chr3_-_113234023 AK057966 AL832327 AL832148 NM_144718	-181626	-	AK296456 TSC_hg19_v1_chr3_-_113464788	49095	-	TSC_hg19_v1_chr3_-_113465043 CR749314 AK023090 AK307184 BC012731 AK311403 AK023256	49424	-	TSC_hg19_v1_chr3_-_113465109 NM_025146	49514	-	BC043383|KIAA2018|205717|KIAA2018##NM_001009899|KIAA2018|205717|KIAA2018##NM_017699|SIDT1|54847|SID1 transmembrane family, member 1##AY099107|SPICE1|152185|spindle and centriole associated protein 1##BC036951|SPICE1|152185|spindle and centriole associated protein 1##AK057966|SPICE1|152185|spindle and centriole associated protein 1##AL832327|SPICE1|152185|spindle and centriole associated protein 1##AL832148|SPICE1|152185|spindle and centriole associated protein 1##NM_144718|SPICE1|152185|spindle and centriole associated protein 1##AK296456|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##CR749314|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##AK023090|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##AK307184|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##BC012731|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##AK023256|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##NM_025146|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit	1.001037	denovo_WM_21:10:0.985
chr19	49164207	49164354	reg1000524.p1	6.255	+	AF067662 AB018195 TSC_hg19_v1_chr19_-_49149299 AY358967 NM_001217	-14929	-	AB208807 TSC_hg19_v1_chr19_-_49140623 BC011965 U79283 AK310025 NM_001352	-23676	-	BC010671 NM_001204160 EF107108 AK125560	-36034	+	BC018654 BC018697 BC033207 NM_145807 BC021210	11993	-	NM_000511 NM_001097638 AK290277 D87942 BC001899 BC121066	34981	+	AK093389 AX748093 NM_182574 BC106047	55965	-	AF067662|CA11|770|carbonic anhydrase XI##AB018195|CA11|770|carbonic anhydrase XI##AY358967|CA11|770|carbonic anhydrase XI##NM_001217|CA11|770|carbonic anhydrase XI##AB208807|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##BC011965|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##U79283|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##AK310025|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##NM_001352|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##BC010671|SPHK2|56848|sphingosine kinase 2##NM_001204160|SPHK2|56848|sphingosine kinase 2##EF107108|SPHK2|56848|sphingosine kinase 2##AK125560|SPHK2|56848|sphingosine kinase 2##BC018654|NTN5|126147|netrin 5##BC018697|NTN5|126147|netrin 5##BC033207|NTN5|126147|netrin 5##NM_145807|NTN5|126147|netrin 5##BC021210|NTN5|126147|netrin 5##NM_000511|FUT2|2524|fucosyltransferase 2 (secretor status included)##NM_001097638|FUT2|2524|fucosyltransferase 2 (secretor status included)##AK290277|FUT2|2524|fucosyltransferase 2 (secretor status included)##D87942|FUT2|2524|fucosyltransferase 2 (secretor status included)##BC001899|FUT2|2524|fucosyltransferase 2 (secretor status included)##BC121066|FUT2|2524|fucosyltransferase 2 (secretor status included)##AK093389|MAMSTR|284358|MEF2 activating motif and SAP domain containing transcriptional regulator##NM_182574|MAMSTR|284358|MEF2 activating motif and SAP domain containing transcriptional regulator##BC106047|MAMSTR|284358|MEF2 activating motif and SAP domain containing transcriptional regulator	1.104902	denovo_WM_21:11:0.983
chr8	41386622	41386771	reg1000775.p1	6.250	+	AF068291 TSC_hg19_v1_chr8_+_41348140 BC012032 NM_001002296	-38547	+	TSC_hg19_v1_chr8_+_41348114 AB104615 BC001227 AF125102	-38584	+	TSC_hg19_v1_chr8_+_41348100 AK026613	-38597	+	NM_032336 AK299207 BC027454 TSC_hg19_v1_chr8_+_41386745 BC005995	41	+	TSC_hg19_v1_chr8_+_41386779 AK095334 AK313373	76	+	TSC_hg19_v1_chr8_+_41435710 NM_178819 AF406612	48998	+	AF068291|GOLGA7|51125|golgin A7##BC012032|GOLGA7|51125|golgin A7##NM_001002296|GOLGA7|51125|golgin A7##AB104615|GOLGA7|51125|golgin A7##BC001227|GOLGA7|51125|golgin A7##AF125102|GOLGA7|51125|golgin A7##AK026613|GOLGA7|51125|golgin A7##NM_032336|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##AK299207|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##BC027454|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##BC005995|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##AK095334|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##AK313373|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##NM_178819|AGPAT6|137964|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)##AF406612|AGPAT6|137964|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	0.51973	denovo_WM_21:-2:0.520
chr10	58121031	58121152	reg1000671.p1	6.249	+	AK093808 BC020979 AK293416 TSC_hg19_v1_chr10_-_58121021 AK298148 BC110399 NM_001005413 NM_007057 NM_032997	-65	-	TSC_hg19_v1_chr10_-_58121017 AF067656 AK225509	-77	-	NM_001190478 TSC_hg19_v1_chr10_+_57358800	-762317	+	TSC_hg19_v1_chr10_-_60027655 BC016612 BC065709 NM_152230	1906570	-	BC005962 TSC_hg19_v1_chr10_+_60028929 NM_018464 BC059168 AF220049 BC008474 BC007043 AY960578 AK312017	1907855	+	TSC_hg19_v1_chr10_+_60094765 NM_001204880 NM_003338 AK291901 BC005980 BC015997 AF257220 AJ272367 X78140 AB590170 DQ893111 DQ896385 BT007041	1973745	+	AK093808|ZWINT|11130|ZW10 interactor##BC020979|ZWINT|11130|ZW10 interactor##AK293416|ZWINT|11130|ZW10 interactor##AK298148|ZWINT|11130|ZW10 interactor##BC110399|ZWINT|11130|ZW10 interactor##NM_001005413|ZWINT|11130|ZW10 interactor##NM_007057|ZWINT|11130|ZW10 interactor##NM_032997|ZWINT|11130|ZW10 interactor##AF067656|ZWINT|11130|ZW10 interactor##AK225509|ZWINT|11130|ZW10 interactor##NM_001190478|MTRNR2L5|100463289|MT-RNR2-like 5##BC016612|IPMK|253430|inositol polyphosphate multikinase##BC065709|IPMK|253430|inositol polyphosphate multikinase##NM_152230|IPMK|253430|inositol polyphosphate multikinase##BC005962|CISD1|55847|CDGSH iron sulfur domain 1##NM_018464|CISD1|55847|CDGSH iron sulfur domain 1##BC059168|CISD1|55847|CDGSH iron sulfur domain 1##AF220049|CISD1|55847|CDGSH iron sulfur domain 1##BC008474|CISD1|55847|CDGSH iron sulfur domain 1##BC007043|CISD1|55847|CDGSH iron sulfur domain 1##AY960578|CISD1|55847|CDGSH iron sulfur domain 1##AK312017|CISD1|55847|CDGSH iron sulfur domain 1##NM_001204880|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##NM_003338|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AK291901|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##BC005980|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##BC015997|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AF257220|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AJ272367|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##X78140|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##DQ893111|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##DQ896385|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##BT007041|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1	0.119268	
chr19	14247821	14248005	reg1000272.p2	6.249	+	AK302134 TSC_hg19_v1_chr19_-_14247402 BC036521 AK001466 NM_018154	-491	-	AB104486 AB463417 CR457235 GQ129346 GQ129347 AF279307 BC007726 BC010014 BC002518 TSC_hg19_v1_chr19_-_14247395 AK223080 AK001288	-581	-	TSC_hg19_v1_chr19_-_14228563 AK290147	-19344	-	TSC_hg19_v1_chr19_+_14247979 BX537706	78	+	BC013275 BC072445 AK022001 TSC_hg19_v1_chr19_-_14260830 BC090949	12887	-	AF307079 AB020628 NM_001008701 NM_014921 TSC_hg19_v1_chr19_-_14317074	69135	-	AK302134|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##BC036521|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##AK001466|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##NM_018154|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##AB104486|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##CR457235|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##GQ129346|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##GQ129347|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##AF279307|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##BC007726|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##BC010014|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##AK223080|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##AK001288|ASF1B|55723|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)##AK290147|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##BX537706|LOC100507373|100507373|uncharacterized LOC100507373##BC013275|LPHN1|22859|latrophilin 1##BC072445|LPHN1|22859|latrophilin 1##AK022001|LPHN1|22859|latrophilin 1##BC090949|LPHN1|22859|latrophilin 1##AF307079|LPHN1|22859|latrophilin 1##AB020628|LPHN1|22859|latrophilin 1##NM_001008701|LPHN1|22859|latrophilin 1##NM_014921|LPHN1|22859|latrophilin 1	0.160398	
chr22	30820179	30820333	reg1000612.p2	6.248	+	NM_001204204 NM_012429 NM_033382 AL096881 TSC_hg19_v1_chr22_+_30793006 AK223587 BC048337 AK314390 AK091402 BC058915 AB033012 CR456571 AK303751 AK296540 CU013170 CU013458	-27241	+	NM_001017981 AB464176	-36954	-	TSC_hg19_v1_chr22_-_30752884 BC007684 AK303273 NM_001005409 NM_005877	-67320	-	NM_001003704 NM_016498 AF151076 AF060924 BC030989 AK026104 BC009300 TSC_hg19_v1_chr22_+_30821776 BC001608 BC014446 CR456345 BC046132 AB528187 CU013056 CU013344	1483	+	AY158086 BC069641 BC101001 BC101002 BC101003 BC101004 AK298079 AK131358 AY240872 NM_174975	47732	-	AY158085 FJ824055 BC139912 BC136358 BC136359 AK093448 AK092002 AK093418 AX747303 AX748114 NM_001161368 NM_174977	81391	-	NM_001204204|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##NM_012429|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##NM_033382|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##AL096881|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##AK223587|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##BC048337|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##AK314390|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##AK091402|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##BC058915|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##AB033012|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##CR456571|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##AK303751|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##AK296540|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##CU013170|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##CU013458|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##NM_001017981|RNF215|200312|ring finger protein 215##BC007684|SF3A1|10291|splicing factor 3a, subunit 1, 120kDa##AK303273|SF3A1|10291|splicing factor 3a, subunit 1, 120kDa##NM_001005409|SF3A1|10291|splicing factor 3a, subunit 1, 120kDa##NM_005877|SF3A1|10291|splicing factor 3a, subunit 1, 120kDa##NM_001003704|MTFP1|51537|mitochondrial fission process 1##NM_016498|MTFP1|51537|mitochondrial fission process 1##AF151076|MTFP1|51537|mitochondrial fission process 1##AF060924|MTFP1|51537|mitochondrial fission process 1##BC030989|MTFP1|51537|mitochondrial fission process 1##AK026104|MTFP1|51537|mitochondrial fission process 1##BC009300|MTFP1|51537|mitochondrial fission process 1##BC001608|MTFP1|51537|mitochondrial fission process 1##BC014446|MTFP1|51537|mitochondrial fission process 1##CR456345|MTFP1|51537|mitochondrial fission process 1##BC046132|MTFP1|51537|mitochondrial fission process 1##AY158086|SEC14L3|266629|SEC14-like 3 (S. cerevisiae)##BC069641|SEC14L3|266629|SEC14-like 3 (S. cerevisiae)##BC101001|SEC14L3|266629|SEC14-like 3 (S. cerevisiae)##BC101002|SEC14L3|266629|SEC14-like 3 (S. cerevisiae)##BC101003|SEC14L3|266629|SEC14-like 3 (S. cerevisiae)##BC101004|SEC14L3|266629|SEC14-like 3 (S. cerevisiae)##AK298079|SEC14L3|266629|SEC14-like 3 (S. cerevisiae)##AK131358|SEC14L3|266629|SEC14-like 3 (S. cerevisiae)##AY240872|SEC14L3|266629|SEC14-like 3 (S. cerevisiae)##NM_174975|SEC14L3|266629|SEC14-like 3 (S. cerevisiae)##AY158085|SEC14L4|284904|SEC14-like 4 (S. cerevisiae)##FJ824055|SEC14L4|284904|SEC14-like 4 (S. cerevisiae)##BC139912|SEC14L4|284904|SEC14-like 4 (S. cerevisiae)##BC136358|SEC14L4|284904|SEC14-like 4 (S. cerevisiae)##BC136359|SEC14L4|284904|SEC14-like 4 (S. cerevisiae)##AK093448|SEC14L4|284904|SEC14-like 4 (S. cerevisiae)##AK092002|SEC14L4|284904|SEC14-like 4 (S. cerevisiae)##AK093418|SEC14L4|284904|SEC14-like 4 (S. cerevisiae)##NM_001161368|SEC14L4|284904|SEC14-like 4 (S. cerevisiae)##NM_174977|SEC14L4|284904|SEC14-like 4 (S. cerevisiae)	0.0	
chr7	56174219	56174338	reg1000837.p1	6.242	+	TSC_hg19_v1_chr7_-_56174186 NM_016139	-77	-	TSC_hg19_v1_chr7_-_56174151 AF078845	-119	-	AY605046 CU688146 EU832651 EU832729 AY633613 BC015639 TSC_hg19_v1_chr7_-_56174144 BC100275 Z36851 BC003079 BC071985 BC066331	-153	-	Y10275 TSC_hg19_v1_chr7_-_56184079 BC043523 NM_001145712	9765	-	AF277624 NM_033273	1033292	-	AK131575 NM_001159279	1335604	+	NM_016139|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##AF078845|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##AY605046|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##EU832651|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##EU832729|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##AY633613|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##BC015639|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##BC100275|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##BC003079|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##BC071985|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##BC066331|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##BC043523|LOC389493|389493|uncharacterized protein LOC389493##NM_001145712|LOC389493|389493|uncharacterized protein LOC389493##AF277624|ZNF479|90827|zinc finger protein 479##NM_033273|ZNF479|90827|zinc finger protein 479##AK131575|ZNF716|441234|zinc finger protein 716##NM_001159279|ZNF716|441234|zinc finger protein 716	0.132518	
chr8	25316351	25316535	reg1000173.p2	6.240	+	TSC_hg19_v1_chr8_-_25315949 NM_017634	-463	-	TSC_hg19_v1_chr8_-_25315802 BC068518	-626	-	TSC_hg19_v1_chr8_-_25315789 CU676874 BC021216 AK298518	-676	-	NM_152562	69	+	AK292505 TSC_hg19_v1_chr8_+_25316724	279	+	TSC_hg19_v1_chr8_+_25316748 AK299278 AL833627 BC015691 BC104450 BC104451	391	+	NM_017634|KCTD9|54793|potassium channel tetramerisation domain containing 9##BC068518|KCTD9|54793|potassium channel tetramerisation domain containing 9##BC021216|KCTD9|54793|potassium channel tetramerisation domain containing 9##AK298518|KCTD9|54793|potassium channel tetramerisation domain containing 9##NM_152562|CDCA2|157313|cell division cycle associated 2##AK292505|CDCA2|157313|cell division cycle associated 2##AK299278|CDCA2|157313|cell division cycle associated 2##AL833627|CDCA2|157313|cell division cycle associated 2##BC015691|CDCA2|157313|cell division cycle associated 2##BC104450|CDCA2|157313|cell division cycle associated 2##BC104451|CDCA2|157313|cell division cycle associated 2	0.606454	denovo_WM_21:2:0.584
chr15	85923628	85923734	reg1000810.p2	6.234	+	AL109778 TSC_hg19_v1_chr15_+_85666316 AL109687	-257363	+	BC075822 TSC_hg19_v1_chr15_+_85525333	-398355	+	NM_002605 NM_173454 AF388183 AF388184 AF388185 AF388186 AF388187 AF332653 TSC_hg19_v1_chr15_+_85525261 BC036190	-398444	+	TSC_hg19_v1_chr15_+_85923835 AK125331 BC050312 NM_006738 NM_007200 AF406992	210	+	AF127481 NM_144767	296586	+	TSC_hg19_v1_chr15_-_86338156 AL136796 BC028100 AK056663 AK315541 AK092231 AX747419 AY764034	414416	-	AL109778|PDE8A|5151|phosphodiesterase 8A##AL109687|PDE8A|5151|phosphodiesterase 8A##BC075822|PDE8A|5151|phosphodiesterase 8A##NM_002605|PDE8A|5151|phosphodiesterase 8A##NM_173454|PDE8A|5151|phosphodiesterase 8A##AF388183|PDE8A|5151|phosphodiesterase 8A##AF388184|PDE8A|5151|phosphodiesterase 8A##AF388185|PDE8A|5151|phosphodiesterase 8A##AF388186|PDE8A|5151|phosphodiesterase 8A##AF388187|PDE8A|5151|phosphodiesterase 8A##AF332653|PDE8A|5151|phosphodiesterase 8A##BC036190|PDE8A|5151|phosphodiesterase 8A##AK125331|AKAP13|11214|A kinase (PRKA) anchor protein 13##BC050312|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_006738|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_007200|AKAP13|11214|A kinase (PRKA) anchor protein 13##AF406992|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_144767|AKAP13|11214|A kinase (PRKA) anchor protein 13##AL136796|KLHL25|64410|kelch-like 25 (Drosophila)##BC028100|KLHL25|64410|kelch-like 25 (Drosophila)##AK056663|KLHL25|64410|kelch-like 25 (Drosophila)##AK315541|KLHL25|64410|kelch-like 25 (Drosophila)##AK092231|KLHL25|64410|kelch-like 25 (Drosophila)##AY764034|KLHL25|64410|kelch-like 25 (Drosophila)	0.139291	
chr12	6665211	6665339	reg1000823.p1	6.230	+	TSC_hg19_v1_chr12_-_6665250 BC001790 BC010431 BC023664 BC110387 NM_001039670 NM_001193457 NM_080730	-17	-	M36164 TSC_hg19_v1_chr12_+_6647482	-17858	+	TSC_hg19_v1_chr12_+_6643982 M17851 AY633612 BC023632 DQ891557 DQ894744 AB463693 CU679249 J02642 BT006893 CR407671	-21293	+	TSC_hg19_v1_chr12_-_6677453 BC000656 BC065257 AK129852 BC106072 BC082985 BC128183 BC128184 AK056208 AK307582 NM_001033714 NM_006170	12191	-	CR936680 EU446505 TSC_hg19_v1_chr12_-_6715604	50293	-	X86691 TSC_hg19_v1_chr12_-_6716523 BC014964 BC025962 BC038596	51226	-	BC001790|IFFO1|25900|intermediate filament family orphan 1##BC010431|IFFO1|25900|intermediate filament family orphan 1##BC023664|IFFO1|25900|intermediate filament family orphan 1##BC110387|IFFO1|25900|intermediate filament family orphan 1##NM_001039670|IFFO1|25900|intermediate filament family orphan 1##NM_001193457|IFFO1|25900|intermediate filament family orphan 1##NM_080730|IFFO1|25900|intermediate filament family orphan 1##M36164|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##M17851|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##AY633612|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC023632|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##DQ891557|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##DQ894744|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##J02642|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BT006893|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##CR407671|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC000656|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##BC065257|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##AK129852|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##BC106072|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##BC082985|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##BC128183|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##BC128184|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##AK056208|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##AK307582|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##NM_001033714|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##NM_006170|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##CR936680|CHD4|1108|chromodomain helicase DNA binding protein 4##EU446505|CHD4|1108|chromodomain helicase DNA binding protein 4##X86691|CHD4|1108|chromodomain helicase DNA binding protein 4##BC014964|CHD4|1108|chromodomain helicase DNA binding protein 4##BC025962|CHD4|1108|chromodomain helicase DNA binding protein 4##BC038596|CHD4|1108|chromodomain helicase DNA binding protein 4	0.956615	denovo_WM_21:73:0.911
chr17	43212843	43213022	reg1000741.p1	6.224	+	NM_001135704 TSC_hg19_v1_chr17_+_43209980 BC041143	-2950	+	AB075844 AL834392 AB384653 TSC_hg19_v1_chr17_-_43209885 BC072384 AK074240 NM_133373	-3117	-	TSC_hg19_v1_chr17_+_43138687 BC006538 BC006569 NM_021079 AF043324 AK291936 AK303517 AB527516 BC008579 AF020500	-74240	+	AK316359 NM_001135705 NM_001135706 NM_001135707 NM_024722 BC022000 AK296167 TSC_hg19_v1_chr17_+_43213056 AK023384 AK075104 BC029164 AB073387	125	+	NM_006460	11751	+	TSC_hg19_v1_chr17_+_43225841 AK023624 AB021179	12919	+	NM_001135704|ACBD4|79777|acyl-CoA binding domain containing 4##BC041143|ACBD4|79777|acyl-CoA binding domain containing 4##AB075844|PLCD3|113026|phospholipase C, delta 3##AL834392|PLCD3|113026|phospholipase C, delta 3##BC072384|PLCD3|113026|phospholipase C, delta 3##AK074240|PLCD3|113026|phospholipase C, delta 3##NM_133373|PLCD3|113026|phospholipase C, delta 3##BC006538|NMT1|4836|N-myristoyltransferase 1##BC006569|NMT1|4836|N-myristoyltransferase 1##NM_021079|NMT1|4836|N-myristoyltransferase 1##AF043324|NMT1|4836|N-myristoyltransferase 1##AK291936|NMT1|4836|N-myristoyltransferase 1##AK303517|NMT1|4836|N-myristoyltransferase 1##BC008579|NMT1|4836|N-myristoyltransferase 1##AF020500|NMT1|4836|N-myristoyltransferase 1##AK316359|ACBD4|79777|acyl-CoA binding domain containing 4##NM_001135705|ACBD4|79777|acyl-CoA binding domain containing 4##NM_001135706|ACBD4|79777|acyl-CoA binding domain containing 4##NM_001135707|ACBD4|79777|acyl-CoA binding domain containing 4##NM_024722|ACBD4|79777|acyl-CoA binding domain containing 4##BC022000|ACBD4|79777|acyl-CoA binding domain containing 4##AK296167|ACBD4|79777|acyl-CoA binding domain containing 4##AK023384|ACBD4|79777|acyl-CoA binding domain containing 4##AK075104|ACBD4|79777|acyl-CoA binding domain containing 4##BC029164|ACBD4|79777|acyl-CoA binding domain containing 4##AB073387|ACBD4|79777|acyl-CoA binding domain containing 4##NM_006460|HEXIM1|10614|hexamethylene bis-acetamide inducible 1##AK023624|HEXIM1|10614|hexamethylene bis-acetamide inducible 1##AB021179|HEXIM1|10614|hexamethylene bis-acetamide inducible 1	1.005816	denovo_WM_21:60:0.976
chr19	39616234	39616354	reg1000546.p2	6.222	+	AK131245 NM_001004318	-41350	+	TSC_hg19_v1_chr19_-_39523185 BC030060 AF436061 BC014527 NM_178820	-93061	-	CU677033 TSC_hg19_v1_chr19_-_39522905	-93395	-	TSC_hg19_v1_chr19_+_39616436 AK294586 NM_001014831 NM_001014832 NM_001014834 NM_001014835 NM_005884 AK293517 AK291839 AX775863 AX775865 AK300632 BC002921 AX775871 BC034511 AK304651 BC011368 AL834236 AX775867 AX775869 BC025282 AF005046 AB032968	151	+	BC092493 AK123941 BC067874 NM_001001414 TSC_hg19_v1_chr19_+_39687603	71308	+	BC039541 AK130951 TSC_hg19_v1_chr19_-_39694904 BC121075 BC121076 NM_001080468	78604	-	AK131245|PAPL|390928|iron/zinc purple acid phosphatase-like protein##NM_001004318|PAPL|390928|iron/zinc purple acid phosphatase-like protein##BC030060|FBXO27|126433|F-box protein 27##AF436061|FBXO27|126433|F-box protein 27##BC014527|FBXO27|126433|F-box protein 27##NM_178820|FBXO27|126433|F-box protein 27##AK294586|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##NM_001014831|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##NM_001014832|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##NM_001014834|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##NM_001014835|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##NM_005884|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##AK293517|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##AK291839|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##AX775863|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##AX775865|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##AK300632|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##BC002921|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##AX775871|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##BC034511|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##AK304651|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##BC011368|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##AL834236|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##AX775867|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##AX775869|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##BC025282|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##AF005046|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##AB032968|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##BC092493|NCCRP1|342897|non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)##AK123941|NCCRP1|342897|non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)##BC067874|NCCRP1|342897|non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)##NM_001001414|NCCRP1|342897|non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)##BC039541|SYCN|342898|syncollin##AK130951|SYCN|342898|syncollin##BC121075|SYCN|342898|syncollin##BC121076|SYCN|342898|syncollin##NM_001080468|SYCN|342898|syncollin	1.023319	denovo_WM_21:-3:0.908
chr1	167691112	167691209	reg1000726.p2	6.221	+	TSC_hg19_v1_chr1_+_167599557 AL137762 BC101536 BC101562 BC143428	-91591	+	AF545852 TSC_hg19_v1_chr1_+_167599495 NM_052862 AK130798	-91747	+	TSC_hg19_v1_chr1_-_167523043 NM_003851	-168097	-	TSC_hg19_v1_chr1_+_167691226 NM_001146191 NM_003953 NM_024569 AK297112 AK075334 AK307250 AK291249 AY359019 AF181660 AF478447 BC000984 BC007881 AF095727 AF087020 AF092425 AF095726 AK315546 AB527648 AF239756 BT019542 CR542160 HQ447352	168	+	BC117366 BC117372 AF176813 AF299350 AF331033 AK310395 AK310531 AK302884 NM_001167749 NM_018417	192187	-	AB528078 AM393085 CR407632 CR533473 TSC_hg19_v1_chr1_-_167905197 BC104157 BC104158	213982	-	AL137762|RCSD1|92241|RCSD domain containing 1##BC101536|RCSD1|92241|RCSD domain containing 1##BC101562|RCSD1|92241|RCSD domain containing 1##BC143428|RCSD1|92241|RCSD domain containing 1##AF545852|RCSD1|92241|RCSD domain containing 1##NM_052862|RCSD1|92241|RCSD domain containing 1##NM_003851|CREG1|8804|cellular repressor of E1A-stimulated genes 1##NM_001146191|MPZL1|9019|myelin protein zero-like 1##NM_003953|MPZL1|9019|myelin protein zero-like 1##NM_024569|MPZL1|9019|myelin protein zero-like 1##AK297112|MPZL1|9019|myelin protein zero-like 1##AK075334|MPZL1|9019|myelin protein zero-like 1##AK307250|MPZL1|9019|myelin protein zero-like 1##AK291249|MPZL1|9019|myelin protein zero-like 1##AY359019|MPZL1|9019|myelin protein zero-like 1##AF181660|MPZL1|9019|myelin protein zero-like 1##AF478447|MPZL1|9019|myelin protein zero-like 1##BC000984|MPZL1|9019|myelin protein zero-like 1##BC007881|MPZL1|9019|myelin protein zero-like 1##AF095727|MPZL1|9019|myelin protein zero-like 1##AF087020|MPZL1|9019|myelin protein zero-like 1##AF092425|MPZL1|9019|myelin protein zero-like 1##AF095726|MPZL1|9019|myelin protein zero-like 1##AK315546|MPZL1|9019|myelin protein zero-like 1##AF239756|MPZL1|9019|myelin protein zero-like 1##BT019542|MPZL1|9019|myelin protein zero-like 1##CR542160|MPZL1|9019|myelin protein zero-like 1##HQ447352|MPZL1|9019|myelin protein zero-like 1##BC117366|ADCY10|55811|adenylate cyclase 10 (soluble)##BC117372|ADCY10|55811|adenylate cyclase 10 (soluble)##AF176813|ADCY10|55811|adenylate cyclase 10 (soluble)##AF299350|ADCY10|55811|adenylate cyclase 10 (soluble)##AF331033|ADCY10|55811|adenylate cyclase 10 (soluble)##AK310395|ADCY10|55811|adenylate cyclase 10 (soluble)##AK310531|ADCY10|55811|adenylate cyclase 10 (soluble)##AK302884|ADCY10|55811|adenylate cyclase 10 (soluble)##NM_001167749|ADCY10|55811|adenylate cyclase 10 (soluble)##NM_018417|ADCY10|55811|adenylate cyclase 10 (soluble)##AM393085|BRP44|25874|brain protein 44##CR407632|BRP44|25874|brain protein 44##CR533473|BRP44|25874|brain protein 44##BC104157|BRP44|25874|brain protein 44##BC104158|BRP44|25874|brain protein 44	0.877622	denovo_WM_21:17:0.878
chr2	242088870	242088995	reg1000806.p1	6.221	+	TSC_hg19_v1_chr2_-_242088865 D50925 AF387103 BC063585 AK056516 AK302417 BC050565 AK302561 NM_001252119 NM_001252122 NM_001252124 NM_015148	-61	-	TSC_hg19_v1_chr2_-_242041703 BC053533 AK093695 AK291665 AK294192 BX648184 AK131298 AF161359 AK296515 NM_182501	-47206	-	NM_001080437	-150678	+	AK308015 BC051689 TSC_hg19_v1_chr2_+_242089094	126	+	CR749231 NM_001252120	461	-	AK294043 TSC_hg19_v1_chr2_+_242089896 BC013001 BC000910 NM_002712 Z50749 BC012397 AB385583 BT007296 BT020134	959	+	D50925|PASK|23178|PAS domain containing serine/threonine kinase##AF387103|PASK|23178|PAS domain containing serine/threonine kinase##BC063585|PASK|23178|PAS domain containing serine/threonine kinase##AK056516|PASK|23178|PAS domain containing serine/threonine kinase##AK302417|PASK|23178|PAS domain containing serine/threonine kinase##BC050565|PASK|23178|PAS domain containing serine/threonine kinase##AK302561|PASK|23178|PAS domain containing serine/threonine kinase##NM_001252119|PASK|23178|PAS domain containing serine/threonine kinase##NM_001252122|PASK|23178|PAS domain containing serine/threonine kinase##NM_001252124|PASK|23178|PAS domain containing serine/threonine kinase##NM_015148|PASK|23178|PAS domain containing serine/threonine kinase##BC053533|MTERFD2|130916|MTERF domain containing 2##AK093695|MTERFD2|130916|MTERF domain containing 2##AK291665|MTERFD2|130916|MTERF domain containing 2##AK294192|MTERFD2|130916|MTERF domain containing 2##BX648184|MTERFD2|130916|MTERF domain containing 2##AK131298|MTERFD2|130916|MTERF domain containing 2##AF161359|MTERFD2|130916|MTERF domain containing 2##AK296515|MTERFD2|130916|MTERF domain containing 2##NM_182501|MTERFD2|130916|MTERF domain containing 2##NM_001080437|SNED1|25992|sushi, nidogen and EGF-like domains 1##AK308015|PPP1R7|5510|protein phosphatase 1, regulatory subunit 7##BC051689|PPP1R7|5510|protein phosphatase 1, regulatory subunit 7##CR749231|PASK|23178|PAS domain containing serine/threonine kinase##NM_001252120|PASK|23178|PAS domain containing serine/threonine kinase##AK294043|PPP1R7|5510|protein phosphatase 1, regulatory subunit 7##BC013001|PPP1R7|5510|protein phosphatase 1, regulatory subunit 7##BC000910|PPP1R7|5510|protein phosphatase 1, regulatory subunit 7##NM_002712|PPP1R7|5510|protein phosphatase 1, regulatory subunit 7##Z50749|PPP1R7|5510|protein phosphatase 1, regulatory subunit 7##BC012397|PPP1R7|5510|protein phosphatase 1, regulatory subunit 7##BT007296|PPP1R7|5510|protein phosphatase 1, regulatory subunit 7##BT020134|PPP1R7|5510|protein phosphatase 1, regulatory subunit 7	0.010183	
chr17	26646035	26646165	reg1000801.p2	6.215	+	AB384832 AK024686 TSC_hg19_v1_chr17_+_26370066	-276099	+	TSC_hg19_v1_chr17_+_26369661 AK315315 AF197898 NM_016231 AF180819	-276447	+	TSC_hg19_v1_chr17_-_26220392 AK055808 AK310926 NM_001076680	-425709	-	NM_014573 TSC_hg19_v1_chr17_+_26646214 L19183 AK299511 AK307678 BC017362 BC091504 AK293331	93	+	TSC_hg19_v1_chr17_-_26662482 AY224601 BC038094 AK297769 BC002640 NM_174887 AK309232	16386	-	NM_021137 TSC_hg19_v1_chr17_+_26662786 BC003694 AK300584 AK312387 BC001643 BC001949 BC006208 M80783	16603	+	AK024686|NLK|51701|nemo-like kinase##AK315315|NLK|51701|nemo-like kinase##AF197898|NLK|51701|nemo-like kinase##NM_016231|NLK|51701|nemo-like kinase##AF180819|NLK|51701|nemo-like kinase##AK055808|C17orf108|201229|chromosome 17 open reading frame 108##NM_001076680|C17orf108|201229|chromosome 17 open reading frame 108##NM_014573|TMEM97|27346|transmembrane protein 97##L19183|TMEM97|27346|transmembrane protein 97##AK299511|TMEM97|27346|transmembrane protein 97##AK307678|TMEM97|27346|transmembrane protein 97##BC017362|TMEM97|27346|transmembrane protein 97##BC091504|TMEM97|27346|transmembrane protein 97##AK293331|TMEM97|27346|transmembrane protein 97##AY224601|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##BC038094|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##BC002640|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##NM_174887|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##NM_021137|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##BC003694|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##AK300584|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##AK312387|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##BC001643|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##BC001949|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##M80783|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)	1.915812	denovo_WM_21:-15:0.333	denovo_WM_21:45:0.859	denovo_WM_21:-67:0.723
chr13	101327184	101327290	reg1000665.p1	6.211	+	NM_001079669 NM_032813 TSC_hg19_v1_chr13_-_101327108	-128	-	AK299859 TSC_hg19_v1_chr13_-_101327050 BX648008 AK056409 AK290345 BX647956	-181	-	TSC_hg19_v1_chr13_-_101241029 AK095850 NM_001195087	-86210	-	AY141972 AK094669 BC012128 NM_052867 TSC_hg19_v1_chr13_-_102068817	741524	-	TSC_hg19_v1_chr13_-_102068838 BC028390	741603	-	TSC_hg19_v1_chr13_+_102104985 AF072752 NM_004791 AK095875 AB008375 AK297744 BC036788 AK291340 AK308194	777758	+	NM_001079669|TMTC4|84899|transmembrane and tetratricopeptide repeat containing 4##NM_032813|TMTC4|84899|transmembrane and tetratricopeptide repeat containing 4##AK299859|TMTC4|84899|transmembrane and tetratricopeptide repeat containing 4##BX648008|TMTC4|84899|transmembrane and tetratricopeptide repeat containing 4##AK056409|TMTC4|84899|transmembrane and tetratricopeptide repeat containing 4##AK290345|TMTC4|84899|transmembrane and tetratricopeptide repeat containing 4##BX647956|TMTC4|84899|transmembrane and tetratricopeptide repeat containing 4##AK095850|A2LD1|87769|AIG2-like domain 1##NM_001195087|A2LD1|87769|AIG2-like domain 1##AY141972|NALCN|259232|sodium leak channel, non-selective##AK094669|NALCN|259232|sodium leak channel, non-selective##BC012128|NALCN|259232|sodium leak channel, non-selective##NM_052867|NALCN|259232|sodium leak channel, non-selective##BC028390|NALCN|259232|sodium leak channel, non-selective##AF072752|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##NM_004791|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AK095875|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AB008375|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AK297744|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##BC036788|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AK291340|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AK308194|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)	0.123696	
chr12	56727768	56727908	reg1000834.p2	6.208	+	AK310822 AB014610 BC024043 NM_001166279 NM_014871	-60	-	BX648106 BC094885 NM_001127460	-349	-	TSC_hg19_v1_chr12_-_56709831 AY032624 AY359102 NM_001190991 NM_014255	-17859	-	AY359083 NM_016584 AB030000 AF301620 BC066267 BC066268 BC066269 BC067511 BC067512 BC067513 AB527703 CU688124 CU688312	4905	+	BC051284 M97934 TSC_hg19_v1_chr12_-_56753892 AK310727 AK296939 AK296940	26045	-	TSC_hg19_v1_chr12_-_56753912 AK308051	26075	-	AK310822|PAN2|9924|PAN2 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)##AB014610|PAN2|9924|PAN2 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)##BC024043|PAN2|9924|PAN2 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)##NM_001166279|PAN2|9924|PAN2 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)##NM_014871|PAN2|9924|PAN2 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)##BX648106|PAN2|9924|PAN2 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)##BC094885|PAN2|9924|PAN2 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)##NM_001127460|PAN2|9924|PAN2 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)##AY032624|CNPY2|10330|canopy 2 homolog (zebrafish)##AY359102|CNPY2|10330|canopy 2 homolog (zebrafish)##NM_001190991|CNPY2|10330|canopy 2 homolog (zebrafish)##NM_014255|CNPY2|10330|canopy 2 homolog (zebrafish)##AY359083|IL23A|51561|interleukin 23, alpha subunit p19##NM_016584|IL23A|51561|interleukin 23, alpha subunit p19##AB030000|IL23A|51561|interleukin 23, alpha subunit p19##AF301620|IL23A|51561|interleukin 23, alpha subunit p19##BC066267|IL23A|51561|interleukin 23, alpha subunit p19##BC066268|IL23A|51561|interleukin 23, alpha subunit p19##BC066269|IL23A|51561|interleukin 23, alpha subunit p19##BC067511|IL23A|51561|interleukin 23, alpha subunit p19##BC067512|IL23A|51561|interleukin 23, alpha subunit p19##BC067513|IL23A|51561|interleukin 23, alpha subunit p19##BC051284|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##M97934|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##AK310727|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##AK296939|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##AK296940|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##AK308051|STAT2|6773|signal transducer and activator of transcription 2, 113kDa	1.985612	denovo_WM_21:11:0.993	denovo_WM_21:41:0.993
chr9	34329470	34329577	reg1000220.p2	6.204	+	TSC_hg19_v1_chr9_-_34329214 NM_194313 AK310014	-312	-	TSC_hg19_v1_chr9_+_34179058 AF222043 BC098141 BC098316 BC099726 BC100668	-150441	+	AK223235 AK309329 TSC_hg19_v1_chr9_+_34179047	-150476	+	NM_001161 NM_001244390 NM_147172 NM_147173 TSC_hg19_v1_chr9_+_34329566 AK310574 U30313	15	+	TSC_hg19_v1_chr9_-_34376864 BC070098 NM_020702	47410	-	AK225981 AF367474 TSC_hg19_v1_chr9_-_34381563 AK094751 NM_001252195 NM_147168 NM_147169	52024	-	NM_194313|KIF24|347240|kinesin family member 24##AK310014|KIF24|347240|kinesin family member 24##AF222043|UBAP1|51271|ubiquitin associated protein 1##BC098141|UBAP1|51271|ubiquitin associated protein 1##BC098316|UBAP1|51271|ubiquitin associated protein 1##BC099726|UBAP1|51271|ubiquitin associated protein 1##BC100668|UBAP1|51271|ubiquitin associated protein 1##AK223235|UBAP1|51271|ubiquitin associated protein 1##AK309329|UBAP1|51271|ubiquitin associated protein 1##NM_001161|NUDT2|318|nudix (nucleoside diphosphate linked moiety X)-type motif 2##NM_001244390|NUDT2|318|nudix (nucleoside diphosphate linked moiety X)-type motif 2##NM_147172|NUDT2|318|nudix (nucleoside diphosphate linked moiety X)-type motif 2##NM_147173|NUDT2|318|nudix (nucleoside diphosphate linked moiety X)-type motif 2##U30313|NUDT2|318|nudix (nucleoside diphosphate linked moiety X)-type motif 2##BC070098|KIAA1161|57462|KIAA1161##NM_020702|KIAA1161|57462|KIAA1161##AK225981|C9orf24|84688|chromosome 9 open reading frame 24##AF367474|C9orf24|84688|chromosome 9 open reading frame 24##AK094751|C9orf24|84688|chromosome 9 open reading frame 24##NM_001252195|C9orf24|84688|chromosome 9 open reading frame 24##NM_147168|C9orf24|84688|chromosome 9 open reading frame 24##NM_147169|C9orf24|84688|chromosome 9 open reading frame 24	0.985758	denovo_WM_21:16:0.986
chr4	2264068	2264193	reg1000255.p2	6.200	+	TSC_hg19_v1_chr4_-_2263830 BC002713	-307	-	AB463859 BT019969 BT019970 AF040963 AF082740 NM_006454 TSC_hg19_v1_chr4_-_2263788 BC068060	-378	-	AK056134 AK293948 AK303673 TSC_hg19_v1_chr4_-_2243849 CR749640 NM_024511 BC003648	-20262	-	BC035793 AK294874 TSC_hg19_v1_chr4_-_2366542 AK316484 NM_001172659 NM_001172660	102436	-	TSC_hg19_v1_chr4_-_2420373 BC137309 BC137310 BC053664 AB046863 BC032605 NM_001172656 NM_001172657 NM_001172658 NM_020972 AK294710	156274	-	TSC_hg19_v1_chr4_+_2420681 AK126028 NM_001193282	156567	+	BC002713|MXD4|10608|MAX dimerization protein 4##BT019969|MXD4|10608|MAX dimerization protein 4##BT019970|MXD4|10608|MAX dimerization protein 4##AF040963|MXD4|10608|MAX dimerization protein 4##AF082740|MXD4|10608|MAX dimerization protein 4##NM_006454|MXD4|10608|MAX dimerization protein 4##BC068060|MXD4|10608|MAX dimerization protein 4##AK056134|HAUS3|79441|HAUS augmin-like complex, subunit 3##AK293948|HAUS3|79441|HAUS augmin-like complex, subunit 3##AK303673|POLN|353497|polymerase (DNA directed) nu##CR749640|HAUS3|79441|HAUS augmin-like complex, subunit 3##NM_024511|HAUS3|79441|HAUS augmin-like complex, subunit 3##BC003648|HAUS3|79441|HAUS augmin-like complex, subunit 3##BC035793|ZFYVE28|57732|zinc finger, FYVE domain containing 28##AK294874|ZFYVE28|57732|zinc finger, FYVE domain containing 28##AK316484|ZFYVE28|57732|zinc finger, FYVE domain containing 28##NM_001172659|ZFYVE28|57732|zinc finger, FYVE domain containing 28##NM_001172660|ZFYVE28|57732|zinc finger, FYVE domain containing 28##BC137309|ZFYVE28|57732|zinc finger, FYVE domain containing 28##BC137310|ZFYVE28|57732|zinc finger, FYVE domain containing 28##BC053664|ZFYVE28|57732|zinc finger, FYVE domain containing 28##AB046863|ZFYVE28|57732|zinc finger, FYVE domain containing 28##BC032605|ZFYVE28|57732|zinc finger, FYVE domain containing 28##NM_001172656|ZFYVE28|57732|zinc finger, FYVE domain containing 28##NM_001172657|ZFYVE28|57732|zinc finger, FYVE domain containing 28##NM_001172658|ZFYVE28|57732|zinc finger, FYVE domain containing 28##NM_020972|ZFYVE28|57732|zinc finger, FYVE domain containing 28##AK294710|ZFYVE28|57732|zinc finger, FYVE domain containing 28##NM_001193282|LOC402160|402160|uncharacterized LOC402160	2.114162	denovo_WM_21:10:0.856	denovo_WM_21:51:0.426	denovo_WM_21:77:0.832
chr4	174255531	174255705	reg1000417.p1	6.195	+	BC001063 BC100019 BC021054 TSC_hg19_v1_chr4_-_174255505 BC000903 AK311864 NM_001130688 NM_002129	-89	-	Z17240 BT019782 BT019783 AB463732 DQ892288 DQ895487 NM_001130689 TSC_hg19_v1_chr4_-_174255014	-743	-	BC040577 TSC_hg19_v1_chr4_-_174090813	-164811	-	TSC_hg19_v1_chr4_+_174292088 NM_003864 AF055993	36445	+	TSC_hg19_v1_chr4_+_174292104 BC016757	36490	+	AJ224677 NM_007281	64998	-	BC001063|HMGB2|3148|high mobility group box 2##BC100019|HMGB2|3148|high mobility group box 2##BC000903|HMGB2|3148|high mobility group box 2##AK311864|HMGB2|3148|high mobility group box 2##NM_001130688|HMGB2|3148|high mobility group box 2##NM_002129|HMGB2|3148|high mobility group box 2##Z17240|HMGB2|3148|high mobility group box 2##BT019782|HMGB2|3148|high mobility group box 2##BT019783|HMGB2|3148|high mobility group box 2##DQ892288|HMGB2|3148|high mobility group box 2##DQ895487|HMGB2|3148|high mobility group box 2##NM_001130689|HMGB2|3148|high mobility group box 2##NM_003864|SAP30|8819|Sin3A-associated protein, 30kDa##AF055993|SAP30|8819|Sin3A-associated protein, 30kDa##BC016757|SAP30|8819|Sin3A-associated protein, 30kDa##AJ224677|SCRG1|11341|stimulator of chondrogenesis 1##NM_007281|SCRG1|11341|stimulator of chondrogenesis 1	0.907485	denovo_WM_21:-11:0.892
chr7	30544421	30544593	reg1000624.p1	6.175	+	CU674304 TSC_hg19_v1_chr7_-_30544445 BC013937 BC005356 AK315608 BC019243 BC000625 NM_001199815 NM_001199816 NM_001199817 NM_024051	-106	-	AY128682 AY128683 AY128684 AY128685 AY128686 AF113925 BC040339 AK300367 AK023969 NM_006092	-26186	-	TSC_hg19_v1_chr7_+_30324634 AY054122	-219851	+	NM_002047	89673	+	TSC_hg19_v1_chr7_-_30634379 AK096687	89865	-	TSC_hg19_v1_chr7_+_30634447 AK074524 AK295490 BC007722 AK310351 BC000065 D30658 BC007755 AB528358 DQ892773 DQ896021 U09587	89999	+	BC013937|GGCT|79017|gamma-glutamylcyclotransferase##BC005356|GGCT|79017|gamma-glutamylcyclotransferase##AK315608|GGCT|79017|gamma-glutamylcyclotransferase##BC019243|GGCT|79017|gamma-glutamylcyclotransferase##BC000625|GGCT|79017|gamma-glutamylcyclotransferase##NM_001199815|GGCT|79017|gamma-glutamylcyclotransferase##NM_001199816|GGCT|79017|gamma-glutamylcyclotransferase##NM_001199817|GGCT|79017|gamma-glutamylcyclotransferase##NM_024051|GGCT|79017|gamma-glutamylcyclotransferase##AY128682|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AY128683|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AY128684|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AY128685|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AY128686|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AF113925|NOD1|10392|nucleotide-binding oligomerization domain containing 1##BC040339|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AK300367|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AK023969|NOD1|10392|nucleotide-binding oligomerization domain containing 1##NM_006092|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AY054122|ZNRF2|223082|zinc and ring finger 2##NM_002047|GARS|2617|glycyl-tRNA synthetase##AK096687|LOC401320|401320|uncharacterized LOC401320##AK074524|GARS|2617|glycyl-tRNA synthetase##AK295490|GARS|2617|glycyl-tRNA synthetase##BC007722|GARS|2617|glycyl-tRNA synthetase##AK310351|GARS|2617|glycyl-tRNA synthetase##BC000065|GARS|2617|glycyl-tRNA synthetase##D30658|GARS|2617|glycyl-tRNA synthetase##BC007755|GARS|2617|glycyl-tRNA synthetase##DQ892773|GARS|2617|glycyl-tRNA synthetase##DQ896021|GARS|2617|glycyl-tRNA synthetase##U09587|GARS|2617|glycyl-tRNA synthetase	2.42656	denovo_WM_21:-12:0.943	denovo_WM_21:27:0.934	denovo_WM_21:111:0.549
chr17	38443952	38444135	reg1000914.p1	6.168	+	TSC_hg19_v1_chr17_+_38375614 AK289779 AK311544 AL834239 NM_133264 BC025965 AK315836 AK055057 AK290301 BC065551 AF370396	-68429	+	NM_016339	-109802	+	TSC_hg19_v1_chr17_+_38296796 CU690706	-147247	+	AK313620 TSC_hg19_v1_chr17_+_38444130	87	+	TSC_hg19_v1_chr17_+_38444134 NM_001254 U77949	97	+	TSC_hg19_v1_chr17_+_38444176 BC025232 AF022109	171	+	AK289779|WIPF2|147179|WAS/WASL interacting protein family, member 2##AK311544|WIPF2|147179|WAS/WASL interacting protein family, member 2##AL834239|WIPF2|147179|WAS/WASL interacting protein family, member 2##NM_133264|WIPF2|147179|WAS/WASL interacting protein family, member 2##BC025965|WIPF2|147179|WAS/WASL interacting protein family, member 2##AK315836|WIPF2|147179|WAS/WASL interacting protein family, member 2##AK055057|WIPF2|147179|WAS/WASL interacting protein family, member 2##AK290301|WIPF2|147179|WAS/WASL interacting protein family, member 2##BC065551|WIPF2|147179|WAS/WASL interacting protein family, member 2##AF370396|WIPF2|147179|WAS/WASL interacting protein family, member 2##NM_016339|RAPGEFL1|51195|Rap guanine nucleotide exchange factor (GEF)-like 1##AK313620|CDC6|990|cell division cycle 6 homolog (S. cerevisiae)##NM_001254|CDC6|990|cell division cycle 6 homolog (S. cerevisiae)##U77949|CDC6|990|cell division cycle 6 homolog (S. cerevisiae)##BC025232|CDC6|990|cell division cycle 6 homolog (S. cerevisiae)##AF022109|CDC6|990|cell division cycle 6 homolog (S. cerevisiae)	1.980829	denovo_WM_21:-37:0.988	denovo_WM_21:41:0.993
chr17	46184771	46184919	reg1000710.p1	6.158	+	TSC_hg19_v1_chr17_-_46178825 U35451 BC002609 AK312615 NM_001127228	-6024	-	NM_006807 TSC_hg19_v1_chr17_-_46178605	-6262	-	BX647976 TSC_hg19_v1_chr17_+_46126143	-58704	+	AK091852 AK296095 AK316374 AK023932 NM_152244 AK296569 AF121861 NM_013323 TSC_hg19_v1_chr17_+_46185061	140	+	TSC_hg19_v1_chr17_+_46185128 BC103721 AK298551	307	+	AB590503 CU690516 Y11215 BC047870 TSC_hg19_v1_chr17_-_46507592 AK290818 NM_001075099 NM_003726	322693	-	U35451|CBX1|10951|chromobox homolog 1##BC002609|CBX1|10951|chromobox homolog 1##AK312615|CBX1|10951|chromobox homolog 1##NM_001127228|CBX1|10951|chromobox homolog 1##NM_006807|CBX1|10951|chromobox homolog 1##BX647976|NFE2L1|4779|nuclear factor (erythroid-derived 2)-like 1##AK091852|SNX11|29916|sorting nexin 11##AK296095|SNX11|29916|sorting nexin 11##AK316374|SNX11|29916|sorting nexin 11##AK023932|SNX11|29916|sorting nexin 11##NM_152244|SNX11|29916|sorting nexin 11##AK296569|SNX11|29916|sorting nexin 11##AF121861|SNX11|29916|sorting nexin 11##NM_013323|SNX11|29916|sorting nexin 11##BC103721|SNX11|29916|sorting nexin 11##AK298551|SNX11|29916|sorting nexin 11##Y11215|SKAP1|8631|src kinase associated phosphoprotein 1##BC047870|SKAP1|8631|src kinase associated phosphoprotein 1##AK290818|SKAP1|8631|src kinase associated phosphoprotein 1##NM_001075099|SKAP1|8631|src kinase associated phosphoprotein 1##NM_003726|SKAP1|8631|src kinase associated phosphoprotein 1	1.039503	denovo_WM_21:17:0.966
chr11	46867808	46867922	reg1000817.p1	6.157	+	TSC_hg19_v1_chr11_-_46867841 NM_001008938 NM_014756	-12	-	TSC_hg19_v1_chr11_-_46867830 BC111043 AK092678 AX747668 BC017856 BC070136	-53	-	TSC_hg19_v1_chr11_+_46740780 BC051332 AK222775 AK222777 AK293326 EU832664 EU832742 AB591029 V00595	-127079	+	TSC_hg19_v1_chr11_-_46940102 AB384531 AB231861 BC136667 BC136668 AB084910 NM_002334 BC110808	72197	-	TSC_hg19_v1_chr11_+_46958328 AK316318 NM_001003676 NM_001003677 NM_001003678 NM_024113 AK315639 BC001860 BC009455 AL136575 BC052291 BC013988 AK300813 AK025863 AK293609 AB528079 AM393584 AM393807 CR457351 CU679361 CU680726	90427	+	AK301785 AL834337 EU832352 EU832437 AK300347 BC036823 AK027482 TSC_hg19_v1_chr11_-_47198413 AK304541 BC030148	330534	-	NM_001008938|CKAP5|9793|cytoskeleton associated protein 5##NM_014756|CKAP5|9793|cytoskeleton associated protein 5##BC111043|CKAP5|9793|cytoskeleton associated protein 5##BC017856|CKAP5|9793|cytoskeleton associated protein 5##BC070136|CKAP5|9793|cytoskeleton associated protein 5##BC051332|F2|2147|coagulation factor II (thrombin)##AK222775|F2|2147|coagulation factor II (thrombin)##AK222777|F2|2147|coagulation factor II (thrombin)##AK293326|F2|2147|coagulation factor II (thrombin)##EU832664|F2|2147|coagulation factor II (thrombin)##EU832742|F2|2147|coagulation factor II (thrombin)##V00595|F2|2147|coagulation factor II (thrombin)##AB231861|LRP4|4038|low density lipoprotein receptor-related protein 4##BC136667|LRP4|4038|low density lipoprotein receptor-related protein 4##BC136668|LRP4|4038|low density lipoprotein receptor-related protein 4##AB084910|LRP4|4038|low density lipoprotein receptor-related protein 4##NM_002334|LRP4|4038|low density lipoprotein receptor-related protein 4##AK316318|C11orf49|79096|chromosome 11 open reading frame 49##NM_001003676|C11orf49|79096|chromosome 11 open reading frame 49##NM_001003677|C11orf49|79096|chromosome 11 open reading frame 49##NM_001003678|C11orf49|79096|chromosome 11 open reading frame 49##NM_024113|C11orf49|79096|chromosome 11 open reading frame 49##AK315639|C11orf49|79096|chromosome 11 open reading frame 49##BC001860|C11orf49|79096|chromosome 11 open reading frame 49##BC009455|C11orf49|79096|chromosome 11 open reading frame 49##AL136575|C11orf49|79096|chromosome 11 open reading frame 49##BC052291|C11orf49|79096|chromosome 11 open reading frame 49##BC013988|C11orf49|79096|chromosome 11 open reading frame 49##AK300813|C11orf49|79096|chromosome 11 open reading frame 49##AK025863|C11orf49|79096|chromosome 11 open reading frame 49##AK293609|C11orf49|79096|chromosome 11 open reading frame 49##AM393584|C11orf49|79096|chromosome 11 open reading frame 49##AM393807|C11orf49|79096|chromosome 11 open reading frame 49##CR457351|C11orf49|79096|chromosome 11 open reading frame 49##AK301785|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AL834337|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##EU832352|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##EU832437|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AK300347|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##BC036823|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AK027482|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AK304541|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##BC030148|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2	1.117571	denovo_WM_21:-7:0.306	denovo_WM_21:25:0.811
chr19	58326258	58326398	reg1000937.p1	6.157	+	AK097041 AK293445 NM_024762	-48	-	BC051325 TSC_hg19_v1_chr19_+_58281063 AK300419 BC124558 BC041660 AB527919	-45199	+	AK302151 TSC_hg19_v1_chr19_+_58281007 NM_001077426 NM_001204814 NM_017652 AK095993 BC027922 AK000077 AB074270	-45311	+	TSC_hg19_v1_chr19_+_58331098 AK095812 AK303856 U71363	4759	+	AK122919 NM_001204818 AK299091	15342	+	NM_001204817 NM_032828 TSC_hg19_v1_chr19_+_58361208	34867	+	AK097041|ZNF552|79818|zinc finger protein 552##AK293445|ZNF552|79818|zinc finger protein 552##NM_024762|ZNF552|79818|zinc finger protein 552##BC051325|ZNF586|54807|zinc finger protein 586##AK300419|ZNF586|54807|zinc finger protein 586##BC124558|ZNF586|54807|zinc finger protein 586##BC041660|ZNF586|54807|zinc finger protein 586##AK302151|ZNF586|54807|zinc finger protein 586##NM_001077426|ZNF586|54807|zinc finger protein 586##NM_001204814|ZNF586|54807|zinc finger protein 586##NM_017652|ZNF586|54807|zinc finger protein 586##AK095993|ZNF586|54807|zinc finger protein 586##BC027922|ZNF586|54807|zinc finger protein 586##AK000077|ZNF586|54807|zinc finger protein 586##AB074270|ZNF586|54807|zinc finger protein 586##U71363|LOC100293516|100293516|zinc finger protein##NM_001204818|LOC100293516|100293516|zinc finger protein##AK299091|LOC100293516|100293516|zinc finger protein##NM_001204817|ZNF587|84914|zinc finger protein 587##NM_032828|ZNF587|84914|zinc finger protein 587	0.241727	
chr7	65215910	65216035	reg1000811.p2	6.154	+	TSC_hg19_v1_chr7_-_65215912 BX647963	-54	-	TSC_hg19_v1_chr7_+_64838793 AK091618 AX747097 BC036439 M61872	-377165	+	TSC_hg19_v1_chr7_+_64838761 BX647875 NM_007139 NM_152626 BC040594	-377222	+	TSC_hg19_v1_chr7_+_65216060 BC052238 BC073761 BC122874 BC119782	111	+	TSC_hg19_v1_chr7_-_65235746 BC066990	19773	-	TSC_hg19_v1_chr7_+_65338277 BC027734 NM_173517 BX647631 AY423045	122277	+	AK091618|ZNF92|168374|zinc finger protein 92##BC036439|ZNF92|168374|zinc finger protein 92##M61872|ZNF92|168374|zinc finger protein 92##BX647875|ZNF92|168374|zinc finger protein 92##NM_007139|ZNF92|168374|zinc finger protein 92##NM_152626|ZNF92|168374|zinc finger protein 92##BC040594|ZNF92|168374|zinc finger protein 92##BC052238|CCT6P1|643253|chaperonin containing TCP1, subunit 6 (zeta) pseudogene 1##BC073761|CCT6P1|643253|chaperonin containing TCP1, subunit 6 (zeta) pseudogene 1##BC122874|CCT6P1|643253|chaperonin containing TCP1, subunit 6 (zeta) pseudogene 1##BC119782|CCT6P1|643253|chaperonin containing TCP1, subunit 6 (zeta) pseudogene 1##BC066990|LOC441242|441242|uncharacterized LOC441242##BC027734|VKORC1L1|154807|vitamin K epoxide reductase complex, subunit 1-like 1##NM_173517|VKORC1L1|154807|vitamin K epoxide reductase complex, subunit 1-like 1##BX647631|VKORC1L1|154807|vitamin K epoxide reductase complex, subunit 1-like 1##AY423045|VKORC1L1|154807|vitamin K epoxide reductase complex, subunit 1-like 1	0.819288	denovo_WM_21:-14:0.819
chr8	74884560	74884723	reg1000814.p1	6.154	+	TSC_hg19_v1_chr8_-_74884503 BC093065 AL832244 NM_001204857 NM_001204858 NM_001204859 NM_001204860 NM_001204863 NM_001204864 NM_005648	-130	-	TSC_hg19_v1_chr8_-_74884422 BC100283	-190	-	TSC_hg19_v1_chr8_-_74884389 AK057889 BX649138	-257	-	NM_001040613 NM_017866 TSC_hg19_v1_chr8_+_74888429 BC002748	3776	+	NM_001195797 NM_015364 BC020690 AF168121 AB590737 AB446498	18979	+	BX537756 BC139832 BC098299 BC098314 BC099736 BC113856 BC114464 NM_020647 BC140875 BC140876	348887	-	BC093065|TCEB1|6921|transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)##AL832244|TCEB1|6921|transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)##NM_001204857|TCEB1|6921|transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)##NM_001204858|TCEB1|6921|transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)##NM_001204859|TCEB1|6921|transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)##NM_001204860|TCEB1|6921|transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)##NM_001204863|TCEB1|6921|transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)##NM_001204864|TCEB1|6921|transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)##NM_005648|TCEB1|6921|transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)##BC100283|TCEB1|6921|transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)##AK057889|TCEB1|6921|transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)##BX649138|TCEB1|6921|transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)##NM_001040613|TMEM70|54968|transmembrane protein 70##NM_017866|TMEM70|54968|transmembrane protein 70##BC002748|TMEM70|54968|transmembrane protein 70##NM_001195797|LY96|23643|lymphocyte antigen 96##NM_015364|LY96|23643|lymphocyte antigen 96##BC020690|LY96|23643|lymphocyte antigen 96##AF168121|LY96|23643|lymphocyte antigen 96##AB446498|LY96|23643|lymphocyte antigen 96##BX537756|JPH1|56704|junctophilin 1##BC139832|JPH1|56704|junctophilin 1##BC098299|JPH1|56704|junctophilin 1##BC098314|JPH1|56704|junctophilin 1##BC099736|JPH1|56704|junctophilin 1##BC113856|JPH1|56704|junctophilin 1##BC114464|JPH1|56704|junctophilin 1##NM_020647|JPH1|56704|junctophilin 1##BC140875|JPH1|56704|junctophilin 1##BC140876|JPH1|56704|junctophilin 1	0.42353	denovo_WM_21:-42:0.424
chr12	56521752	56521936	reg1000553.p2	6.149	+	TSC_hg19_v1_chr12_+_56512049 AK027357 NM_032786 BC018708	-9835	+	NM_001035267 NM_021104 Z12962 BC102007 BC102008 BC102009 D28462 BC014383 BC070254 BC105286 BC015984 BC070252 BC070253 BC070255 BC105279 BC105296 BC105794 BC105795 BC105799 TSC_hg19_v1_chr12_+_56510418 BC017820 BC062462 BC064907 BC142666 BC142726 BC082759 BC066328 BC032611 BC070483	-11376	+	TSC_hg19_v1_chr12_+_56498422 BC011718 BC032111 BC072007 U59435 BC069786 AB464072 CU675707 DQ893446 DQ896751	-23377	+	TSC_hg19_v1_chr12_+_56522018 NM_001184796 NM_015292 AK022790	153	+	TSC_hg19_v1_chr12_+_56522044 AK128730	200	+	TSC_hg19_v1_chr12_+_56522050 AK225035 AK290337 BC004998 BC013880	213	+	AK027357|ZC3H10|84872|zinc finger CCCH-type containing 10##NM_032786|ZC3H10|84872|zinc finger CCCH-type containing 10##BC018708|ZC3H10|84872|zinc finger CCCH-type containing 10##NM_001035267|RPL41|6171|ribosomal protein L41##NM_021104|RPL41|6171|ribosomal protein L41##Z12962|RPL41|6171|ribosomal protein L41##BC102007|RPL41|6171|ribosomal protein L41##BC102008|RPL41|6171|ribosomal protein L41##BC102009|RPL41|6171|ribosomal protein L41##D28462|RPL41|6171|ribosomal protein L41##BC014383|RPL41|6171|ribosomal protein L41##BC070254|RPL41|6171|ribosomal protein L41##BC105286|RPL41|6171|ribosomal protein L41##BC015984|RPL41|6171|ribosomal protein L41##BC070252|RPL41|6171|ribosomal protein L41##BC070253|RPL41|6171|ribosomal protein L41##BC070255|RPL41|6171|ribosomal protein L41##BC105279|RPL41|6171|ribosomal protein L41##BC105296|RPL41|6171|ribosomal protein L41##BC105794|RPL41|6171|ribosomal protein L41##BC105795|RPL41|6171|ribosomal protein L41##BC105799|RPL41|6171|ribosomal protein L41##BC017820|RPL41|6171|ribosomal protein L41##BC062462|RPL41|6171|ribosomal protein L41##BC064907|RPL41|6171|ribosomal protein L41##BC142666|RPL41|6171|ribosomal protein L41##BC142726|RPL41|6171|ribosomal protein L41##BC082759|RPL41|6171|ribosomal protein L41##BC066328|RPL41|6171|ribosomal protein L41##BC032611|RPL41|6171|ribosomal protein L41##BC070483|RPL41|6171|ribosomal protein L41##BC032111|PA2G4|5036|proliferation-associated 2G4, 38kDa##BC072007|PA2G4|5036|proliferation-associated 2G4, 38kDa##U59435|PA2G4|5036|proliferation-associated 2G4, 38kDa##BC069786|PA2G4|5036|proliferation-associated 2G4, 38kDa##DQ893446|PA2G4|5036|proliferation-associated 2G4, 38kDa##DQ896751|PA2G4|5036|proliferation-associated 2G4, 38kDa##NM_001184796|ESYT1|23344|extended synaptotagmin-like protein 1##NM_015292|ESYT1|23344|extended synaptotagmin-like protein 1##AK022790|ESYT1|23344|extended synaptotagmin-like protein 1##AK128730|ESYT1|23344|extended synaptotagmin-like protein 1##AK225035|ESYT1|23344|extended synaptotagmin-like protein 1##AK290337|ESYT1|23344|extended synaptotagmin-like protein 1##BC004998|ESYT1|23344|extended synaptotagmin-like protein 1##BC013880|ESYT1|23344|extended synaptotagmin-like protein 1	0.035955	
chr19	42724359	42724476	reg1000870.p2	6.148	+	TSC_hg19_v1_chr19_-_42721830 BC027930 NM_133328 AY125488 BC013372 AK307895 AK130203 AK075328	-2578	-	M36718 X13809 BT007438 AB590941 TSC_hg19_v1_chr19_-_42636564 BC006101 M36653 NM_001207025 NM_001207026 NM_001247994 NM_002698 X53468	-87826	-	TSC_hg19_v1_chr19_+_42580336 AF447880 AK027895 BC001184	-144051	+	TSC_hg19_v1_chr19_+_42724463 AK298895 AB075831 NM_133444	47	+	AK122649 TSC_hg19_v1_chr19_+_42724498 BC013013	84	+	TSC_hg19_v1_chr19_-_42746615 DQ891014 DQ893329 DQ894195 DQ896624	22165	-	BC027930|DEDD2|162989|death effector domain containing 2##NM_133328|DEDD2|162989|death effector domain containing 2##AY125488|DEDD2|162989|death effector domain containing 2##BC013372|DEDD2|162989|death effector domain containing 2##AK307895|DEDD2|162989|death effector domain containing 2##AK130203|DEDD2|162989|death effector domain containing 2##AK075328|DEDD2|162989|death effector domain containing 2##M36718|POU2F2|5452|POU class 2 homeobox 2##X13809|POU2F2|5452|POU class 2 homeobox 2##BT007438|POU2F2|5452|POU class 2 homeobox 2##BC006101|POU2F2|5452|POU class 2 homeobox 2##M36653|POU2F2|5452|POU class 2 homeobox 2##NM_001207025|POU2F2|5452|POU class 2 homeobox 2##NM_001207026|POU2F2|5452|POU class 2 homeobox 2##NM_001247994|POU2F2|5452|POU class 2 homeobox 2##NM_002698|POU2F2|5452|POU class 2 homeobox 2##X53468|POU2F2|5452|POU class 2 homeobox 2##AF447880|ZNF574|64763|zinc finger protein 574##AK027895|ZNF574|64763|zinc finger protein 574##BC001184|ZNF574|64763|zinc finger protein 574##AK298895|ZNF526|116115|zinc finger protein 526##AB075831|ZNF526|116115|zinc finger protein 526##NM_133444|ZNF526|116115|zinc finger protein 526##AK122649|ZNF526|116115|zinc finger protein 526##BC013013|ZNF526|116115|zinc finger protein 526##DQ891014|GSK3A|2931|glycogen synthase kinase 3 alpha##DQ893329|GSK3A|2931|glycogen synthase kinase 3 alpha##DQ894195|GSK3A|2931|glycogen synthase kinase 3 alpha##DQ896624|GSK3A|2931|glycogen synthase kinase 3 alpha	1.043463	denovo_WM_21:2:0.981
chr7	74306692	74306827	reg1000819.p1	6.142	+	TSC_hg19_v1_chr7_-_74306725 BC095487	-38	-	TSC_hg19_v1_chr7_-_74306685 AK303473 AK307228 AK309007	-76	-	TSC_hg19_v1_chr7_-_74306679 BC002581	-84	-	BC052588 TSC_hg19_v1_chr7_+_74306933 BC027480 D38436 D38502 AK309660	161	+	BC147030 BC147031 NM_001145063	72321	+	AB463349 AF410455 AM392683 DQ893169 TSC_hg19_v1_chr7_-_74489627 AL136804 AK309117 BC007823 BC019008	182843	-	AK303473|STAG3L2|442582|stromal antigen 3-like 2##AK307228|STAG3L2|442582|stromal antigen 3-like 2##AK309007|STAG3L2|442582|stromal antigen 3-like 2##BC002581|STAG3L2|442582|stromal antigen 3-like 2##BC052588|PMS2P5|5383|postmeiotic segregation increased 2 pseudogene 5##BC027480|PMS2P5|5383|postmeiotic segregation increased 2 pseudogene 5##D38436|PMS2P5|5383|postmeiotic segregation increased 2 pseudogene 5##D38502|PMS2P5|5383|postmeiotic segregation increased 2 pseudogene 5##AK309660|PMS2P5|5383|postmeiotic segregation increased 2 pseudogene 5##BC147030|GATSL2|729438|GATS protein-like 2##BC147031|GATSL2|729438|GATS protein-like 2##NM_001145063|GATSL1|389523|GATS protein-like 1##AF410455|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##AM392683|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##DQ893169|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##AL136804|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##AK309117|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##BC007823|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##BC019008|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16	1.96408	denovo_WM_21:-22:0.981	denovo_WM_21:102:0.972
chr22	24316653	24316792	reg1000838.p1	6.138	+	BT006970 CU012991 CU013279 DQ891571 DQ894765 U84143 AK298326 AK292044 CR456431 BC005971 AK296189 AK304122 AK315943 BC015508 NM_001084392	-82	-	NM_001084393 AK296110 AK296189 AK298326	-7668	+	CR456929 L38503 CU013079 CU013097 CU013367 CU013385 DQ890742 AB528145 CR456500 BC071700 CR456374 BC146929 BC146936 NM_001080843 BC002415 AK312043 NM_000854 BC146940 BC146943	-13335	-	NM_001355 U49785	5296	-	BC146940 BC146943 NM_000854 AK312043 BC002415 BC146929 BC146936 BC071700 CR456374 CR456500 AB528145 CU013079 CU013097 CU013367 CU013385 DQ890742 CR456929 L38503	5596	+	TSC_hg19_v1_chr22_+_24373110 NM_001144931	56390	+	BT006970|DDT|1652|D-dopachrome tautomerase##CU012991|DDT|1652|D-dopachrome tautomerase##CU013279|DDT|1652|D-dopachrome tautomerase##DQ891571|DDT|1652|D-dopachrome tautomerase##DQ894765|DDT|1652|D-dopachrome tautomerase##U84143|DDT|1652|D-dopachrome tautomerase##AK292044|DDT|1652|D-dopachrome tautomerase##CR456431|DDT|1652|D-dopachrome tautomerase##BC005971|DDT|1652|D-dopachrome tautomerase##BC015508|DDT|1652|D-dopachrome tautomerase##NM_001084392|DDT|1652|D-dopachrome tautomerase##NM_001084393|DDTL|100037417|D-dopachrome tautomerase-like##AK296110|DDTL|100037417|D-dopachrome tautomerase-like##CR456929|GSTT2|2953|glutathione S-transferase theta 2##L38503|GSTT2|2953|glutathione S-transferase theta 2##CU013079|GSTT2|2953|glutathione S-transferase theta 2##CU013097|GSTT2|2953|glutathione S-transferase theta 2##CU013367|GSTT2|2953|glutathione S-transferase theta 2##CU013385|GSTT2|2953|glutathione S-transferase theta 2##DQ890742|GSTT2|2953|glutathione S-transferase theta 2##CR456500|GSTT2|2953|glutathione S-transferase theta 2##BC071700|GSTT2B|653689|glutathione S-transferase theta 2B (gene/pseudogene)##CR456374|GSTT2|2953|glutathione S-transferase theta 2##BC146929|GSTT2|2953|glutathione S-transferase theta 2##BC146936|GSTT2B|653689|glutathione S-transferase theta 2B (gene/pseudogene)##NM_001080843|GSTT2B|653689|glutathione S-transferase theta 2B (gene/pseudogene)##BC002415|GSTT2|2953|glutathione S-transferase theta 2##AK312043|GSTT2|2953|glutathione S-transferase theta 2##NM_000854|GSTT2|2953|glutathione S-transferase theta 2##BC146940|GSTT2|2953|glutathione S-transferase theta 2##BC146943|GSTT2|2953|glutathione S-transferase theta 2##NM_001355|DDT|1652|D-dopachrome tautomerase##U49785|DDT|1652|D-dopachrome tautomerase##BC146940|GSTT2|2953|glutathione S-transferase theta 2##BC146943|GSTT2|2953|glutathione S-transferase theta 2##NM_000854|GSTT2|2953|glutathione S-transferase theta 2##AK312043|GSTT2|2953|glutathione S-transferase theta 2##BC002415|GSTT2|2953|glutathione S-transferase theta 2##BC146929|GSTT2|2953|glutathione S-transferase theta 2##BC146936|GSTT2B|653689|glutathione S-transferase theta 2B (gene/pseudogene)##BC071700|GSTT2B|653689|glutathione S-transferase theta 2B (gene/pseudogene)##CR456374|GSTT2|2953|glutathione S-transferase theta 2##CR456500|GSTT2|2953|glutathione S-transferase theta 2##CU013079|GSTT2|2953|glutathione S-transferase theta 2##CU013097|GSTT2|2953|glutathione S-transferase theta 2##CU013367|GSTT2|2953|glutathione S-transferase theta 2##CU013385|GSTT2|2953|glutathione S-transferase theta 2##DQ890742|GSTT2|2953|glutathione S-transferase theta 2##CR456929|GSTT2|2953|glutathione S-transferase theta 2##L38503|GSTT2|2953|glutathione S-transferase theta 2##NM_001144931|LOC391322|391322|D-dopachrome tautomerase-like	1.877005	denovo_WM_21:-12:0.986	denovo_WM_21:17:0.891
chr12	49076043	49076170	reg1000529.p1	6.136	+	TSC_hg19_v1_chr12_-_49075997 AK000443 BC009746 AK094528 NM_017822	-88	-	AB590798 CR541987 CR542017 HQ258062 J00270 BC112316 BC112318 BC069103 NM_002289	-112291	-	NM_001005203	-156692	+	AF045161 EF688064 TSC_hg19_v1_chr12_-_49110514 AF048730 AK290990 NM_001240	34512	-	AK225224 NM_015270 AF250226	101787	-	TSC_hg19_v1_chr12_-_49182812 AB007882 NM_020983 BC064923	106702	-	AK000443|KANSL2|54934|KAT8 regulatory NSL complex subunit 2##BC009746|KANSL2|54934|KAT8 regulatory NSL complex subunit 2##AK094528|KANSL2|54934|KAT8 regulatory NSL complex subunit 2##NM_017822|KANSL2|54934|KAT8 regulatory NSL complex subunit 2##CR541987|LALBA|3906|lactalbumin, alpha-##CR542017|LALBA|3906|lactalbumin, alpha-##HQ258062|LALBA|3906|lactalbumin, alpha-##J00270|LALBA|3906|lactalbumin, alpha-##BC112316|LALBA|3906|lactalbumin, alpha-##BC112318|LALBA|3906|lactalbumin, alpha-##BC069103|LALBA|3906|lactalbumin, alpha-##NM_002289|LALBA|3906|lactalbumin, alpha-##NM_001005203|OR8S1|341568|olfactory receptor, family 8, subfamily S, member 1##AF045161|CCNT1|904|cyclin T1##EF688064|CCNT1|904|cyclin T1##AF048730|CCNT1|904|cyclin T1##AK290990|CCNT1|904|cyclin T1##NM_001240|CCNT1|904|cyclin T1##AK225224|ADCY6|112|adenylate cyclase 6##NM_015270|ADCY6|112|adenylate cyclase 6##AF250226|ADCY6|112|adenylate cyclase 6##AB007882|ADCY6|112|adenylate cyclase 6##NM_020983|ADCY6|112|adenylate cyclase 6##BC064923|ADCY6|112|adenylate cyclase 6	0.941805	denovo_WM_21:-30:0.761
chr3	195163878	195163989	reg1000697.p1	6.133	+	AB385269 D26069 AJ238248 TSC_hg19_v1_chr3_-_195163773 AK290369 BC060767 AK222635 NM_012287	-231	-	TSC_hg19_v1_chr3_-_194991889 BC019036 AK075551 BC039067 NM_152531	-172083	-	BC039689 AK074503 CU691744 TSC_hg19_v1_chr3_+_194407588	-756430	+	TSC_hg19_v1_chr3_-_195270150 BC007655 BC066921 NM_006241	106180	-	TSC_hg19_v1_chr3_-_195306274 BT019860 BT019861 CR456838 CR541773 CU675645 DQ892668 DQ896124	142369	-	J02611 BC007402 TSC_hg19_v1_chr3_-_195310812 AK312090 AK294523	146897	-	D26069|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##AJ238248|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##AK290369|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##BC060767|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##AK222635|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##NM_012287|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##BC019036|XXYLT1|152002|xyloside xylosyltransferase 1##AK075551|XXYLT1|152002|xyloside xylosyltransferase 1##BC039067|XXYLT1|152002|xyloside xylosyltransferase 1##NM_152531|XXYLT1|152002|xyloside xylosyltransferase 1##BC039689|FAM43A|131583|family with sequence similarity 43, member A##AK074503|FAM43A|131583|family with sequence similarity 43, member A##BC007655|PPP1R2|5504|protein phosphatase 1, regulatory (inhibitor) subunit 2##BC066921|PPP1R2|5504|protein phosphatase 1, regulatory (inhibitor) subunit 2##NM_006241|PPP1R2|5504|protein phosphatase 1, regulatory (inhibitor) subunit 2##BT019860|APOD|347|apolipoprotein D##BT019861|APOD|347|apolipoprotein D##CR456838|APOD|347|apolipoprotein D##CR541773|APOD|347|apolipoprotein D##DQ892668|APOD|347|apolipoprotein D##DQ896124|APOD|347|apolipoprotein D##J02611|APOD|347|apolipoprotein D##BC007402|APOD|347|apolipoprotein D##AK312090|APOD|347|apolipoprotein D##AK294523|APOD|347|apolipoprotein D	0.958382	denovo_WM_21:-5:0.924
chr14	24610867	24611007	reg1000616.p1	6.132	+	AY368908 TSC_hg19_v1_chr14_-_24610801 AF151870 BC002491 NM_016049	-152	-	TSC_hg19_v1_chr14_+_24605411 AK308572 AK311490 AK312211 AB590114 DQ891838 DQ895024 BT019337 CR456780 CR541658	-5505	+	TSC_hg19_v1_chr14_+_24605373 NM_006263 NM_176783 L07633 BC000352 BC007503 AK307150	-5559	+	TSC_hg19_v1_chr14_-_24615785 CR541657 CR541743 AB590155 DQ893404 DQ896722	4844	-	TSC_hg19_v1_chr14_-_24615822 AY771595 BC072025 BC004368 BC019885 AK225876 AK311569 AK026580 D45248 NM_002818	4905	-	AY256461 TSC_hg19_v1_chr14_+_24616100	5166	+	AY368908|FAM158A|51016|family with sequence similarity 158, member A##AF151870|FAM158A|51016|family with sequence similarity 158, member A##BC002491|FAM158A|51016|family with sequence similarity 158, member A##NM_016049|FAM158A|51016|family with sequence similarity 158, member A##AK311490|PSME1|5720|proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)##AK312211|PSME1|5720|proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)##DQ891838|PSME1|5720|proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)##DQ895024|PSME1|5720|proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)##BT019337|PSME1|5720|proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)##CR456780|PSME1|5720|proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)##CR541658|PSME1|5720|proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)##NM_006263|PSME1|5720|proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)##NM_176783|PSME1|5720|proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)##L07633|PSME1|5720|proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)##BC000352|PSME1|5720|proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)##BC007503|PSME1|5720|proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)##CR541657|PSME2|5721|proteasome (prosome, macropain) activator subunit 2 (PA28 beta)##CR541743|PSME2|5721|proteasome (prosome, macropain) activator subunit 2 (PA28 beta)##DQ893404|PSME2|5721|proteasome (prosome, macropain) activator subunit 2 (PA28 beta)##DQ896722|PSME2|5721|proteasome (prosome, macropain) activator subunit 2 (PA28 beta)##AY771595|PSME2|5721|proteasome (prosome, macropain) activator subunit 2 (PA28 beta)##BC072025|PSME2|5721|proteasome (prosome, macropain) activator subunit 2 (PA28 beta)##BC004368|PSME2|5721|proteasome (prosome, macropain) activator subunit 2 (PA28 beta)##BC019885|PSME2|5721|proteasome (prosome, macropain) activator subunit 2 (PA28 beta)##AK225876|PSME2|5721|proteasome (prosome, macropain) activator subunit 2 (PA28 beta)##AK311569|PSME2|5721|proteasome (prosome, macropain) activator subunit 2 (PA28 beta)##AK026580|PSME2|5721|proteasome (prosome, macropain) activator subunit 2 (PA28 beta)##D45248|PSME2|5721|proteasome (prosome, macropain) activator subunit 2 (PA28 beta)##NM_002818|PSME2|5721|proteasome (prosome, macropain) activator subunit 2 (PA28 beta)##AY256461|RNF31|55072|ring finger protein 31	1.817743	denovo_WM_21:-28:0.802	denovo_WM_21:65:0.987
chr16	1661983	1662128	reg1000700.p1	6.131	+	TSC_hg19_v1_chr16_-_1662054 NM_014714	-17	-	TSC_hg19_v1_chr16_-_1660720 AB011162 AK299035 AK299115	-1363	-	BC105785 AY358178 NM_024600	-77860	+	NM_020825	2585	+	AK309909 AK296998 NM_144570 TSC_hg19_v1_chr16_+_1728279 AK023154	66213	+	BC060853 TSC_hg19_v1_chr16_+_1728289	66231	+	NM_014714|IFT140|9742|intraflagellar transport 140 homolog (Chlamydomonas)##AB011162|IFT140|9742|intraflagellar transport 140 homolog (Chlamydomonas)##AK299035|IFT140|9742|intraflagellar transport 140 homolog (Chlamydomonas)##AK299115|IFT140|9742|intraflagellar transport 140 homolog (Chlamydomonas)##BC105785|TMEM204|79652|transmembrane protein 204##AY358178|TMEM204|79652|transmembrane protein 204##NM_024600|TMEM204|79652|transmembrane protein 204##NM_020825|CRAMP1L|57585|Crm, cramped-like (Drosophila)##AK309909|HN1L|90861|hematological and neurological expressed 1-like##AK296998|HN1L|90861|hematological and neurological expressed 1-like##NM_144570|HN1L|90861|hematological and neurological expressed 1-like##AK023154|HN1L|90861|hematological and neurological expressed 1-like##BC060853|HN1L|90861|hematological and neurological expressed 1-like	0.930471	denovo_WM_21:24:0.909
chr19	7694454	7694589	reg1000261.p1	6.124	+	TSC_hg19_v1_chr19_-_7694445 AF272147	-76	-	TSC_hg19_v1_chr19_-_7694428 CU675557 DQ893187 DQ896508 BC007208 AB026111 AF258567 AF226051 NM_020196	-118	-	CR749864 TSC_hg19_v1_chr19_-_7692280	-2279	-	TSC_hg19_v1_chr19_+_7694678 NM_001171155 BC150496 AK124717	155	+	BC038715 NM_174895 AK130855 BC025387	4080	-	AK055767 TSC_hg19_v1_chr19_-_7701853	7332	-	AF272147|XAB2|56949|XPA binding protein 2##DQ893187|XAB2|56949|XPA binding protein 2##DQ896508|XAB2|56949|XPA binding protein 2##BC007208|XAB2|56949|XPA binding protein 2##AB026111|XAB2|56949|XPA binding protein 2##AF258567|XAB2|56949|XPA binding protein 2##AF226051|XAB2|56949|XPA binding protein 2##NM_020196|XAB2|56949|XPA binding protein 2##CR749864|XAB2|56949|XPA binding protein 2##NM_001171155|C19orf79|100131801|chromosome 19 open reading frame 79##BC150496|C19orf79|100131801|chromosome 19 open reading frame 79##AK124717|C19orf79|100131801|chromosome 19 open reading frame 79##BC038715|PCP2|126006|Purkinje cell protein 2##NM_174895|PCP2|126006|Purkinje cell protein 2##AK130855|PCP2|126006|Purkinje cell protein 2##BC025387|PCP2|126006|Purkinje cell protein 2	1.286995	denovo_WM_21:-18:0.755
chr3	45883629	45883705	reg1000482.p1	6.122	+	TSC_hg19_v1_chr3_-_45883573 BC025988 AK024323 AJ297351 BC042483 NM_020347 BX640604	-72	-	TSC_hg19_v1_chr3_-_45838112 AF125107	-45519	-	BC036073 TSC_hg19_v1_chr3_-_45838029 NM_020208 NM_022405	-45637	-	NM_006641 NM_031200 AF145439 BC069678 AK312824 AK313366 AF145440 AF145207 AJ132337	44388	+	NM_006564 Y13248	101305	+	AJ292348 TSC_hg19_v1_chr3_-_46037309 AL832358 NM_024513	153654	-	BC025988|LZTFL1|54585|leucine zipper transcription factor-like 1##AK024323|LZTFL1|54585|leucine zipper transcription factor-like 1##AJ297351|LZTFL1|54585|leucine zipper transcription factor-like 1##BC042483|LZTFL1|54585|leucine zipper transcription factor-like 1##NM_020347|LZTFL1|54585|leucine zipper transcription factor-like 1##BX640604|LZTFL1|54585|leucine zipper transcription factor-like 1##AF125107|SLC6A20|54716|solute carrier family 6 (proline IMINO transporter), member 20##BC036073|SLC6A20|54716|solute carrier family 6 (proline IMINO transporter), member 20##NM_020208|SLC6A20|54716|solute carrier family 6 (proline IMINO transporter), member 20##NM_022405|SLC6A20|54716|solute carrier family 6 (proline IMINO transporter), member 20##NM_006641|CCR9|10803|chemokine (C-C motif) receptor 9##NM_031200|CCR9|10803|chemokine (C-C motif) receptor 9##AF145439|CCR9|10803|chemokine (C-C motif) receptor 9##BC069678|CCR9|10803|chemokine (C-C motif) receptor 9##AK312824|CCR9|10803|chemokine (C-C motif) receptor 9##AK313366|CCR9|10803|chemokine (C-C motif) receptor 9##AF145440|CCR9|10803|chemokine (C-C motif) receptor 9##AF145207|CCR9|10803|chemokine (C-C motif) receptor 9##AJ132337|CCR9|10803|chemokine (C-C motif) receptor 9##NM_006564|CXCR6|10663|chemokine (C-X-C motif) receptor 6##Y13248|CXCR6|10663|chemokine (C-X-C motif) receptor 6##AJ292348|FYCO1|79443|FYVE and coiled-coil domain containing 1##AL832358|FYCO1|79443|FYVE and coiled-coil domain containing 1##NM_024513|FYCO1|79443|FYVE and coiled-coil domain containing 1	0.945738	denovo_WM_21:-7:0.797
chr7	64023473	64023612	reg1000884.p1	6.121	+	TSC_hg19_v1_chr7_-_64023456 AK122937 BC030700 NM_001130022 NM_178558	-63	-	TSC_hg19_v1_chr7_-_64023450 AK094476	-95	-	AB529206 EU832109 EU832203 TSC_hg19_v1_chr7_-_64023424 AK131240	-164	-	TSC_hg19_v1_chr7_+_64126510 AK303931 BC017809 NM_001013746 NM_016220 BC047243	102985	+	TSC_hg19_v1_chr7_+_64254799 NM_001160183 NM_006524 AK294302 AK298230 AK055644 BC141847 BC037426	231273	+	AK090648 AX746558 TSC_hg19_v1_chr7_+_64342925	319360	+	AK122937|ZNF680|340252|zinc finger protein 680##BC030700|ZNF680|340252|zinc finger protein 680##NM_001130022|ZNF680|340252|zinc finger protein 680##NM_178558|ZNF680|340252|zinc finger protein 680##EU832109|ZNF680|340252|zinc finger protein 680##EU832203|ZNF680|340252|zinc finger protein 680##AK131240|ZNF680|340252|zinc finger protein 680##AK303931|ZNF107|51427|zinc finger protein 107##BC017809|ZNF107|51427|zinc finger protein 107##NM_001013746|ZNF107|51427|zinc finger protein 107##NM_016220|ZNF107|51427|zinc finger protein 107##BC047243|ZNF107|51427|zinc finger protein 107##NM_001160183|ZNF138|7697|zinc finger protein 138##NM_006524|ZNF138|7697|zinc finger protein 138##AK294302|ZNF138|7697|zinc finger protein 138##AK298230|ZNF138|7697|zinc finger protein 138##AK055644|ZNF138|7697|zinc finger protein 138##BC141847|ZNF138|7697|zinc finger protein 138##BC037426|ZNF138|7697|zinc finger protein 138##AK090648|ZNF273|10793|zinc finger protein 273	0.858649	denovo_WM_21:-9:0.848
chr1	38156222	38156359	reg1000796.p1	6.117	+	TSC_hg19_v1_chr1_-_38156198 AK316093 AK299377 BC063843 AK000515 NM_017850	-109	-	TSC_hg19_v1_chr1_-_38100578 NM_001038633 NM_001242908 NM_001242909 NM_001242910	-55683	-	DQ318235 AK098225 DQ165084 DQ165085 TSC_hg19_v1_chr1_-_38100359	-55967	-	TSC_hg19_v1_chr1_+_38158167 AK001330 AK222549 AY508815 BC001651 NM_018101 AK022104	1858	+	BC000703 TSC_hg19_v1_chr1_+_38158187	1891	+	TSC_hg19_v1_chr1_+_38158195 AK222568 BC016944 AK291917 BC008079 AK022606 AB463480 CU677773	1985	+	AK316093|C1orf109|54955|chromosome 1 open reading frame 109##AK299377|C1orf109|54955|chromosome 1 open reading frame 109##BC063843|C1orf109|54955|chromosome 1 open reading frame 109##AK000515|C1orf109|54955|chromosome 1 open reading frame 109##NM_017850|C1orf109|54955|chromosome 1 open reading frame 109##NM_001038633|RSPO1|284654|R-spondin 1##NM_001242908|RSPO1|284654|R-spondin 1##NM_001242909|RSPO1|284654|R-spondin 1##NM_001242910|RSPO1|284654|R-spondin 1##DQ318235|RSPO1|284654|R-spondin 1##AK098225|RSPO1|284654|R-spondin 1##DQ165084|RSPO1|284654|R-spondin 1##DQ165085|RSPO1|284654|R-spondin 1##AK001330|CDCA8|55143|cell division cycle associated 8##AK222549|CDCA8|55143|cell division cycle associated 8##AY508815|CDCA8|55143|cell division cycle associated 8##BC001651|CDCA8|55143|cell division cycle associated 8##NM_018101|CDCA8|55143|cell division cycle associated 8##AK022104|CDCA8|55143|cell division cycle associated 8##BC000703|CDCA8|55143|cell division cycle associated 8##AK222568|CDCA8|55143|cell division cycle associated 8##BC016944|CDCA8|55143|cell division cycle associated 8##AK291917|CDCA8|55143|cell division cycle associated 8##BC008079|CDCA8|55143|cell division cycle associated 8##AK022606|CDCA8|55143|cell division cycle associated 8	0.108475	
chr11	560849	560952	reg1000759.p2	6.111	+	TSC_hg19_v1_chr11_-_560721 BC039077 NM_173573	-158	-	NM_198075 TSC_hg19_v1_chr11_+_537526 BC035936 BC035937	-23374	+	TSC_hg19_v1_chr11_-_535567 BC006499 NM_001130442 NM_005343 NM_176795	-25337	-	TSC_hg19_v1_chr11_+_560986 NM_001143993	76	+	BC106921 BC106922 M91083 NM_001143994 NM_003475	549	+	AK123483 TSC_hg19_v1_chr11_-_568468	7544	-	BC039077|C11orf35|256329|chromosome 11 open reading frame 35##NM_173573|C11orf35|256329|chromosome 11 open reading frame 35##NM_198075|LRRC56|115399|leucine rich repeat containing 56##BC035936|LRRC56|115399|leucine rich repeat containing 56##BC035937|LRRC56|115399|leucine rich repeat containing 56##BC006499|HRAS|3265|v-Ha-ras Harvey rat sarcoma viral oncogene homolog##NM_001130442|HRAS|3265|v-Ha-ras Harvey rat sarcoma viral oncogene homolog##NM_005343|HRAS|3265|v-Ha-ras Harvey rat sarcoma viral oncogene homolog##NM_176795|HRAS|3265|v-Ha-ras Harvey rat sarcoma viral oncogene homolog##NM_001143993|RASSF7|8045|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7##BC106921|RASSF7|8045|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7##BC106922|RASSF7|8045|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7##M91083|RASSF7|8045|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7##NM_001143994|RASSF7|8045|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7##NM_003475|RASSF7|8045|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7##AK123483|MIR210HG|100506211|MIR210 host gene (non-protein coding)	2.330322	denovo_WM_21:5:0.796	denovo_WM_21:-36:0.858	denovo_WM_21:44:0.677
chr16	79804536	79804680	reg1000707.p1	6.111	+	AF055376 AF055377 BC038438 NM_001031804 NM_005360	-169993	-	TSC_hg19_v1_chr16_+_78133580 NM_016373 NM_130791 NM_130844 AK298322 AF211943 AF395123 AF395124 AK027626 AK291300 AK290438 AF227527 AF227529 AF227528 AF227526 BC003184 AF187015 AY256821 AB590073 BT007445	-1671153	+	NM_001244755	-1741623	+	AF125108 NM_130897 BC054892 BC035232	770280	+	TSC_hg19_v1_chr16_-_80837998 AX781671 AX781675 AB590934 CU686816 BC100803 BC100804 BC100805 BC100806 BC069440 AX781670 AK096185 NM_152342 AY273798	1033439	-	TSC_hg19_v1_chr16_+_81040102 AK023669 NM_001100624 NM_001100625 NM_018455	1235476	+	AF055376|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AF055377|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##BC038438|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_001031804|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_005360|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_016373|WWOX|51741|WW domain containing oxidoreductase##NM_130791|WWOX|51741|WW domain containing oxidoreductase##NM_130844|WWOX|51741|WW domain containing oxidoreductase##AK298322|WWOX|51741|WW domain containing oxidoreductase##AF211943|WWOX|51741|WW domain containing oxidoreductase##AF395123|WWOX|51741|WW domain containing oxidoreductase##AF395124|WWOX|51741|WW domain containing oxidoreductase##AK027626|WWOX|51741|WW domain containing oxidoreductase##AK291300|WWOX|51741|WW domain containing oxidoreductase##AK290438|WWOX|51741|WW domain containing oxidoreductase##AF227527|WWOX|51741|WW domain containing oxidoreductase##AF227529|WWOX|51741|WW domain containing oxidoreductase##AF227528|WWOX|51741|WW domain containing oxidoreductase##AF227526|WWOX|51741|WW domain containing oxidoreductase##BC003184|WWOX|51741|WW domain containing oxidoreductase##AF187015|WWOX|51741|WW domain containing oxidoreductase##AY256821|WWOX|51741|WW domain containing oxidoreductase##BT007445|WWOX|51741|WW domain containing oxidoreductase##NM_001244755|CLEC3A|10143|C-type lectin domain family 3, member A##AF125108|DYNLRB2|83657|dynein, light chain, roadblock-type 2##NM_130897|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC054892|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC035232|DYNLRB2|83657|dynein, light chain, roadblock-type 2##AX781671|CDYL2|124359|chromodomain protein, Y-like 2##BC100803|CDYL2|124359|chromodomain protein, Y-like 2##BC100804|CDYL2|124359|chromodomain protein, Y-like 2##BC100805|CDYL2|124359|chromodomain protein, Y-like 2##BC100806|CDYL2|124359|chromodomain protein, Y-like 2##BC069440|CDYL2|124359|chromodomain protein, Y-like 2##AX781670|CDYL2|124359|chromodomain protein, Y-like 2##AK096185|CDYL2|124359|chromodomain protein, Y-like 2##NM_152342|CDYL2|124359|chromodomain protein, Y-like 2##AY273798|CDYL2|124359|chromodomain protein, Y-like 2##AK023669|CENPN|55839|centromere protein N##NM_001100624|CENPN|55839|centromere protein N##NM_001100625|CENPN|55839|centromere protein N##NM_018455|CENPN|55839|centromere protein N	0.916784	denovo_WM_21:32:0.917
chr7	44836143	44836236	reg1000577.p1	6.106	+	NM_174929 BC131780 BC016968 AY426594 AF357908	-40372	+	TSC_hg19_v1_chr7_+_44788465 AK090415 NM_031449	-47698	+	TSC_hg19_v1_chr7_+_44788175 BC110435	-48007	+	TSC_hg19_v1_chr7_+_44836244 BC137057 BC137058 NM_021130	28	+	TSC_hg19_v1_chr7_+_44836279 AK290851 BC005982 AK130101 AK293003 BC007104 BC013915 AK026569 AK297340 AK316564 BC093076 AK290085 BC005320 D28351 BC106030 BC073992 BC003026 BC000689	98	+	Y00052 TSC_hg19_v1_chr7_+_44836309 AB464007 DQ892625 DQ895865 CU674338 AB451307 AB451438 CR456707	127	+	NM_174929|ZMIZ2|83637|zinc finger, MIZ-type containing 2##BC131780|ZMIZ2|83637|zinc finger, MIZ-type containing 2##BC016968|ZMIZ2|83637|zinc finger, MIZ-type containing 2##AY426594|ZMIZ2|83637|zinc finger, MIZ-type containing 2##AF357908|ZMIZ2|83637|zinc finger, MIZ-type containing 2##AK090415|ZMIZ2|83637|zinc finger, MIZ-type containing 2##NM_031449|ZMIZ2|83637|zinc finger, MIZ-type containing 2##BC110435|ZMIZ2|83637|zinc finger, MIZ-type containing 2##BC137057|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##BC137058|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##NM_021130|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##AK290851|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##BC005982|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##AK130101|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##AK293003|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##BC007104|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##BC013915|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##AK026569|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##AK297340|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##AK316564|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##BC093076|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##AK290085|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##BC005320|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##D28351|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##BC106030|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##BC073992|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##BC003026|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##BC000689|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##Y00052|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##DQ892625|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##DQ895865|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##AB451307|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##AB451438|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##CR456707|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)	0.249496	denovo_WM_21:9:0.249
chr1	44116032	44116129	reg1000607.p2	6.105	+	BC002558 TSC_hg19_v1_chr1_+_44115828 AB014577	-236	+	AK300039 TSC_hg19_v1_chr1_+_44115819	-269	+	TSC_hg19_v1_chr1_+_44115796 NM_014663	-281	+	TSC_hg19_v1_chr1_-_44173037 BC094867	56943	-	AK301829 AY051143 NM_006279 NM_174963 NM_174964 NM_174965 NM_174966 NM_174967 NM_174968 NM_174969 NM_174970 NM_174971 TSC_hg19_v1_chr1_+_44173217 BC050380	57138	+	AF120274 NM_001136215 NM_057090 NM_057091	282911	+	BC002558|KDM4A|9682|lysine (K)-specific demethylase 4A##AB014577|KDM4A|9682|lysine (K)-specific demethylase 4A##AK300039|KDM4A|9682|lysine (K)-specific demethylase 4A##NM_014663|KDM4A|9682|lysine (K)-specific demethylase 4A##BC094867|LOC100132774|100132774|uncharacterized LOC100132774##AK301829|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##AY051143|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_006279|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174963|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174964|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174965|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174966|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174967|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174968|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174969|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174970|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174971|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##BC050380|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##AF120274|ARTN|9048|artemin##NM_001136215|ARTN|9048|artemin##NM_057090|ARTN|9048|artemin##NM_057091|ARTN|9048|artemin	0.960097	denovo_WM_21:-27:0.942
chr11	118992175	118992323	reg1000820.p1	6.098	+	TSC_hg19_v1_chr11_+_118978191 BC022219	-14066	+	TSC_hg19_v1_chr11_+_118978097 AB094094 AK025223 NM_014807	-14122	+	NM_001382 AK095718	-19432	-	NM_001243259 NM_015517 NM_198971 TSC_hg19_v1_chr11_+_118992297 AK300288 BC017234 AK056362 BC012856 AK301452	34	+	BC041091 NM_022169 AK290035	27531	+	AK289830 NM_001142505	28049	+	BC022219|C2CD2L|9854|C2CD2-like##AB094094|C2CD2L|9854|C2CD2-like##AK025223|C2CD2L|9854|C2CD2-like##NM_014807|C2CD2L|9854|C2CD2-like##NM_001382|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##AK095718|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##NM_001243259|HINFP|25988|histone H4 transcription factor##NM_015517|HINFP|25988|histone H4 transcription factor##NM_198971|HINFP|25988|histone H4 transcription factor##AK300288|HINFP|25988|histone H4 transcription factor##BC017234|HINFP|25988|histone H4 transcription factor##AK056362|HINFP|25988|histone H4 transcription factor##BC012856|HINFP|25988|histone H4 transcription factor##AK301452|HINFP|25988|histone H4 transcription factor##BC041091|ABCG4|64137|ATP-binding cassette, sub-family G (WHITE), member 4##NM_022169|ABCG4|64137|ATP-binding cassette, sub-family G (WHITE), member 4##AK290035|ABCG4|64137|ATP-binding cassette, sub-family G (WHITE), member 4##AK289830|ABCG4|64137|ATP-binding cassette, sub-family G (WHITE), member 4##NM_001142505|ABCG4|64137|ATP-binding cassette, sub-family G (WHITE), member 4	0.567927	denovo_WM_21:-15:0.390
chr11	102118520	102118591	reg1000521.p1	6.097	+	NM_001195045 AK316116	-135348	+	TSC_hg19_v1_chr11_+_101981177 AK300414 NM_001130145 NM_001195044 NM_006106 BC038235 AB528588 AB567720 AB567721 AY316529	-137353	+	NM_001195005 NM_032930 AK094851 BC054869 TSC_hg19_v1_chr11_+_101918188 BC006128	-200372	+	NM_001165 NM_182962 TSC_hg19_v1_chr11_+_102188214 AF070674	69647	+	TSC_hg19_v1_chr11_+_102217944 AK303197	99374	+	TSC_hg19_v1_chr11_+_102217954 BX647978 NM_001166 AF207599 BC028578	99473	+	NM_001195045|YAP1|10413|Yes-associated protein 1##AK316116|YAP1|10413|Yes-associated protein 1##AK300414|YAP1|10413|Yes-associated protein 1##NM_001130145|YAP1|10413|Yes-associated protein 1##NM_001195044|YAP1|10413|Yes-associated protein 1##NM_006106|YAP1|10413|Yes-associated protein 1##BC038235|YAP1|10413|Yes-associated protein 1##AB567720|YAP1|10413|Yes-associated protein 1##AB567721|YAP1|10413|Yes-associated protein 1##AY316529|YAP1|10413|Yes-associated protein 1##NM_001195005|C11orf70|85016|chromosome 11 open reading frame 70##NM_032930|C11orf70|85016|chromosome 11 open reading frame 70##AK094851|C11orf70|85016|chromosome 11 open reading frame 70##BC054869|C11orf70|85016|chromosome 11 open reading frame 70##BC006128|C11orf70|85016|chromosome 11 open reading frame 70##NM_001165|BIRC3|330|baculoviral IAP repeat containing 3##NM_182962|BIRC3|330|baculoviral IAP repeat containing 3##AF070674|BIRC3|330|baculoviral IAP repeat containing 3##AK303197|BIRC2|329|baculoviral IAP repeat containing 2##BX647978|BIRC2|329|baculoviral IAP repeat containing 2##NM_001166|BIRC2|329|baculoviral IAP repeat containing 2##BC028578|BIRC2|329|baculoviral IAP repeat containing 2	0.0	
chr7	154720033	154720168	reg1000846.p1	6.091	+	AK309760 AK308993 AK293582 NM_001936 TSC_hg19_v1_chr7_+_154002377 M96860 AK294483 AB384749	-717715	+	TSC_hg19_v1_chr7_+_153749746 M96859 NM_130797	-970342	+	TSC_hg19_v1_chr7_+_153584383 BX647966 NM_001039350	-1135700	+	TSC_hg19_v1_chr7_+_154720213 BC033053 AK311721 AK056609 BC050402	97	+	TSC_hg19_v1_chr7_-_154794664 AK293744 AK123600 NM_007349 AK307417	74570	-	TSC_hg19_v1_chr7_+_154795161 BC035068 BC048116 AL713756	75111	+	AK309760|DPP6|1804|dipeptidyl-peptidase 6##AK308993|DPP6|1804|dipeptidyl-peptidase 6##AK293582|DPP6|1804|dipeptidyl-peptidase 6##NM_001936|DPP6|1804|dipeptidyl-peptidase 6##M96860|DPP6|1804|dipeptidyl-peptidase 6##AK294483|DPP6|1804|dipeptidyl-peptidase 6##M96859|DPP6|1804|dipeptidyl-peptidase 6##NM_130797|DPP6|1804|dipeptidyl-peptidase 6##BX647966|DPP6|1804|dipeptidyl-peptidase 6##NM_001039350|DPP6|1804|dipeptidyl-peptidase 6##BC033053|LOC100132707|100132707|uncharacterized LOC100132707##AK311721|LOC100132707|100132707|uncharacterized LOC100132707##AK056609|LOC100132707|100132707|uncharacterized LOC100132707##BC050402|LOC100132707|100132707|uncharacterized LOC100132707##AK293744|PAXIP1|22976|PAX interacting (with transcription-activation domain) protein 1##AK123600|PAXIP1|22976|PAX interacting (with transcription-activation domain) protein 1##NM_007349|PAXIP1|22976|PAX interacting (with transcription-activation domain) protein 1##AK307417|PAXIP1|22976|PAX interacting (with transcription-activation domain) protein 1##BC035068|LOC202781|202781|uncharacterized LOC202781##BC048116|LOC202781|202781|uncharacterized LOC202781##AL713756|LOC202781|202781|uncharacterized LOC202781	1.880251	denovo_WM_21:9:0.922	denovo_WM_21:-31:0.922
chr16	15982455	15982622	reg1000956.p1	6.085	+	AL832498 TSC_hg19_v1_chr16_-_15982471	-53	-	AK055715 NM_144600 TSC_hg19_v1_chr16_-_15982448 BC022321 AK056798 AY507846	-85	-	BC101677 BC104906 BC143364 AB020673 AY520816 AY520817 TSC_hg19_v1_chr16_-_15950886 AK308389 BC031040 EU489063 NM_001040113 NM_001040114 NM_002474 NM_022844	-31669	-	TSC_hg19_v1_chr16_+_16043442 L05628 NM_004996 NM_019862 NM_019898 NM_019899 NM_019900 X78338	60826	+	TSC_hg19_v1_chr16_+_16146613 HQ917065	164080	+	AF168791 AM711638 AM774324 BC050733 AF076622 BC131732 U66689 NM_001079528 NM_001171 AY078405 AK298295	334782	-	AL832498|FOPNL|123811|FGFR1OP N-terminal like##AK055715|FOPNL|123811|FGFR1OP N-terminal like##NM_144600|FOPNL|123811|FGFR1OP N-terminal like##BC022321|FOPNL|123811|FGFR1OP N-terminal like##AK056798|FOPNL|123811|FGFR1OP N-terminal like##AY507846|FOPNL|123811|FGFR1OP N-terminal like##BC101677|MYH11|4629|myosin, heavy chain 11, smooth muscle##BC104906|MYH11|4629|myosin, heavy chain 11, smooth muscle##BC143364|MYH11|4629|myosin, heavy chain 11, smooth muscle##AB020673|MYH11|4629|myosin, heavy chain 11, smooth muscle##AY520816|MYH11|4629|myosin, heavy chain 11, smooth muscle##AY520817|MYH11|4629|myosin, heavy chain 11, smooth muscle##AK308389|MYH11|4629|myosin, heavy chain 11, smooth muscle##BC031040|MYH11|4629|myosin, heavy chain 11, smooth muscle##EU489063|MYH11|4629|myosin, heavy chain 11, smooth muscle##NM_001040113|MYH11|4629|myosin, heavy chain 11, smooth muscle##NM_001040114|MYH11|4629|myosin, heavy chain 11, smooth muscle##NM_002474|MYH11|4629|myosin, heavy chain 11, smooth muscle##NM_022844|MYH11|4629|myosin, heavy chain 11, smooth muscle##L05628|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_004996|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019862|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019898|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019899|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019900|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##X78338|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##AF168791|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AM711638|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AM774324|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##BC050733|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AF076622|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##BC131732|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##NM_001079528|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##NM_001171|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AY078405|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AK298295|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6	1.123315	denovo_WM_21:-11:0.849	denovo_WM_21:84:0.274
chr19	11485222	11485362	reg1000442.p1	6.080	+	AK094869 TSC_hg19_v1_chr19_+_11466173 BC009378	-19097	+	NM_001170635 NM_022737 TSC_hg19_v1_chr19_+_11466107 AK023117 AY304516 AK225482	-19177	+	TSC_hg19_v1_chr19_+_11457247 AK293611 BC038439	-28006	+	BC068071 AK092438 AX747546 NM_175871 BC119677	81	+	M34986 AB527807 BC112153 BC143697 BC143698 BC143700 AK315097 M60459 BC019092 NM_000121	9657	-	AK074082 TSC_hg19_v1_chr19_-_11529991 BC064475 AK057147 AK293404 AK298281 BC101756 BC111958 BC143530 BC014426 NM_001035223 NM_001161616	44696	-	AK094869|LPPR2|64748|lipid phosphate phosphatase-related protein type 2##BC009378|LPPR2|64748|lipid phosphate phosphatase-related protein type 2##NM_001170635|LPPR2|64748|lipid phosphate phosphatase-related protein type 2##NM_022737|LPPR2|64748|lipid phosphate phosphatase-related protein type 2##AK023117|LPPR2|64748|lipid phosphate phosphatase-related protein type 2##AY304516|LPPR2|64748|lipid phosphate phosphatase-related protein type 2##AK225482|LPPR2|64748|lipid phosphate phosphatase-related protein type 2##AK293611|CCDC159|126075|coiled-coil domain containing 159##BC038439|CCDC159|126075|coiled-coil domain containing 159##BC068071|SWSAP1|126074|SWIM-type zinc finger 7 associated protein 1##AK092438|SWSAP1|126074|SWIM-type zinc finger 7 associated protein 1##NM_175871|SWSAP1|126074|SWIM-type zinc finger 7 associated protein 1##BC119677|SWSAP1|126074|SWIM-type zinc finger 7 associated protein 1##M34986|EPOR|2057|erythropoietin receptor##BC112153|EPOR|2057|erythropoietin receptor##BC143697|EPOR|2057|erythropoietin receptor##BC143698|EPOR|2057|erythropoietin receptor##BC143700|EPOR|2057|erythropoietin receptor##AK315097|EPOR|2057|erythropoietin receptor##M60459|EPOR|2057|erythropoietin receptor##BC019092|EPOR|2057|erythropoietin receptor##NM_000121|EPOR|2057|erythropoietin receptor##BC064475|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##AK057147|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##AK293404|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##AK298281|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##BC101756|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##BC111958|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##BC143530|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##BC014426|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##NM_001035223|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##NM_001161616|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3	0.651487	denovo_WM_21:44:0.495
chr17	43138892	43139015	reg1000501.p2	6.077	+	TSC_hg19_v1_chr17_+_43138687 BC006538 BC006569 NM_021079 AF043324 AK291936 AK303517 AB527516 BC008579 AF020500	-261	+	TSC_hg19_v1_chr17_+_43138673 Y17208 Y17209	-296	+	TSC_hg19_v1_chr17_-_43138397 BC006472 BC006546 NM_024819	-541	-	AB075844 AL834392 AB384653 TSC_hg19_v1_chr17_-_43209885 BC072384 AK074240 NM_133373	70862	-	NM_001135704 TSC_hg19_v1_chr17_+_43209980 BC041143	71029	+	AK316359 NM_001135705 NM_001135706 NM_001135707 NM_024722 BC022000 AK296167 TSC_hg19_v1_chr17_+_43213056 AK023384 AK075104 BC029164 AB073387	74104	+	BC006538|NMT1|4836|N-myristoyltransferase 1##BC006569|NMT1|4836|N-myristoyltransferase 1##NM_021079|NMT1|4836|N-myristoyltransferase 1##AF043324|NMT1|4836|N-myristoyltransferase 1##AK291936|NMT1|4836|N-myristoyltransferase 1##AK303517|NMT1|4836|N-myristoyltransferase 1##BC008579|NMT1|4836|N-myristoyltransferase 1##AF020500|NMT1|4836|N-myristoyltransferase 1##Y17208|NMT1|4836|N-myristoyltransferase 1##Y17209|NMT1|4836|N-myristoyltransferase 1##BC006472|DCAKD|79877|dephospho-CoA kinase domain containing##BC006546|DCAKD|79877|dephospho-CoA kinase domain containing##NM_024819|DCAKD|79877|dephospho-CoA kinase domain containing##AB075844|PLCD3|113026|phospholipase C, delta 3##AL834392|PLCD3|113026|phospholipase C, delta 3##BC072384|PLCD3|113026|phospholipase C, delta 3##AK074240|PLCD3|113026|phospholipase C, delta 3##NM_133373|PLCD3|113026|phospholipase C, delta 3##NM_001135704|ACBD4|79777|acyl-CoA binding domain containing 4##BC041143|ACBD4|79777|acyl-CoA binding domain containing 4##AK316359|ACBD4|79777|acyl-CoA binding domain containing 4##NM_001135705|ACBD4|79777|acyl-CoA binding domain containing 4##NM_001135706|ACBD4|79777|acyl-CoA binding domain containing 4##NM_001135707|ACBD4|79777|acyl-CoA binding domain containing 4##NM_024722|ACBD4|79777|acyl-CoA binding domain containing 4##BC022000|ACBD4|79777|acyl-CoA binding domain containing 4##AK296167|ACBD4|79777|acyl-CoA binding domain containing 4##AK023384|ACBD4|79777|acyl-CoA binding domain containing 4##AK075104|ACBD4|79777|acyl-CoA binding domain containing 4##BC029164|ACBD4|79777|acyl-CoA binding domain containing 4##AB073387|ACBD4|79777|acyl-CoA binding domain containing 4	1.424394	denovo_WM_21:14:0.439	denovo_WM_21:-16:0.985
chr13	47167641	47167791	reg1000822.p1	6.074	+	TSC_hg19_v1_chr13_+_47127518 AB385418 HQ258591	-40209	+	BC112937 BC117472 BC143883 TSC_hg19_v1_chr13_+_47127418	-40296	+	TSC_hg19_v1_chr13_+_47127313 AK292898 AB023233	-40393	+	TSC_hg19_v1_chr13_-_47371297 BC001169 D28416 AK098540 AF112219 NM_001984	203599	-	AK314132 BX647777 AK302787 NM_000621 NM_001165947	303351	-	TSC_hg19_v1_chr13_-_48575410 AB529139 BC027587 AK302311 AK315513 AK001458 AK316041 BX640602 AF087890 AK001847 AK225452 AB035863 NM_003850	1407735	-	HQ258591|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC112937|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC117472|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC143883|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AK292898|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AB023233|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC001169|ESD|2098|esterase D##D28416|ESD|2098|esterase D##AK098540|ESD|2098|esterase D##AF112219|ESD|2098|esterase D##NM_001984|ESD|2098|esterase D##AK314132|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BX647777|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##AK302787|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_000621|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_001165947|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BC027587|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK302311|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK315513|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001458|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK316041|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##BX640602|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AF087890|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001847|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK225452|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AB035863|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##NM_003850|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit	0.045748	
chr16	30583396	30583509	reg1000703.p1	6.064	+	EU446577 TSC_hg19_v1_chr16_-_30583034 BC018997	-430	-	EU446557 BC008821 AK093992 AX748400 NM_001172679 NM_033410 TSC_hg19_v1_chr16_-_30569709	-13844	-	TSC_hg19_v1_chr16_-_30546234 AB209546 AK299308 AK054567 BC001361 NM_023931 AK316254	-37262	-	NM_001024683 NM_145271	275	-	TSC_hg19_v1_chr16_-_30597103 AK309511 EU446576 AK292465 BC040642 AK298848 AK056692 NM_152458	13523	-	AK310459 AB065282 BC014000 NM_138447 TSC_hg19_v1_chr16_-_30621684	38204	-	EU446577|ZNF688|146542|zinc finger protein 688##BC018997|ZNF688|146542|zinc finger protein 688##EU446557|ZNF764|92595|zinc finger protein 764##BC008821|ZNF764|92595|zinc finger protein 764##AK093992|ZNF764|92595|zinc finger protein 764##NM_001172679|ZNF764|92595|zinc finger protein 764##NM_033410|ZNF764|92595|zinc finger protein 764##AB209546|ZNF747|65988|zinc finger protein 747##AK054567|ZNF747|65988|zinc finger protein 747##BC001361|ZNF747|65988|zinc finger protein 747##NM_023931|ZNF747|65988|zinc finger protein 747##NM_001024683|ZNF688|146542|zinc finger protein 688##NM_145271|ZNF688|146542|zinc finger protein 688##AK309511|ZNF785|146540|zinc finger protein 785##EU446576|ZNF785|146540|zinc finger protein 785##AK292465|ZNF785|146540|zinc finger protein 785##BC040642|ZNF785|146540|zinc finger protein 785##AK298848|ZNF785|146540|zinc finger protein 785##AK056692|ZNF785|146540|zinc finger protein 785##NM_152458|ZNF785|146540|zinc finger protein 785##AK310459|ZNF689|115509|zinc finger protein 689##AB065282|ZNF689|115509|zinc finger protein 689##BC014000|ZNF689|115509|zinc finger protein 689##NM_138447|ZNF689|115509|zinc finger protein 689	0.645139	denovo_WM_21:56:0.634
chr19	46273952	46274101	reg1000919.p2	6.062	+	NM_175875	-1530	-	AB464211 TSC_hg19_v1_chr19_-_46272110	-1911	-	TSC_hg19_v1_chr19_-_46234155 NM_001080469	-39879	-	TSC_hg19_v1_chr19_-_46283281 AB384925	9272	-	AK304749 M87312 NM_001081563	9785	-	S72883 TSC_hg19_v1_chr19_-_46285728 BC062553 L19268	11666	-	NM_175875|SIX5|147912|SIX homeobox 5##NM_001080469|FBXO46|23403|F-box protein 46##AK304749|DMPK|1760|dystrophia myotonica-protein kinase##M87312|DMPK|1760|dystrophia myotonica-protein kinase##NM_001081563|DMPK|1760|dystrophia myotonica-protein kinase##S72883|DMPK|1760|dystrophia myotonica-protein kinase##BC062553|DMPK|1760|dystrophia myotonica-protein kinase##L19268|DMPK|1760|dystrophia myotonica-protein kinase	2.312092	denovo_WM_21:47:0.510	denovo_WM_21:75:0.808	denovo_WM_21:-84:0.994
chr1	109969095	109969211	reg1000680.p1	6.049	+	AK225990 TSC_hg19_v1_chr1_-_109969071 AK304448 AK313351 NM_001199772 NM_002790 NM_001199773 NM_001199774	-71	-	BC103751 TSC_hg19_v1_chr1_-_109969048	-104	-	BT019717 CR456847 AB528717 X61970 BC102018 BC102019 BC102020 TSC_hg19_v1_chr1_-_109969040	-157	-	AK131459 NM_001040709 AK289513 AK302566 TSC_hg19_v1_chr1_+_110009189	39992	+	TSC_hg19_v1_chr1_+_110009222 AK293082	40068	+	TSC_hg19_v1_chr1_+_110026580 BC036849 NM_153340	57393	+	AK225990|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##AK304448|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##AK313351|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##NM_001199772|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##NM_002790|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##NM_001199773|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##NM_001199774|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##BC103751|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##BT019717|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##CR456847|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##X61970|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##BC102018|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##BC102019|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##BC102020|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##AK131459|SYPL2|284612|synaptophysin-like 2##NM_001040709|SYPL2|284612|synaptophysin-like 2##AK289513|SYPL2|284612|synaptophysin-like 2##AK302566|SYPL2|284612|synaptophysin-like 2##AK293082|SYPL2|284612|synaptophysin-like 2##BC036849|ATXN7L2|127002|ataxin 7-like 2##NM_153340|ATXN7L2|127002|ataxin 7-like 2	0.965256	denovo_WM_21:-31:0.965
chr8	103425021	103425205	reg1000862.p1	6.038	+	TSC_hg19_v1_chr8_-_103424923 AB020703 BC151231 NM_015902	-202	-	AK304354 CR627376 NM_001172477 AB163437 AB163438 AB166669 AB166670 AB166671 EU831630 EU831715 HQ258190 AB527865 AK001965 TSC_hg19_v1_chr8_-_103251168 AL137348 BC108261 BC042948 BC117496 BC130628 AB036063 NM_001172478 NM_015713	-173940	-	NM_001040630	-287979	-	NM_024410 AK315276 BC104456 BC104457	138748	+	BC011538 NM_001032282 S81439	240979	-	TSC_hg19_v1_chr8_-_103667952 AK312894 U21847 BC095399 NM_005655	242819	-	AB020703|UBR5|51366|ubiquitin protein ligase E3 component n-recognin 5##BC151231|UBR5|51366|ubiquitin protein ligase E3 component n-recognin 5##NM_015902|UBR5|51366|ubiquitin protein ligase E3 component n-recognin 5##AK304354|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##CR627376|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172477|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163437|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163438|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166669|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166670|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166671|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831630|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831715|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##HQ258190|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AK001965|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AL137348|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC108261|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC042948|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC117496|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC130628|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB036063|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172478|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_015713|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001040630|NCALD|83988|neurocalcin delta##NM_024410|ODF1|4956|outer dense fiber of sperm tails 1##AK315276|ODF1|4956|outer dense fiber of sperm tails 1##BC104456|ODF1|4956|outer dense fiber of sperm tails 1##BC104457|ODF1|4956|outer dense fiber of sperm tails 1##BC011538|KLF10|7071|Kruppel-like factor 10##NM_001032282|KLF10|7071|Kruppel-like factor 10##S81439|KLF10|7071|Kruppel-like factor 10##AK312894|KLF10|7071|Kruppel-like factor 10##U21847|KLF10|7071|Kruppel-like factor 10##BC095399|KLF10|7071|Kruppel-like factor 10##NM_005655|KLF10|7071|Kruppel-like factor 10	0.761603	denovo_WM_21:8:0.762
chr19	49496609	49496787	reg1000763.p1	6.036	+	BC003182 TSC_hg19_v1_chr19_-_49496567 NM_001161587 NM_002103	-89	-	TSC_hg19_v1_chr19_-_49496564 AK223579 AK291672 AK294349 AK300369 AK302738 AK303712	-134	-	TSC_hg19_v1_chr19_-_49496541 J04501 BC007688 BC002617	-164	-	TSC_hg19_v1_chr19_+_49497154 AK301344 AK027762 AK074542 AB024301 BC004531 BC008355 NM_006666 AF124607 AF151804 AF155138 AM393635 BC000428 Y18417 AK057498 AL136743 AB464184 CU678752 CU678925 DQ891392 DQ894568	446	+	NM_000894	23648	-	K03181 BC022796 BC106059 AK291552 NM_000737	30827	-	BC003182|GYS1|2997|glycogen synthase 1 (muscle)##NM_001161587|GYS1|2997|glycogen synthase 1 (muscle)##NM_002103|GYS1|2997|glycogen synthase 1 (muscle)##AK223579|GYS1|2997|glycogen synthase 1 (muscle)##AK291672|GYS1|2997|glycogen synthase 1 (muscle)##AK294349|GYS1|2997|glycogen synthase 1 (muscle)##AK300369|GYS1|2997|glycogen synthase 1 (muscle)##AK302738|GYS1|2997|glycogen synthase 1 (muscle)##AK303712|GYS1|2997|glycogen synthase 1 (muscle)##J04501|GYS1|2997|glycogen synthase 1 (muscle)##BC007688|GYS1|2997|glycogen synthase 1 (muscle)##BC002617|GYS1|2997|glycogen synthase 1 (muscle)##AK301344|RUVBL2|10856|RuvB-like 2 (E. coli)##AK027762|RUVBL2|10856|RuvB-like 2 (E. coli)##AK074542|RUVBL2|10856|RuvB-like 2 (E. coli)##AB024301|RUVBL2|10856|RuvB-like 2 (E. coli)##BC004531|RUVBL2|10856|RuvB-like 2 (E. coli)##BC008355|RUVBL2|10856|RuvB-like 2 (E. coli)##NM_006666|RUVBL2|10856|RuvB-like 2 (E. coli)##AF124607|RUVBL2|10856|RuvB-like 2 (E. coli)##AF151804|RUVBL2|10856|RuvB-like 2 (E. coli)##AF155138|RUVBL2|10856|RuvB-like 2 (E. coli)##AM393635|RUVBL2|10856|RuvB-like 2 (E. coli)##BC000428|RUVBL2|10856|RuvB-like 2 (E. coli)##Y18417|RUVBL2|10856|RuvB-like 2 (E. coli)##AK057498|RUVBL2|10856|RuvB-like 2 (E. coli)##AL136743|RUVBL2|10856|RuvB-like 2 (E. coli)##DQ891392|RUVBL2|10856|RuvB-like 2 (E. coli)##DQ894568|RUVBL2|10856|RuvB-like 2 (E. coli)##NM_000894|LHB|3972|luteinizing hormone beta polypeptide##K03181|CGB|1082|chorionic gonadotropin, beta polypeptide##BC022796|CGB|1082|chorionic gonadotropin, beta polypeptide##BC106059|CGB|1082|chorionic gonadotropin, beta polypeptide##AK291552|CGB|1082|chorionic gonadotropin, beta polypeptide##NM_000737|CGB|1082|chorionic gonadotropin, beta polypeptide	0.102028	
chr5	137514664	137514771	reg1000909.p2	6.035	+	NM_005733	-301	+	BC008039 BC008076 AB384833 AB209079 TSC_hg19_v1_chr5_-_137514319 AK310380 AK289951 AK293621 AK297756 AK299694 AK312333 AK225928 AL136823 NM_001164326 NM_006696 NM_139199	-384	-	U90450 AK312181 AF067724 BC026182 NM_003551	-39614	-	TSC_hg19_v1_chr5_+_137514857 AK296879 AK025790 AF153329 BC012999	98	+	AF191341 BT009810 AB590268 DQ891686 DQ894870 TSC_hg19_v1_chr5_-_137549013 BC017713 AF053977 BC005258 BC010944 AK291610 AB011472 AK223250	34286	-	AK304635 TSC_hg19_v1_chr5_-_137549034 NM_004661	34314	-	NM_005733|KIF20A|10112|kinesin family member 20A##BC008039|BRD8|10902|bromodomain containing 8##BC008076|BRD8|10902|bromodomain containing 8##AB209079|BRD8|10902|bromodomain containing 8##AK310380|BRD8|10902|bromodomain containing 8##AK289951|BRD8|10902|bromodomain containing 8##AK293621|BRD8|10902|bromodomain containing 8##AK297756|BRD8|10902|bromodomain containing 8##AK312333|BRD8|10902|bromodomain containing 8##AK225928|BRD8|10902|bromodomain containing 8##AL136823|BRD8|10902|bromodomain containing 8##NM_001164326|BRD8|10902|bromodomain containing 8##NM_006696|BRD8|10902|bromodomain containing 8##NM_139199|BRD8|10902|bromodomain containing 8##U90450|NME5|8382|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)##AK312181|NME5|8382|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)##AF067724|NME5|8382|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)##BC026182|NME5|8382|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)##NM_003551|NME5|8382|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)##AK296879|KIF20A|10112|kinesin family member 20A##AK025790|KIF20A|10112|kinesin family member 20A##AF153329|KIF20A|10112|kinesin family member 20A##BC012999|KIF20A|10112|kinesin family member 20A##AF191341|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##BT009810|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##DQ891686|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##DQ894870|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##BC017713|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AF053977|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##BC005258|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##BC010944|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AK291610|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AB011472|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AK223250|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AK304635|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##NM_004661|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)	0.868024	denovo_WM_21:17:0.868
chr11	17298120	17298258	reg1000872.p2	6.025	+	TSC_hg19_v1_chr11_-_17229534 AK309610 AK299474 AK304262 BC040952 BC031681 AK294416 BC035982 AK310248	-68692	-	Y13367 AB385161 HQ258691 BC113658 NM_002645	-106869	-	X79239 AB528349 CU688732 TSC_hg19_v1_chr11_-_17099216 DQ891107 DQ894288 BC000475 BC029732 BC100032 BC006772 AK312060 BC066322 D28429 L01124 NM_001017	-198950	-	TSC_hg19_v1_chr11_+_17298285 EU039832 EU039833 NM_005013 X76732 BC111556 AF450266	124	+	TSC_hg19_v1_chr11_+_17332454 BC172867	34294	+	TSC_hg19_v1_chr11_+_17373346 CR749521 NM_001202439 BX537685 BC136797 BC136800	75152	+	AK309610|PIK3C2A|5286|phosphoinositide-3-kinase, class 2, alpha polypeptide##AK299474|PIK3C2A|5286|phosphoinositide-3-kinase, class 2, alpha polypeptide##AK304262|PIK3C2A|5286|phosphoinositide-3-kinase, class 2, alpha polypeptide##BC040952|PIK3C2A|5286|phosphoinositide-3-kinase, class 2, alpha polypeptide##BC031681|PIK3C2A|5286|phosphoinositide-3-kinase, class 2, alpha polypeptide##AK294416|PIK3C2A|5286|phosphoinositide-3-kinase, class 2, alpha polypeptide##AK310248|PIK3C2A|5286|phosphoinositide-3-kinase, class 2, alpha polypeptide##Y13367|PIK3C2A|5286|phosphoinositide-3-kinase, class 2, alpha polypeptide##HQ258691|PIK3C2A|5286|phosphoinositide-3-kinase, class 2, alpha polypeptide##BC113658|PIK3C2A|5286|phosphoinositide-3-kinase, class 2, alpha polypeptide##NM_002645|PIK3C2A|5286|phosphoinositide-3-kinase, class 2, alpha polypeptide##X79239|RPS13|6207|ribosomal protein S13##DQ891107|RPS13|6207|ribosomal protein S13##DQ894288|RPS13|6207|ribosomal protein S13##BC000475|RPS13|6207|ribosomal protein S13##BC029732|RPS13|6207|ribosomal protein S13##BC100032|RPS13|6207|ribosomal protein S13##BC006772|RPS13|6207|ribosomal protein S13##AK312060|RPS13|6207|ribosomal protein S13##BC066322|RPS13|6207|ribosomal protein S13##L01124|RPS13|6207|ribosomal protein S13##NM_001017|RPS13|6207|ribosomal protein S13##EU039832|NUCB2|4925|nucleobindin 2##EU039833|NUCB2|4925|nucleobindin 2##NM_005013|NUCB2|4925|nucleobindin 2##X76732|NUCB2|4925|nucleobindin 2##BC111556|NUCB2|4925|nucleobindin 2##AF450266|NUCB2|4925|nucleobindin 2##CR749521|B7H6|374383|B7 homolog 6##NM_001202439|B7H6|374383|B7 homolog 6##BX537685|B7H6|374383|B7 homolog 6##BC136797|B7H6|374383|B7 homolog 6##BC136800|B7H6|374383|B7 homolog 6	1.099673	denovo_WM_21:-7:0.201	denovo_WM_21:24:0.899
chr12	110011395	110011518	reg1000630.p1	6.011	+	TSC_hg19_v1_chr12_-_110011310 BC005054 BC011831 AK295211 AK312598 NM_052845	-135	-	TSC_hg19_v1_chr12_+_109972962 BC013182	-38485	+	AK301036 TSC_hg19_v1_chr12_+_109967767 AK304678	-43695	+	NM_000431 NM_001114185 TSC_hg19_v1_chr12_+_110011598	100	+	M88468 AB209722 TSC_hg19_v1_chr12_+_110011620 AK315678 AK293130 AK295338 BC016140	175	+	NM_032829 BC020193	140731	+	BC005054|MMAB|326625|methylmalonic aciduria (cobalamin deficiency) cblB type##BC011831|MMAB|326625|methylmalonic aciduria (cobalamin deficiency) cblB type##AK295211|MMAB|326625|methylmalonic aciduria (cobalamin deficiency) cblB type##AK312598|MMAB|326625|methylmalonic aciduria (cobalamin deficiency) cblB type##NM_052845|MMAB|326625|methylmalonic aciduria (cobalamin deficiency) cblB type##BC013182|UBE3B|89910|ubiquitin protein ligase E3B##AK304678|UBE3B|89910|ubiquitin protein ligase E3B##NM_000431|MVK|4598|mevalonate kinase##NM_001114185|MVK|4598|mevalonate kinase##M88468|MVK|4598|mevalonate kinase##AB209722|MVK|4598|mevalonate kinase##AK315678|MVK|4598|mevalonate kinase##AK293130|MVK|4598|mevalonate kinase##AK295338|MVK|4598|mevalonate kinase##BC016140|MVK|4598|mevalonate kinase##NM_032829|C12orf34|84915|chromosome 12 open reading frame 34##BC020193|C12orf34|84915|chromosome 12 open reading frame 34	2.823198	denovo_WM_21:-13:0.949	denovo_WM_21:-66:0.880	denovo_WM_21:97:0.994
chr6_qbl_hap6	3406976	3407113	reg1000531.p1	5.982	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.372645	denovo_WM_21:35:0.373
chr10	99393230	99393348	reg1000893.p1	5.981	+	AK289406 DQ338435 DQ338436 AL834132 BC022054 BC093023 TSC_hg19_v1_chr10_-_99393255 AK098791 AJ312050 NM_178832	-30	-	AM393165 AM393183 AM393504 AM393792 NM_001009997 BC037252	-43871	+	TSC_hg19_v1_chr10_+_99344421 AK289440 CU691258 CU692268 EU831607 EU831618 EU831694 EU831704	-48849	+	BC010230 BC040015 AJ431726 NM_001098831	592	-	TSC_hg19_v1_chr10_+_99400444 AJ303098 NM_018425	7153	+	TSC_hg19_v1_chr10_+_99400490 BC003167 DQ893537 DQ893758 BT007330	7195	+	AK289406|MORN4|118812|MORN repeat containing 4##DQ338435|MORN4|118812|MORN repeat containing 4##DQ338436|MORN4|118812|MORN repeat containing 4##AL834132|MORN4|118812|MORN repeat containing 4##BC022054|MORN4|118812|MORN repeat containing 4##BC093023|MORN4|118812|MORN repeat containing 4##AK098791|MORN4|118812|MORN repeat containing 4##AJ312050|MORN4|118812|MORN repeat containing 4##NM_178832|MORN4|118812|MORN repeat containing 4##AM393165|C10orf62|414157|chromosome 10 open reading frame 62##AM393183|C10orf62|414157|chromosome 10 open reading frame 62##AM393504|C10orf62|414157|chromosome 10 open reading frame 62##AM393792|C10orf62|414157|chromosome 10 open reading frame 62##NM_001009997|C10orf62|414157|chromosome 10 open reading frame 62##BC037252|C10orf62|414157|chromosome 10 open reading frame 62##AK289440|HOGA1|112817|4-hydroxy-2-oxoglutarate aldolase 1##EU831607|HOGA1|112817|4-hydroxy-2-oxoglutarate aldolase 1##EU831618|HOGA1|112817|4-hydroxy-2-oxoglutarate aldolase 1##EU831694|HOGA1|112817|4-hydroxy-2-oxoglutarate aldolase 1##EU831704|HOGA1|112817|4-hydroxy-2-oxoglutarate aldolase 1##BC010230|MORN4|118812|MORN repeat containing 4##BC040015|MORN4|118812|MORN repeat containing 4##AJ431726|MORN4|118812|MORN repeat containing 4##NM_001098831|MORN4|118812|MORN repeat containing 4##AJ303098|PI4K2A|55361|phosphatidylinositol 4-kinase type 2 alpha##NM_018425|PI4K2A|55361|phosphatidylinositol 4-kinase type 2 alpha##BC003167|PI4K2A|55361|phosphatidylinositol 4-kinase type 2 alpha##DQ893537|PI4K2A|55361|phosphatidylinositol 4-kinase type 2 alpha##DQ893758|PI4K2A|55361|phosphatidylinositol 4-kinase type 2 alpha##BT007330|PI4K2A|55361|phosphatidylinositol 4-kinase type 2 alpha	0.894334	denovo_WM_21:-10:0.837
chr11	4629475	4629628	reg1000958.p1	5.977	+	AK301120 TSC_hg19_v1_chr11_-_4629404 AK310888 AK291166 BC109063 AF360739 AL832730 AK056523 NM_018073	-117	-	AB463977 NM_001005169	-14283	+	BC136921 BC151144 NM_001005170	-21531	+	BC140717 NM_001004751	31393	+	BC022401 NM_152430 AL833127 AY698056	35632	+	BC020768 AY033942 AK314051 NM_030774	89460	-	AK301120|TRIM68|55128|tripartite motif containing 68##AK310888|TRIM68|55128|tripartite motif containing 68##AK291166|TRIM68|55128|tripartite motif containing 68##BC109063|TRIM68|55128|tripartite motif containing 68##AF360739|TRIM68|55128|tripartite motif containing 68##AL832730|TRIM68|55128|tripartite motif containing 68##AK056523|TRIM68|55128|tripartite motif containing 68##NM_018073|TRIM68|55128|tripartite motif containing 68##NM_001005169|OR52I1|390037|olfactory receptor, family 52, subfamily I, member 1##BC136921|OR52I2|143502|olfactory receptor, family 52, subfamily I, member 2##BC151144|OR52I2|143502|olfactory receptor, family 52, subfamily I, member 2##NM_001005170|OR52I2|143502|olfactory receptor, family 52, subfamily I, member 2##BC140717|OR51D1|390038|olfactory receptor, family 51, subfamily D, member 1##NM_001004751|OR51D1|390038|olfactory receptor, family 51, subfamily D, member 1##BC022401|OR51E1|143503|olfactory receptor, family 51, subfamily E, member 1##NM_152430|OR51E1|143503|olfactory receptor, family 51, subfamily E, member 1##AL833127|OR51E1|143503|olfactory receptor, family 51, subfamily E, member 1##AY698056|OR51E1|143503|olfactory receptor, family 51, subfamily E, member 1##BC020768|OR51E2|81285|olfactory receptor, family 51, subfamily E, member 2##AY033942|OR51E2|81285|olfactory receptor, family 51, subfamily E, member 2##AK314051|OR51E2|81285|olfactory receptor, family 51, subfamily E, member 2##NM_030774|OR51E2|81285|olfactory receptor, family 51, subfamily E, member 2	1.966773	denovo_WM_21:1:0.952	denovo_WM_21:-62:0.935
chr16	1393168	1393303	reg1000976.p2	5.976	+	AK299358 NM_001199096	-7038	+	AK294491 AK315059 NM_003933 BC104966 BC112129 AB018277 AB462958	-8652	+	NM_001199097 NM_001199098 NM_001199099 TSC_hg19_v1_chr16_+_1383645 AK294744 AK295645 AK299309 AL834321	-9605	+	TSC_hg19_v1_chr16_-_1401856 BC011785 BC017325 BC013943 BC016699 NM_001001410	8600	-	NM_032520 TSC_hg19_v1_chr16_+_1401931 AK312067	8681	+	TSC_hg19_v1_chr16_+_1401951 BC014592 DQ890827 DQ893981 AF302786 CU677055 AY203933 BC131525	8785	+	AK299358|BAIAP3|8938|BAI1-associated protein 3##NM_001199096|BAIAP3|8938|BAI1-associated protein 3##AK294491|BAIAP3|8938|BAI1-associated protein 3##AK315059|BAIAP3|8938|BAI1-associated protein 3##NM_003933|BAIAP3|8938|BAI1-associated protein 3##BC104966|BAIAP3|8938|BAI1-associated protein 3##BC112129|BAIAP3|8938|BAI1-associated protein 3##AB018277|BAIAP3|8938|BAI1-associated protein 3##NM_001199097|BAIAP3|8938|BAI1-associated protein 3##NM_001199098|BAIAP3|8938|BAI1-associated protein 3##NM_001199099|BAIAP3|8938|BAI1-associated protein 3##AK294744|BAIAP3|8938|BAI1-associated protein 3##AK295645|BAIAP3|8938|BAI1-associated protein 3##AK299309|BAIAP3|8938|BAI1-associated protein 3##AL834321|BAIAP3|8938|BAI1-associated protein 3##BC011785|C16orf42|115939|chromosome 16 open reading frame 42##BC017325|C16orf42|115939|chromosome 16 open reading frame 42##BC013943|C16orf42|115939|chromosome 16 open reading frame 42##BC016699|C16orf42|115939|chromosome 16 open reading frame 42##NM_001001410|C16orf42|115939|chromosome 16 open reading frame 42##NM_032520|GNPTG|84572|N-acetylglucosamine-1-phosphate transferase, gamma subunit##AK312067|GNPTG|84572|N-acetylglucosamine-1-phosphate transferase, gamma subunit##BC014592|GNPTG|84572|N-acetylglucosamine-1-phosphate transferase, gamma subunit##DQ890827|GNPTG|84572|N-acetylglucosamine-1-phosphate transferase, gamma subunit##DQ893981|GNPTG|84572|N-acetylglucosamine-1-phosphate transferase, gamma subunit##AF302786|GNPTG|84572|N-acetylglucosamine-1-phosphate transferase, gamma subunit##AY203933|GNPTG|84572|N-acetylglucosamine-1-phosphate transferase, gamma subunit##BC131525|GNPTG|84572|N-acetylglucosamine-1-phosphate transferase, gamma subunit	0.135079	
chr3	25706435	25706550	reg1000912.p1	5.973	+	TSC_hg19_v1_chr3_-_25706395 AK296510 AK307450	-99	-	TSC_hg19_v1_chr3_-_25706085 NM_001068 X68060 Z15111	-517	-	AB208879 TSC_hg19_v1_chr3_-_25683850	-22654	-	TSC_hg19_v1_chr3_-_25824906 BC000963 AK022471 DQ893509 DQ896501 AK310473	118395	-	TSC_hg19_v1_chr3_-_25824932 BC017220 AF250924 BC007226	118429	-	TSC_hg19_v1_chr3_-_25824955 NM_001145293 NM_001145295 NM_018297	118478	-	AK296510|TOP2B|7155|topoisomerase (DNA) II beta 180kDa##AK307450|TOP2B|7155|topoisomerase (DNA) II beta 180kDa##NM_001068|TOP2B|7155|topoisomerase (DNA) II beta 180kDa##X68060|TOP2B|7155|topoisomerase (DNA) II beta 180kDa##Z15111|TOP2B|7155|topoisomerase (DNA) II beta 180kDa##AB208879|TOP2B|7155|topoisomerase (DNA) II beta 180kDa##BC000963|NGLY1|55768|N-glycanase 1##AK022471|NGLY1|55768|N-glycanase 1##DQ893509|NGLY1|55768|N-glycanase 1##DQ896501|NGLY1|55768|N-glycanase 1##AK310473|NGLY1|55768|N-glycanase 1##BC017220|NGLY1|55768|N-glycanase 1##AF250924|NGLY1|55768|N-glycanase 1##BC007226|NGLY1|55768|N-glycanase 1##NM_001145293|NGLY1|55768|N-glycanase 1##NM_001145295|NGLY1|55768|N-glycanase 1##NM_018297|NGLY1|55768|N-glycanase 1	0.147525	
chr6	111195839	111196023	reg1000971.p2	5.968	+	TSC_hg19_v1_chr6_-_111136673 BC024247	-59205	-	TSC_hg19_v1_chr6_-_111136507 AY028424	-59417	-	TSC_hg19_v1_chr6_-_111136424 BC037289 NM_015076 AK292360	-59513	-	AK302761 NM_001634 TSC_hg19_v1_chr6_+_111195987 AK300330 AL832698 BX640599 NM_001033059 AJ420527 M21154	91	+	AF361492 AF361496 NM_138408 BC104655 TSC_hg19_v1_chr6_+_111279890	83899	+	BC011593 TSC_hg19_v1_chr6_+_111279945 AK057977 EF137904	84027	+	BC024247|CDK19|23097|cyclin-dependent kinase 19##AY028424|CDK19|23097|cyclin-dependent kinase 19##BC037289|CDK19|23097|cyclin-dependent kinase 19##NM_015076|CDK19|23097|cyclin-dependent kinase 19##AK292360|CDK19|23097|cyclin-dependent kinase 19##AK302761|AMD1|262|adenosylmethionine decarboxylase 1##NM_001634|AMD1|262|adenosylmethionine decarboxylase 1##AK300330|AMD1|262|adenosylmethionine decarboxylase 1##AL832698|AMD1|262|adenosylmethionine decarboxylase 1##BX640599|AMD1|262|adenosylmethionine decarboxylase 1##NM_001033059|AMD1|262|adenosylmethionine decarboxylase 1##AJ420527|AMD1|262|adenosylmethionine decarboxylase 1##M21154|AMD1|262|adenosylmethionine decarboxylase 1##AF361492|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##AF361496|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##NM_138408|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##BC104655|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##BC011593|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##AK057977|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##EF137904|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa	0.0	
chr6_mann_hap4	3488830	3488953	reg1000571.p1	5.961	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.391695	denovo_WM_21:-7:0.373
chr17	73285512	73285643	reg1001051.p1	5.959	+	TSC_hg19_v1_chr17_-_73285501 AK075239 NM_001126121 NM_001126122 NM_021734	-48	-	BC001075 BC005120 TSC_hg19_v1_chr17_-_73285471 AL833387	-105	-	TSC_hg19_v1_chr17_-_73267265 AF225422 NM_001242498 NM_020679	-18263	-	AB385058 AF498925 CR450363 CR541942 DQ891830 DQ894923 CU674310 L29511 TSC_hg19_v1_chr17_-_73389844	104200	-	AK091010 TSC_hg19_v1_chr17_-_73401721	116067	-	TSC_hg19_v1_chr17_-_73401738 BC000631	116157	-	AK075239|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_001126121|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_001126122|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_021734|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##BC001075|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##BC005120|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##AL833387|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##AF225422|MIF4GD|57409|MIF4G domain containing##NM_001242498|MIF4GD|57409|MIF4G domain containing##NM_020679|MIF4GD|57409|MIF4G domain containing##AF498925|GRB2|2885|growth factor receptor-bound protein 2##CR450363|GRB2|2885|growth factor receptor-bound protein 2##CR541942|GRB2|2885|growth factor receptor-bound protein 2##DQ891830|GRB2|2885|growth factor receptor-bound protein 2##DQ894923|GRB2|2885|growth factor receptor-bound protein 2##L29511|GRB2|2885|growth factor receptor-bound protein 2##AK091010|GRB2|2885|growth factor receptor-bound protein 2##BC000631|GRB2|2885|growth factor receptor-bound protein 2	0.634302	denovo_WM_21:-28:0.634
chr19	36822728	36822837	reg1000990.p1	5.956	+	TSC_hg19_v1_chr19_-_36822604 BC041949	-154	-	TSC_hg19_v1_chr19_+_36727378 AB464376 AK311486	-95430	+	AK313460 TSC_hg19_v1_chr19_+_36726957	-95862	+	TSC_hg19_v1_chr19_-_36870093 AK293103 NM_020917	47310	-	TSC_hg19_v1_chr19_-_36909491 AK315709 GU388429 AL834267 NM_133466 AK074942	86739	-	AK027685 NM_032838 AK074497 TSC_hg19_v1_chr19_-_36980464 AK316262 AK299393 NM_001145343 NM_001145344 NM_001145345	157618	-	BC041949|LOC100506930|100506930|uncharacterized LOC100506930##AK311486|ZNF146|7705|zinc finger protein 146##AK313460|ZNF146|7705|zinc finger protein 146##AK293103|ZFP14|57677|zinc finger protein 14 homolog (mouse)##NM_020917|ZFP14|57677|zinc finger protein 14 homolog (mouse)##AK315709|ZFP82|284406|zinc finger protein 82 homolog (mouse)##GU388429|ZFP82|284406|zinc finger protein 82 homolog (mouse)##AL834267|ZFP82|284406|zinc finger protein 82 homolog (mouse)##NM_133466|ZFP82|284406|zinc finger protein 82 homolog (mouse)##AK074942|ZFP82|284406|zinc finger protein 82 homolog (mouse)##AK027685|ZNF566|84924|zinc finger protein 566##NM_032838|ZNF566|84924|zinc finger protein 566##AK074497|ZNF566|84924|zinc finger protein 566##AK316262|ZNF566|84924|zinc finger protein 566##AK299393|ZNF566|84924|zinc finger protein 566##NM_001145343|ZNF566|84924|zinc finger protein 566##NM_001145344|ZNF566|84924|zinc finger protein 566##NM_001145345|ZNF566|84924|zinc finger protein 566	2.138954	denovo_WM_21:3:0.217	denovo_WM_21:34:0.985	denovo_WM_21:-100:0.937
chr1	151689401	151689491	reg1000677.p1	5.955	+	BC004145 TSC_hg19_v1_chr1_-_151689279 BC052491 AK299681 AY165003 NM_007185	-177	-	AB209264 NM_001172648 NM_001172649	-610	-	BC107862 TSC_hg19_v1_chr1_+_151630762	-58710	+	NM_001144956	4566	+	BC073949 NM_001134939	45998	+	TSC_hg19_v1_chr1_-_151735962 BC004517 AK300668	46479	-	BC004145|CELF3|11189|CUGBP, Elav-like family member 3##BC052491|CELF3|11189|CUGBP, Elav-like family member 3##AY165003|CELF3|11189|CUGBP, Elav-like family member 3##NM_007185|CELF3|11189|CUGBP, Elav-like family member 3##AB209264|CELF3|11189|CUGBP, Elav-like family member 3##NM_001172648|CELF3|11189|CUGBP, Elav-like family member 3##NM_001172649|CELF3|11189|CUGBP, Elav-like family member 3##BC107862|SNX27|81609|sorting nexin family member 27##NM_001144956|RIIAD1|284485|regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1##BC073949|OAZ3|51686|ornithine decarboxylase antizyme 3##NM_001134939|OAZ3|51686|ornithine decarboxylase antizyme 3##BC004517|MRPL9|65005|mitochondrial ribosomal protein L9##AK300668|MRPL9|65005|mitochondrial ribosomal protein L9	0.0	
chr3	90327010	90327081	reg1000637.p1	5.952	+	M83941 AF213460 BC026247 TSC_hg19_v1_chr3_+_89156840 AK291411 AB384708	-1170195	+	AF213459 NM_005233 NM_182644 BC063282 TSC_hg19_v1_chr3_+_89156770	-1170324	+	AL832398 NM_173824 TSC_hg19_v1_chr3_+_88199126 BC024188 AK297719 AK313547	-2128017	+	AB590252 DQ892389 DQ895602 TSC_hg19_v1_chr3_-_93692741 Y00692 AK292994	3365631	-	TSC_hg19_v1_chr3_-_93692932 BC015801 NM_000313	3365873	-	TSC_hg19_v1_chr3_+_93698998 BC073842 NM_001174150 NM_001174151 NM_144996 NM_182896 CR936753 BC094725 BC104033 BC104034 BC104035 BC104036 AK299284 BC031093 AK296994 BC062993 BC015439 CR936763 AL713789 CR936756	3371982	+	M83941|EPHA3|2042|EPH receptor A3##AF213460|EPHA3|2042|EPH receptor A3##BC026247|EPHA3|2042|EPH receptor A3##AK291411|EPHA3|2042|EPH receptor A3##AF213459|EPHA3|2042|EPH receptor A3##NM_005233|EPHA3|2042|EPH receptor A3##NM_182644|EPHA3|2042|EPH receptor A3##BC063282|EPHA3|2042|EPH receptor A3##AL832398|C3orf38|285237|chromosome 3 open reading frame 38##NM_173824|C3orf38|285237|chromosome 3 open reading frame 38##BC024188|C3orf38|285237|chromosome 3 open reading frame 38##AK297719|C3orf38|285237|chromosome 3 open reading frame 38##AK313547|C3orf38|285237|chromosome 3 open reading frame 38##DQ892389|PROS1|5627|protein S (alpha)##DQ895602|PROS1|5627|protein S (alpha)##Y00692|PROS1|5627|protein S (alpha)##AK292994|PROS1|5627|protein S (alpha)##BC015801|PROS1|5627|protein S (alpha)##NM_000313|PROS1|5627|protein S (alpha)##BC073842|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_001174150|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_001174151|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_144996|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_182896|ARL13B|200894|ADP-ribosylation factor-like 13B##CR936753|ARL13B|200894|ADP-ribosylation factor-like 13B##BC094725|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104033|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104034|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104035|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104036|ARL13B|200894|ADP-ribosylation factor-like 13B##AK299284|ARL13B|200894|ADP-ribosylation factor-like 13B##BC031093|ARL13B|200894|ADP-ribosylation factor-like 13B##AK296994|ARL13B|200894|ADP-ribosylation factor-like 13B##BC062993|ARL13B|200894|ADP-ribosylation factor-like 13B##BC015439|ARL13B|200894|ADP-ribosylation factor-like 13B##CR936763|ARL13B|200894|ADP-ribosylation factor-like 13B##AL713789|ARL13B|200894|ADP-ribosylation factor-like 13B##CR936756|ARL13B|200894|ADP-ribosylation factor-like 13B	0.0	
chr5	158367988	158368115	reg1000863.p1	5.951	+	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-1081961	-	AK055297 TSC_hg19_v1_chr5_+_157184422	-1183671	+	BC126449 TSC_hg19_v1_chr5_+_157170749 AK095592 NM_173491 BC051353	-1197311	+	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	158406	-	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	158691	-	AK304228 NM_001199382	266597	-	AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##BC126449|LSM11|134353|LSM11, U7 small nuclear RNA associated##AK095592|LSM11|134353|LSM11, U7 small nuclear RNA associated##NM_173491|LSM11|134353|LSM11, U7 small nuclear RNA associated##BC051353|LSM11|134353|LSM11, U7 small nuclear RNA associated##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145	0.0	
chr17	80477447	80477538	reg1000649.p1	5.950	+	TSC_hg19_v1_chr17_+_80416616 BC016440 CU674220 CU677625	-60850	+	TSC_hg19_v1_chr17_+_80416583 AK297875 NM_001083608 NM_012336 NM_031968 BC000438 AK000929 AK303155 AK307351 AF128406	-60929	+	TSC_hg19_v1_chr17_+_80416087 NM_001038618 AK056966	-61420	+	TSC_hg19_v1_chr17_+_80477607 NM_004514	98	+	TSC_hg19_v1_chr17_-_80606321 AK297477 BC000974 AM182326 AB464355 BC007838 NM_019613	128791	-	TSC_hg19_v1_chr17_-_80656575 BC035814 U05227 AB209711 BC018039 NM_006822	179042	-	BC016440|NARF|26502|nuclear prelamin A recognition factor##AK297875|NARF|26502|nuclear prelamin A recognition factor##NM_001083608|NARF|26502|nuclear prelamin A recognition factor##NM_012336|NARF|26502|nuclear prelamin A recognition factor##NM_031968|NARF|26502|nuclear prelamin A recognition factor##BC000438|NARF|26502|nuclear prelamin A recognition factor##AK000929|NARF|26502|nuclear prelamin A recognition factor##AK303155|NARF|26502|nuclear prelamin A recognition factor##AF128406|NARF|26502|nuclear prelamin A recognition factor##NM_001038618|NARF|26502|nuclear prelamin A recognition factor##AK056966|NARF|26502|nuclear prelamin A recognition factor##NM_004514|FOXK2|3607|forkhead box K2##AK297477|WDR45L|56270|WDR45-like##BC000974|WDR45L|56270|WDR45-like##AM182326|WDR45L|56270|WDR45-like##BC007838|WDR45L|56270|WDR45-like##NM_019613|WDR45L|56270|WDR45-like##BC035814|RAB40B|10966|RAB40B, member RAS oncogene family##U05227|RAB40B|10966|RAB40B, member RAS oncogene family##AB209711|RAB40B|10966|RAB40B, member RAS oncogene family##BC018039|RAB40B|10966|RAB40B, member RAS oncogene family##NM_006822|RAB40B|10966|RAB40B, member RAS oncogene family	1.323685	denovo_WM_21:0:0.647	denovo_WM_21:40:0.677
chr11	118966347	118966480	reg1000629.p2	5.940	+	TSC_hg19_v1_chr11_-_118966176 NM_002105 X14850	-238	-	CR457079 AB464561 BC013416 BC004915 BC011694 TSC_hg19_v1_chr11_-_118966173	-275	-	BX647328 NM_001024382 X04217	-7703	+	AK225994 BC000325 BC047771 BC008817 TSC_hg19_v1_chr11_-_118972586 AK301973 AK312783	6145	-	NM_001382 AK095718	6404	-	TSC_hg19_v1_chr11_+_118978097 AB094094 AK025223 NM_014807	11714	+	NM_002105|H2AFX|3014|H2A histone family, member X##X14850|H2AFX|3014|H2A histone family, member X##CR457079|H2AFX|3014|H2A histone family, member X##BC013416|H2AFX|3014|H2A histone family, member X##BC004915|H2AFX|3014|H2A histone family, member X##BC011694|H2AFX|3014|H2A histone family, member X##BX647328|HMBS|3145|hydroxymethylbilane synthase##NM_001024382|HMBS|3145|hydroxymethylbilane synthase##X04217|HMBS|3145|hydroxymethylbilane synthase##AK225994|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##BC000325|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##BC047771|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##AK301973|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##AK312783|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##NM_001382|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##AK095718|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##AB094094|C2CD2L|9854|C2CD2-like##AK025223|C2CD2L|9854|C2CD2-like##NM_014807|C2CD2L|9854|C2CD2-like	0.898875	denovo_WM_21:-88:0.899
chr14	52340161	52340346	reg1000911.p2	5.936	+	TSC_hg19_v1_chr14_+_52327416 BC020774	-12817	+	TSC_hg19_v1_chr14_+_52327387 AL832878	-12861	+	AK001024 AK311334 TSC_hg19_v1_chr14_+_52327363	-12889	+	AF087877 AF100755 AF151857 DQ525179 NM_016039 TSC_hg19_v1_chr14_+_52456231 AK312004 BC001722	116001	+	TSC_hg19_v1_chr14_+_52456323 EU446806 AB463506 AY817175	116086	+	AJ223500 D86425 AB385187 CU690132 TSC_hg19_v1_chr14_-_52535721	195469	-	BC020774|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##AL832878|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##AK001024|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##AF087877|C14orf166|51637|chromosome 14 open reading frame 166##AF100755|C14orf166|51637|chromosome 14 open reading frame 166##AF151857|C14orf166|51637|chromosome 14 open reading frame 166##DQ525179|C14orf166|51637|chromosome 14 open reading frame 166##NM_016039|C14orf166|51637|chromosome 14 open reading frame 166##AK312004|C14orf166|51637|chromosome 14 open reading frame 166##BC001722|C14orf166|51637|chromosome 14 open reading frame 166##EU446806|C14orf166|51637|chromosome 14 open reading frame 166##AY817175|C14orf166|51637|chromosome 14 open reading frame 166##AJ223500|NID2|22795|nidogen 2 (osteonidogen)##D86425|NID2|22795|nidogen 2 (osteonidogen)	0.0	
chr2	85822688	85822825	reg1000804.p1	5.918	+	BC017891 NM_006634 AK292660 AF054825 TSC_hg19_v1_chr2_+_85811585 AF151025 AF077197	-11190	+	TSC_hg19_v1_chr2_+_85804738 AF053233	-18022	+	TSC_hg19_v1_chr2_+_85804705 BC001634	-18053	+	NM_016494 TSC_hg19_v1_chr2_+_85822867 AF151072 BC002803 AK222700 CU678208 CR457165	105	+	BX647409 TSC_hg19_v1_chr2_-_85829789 BC050466 AK291879 AK098152 AK074505 NM_001031738	7033	-	TSC_hg19_v1_chr2_+_85829992 AK056334	7234	+	BC017891|VAMP5|10791|vesicle-associated membrane protein 5 (myobrevin)##NM_006634|VAMP5|10791|vesicle-associated membrane protein 5 (myobrevin)##AK292660|VAMP5|10791|vesicle-associated membrane protein 5 (myobrevin)##AF054825|VAMP5|10791|vesicle-associated membrane protein 5 (myobrevin)##AF151025|VAMP5|10791|vesicle-associated membrane protein 5 (myobrevin)##AF077197|VAMP5|10791|vesicle-associated membrane protein 5 (myobrevin)##AF053233|VAMP8|8673|vesicle-associated membrane protein 8 (endobrevin)##BC001634|VAMP8|8673|vesicle-associated membrane protein 8 (endobrevin)##NM_016494|RNF181|51255|ring finger protein 181##AF151072|RNF181|51255|ring finger protein 181##BC002803|RNF181|51255|ring finger protein 181##AK222700|RNF181|51255|ring finger protein 181##CR457165|RNF181|51255|ring finger protein 181##BX647409|TMEM150A|129303|transmembrane protein 150A##BC050466|TMEM150A|129303|transmembrane protein 150A##AK291879|TMEM150A|129303|transmembrane protein 150A##AK098152|TMEM150A|129303|transmembrane protein 150A##AK074505|TMEM150A|129303|transmembrane protein 150A##NM_001031738|TMEM150A|129303|transmembrane protein 150A##AK056334|USP39|10713|ubiquitin specific peptidase 39	2.063279	denovo_WM_21:35:0.988	denovo_WM_21:-41:0.988
chr9	130477952	130478069	reg1000728.p1	5.916	+	HQ257888 TSC_hg19_v1_chr9_-_130477940 BC032117 BC047012 NM_001002913	-68	-	AK094948 NM_001012502 BC141809	-8728	+	TSC_hg19_v1_chr9_+_130374555 NM_001032221 NM_003165 AK295154 AK293984 AK295802 AF004562 AF004563 BC015749 Y12723 D63851 DQ895426 EU176334 CU677423	-103437	+	AK294862 BC031281 AK057342 AK302422 AK302737 NM_144965	339	+	TSC_hg19_v1_chr9_-_130497605 BC080527 AK027677 BC100907 BC100908 BC100909 BC100910 AK075520 AK055034 AK092388 AX747514 AY358180 BC062340	19568	-	TSC_hg19_v1_chr9_-_130497669 NM_001085347 NM_001134430 NM_001134431 NM_001252018 NM_001252021 NM_001252023 NM_130459	19650	-	HQ257888|PTRH1|138428|peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae)##BC047012|PTRH1|138428|peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae)##NM_001002913|PTRH1|138428|peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae)##AK094948|C9orf117|286207|chromosome 9 open reading frame 117##NM_001012502|C9orf117|286207|chromosome 9 open reading frame 117##BC141809|C9orf117|286207|chromosome 9 open reading frame 117##NM_001032221|STXBP1|6812|syntaxin binding protein 1##NM_003165|STXBP1|6812|syntaxin binding protein 1##AK295154|STXBP1|6812|syntaxin binding protein 1##AK293984|STXBP1|6812|syntaxin binding protein 1##AK295802|STXBP1|6812|syntaxin binding protein 1##AF004562|STXBP1|6812|syntaxin binding protein 1##AF004563|STXBP1|6812|syntaxin binding protein 1##BC015749|STXBP1|6812|syntaxin binding protein 1##Y12723|STXBP1|6812|syntaxin binding protein 1##D63851|STXBP1|6812|syntaxin binding protein 1##DQ895426|STXBP1|6812|syntaxin binding protein 1##EU176334|STXBP1|6812|syntaxin binding protein 1##AK294862|TTC16|158248|tetratricopeptide repeat domain 16##BC031281|TTC16|158248|tetratricopeptide repeat domain 16##AK057342|TTC16|158248|tetratricopeptide repeat domain 16##AK302422|TTC16|158248|tetratricopeptide repeat domain 16##AK302737|TTC16|158248|tetratricopeptide repeat domain 16##NM_144965|TTC16|158248|tetratricopeptide repeat domain 16##BC080527|TOR2A|27433|torsin family 2, member A##AK027677|TOR2A|27433|torsin family 2, member A##BC100907|TOR2A|27433|torsin family 2, member A##BC100908|TOR2A|27433|torsin family 2, member A##BC100909|TOR2A|27433|torsin family 2, member A##BC100910|TOR2A|27433|torsin family 2, member A##AK075520|TOR2A|27433|torsin family 2, member A##AK055034|TOR2A|27433|torsin family 2, member A##AK092388|TOR2A|27433|torsin family 2, member A##AY358180|TOR2A|27433|torsin family 2, member A##BC062340|TOR2A|27433|torsin family 2, member A##NM_001085347|TOR2A|27433|torsin family 2, member A##NM_001134430|TOR2A|27433|torsin family 2, member A##NM_001134431|TOR2A|27433|torsin family 2, member A##NM_001252018|TOR2A|27433|torsin family 2, member A##NM_001252021|TOR2A|27433|torsin family 2, member A##NM_001252023|TOR2A|27433|torsin family 2, member A##NM_130459|TOR2A|27433|torsin family 2, member A	0.050562	
chr14	74960306	74960422	reg1000786.p1	5.913	+	TSC_hg19_v1_chr14_-_74960037 AK311931 BC002532 NM_006432	-305	-	AK222474 TSC_hg19_v1_chr14_-_74960013 AK300879	-350	-	CU678022 DQ891907 DQ895093 X67698 AK298975 TSC_hg19_v1_chr14_-_74959988	-378	-	TSC_hg19_v1_chr14_+_74960467 AK290728 NM_194279 BC015771 BX248252 BC032893	94	+	TSC_hg19_v1_chr14_-_75078940 BC078659 Z37976 NM_000428 S82451	118495	-	TSC_hg19_v1_chr14_-_75179784 AB002315 AK304217 AK296912 BX248747 BC032944 NM_001039479	219412	-	AK311931|NPC2|10577|Niemann-Pick disease, type C2##BC002532|NPC2|10577|Niemann-Pick disease, type C2##NM_006432|NPC2|10577|Niemann-Pick disease, type C2##AK222474|NPC2|10577|Niemann-Pick disease, type C2##AK300879|NPC2|10577|Niemann-Pick disease, type C2##DQ891907|NPC2|10577|Niemann-Pick disease, type C2##DQ895093|NPC2|10577|Niemann-Pick disease, type C2##X67698|NPC2|10577|Niemann-Pick disease, type C2##AK298975|NPC2|10577|Niemann-Pick disease, type C2##AK290728|ISCA2|122961|iron-sulfur cluster assembly 2 homolog (S. cerevisiae)##NM_194279|ISCA2|122961|iron-sulfur cluster assembly 2 homolog (S. cerevisiae)##BC015771|ISCA2|122961|iron-sulfur cluster assembly 2 homolog (S. cerevisiae)##BX248252|ISCA2|122961|iron-sulfur cluster assembly 2 homolog (S. cerevisiae)##BC032893|ISCA2|122961|iron-sulfur cluster assembly 2 homolog (S. cerevisiae)##BC078659|LTBP2|4053|latent transforming growth factor beta binding protein 2##Z37976|LTBP2|4053|latent transforming growth factor beta binding protein 2##NM_000428|LTBP2|4053|latent transforming growth factor beta binding protein 2##S82451|LTBP2|4053|latent transforming growth factor beta binding protein 2##AB002315|KIAA0317|9870|KIAA0317##AK304217|KIAA0317|9870|KIAA0317##AK296912|KIAA0317|9870|KIAA0317##BX248747|KIAA0317|9870|KIAA0317##BC032944|KIAA0317|9870|KIAA0317##NM_001039479|KIAA0317|9870|KIAA0317	0.402541	denovo_WM_21:-35:0.384
chr19	38495254	38495382	reg1001004.p1	5.908	+	TSC_hg19_v1_chr19_+_38397906 BC150620 BC036863	-97406	+	TSC_hg19_v1_chr19_+_38397847 NM_015073	-97461	+	AK302913 AY026504 AK128826 NM_031951	-98044	-	AB463560 GQ358728 BC125152 BC125153 U43843 AK308563 NM_001135155 NM_004647	219517	-	BC021191 TSC_hg19_v1_chr19_-_38720320 NM_001135156	224998	-	TSC_hg19_v1_chr19_-_38720336 AK297581	225016	-	BC150620|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##BC036863|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##NM_015073|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##AK302913|WDR87|83889|WD repeat domain 87##AY026504|WDR87|83889|WD repeat domain 87##AK128826|WDR87|83889|WD repeat domain 87##NM_031951|WDR87|83889|WD repeat domain 87##GQ358728|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125152|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125153|DPF1|8193|D4, zinc and double PHD fingers family 1##U43843|DPF1|8193|D4, zinc and double PHD fingers family 1##AK308563|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135155|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_004647|DPF1|8193|D4, zinc and double PHD fingers family 1##BC021191|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135156|DPF1|8193|D4, zinc and double PHD fingers family 1##AK297581|DPF1|8193|D4, zinc and double PHD fingers family 1	0.410031	denovo_WM_21:22:0.327
chr16	2932724	2932886	reg1000857.p1	5.906	+	CU679465 AB010779 AF321182 BC009726 AY358396 NM_022119	-24668	-	NM_145252 AY359021 JN411265 BC009722 AB528168 AM392915 AM393869 EF067313 AK311810	-52567	+	BC074999 BC075000 TSC_hg19_v1_chr16_+_2867242 AY359034 AF058300 AB031329 AB031330	-65559	+	NM_001142499 NM_001142500 NM_138439 TSC_hg19_v1_chr16_+_2933215 BC014089	451	+	TSC_hg19_v1_chr16_+_2961983 BC028572 NM_020912 NM_032296	29159	+	TSC_hg19_v1_chr16_+_2961994 AB046772	29192	+	AB010779|PRSS22|64063|protease, serine, 22##AF321182|PRSS22|64063|protease, serine, 22##BC009726|PRSS22|64063|protease, serine, 22##AY358396|PRSS22|64063|protease, serine, 22##NM_022119|PRSS22|64063|protease, serine, 22##NM_145252|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##AY359021|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##JN411265|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##BC009722|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##AM392915|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##AM393869|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##EF067313|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##AK311810|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##BC074999|PRSS21|10942|protease, serine, 21 (testisin)##BC075000|PRSS21|10942|protease, serine, 21 (testisin)##AY359034|PRSS21|10942|protease, serine, 21 (testisin)##AF058300|PRSS21|10942|protease, serine, 21 (testisin)##AB031329|PRSS21|10942|protease, serine, 21 (testisin)##AB031330|PRSS21|10942|protease, serine, 21 (testisin)##NM_001142499|FLYWCH2|114984|FLYWCH family member 2##NM_001142500|FLYWCH2|114984|FLYWCH family member 2##NM_138439|FLYWCH2|114984|FLYWCH family member 2##BC014089|FLYWCH2|114984|FLYWCH family member 2##BC028572|FLYWCH1|84256|FLYWCH-type zinc finger 1##NM_020912|FLYWCH1|84256|FLYWCH-type zinc finger 1##NM_032296|FLYWCH1|84256|FLYWCH-type zinc finger 1##AB046772|FLYWCH1|84256|FLYWCH-type zinc finger 1	0.856077	denovo_WM_21:-22:0.620	denovo_WM_21:-96:0.236
chr12	121790226	121790372	reg1000974.p1	5.903	+	TSC_hg19_v1_chr12_-_121790244 NM_016237	-33	-	TSC_hg19_v1_chr12_-_121790212 BC001081 BC001950 BC006301 AK315451	-110	-	TSC_hg19_v1_chr12_-_121790158 AF191339 CU674542 CU675341	-147	-	AK025614 NM_001137559	1712	-	AF306709 TSC_hg19_v1_chr12_+_121837931 NM_025126 NM_194271 AK025439 AK225285 AK304366 BC007826 BC039029 BC046174 BC029038	47665	+	TSC_hg19_v1_chr12_-_121905104 BC028612 AK299827 AK316470	114775	-	NM_016237|ANAPC5|51433|anaphase promoting complex subunit 5##BC001081|ANAPC5|51433|anaphase promoting complex subunit 5##BC001950|ANAPC5|51433|anaphase promoting complex subunit 5##BC006301|ANAPC5|51433|anaphase promoting complex subunit 5##AK315451|ANAPC5|51433|anaphase promoting complex subunit 5##AF191339|ANAPC5|51433|anaphase promoting complex subunit 5##AK025614|ANAPC5|51433|anaphase promoting complex subunit 5##NM_001137559|ANAPC5|51433|anaphase promoting complex subunit 5##AF306709|RNF34|80196|ring finger protein 34##NM_025126|RNF34|80196|ring finger protein 34##NM_194271|RNF34|80196|ring finger protein 34##AK025439|RNF34|80196|ring finger protein 34##AK225285|RNF34|80196|ring finger protein 34##BC007826|RNF34|80196|ring finger protein 34##BC039029|RNF34|80196|ring finger protein 34##BC046174|RNF34|80196|ring finger protein 34##BC028612|KDM2B|84678|lysine (K)-specific demethylase 2B##AK299827|KDM2B|84678|lysine (K)-specific demethylase 2B##AK316470|KDM2B|84678|lysine (K)-specific demethylase 2B	1.206973	denovo_WM_21:-9:0.990	denovo_WM_21:31:0.217
chr15	65117866	65117985	reg1000749.p1	5.895	+	BC137503 BC137504 TSC_hg19_v1_chr15_-_65117814 BC018978 AK026345 EU084033 NM_025049 AB185926 AB185927	-90	-	BC131612 BC148208 AY369207 NM_194272 TSC_hg19_v1_chr15_-_65067789 AK127873	-50179	-	TSC_hg19_v1_chr15_-_64995461 BC047755 NM_002537	-122456	-	AK311036 NM_001195059 NM_025201 TSC_hg19_v1_chr15_+_65134113 AK096203 BC008744 AF494534	16182	+	TSC_hg19_v1_chr15_+_65204100 AK098736 NM_182703 AK075298 BC110610 AK307698	86164	+	TSC_hg19_v1_chr15_-_65281780 AF212231 NM_001127889	163884	-	BC137503|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##BC137504|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##BC018978|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AK026345|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##EU084033|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##NM_025049|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AB185926|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AB185927|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##BC131612|RBPMS2|348093|RNA binding protein with multiple splicing 2##BC148208|RBPMS2|348093|RNA binding protein with multiple splicing 2##AY369207|RBPMS2|348093|RNA binding protein with multiple splicing 2##NM_194272|RBPMS2|348093|RNA binding protein with multiple splicing 2##AK127873|RBPMS2|348093|RNA binding protein with multiple splicing 2##BC047755|OAZ2|4947|ornithine decarboxylase antizyme 2##NM_002537|OAZ2|4947|ornithine decarboxylase antizyme 2##NM_001195059|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##NM_025201|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##AK096203|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##BC008744|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##AF494534|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##AK098736|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##NM_182703|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##AK075298|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##BC110610|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##AK307698|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##AF212231|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##NM_001127889|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)	0.257847	denovo_WM_21:-2:0.245
chr9	82186529	82186672	reg1000844.p1	5.892	+	AK295222 TSC_hg19_v1_chr9_+_80912042 AK295310 NM_021154 NM_058179 BC004863 BC018129 BC000971 BC001618 AK025460 BC016645 AY131232 AF113132 DQ894126 CU676192 CU677657 BT006840	-1274542	+	TSC_hg19_v1_chr9_+_80850990 NM_001098802 NM_032171 AK303457 AK022705 BC058931 BC128058	-1335570	+	AB463062 AF011496 AF329284 AF493896 AM392842 AM393393 AM393764 CU691228 L76256 BC075097 BC075096 U40038 BC057777 BC067850 BC069520 NM_002072	-1540416	-	TSC_hg19_v1_chr9_+_82186879 NM_007005	286	+	TSC_hg19_v1_chr9_+_82187539 BC036369 BC059405 AK057236	924	+	TSC_hg19_v1_chr9_+_82187610 AB033087 AK302709 AK296342 AB463316	1085	+	AK295222|PSAT1|29968|phosphoserine aminotransferase 1##AK295310|PSAT1|29968|phosphoserine aminotransferase 1##NM_021154|PSAT1|29968|phosphoserine aminotransferase 1##NM_058179|PSAT1|29968|phosphoserine aminotransferase 1##BC004863|PSAT1|29968|phosphoserine aminotransferase 1##BC018129|PSAT1|29968|phosphoserine aminotransferase 1##BC000971|PSAT1|29968|phosphoserine aminotransferase 1##AK025460|PSAT1|29968|phosphoserine aminotransferase 1##BC016645|PSAT1|29968|phosphoserine aminotransferase 1##AY131232|PSAT1|29968|phosphoserine aminotransferase 1##AF113132|PSAT1|29968|phosphoserine aminotransferase 1##DQ894126|PSAT1|29968|phosphoserine aminotransferase 1##BT006840|PSAT1|29968|phosphoserine aminotransferase 1##NM_001098802|CEP78|84131|centrosomal protein 78kDa##NM_032171|CEP78|84131|centrosomal protein 78kDa##AK303457|CEP78|84131|centrosomal protein 78kDa##AK022705|CEP78|84131|centrosomal protein 78kDa##BC058931|CEP78|84131|centrosomal protein 78kDa##BC128058|CEP78|84131|centrosomal protein 78kDa##AF011496|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AF329284|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AF493896|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM392842|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM393393|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM393764|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##L76256|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC075097|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC075096|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##U40038|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC057777|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC067850|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC069520|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##NM_002072|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##NM_007005|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC036369|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC059405|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK057236|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AB033087|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK302709|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK296342|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)	1.0324	denovo_WM_21:41:0.990
chr4	2845447	2845561	reg1000833.p1	5.888	+	AB000462 AB000463 NM_003023	-24964	+	TSC_hg19_v1_chr4_+_2819914 NM_001145856 U56386	-25591	+	TSC_hg19_v1_chr4_+_2813973 AK299996 AK304752	-31499	+	TSC_hg19_v1_chr4_+_2845589 NM_001119 NM_014189 NM_014190 NM_176801	75	+	TSC_hg19_v1_chr4_+_2845627 AH004561 S70310 BC013393 AK309186	162	+	AK025413 TSC_hg19_v1_chr4_+_2883766	38197	+	AB000462|SH3BP2|6452|SH3-domain binding protein 2##AB000463|SH3BP2|6452|SH3-domain binding protein 2##NM_003023|SH3BP2|6452|SH3-domain binding protein 2##NM_001145856|SH3BP2|6452|SH3-domain binding protein 2##U56386|SH3BP2|6452|SH3-domain binding protein 2##AK299996|SH3BP2|6452|SH3-domain binding protein 2##AK304752|SH3BP2|6452|SH3-domain binding protein 2##NM_001119|ADD1|118|adducin 1 (alpha)##NM_014189|ADD1|118|adducin 1 (alpha)##NM_014190|ADD1|118|adducin 1 (alpha)##NM_176801|ADD1|118|adducin 1 (alpha)##S70310|ADD1|118|adducin 1 (alpha)##BC013393|ADD1|118|adducin 1 (alpha)##AK309186|ADD1|118|adducin 1 (alpha)##AK025413|ADD1|118|adducin 1 (alpha)	0.151689	
chr2	62081713	62081826	reg1000813.p2	5.886	+	BC107162 BC107163 AK310908 AB527366 AM392542 AM392832 AM393518 TSC_hg19_v1_chr2_-_62081180 BX648834 BX649029 AK023367 BC036448 NM_001201543 NM_032180	-606	-	TSC_hg19_v1_chr2_-_61765394 BX647758 NM_003400	-316364	-	TSC_hg19_v1_chr2_-_61765383 BC032847 CR749840	-316390	-	U38846 EU446763 AB385091 TSC_hg19_v1_chr2_-_62115685 AK294665	33895	-	AK129860 TSC_hg19_v1_chr2_-_62115719 AK295330	33949	-	TSC_hg19_v1_chr2_-_62115733 BC106933 BC106934 AF026291	33965	-	BC107162|FAM161A|84140|family with sequence similarity 161, member A##BC107163|FAM161A|84140|family with sequence similarity 161, member A##AK310908|FAM161A|84140|family with sequence similarity 161, member A##AM392542|FAM161A|84140|family with sequence similarity 161, member A##AM392832|FAM161A|84140|family with sequence similarity 161, member A##AM393518|FAM161A|84140|family with sequence similarity 161, member A##BX648834|FAM161A|84140|family with sequence similarity 161, member A##BX649029|FAM161A|84140|family with sequence similarity 161, member A##AK023367|FAM161A|84140|family with sequence similarity 161, member A##BC036448|FAM161A|84140|family with sequence similarity 161, member A##NM_001201543|FAM161A|84140|family with sequence similarity 161, member A##NM_032180|FAM161A|84140|family with sequence similarity 161, member A##BX647758|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##NM_003400|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##BC032847|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##CR749840|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##U38846|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##EU446763|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK294665|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK129860|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK295330|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##BC106933|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##BC106934|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AF026291|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)	1.706369	denovo_WM_21:21:0.812	denovo_WM_21:-29:0.650	denovo_WM_21:-59:0.245
chr19	633617	633747	reg1000860.p1	5.880	+	TSC_hg19_v1_chr19_-_633564 BC070057 NM_005035	-82	-	TSC_hg19_v1_chr19_-_633538 AK225723 AK225865 BC098387 U75370	-139	-	TSC_hg19_v1_chr19_-_633520 AK307525 BC030829	-184	-	BC041334 BC137444 BC137445 BC144645 AY359084 AB021925 NM_020637	6219	+	BC025374 TSC_hg19_v1_chr19_-_663155	29474	-	TSC_hg19_v1_chr19_-_663185 AK000559	29493	-	BC070057|POLRMT|5442|polymerase (RNA) mitochondrial (DNA directed)##NM_005035|POLRMT|5442|polymerase (RNA) mitochondrial (DNA directed)##AK225723|POLRMT|5442|polymerase (RNA) mitochondrial (DNA directed)##AK225865|POLRMT|5442|polymerase (RNA) mitochondrial (DNA directed)##BC098387|POLRMT|5442|polymerase (RNA) mitochondrial (DNA directed)##U75370|POLRMT|5442|polymerase (RNA) mitochondrial (DNA directed)##AK307525|POLRMT|5442|polymerase (RNA) mitochondrial (DNA directed)##BC030829|POLRMT|5442|polymerase (RNA) mitochondrial (DNA directed)##BC137444|FGF22|27006|fibroblast growth factor 22##BC137445|FGF22|27006|fibroblast growth factor 22##AY359084|FGF22|27006|fibroblast growth factor 22##AB021925|FGF22|27006|fibroblast growth factor 22##NM_020637|FGF22|27006|fibroblast growth factor 22##BC025374|RNF126|55658|ring finger protein 126##AK000559|RNF126|55658|ring finger protein 126	0.990315	denovo_WM_21:2:0.990
chr12	121019175	121019290	reg1000850.p1	5.879	+	AK223206 TSC_hg19_v1_chr12_-_121019185 AK303144 AF070660 AF117232 AJ306296 BC012505 NM_015918 NM_198202	-44	-	AK094011 AK097807 TSC_hg19_v1_chr12_+_120972158 AK126274 AK301608 AB027196 BC016622 BC031596 BC101709 BC101715 BC143493 BT006974 CU677651 D87451 DQ890634 DQ893805	-46732	+	TSC_hg19_v1_chr12_+_120972153 NM_014868 AK315558	-47104	+	BC030201 NM_001033677	59189	+	AF169148 AF169149 NM_004276 NM_031205	69138	+	TSC_hg19_v1_chr12_+_121124951 NM_014730	105706	+	AK223206|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AK303144|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AF070660|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AF117232|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AJ306296|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##BC012505|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##NM_015918|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##NM_198202|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AK094011|RNF10|9921|ring finger protein 10##AK097807|RNF10|9921|ring finger protein 10##AK126274|RNF10|9921|ring finger protein 10##AK301608|RNF10|9921|ring finger protein 10##AB027196|RNF10|9921|ring finger protein 10##BC016622|RNF10|9921|ring finger protein 10##BC031596|RNF10|9921|ring finger protein 10##BC101709|RNF10|9921|ring finger protein 10##BC101715|RNF10|9921|ring finger protein 10##BC143493|RNF10|9921|ring finger protein 10##BT006974|RNF10|9921|ring finger protein 10##D87451|RNF10|9921|ring finger protein 10##DQ890634|RNF10|9921|ring finger protein 10##DQ893805|RNF10|9921|ring finger protein 10##NM_014868|RNF10|9921|ring finger protein 10##AK315558|RNF10|9921|ring finger protein 10##BC030201|CABP1|9478|calcium binding protein 1##NM_001033677|CABP1|9478|calcium binding protein 1##AF169148|CABP1|9478|calcium binding protein 1##AF169149|CABP1|9478|calcium binding protein 1##NM_004276|CABP1|9478|calcium binding protein 1##NM_031205|CABP1|9478|calcium binding protein 1##NM_014730|MLEC|9761|malectin	0.327462	denovo_WM_21:26:0.245
chr1	171750639	171750774	reg1000691.p1	5.878	+	AK092254 TSC_hg19_v1_chr1_+_171711293	-39419	+	BC005974 TSC_hg19_v1_chr1_-_171711206 AL035296 AK290441 AF044310 BC031264 BC007019 NM_001185127 NM_003762	-39471	-	AB528547 DQ892415 DQ895629 AF001620 FJ227302 FJ237046 FJ237047 NM_000261 U85257 D88214 BC029261 AK300924 AK300943 AK301297 AK315443 AK097310	-128906	-	NM_001007239 NM_014955 NM_015935 TSC_hg19_v1_chr1_+_171750799 AK304471 AK223493	74	+	TSC_hg19_v1_chr1_+_171750809 AK291740 AK027621	108	+	TSC_hg19_v1_chr1_+_171750834 AB242174 AF132936 AL049669 AK027552 AB242175	132	+	BC005974|VAMP4|8674|vesicle-associated membrane protein 4##AL035296|VAMP4|8674|vesicle-associated membrane protein 4##AK290441|VAMP4|8674|vesicle-associated membrane protein 4##AF044310|VAMP4|8674|vesicle-associated membrane protein 4##BC031264|VAMP4|8674|vesicle-associated membrane protein 4##BC007019|VAMP4|8674|vesicle-associated membrane protein 4##NM_001185127|VAMP4|8674|vesicle-associated membrane protein 4##NM_003762|VAMP4|8674|vesicle-associated membrane protein 4##DQ892415|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##DQ895629|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AF001620|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##FJ227302|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##FJ237046|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##FJ237047|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##NM_000261|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##U85257|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##D88214|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##BC029261|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK300924|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK300943|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK301297|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK315443|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK097310|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##NM_001007239|METTL13|51603|methyltransferase like 13##NM_014955|METTL13|51603|methyltransferase like 13##NM_015935|METTL13|51603|methyltransferase like 13##AK304471|METTL13|51603|methyltransferase like 13##AK223493|METTL13|51603|methyltransferase like 13##AK291740|METTL13|51603|methyltransferase like 13##AK027621|METTL13|51603|methyltransferase like 13##AB242174|METTL13|51603|methyltransferase like 13##AF132936|METTL13|51603|methyltransferase like 13##AL049669|METTL13|51603|methyltransferase like 13##AK027552|METTL13|51603|methyltransferase like 13##AB242175|METTL13|51603|methyltransferase like 13	0.556228	denovo_WM_21:14:0.445
chr6_apd_hap1	3460745	3460871	reg1000542.p1	5.878	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.391695	denovo_WM_21:-6:0.373
chr7	64467102	64467225	reg1000768.p1	5.875	+	TSC_hg19_v1_chr7_-_64467066 AK295189 AK097499 NM_001007253	-99	-	M55422 NM_015852	-15750	-	NM_021148 BC007078 BC019234 BC008386 BC063818 BC108740	-103504	+	TSC_hg19_v1_chr7_+_64498727 BX649060 BC071617	31543	+	TSC_hg19_v1_chr7_+_64601445 AK057766	134357	+	TSC_hg19_v1_chr7_+_64838761 BX647875 NM_007139 NM_152626 BC040594	371587	+	AK295189|ERV3-1|2086|endogenous retrovirus group 3, member 1##NM_001007253|ERV3-1|2086|endogenous retrovirus group 3, member 1##M55422|ZNF117|51351|zinc finger protein 117##NM_015852|ZNF117|51351|zinc finger protein 117##NM_021148|ZNF273|10793|zinc finger protein 273##BC007078|ZNF273|10793|zinc finger protein 273##BC019234|ZNF273|10793|zinc finger protein 273##BC008386|ZNF273|10793|zinc finger protein 273##BC063818|ZNF273|10793|zinc finger protein 273##BC108740|ZNF273|10793|zinc finger protein 273##BX649060|CCT6P3|643180|chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3##BC071617|CCT6P3|643180|chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3##AK057766|INTS4L1|285905|integrator complex subunit 4-like 1##BX647875|ZNF92|168374|zinc finger protein 92##NM_007139|ZNF92|168374|zinc finger protein 92##NM_152626|ZNF92|168374|zinc finger protein 92##BC040594|ZNF92|168374|zinc finger protein 92	0.858648	denovo_WM_21:-15:0.848
chr16	30597100	30597236	reg1000767.p1	5.871	+	TSC_hg19_v1_chr16_-_30597103 AK309511 EU446576 AK292465 BC040642 AK298848 AK056692 NM_152458	-193	-	NM_001024683 NM_145271	-13441	-	EU446577 TSC_hg19_v1_chr16_-_30583034 BC018997	-14146	-	AK310459 AB065282 BC014000 NM_138447 TSC_hg19_v1_chr16_-_30621684	24488	-	TSC_hg19_v1_chr16_+_30662098 CR936781 AK125716	64932	+	TSC_hg19_v1_chr16_+_30662286 BC010232 BC050677 NM_024031 BC011573 BC000119 AK074783	65097	+	AK309511|ZNF785|146540|zinc finger protein 785##EU446576|ZNF785|146540|zinc finger protein 785##AK292465|ZNF785|146540|zinc finger protein 785##BC040642|ZNF785|146540|zinc finger protein 785##AK298848|ZNF785|146540|zinc finger protein 785##AK056692|ZNF785|146540|zinc finger protein 785##NM_152458|ZNF785|146540|zinc finger protein 785##NM_001024683|ZNF688|146542|zinc finger protein 688##NM_145271|ZNF688|146542|zinc finger protein 688##EU446577|ZNF688|146542|zinc finger protein 688##BC018997|ZNF688|146542|zinc finger protein 688##AK310459|ZNF689|115509|zinc finger protein 689##AB065282|ZNF689|115509|zinc finger protein 689##BC014000|ZNF689|115509|zinc finger protein 689##NM_138447|ZNF689|115509|zinc finger protein 689##CR936781|PRR14|78994|proline rich 14##AK125716|PRR14|78994|proline rich 14##BC010232|PRR14|78994|proline rich 14##BC050677|PRR14|78994|proline rich 14##NM_024031|PRR14|78994|proline rich 14##BC011573|PRR14|78994|proline rich 14##BC000119|PRR14|78994|proline rich 14##AK074783|PRR14|78994|proline rich 14	0.452304	denovo_WM_21:-6:0.415
chr9	129676970	129677052	reg1000537.p1	5.871	+	TSC_hg19_v1_chr9_+_129622936 AB082524 NM_001099270	-54067	+	TSC_hg19_v1_chr9_+_129567318 NM_001135776 NM_014007 AF049907 AK026123 BC008828	-109701	+	NM_001174146 NM_001174147 NM_002316 AB587444 BC112120 BC113491 BC143801 AF057135 BC069601 CU686928 HQ258228 BC069588	-300250	+	TSC_hg19_v1_chr9_+_129677073 AB002349 NM_001190729 NM_001190730 NM_014636 BC033708 BC019329 AK299149 BC032372	93	+	AF221098 NM_001190728 AB385313 CU689706	47524	+	AK075026 TSC_hg19_v1_chr9_-_129870392	193341	-	AB082524|ZBTB34|403341|zinc finger and BTB domain containing 34##NM_001099270|ZBTB34|403341|zinc finger and BTB domain containing 34##NM_001135776|ZBTB43|23099|zinc finger and BTB domain containing 43##NM_014007|ZBTB43|23099|zinc finger and BTB domain containing 43##AF049907|ZBTB43|23099|zinc finger and BTB domain containing 43##AK026123|ZBTB43|23099|zinc finger and BTB domain containing 43##BC008828|ZBTB43|23099|zinc finger and BTB domain containing 43##NM_001174146|LMX1B|4010|LIM homeobox transcription factor 1, beta##NM_001174147|LMX1B|4010|LIM homeobox transcription factor 1, beta##NM_002316|LMX1B|4010|LIM homeobox transcription factor 1, beta##BC112120|LMX1B|4010|LIM homeobox transcription factor 1, beta##BC113491|LMX1B|4010|LIM homeobox transcription factor 1, beta##BC143801|LMX1B|4010|LIM homeobox transcription factor 1, beta##AF057135|LMX1B|4010|LIM homeobox transcription factor 1, beta##BC069601|LMX1B|4010|LIM homeobox transcription factor 1, beta##HQ258228|LMX1B|4010|LIM homeobox transcription factor 1, beta##BC069588|LMX1B|4010|LIM homeobox transcription factor 1, beta##AB002349|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##NM_001190729|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##NM_001190730|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##NM_014636|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##BC033708|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##BC019329|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##AK299149|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##BC032372|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##AF221098|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##NM_001190728|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##AK075026|ANGPTL2|23452|angiopoietin-like 2	0.772381	denovo_WM_21:27:0.772
chr11	94801836	94802003	reg1001007.p2	5.868	+	TSC_hg19_v1_chr11_+_94800406 AF031166	-1511	+	TSC_hg19_v1_chr11_+_94800329 BC057783 BC006181	-1575	+	NM_032102 AK309776 AK312514 AK023379 TSC_hg19_v1_chr11_+_94800281	-1751	+	TSC_hg19_v1_chr11_+_94823009 AK291673 NM_015036 BC026191 AB020637 BC071171 AB385387	21093	+	BC017296 AK096300 NM_144665 TSC_hg19_v1_chr11_-_94964367	162385	-	CU693100 AM392906 DQ891214 DQ894397 TSC_hg19_v1_chr11_-_95522648 BX647586	720732	-	AF031166|SRSF8|10929|serine/arginine-rich splicing factor 8##BC057783|SRSF8|10929|serine/arginine-rich splicing factor 8##NM_032102|SRSF8|10929|serine/arginine-rich splicing factor 8##AK312514|SRSF8|10929|serine/arginine-rich splicing factor 8##AK023379|SRSF8|10929|serine/arginine-rich splicing factor 8##AK291673|ENDOD1|23052|endonuclease domain containing 1##NM_015036|ENDOD1|23052|endonuclease domain containing 1##BC026191|ENDOD1|23052|endonuclease domain containing 1##AB020637|ENDOD1|23052|endonuclease domain containing 1##BC071171|ENDOD1|23052|endonuclease domain containing 1##BC017296|SESN3|143686|sestrin 3##AK096300|SESN3|143686|sestrin 3##NM_144665|SESN3|143686|sestrin 3##AM392906|FAM76B|143684|family with sequence similarity 76, member B##DQ891214|FAM76B|143684|family with sequence similarity 76, member B##DQ894397|FAM76B|143684|family with sequence similarity 76, member B##BX647586|FAM76B|143684|family with sequence similarity 76, member B	0.080621	
chr1	33937986	33938158	reg1000799.p1	5.864	+	TSC_hg19_v1_chr1_-_33896604 AJ242730	-41464	-	AB527842 AJ419231 BC130630 BC144121 NM_198040	-96905	-	NM_004427 TSC_hg19_v1_chr1_-_33815501 U89278	-122564	-	NM_145238 AK131405 TSC_hg19_v1_chr1_+_33938251 AK290195 BC008827 BC011404	179	+	AK097707 NM_145205	388003	+	TSC_hg19_v1_chr1_-_34630856 AB212622	692793	-	AJ242730|PHC2|1912|polyhomeotic homolog 2 (Drosophila)##AJ419231|PHC2|1912|polyhomeotic homolog 2 (Drosophila)##BC130630|PHC2|1912|polyhomeotic homolog 2 (Drosophila)##BC144121|PHC2|1912|polyhomeotic homolog 2 (Drosophila)##NM_198040|PHC2|1912|polyhomeotic homolog 2 (Drosophila)##NM_004427|PHC2|1912|polyhomeotic homolog 2 (Drosophila)##U89278|PHC2|1912|polyhomeotic homolog 2 (Drosophila)##NM_145238|ZSCAN20|7579|zinc finger and SCAN domain containing 20##AK131405|ZSCAN20|7579|zinc finger and SCAN domain containing 20##AK290195|ZSCAN20|7579|zinc finger and SCAN domain containing 20##BC008827|ZSCAN20|7579|zinc finger and SCAN domain containing 20##BC011404|ZSCAN20|7579|zinc finger and SCAN domain containing 20##AK097707|HMGB4|127540|high mobility group box 4##NM_145205|HMGB4|127540|high mobility group box 4##AB212622|CSMD2|114784|CUB and Sushi multiple domains 2	0.323103	
chr17	2952260	2952397	reg1000701.p1	5.859	+	AJ628446 AJ628447 NM_001100398 NM_015085 TSC_hg19_v1_chr17_+_2699761 CR627427 BC140870 BC140871	-252575	+	AK124640 TSC_hg19_v1_chr17_+_2680496	-271905	+	NM_015229 TSC_hg19_v1_chr17_-_2615039	-337341	-	BC106876 NM_014566 AB529301	14599	-	AB529300 BC069552 BC106735 BC106736 NM_002548	43961	-	BC069379 NM_003555 BC095520 AB529303	78573	-	AJ628446|RAP1GAP2|23108|RAP1 GTPase activating protein 2##AJ628447|RAP1GAP2|23108|RAP1 GTPase activating protein 2##NM_001100398|RAP1GAP2|23108|RAP1 GTPase activating protein 2##NM_015085|RAP1GAP2|23108|RAP1 GTPase activating protein 2##CR627427|RAP1GAP2|23108|RAP1 GTPase activating protein 2##BC140870|RAP1GAP2|23108|RAP1 GTPase activating protein 2##BC140871|RAP1GAP2|23108|RAP1 GTPase activating protein 2##AK124640|RAP1GAP2|23108|RAP1 GTPase activating protein 2##NM_015229|KIAA0664|23277|KIAA0664##BC106876|OR1D5|8386|olfactory receptor, family 1, subfamily D, member 5##NM_014566|OR1D5|8386|olfactory receptor, family 1, subfamily D, member 5##BC069552|OR1D2|4991|olfactory receptor, family 1, subfamily D, member 2##BC106735|OR1D2|4991|olfactory receptor, family 1, subfamily D, member 2##BC106736|OR1D2|4991|olfactory receptor, family 1, subfamily D, member 2##NM_002548|OR1D2|4991|olfactory receptor, family 1, subfamily D, member 2##BC069379|OR1G1|8390|olfactory receptor, family 1, subfamily G, member 1##NM_003555|OR1G1|8390|olfactory receptor, family 1, subfamily G, member 1##BC095520|OR1G1|8390|olfactory receptor, family 1, subfamily G, member 1	2.829807	denovo_WM_21:-43:0.894	denovo_WM_21:56:0.917	denovo_WM_21:97:0.949
chr1	4363140	4363284	reg1000807.p1	5.857	+	TSC_hg19_v1_chr1_-_3816823 BC067302 AK125092 AK289493 NM_207356	-546367	-	TSC_hg19_v1_chr1_-_3816816 CU688284 BC035643 BC047611	-546449	-	BC048797 NM_004402	-589368	+	TSC_hg19_v1_chr1_+_4714668 AF175409	351517	+	AY282806 NM_001042478 NM_018836	351892	+	NM_001199861	1689145	+	BC067302|C1orf174|339448|chromosome 1 open reading frame 174##AK125092|C1orf174|339448|chromosome 1 open reading frame 174##AK289493|C1orf174|339448|chromosome 1 open reading frame 174##NM_207356|C1orf174|339448|chromosome 1 open reading frame 174##BC035643|C1orf174|339448|chromosome 1 open reading frame 174##BC047611|C1orf174|339448|chromosome 1 open reading frame 174##BC048797|DFFB|1677|DNA fragmentation factor, 40kDa, beta polypeptide (caspase-activated DNase)##NM_004402|DFFB|1677|DNA fragmentation factor, 40kDa, beta polypeptide (caspase-activated DNase)##AF175409|AJAP1|55966|adherens junctions associated protein 1##AY282806|AJAP1|55966|adherens junctions associated protein 1##NM_001042478|AJAP1|55966|adherens junctions associated protein 1##NM_018836|AJAP1|55966|adherens junctions associated protein 1##NM_001199861|KCNAB2|8514|potassium voltage-gated channel, shaker-related subfamily, beta member 2	0.0	
chr9	99180718	99180823	reg1000590.p1	5.843	+	TSC_hg19_v1_chr9_-_99180672 AY554164 AY554165 NM_153695	-86	-	BC126141 TSC_hg19_v1_chr9_-_99180642	-174	-	NM_007001 TSC_hg19_v1_chr9_-_99145994 BC113579	-34750	-	TSC_hg19_v1_chr9_+_99212450 NM_014282 BC018788 AF241831 AB463760	31699	+	TSC_hg19_v1_chr9_-_99329110 AK126388 NM_001077181	148377	-	TSC_hg19_v1_chr9_-_99382126 AF064104 AF064105 NM_003671 NM_033331	201350	-	AY554164|ZNF367|195828|zinc finger protein 367##AY554165|ZNF367|195828|zinc finger protein 367##NM_153695|ZNF367|195828|zinc finger protein 367##BC126141|ZNF367|195828|zinc finger protein 367##NM_007001|SLC35D2|11046|solute carrier family 35, member D2##BC113579|SLC35D2|11046|solute carrier family 35, member D2##NM_014282|HABP4|22927|hyaluronan binding protein 4##BC018788|HABP4|22927|hyaluronan binding protein 4##AF241831|HABP4|22927|hyaluronan binding protein 4##AK126388|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)##NM_001077181|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)##AF064104|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)##AF064105|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)##NM_003671|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)##NM_033331|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	0.568402	denovo_WM_21:-10:0.388
chr5	108745759	108745873	reg1000855.p1	5.837	+	BC030826 AB007898 TSC_hg19_v1_chr5_-_108745619 AK291759 NM_014819	-195	-	TSC_hg19_v1_chr5_+_108084650 AK299855 BC058030	-661144	+	AK293376 J03358 NM_005246 AK296874	-662254	+	TSC_hg19_v1_chr5_+_109025072 BC031659	279248	+	TSC_hg19_v1_chr5_+_109025096 BC111062	279281	+	TSC_hg19_v1_chr5_+_109025138 NM_002372	279329	+	BC030826|PJA2|9867|praja ring finger 2##AB007898|PJA2|9867|praja ring finger 2##AK291759|PJA2|9867|praja ring finger 2##NM_014819|PJA2|9867|praja ring finger 2##AK299855|FER|2241|fer (fps/fes related) tyrosine kinase##BC058030|FER|2241|fer (fps/fes related) tyrosine kinase##AK293376|FER|2241|fer (fps/fes related) tyrosine kinase##J03358|FER|2241|fer (fps/fes related) tyrosine kinase##NM_005246|FER|2241|fer (fps/fes related) tyrosine kinase##AK296874|FER|2241|fer (fps/fes related) tyrosine kinase##BC031659|MAN2A1|4124|mannosidase, alpha, class 2A, member 1##NM_002372|MAN2A1|4124|mannosidase, alpha, class 2A, member 1	0.20961	denovo_WM_21:10:0.210
chr17	47492293	47492455	reg1000826.p1	5.835	+	TSC_hg19_v1_chr17_-_47492243 S85655 BC013401 AK307767 AK223181 AK290766 AK302258 AK312649 NM_002634	-126	-	BC095460 TSC_hg19_v1_chr17_-_47492215	-159	-	CR933680 TSC_hg19_v1_chr17_-_47439487 BC034987 AK292667 NM_001145365 AB023141 BC152440 NM_014897	-52794	-	TSC_hg19_v1_chr17_+_47572654 AK313654 NM_002507 BC050309 M14764	80314	+	TSC_hg19_v1_chr17_+_47653192 AL834282 NM_007225	160862	+	TSC_hg19_v1_chr17_+_47653475 BC022541 AK308928 AY358526 AB385434	161153	+	S85655|PHB|5245|prohibitin##BC013401|PHB|5245|prohibitin##AK307767|PHB|5245|prohibitin##AK223181|PHB|5245|prohibitin##AK290766|PHB|5245|prohibitin##AK302258|PHB|5245|prohibitin##AK312649|PHB|5245|prohibitin##NM_002634|PHB|5245|prohibitin##BC095460|PHB|5245|prohibitin##CR933680|ZNF652|22834|zinc finger protein 652##BC034987|ZNF652|22834|zinc finger protein 652##AK292667|ZNF652|22834|zinc finger protein 652##NM_001145365|ZNF652|22834|zinc finger protein 652##AB023141|ZNF652|22834|zinc finger protein 652##BC152440|ZNF652|22834|zinc finger protein 652##NM_014897|ZNF652|22834|zinc finger protein 652##AK313654|NGFR|4804|nerve growth factor receptor##NM_002507|NGFR|4804|nerve growth factor receptor##BC050309|NGFR|4804|nerve growth factor receptor##M14764|NGFR|4804|nerve growth factor receptor##AL834282|NXPH3|11248|neurexophilin 3##NM_007225|NXPH3|11248|neurexophilin 3##BC022541|NXPH3|11248|neurexophilin 3##AK308928|NXPH3|11248|neurexophilin 3##AY358526|NXPH3|11248|neurexophilin 3	0.272032	denovo_WM_21:-82:0.272
chr1	28585784	28585969	reg1000935.p1	5.832	+	TSC_hg19_v1_chr1_+_28562634 NM_016311 NM_178190 NM_178191 AK316600 BC009677 AK000934 AB029042 BT009849 CR457097 EU832478 EU832558 BC017562 BC004955	-23227	+	TSC_hg19_v1_chr1_-_28559538 BC033159 AK300797 AF083190 BX538122 CR456900 NM_014280	-26345	-	S52624 AK292053 NM_001164721 NM_001164722	-65464	-	TSC_hg19_v1_chr1_+_28586034 NM_031459 BC013304 AY123223 BC033719 AL136551 AK315710 DQ892827 DQ896073 EU831582 EU831667 AB529110 CU680558	282	+	NM_001127350 NM_017638 AK296130 AK000052 AB107222 BC002694 TSC_hg19_v1_chr1_+_28655576	69671	+	TSC_hg19_v1_chr1_+_28696251 NM_001048183 CR749449 AK025436 BC029266 BC016152 BC068508	110349	+	NM_016311|ATPIF1|93974|ATPase inhibitory factor 1##NM_178190|ATPIF1|93974|ATPase inhibitory factor 1##NM_178191|ATPIF1|93974|ATPase inhibitory factor 1##AK316600|ATPIF1|93974|ATPase inhibitory factor 1##BC009677|ATPIF1|93974|ATPase inhibitory factor 1##AK000934|ATPIF1|93974|ATPase inhibitory factor 1##AB029042|ATPIF1|93974|ATPase inhibitory factor 1##BT009849|ATPIF1|93974|ATPase inhibitory factor 1##CR457097|ATPIF1|93974|ATPase inhibitory factor 1##EU832478|ATPIF1|93974|ATPase inhibitory factor 1##EU832558|ATPIF1|93974|ATPase inhibitory factor 1##BC017562|ATPIF1|93974|ATPase inhibitory factor 1##BC004955|ATPIF1|93974|ATPase inhibitory factor 1##BC033159|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##AK300797|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##AF083190|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##BX538122|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##CR456900|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##NM_014280|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##S52624|PTAFR|5724|platelet-activating factor receptor##AK292053|PTAFR|5724|platelet-activating factor receptor##NM_001164721|PTAFR|5724|platelet-activating factor receptor##NM_001164722|PTAFR|5724|platelet-activating factor receptor##NM_031459|SESN2|83667|sestrin 2##BC013304|SESN2|83667|sestrin 2##AY123223|SESN2|83667|sestrin 2##BC033719|SESN2|83667|sestrin 2##AL136551|SESN2|83667|sestrin 2##AK315710|SESN2|83667|sestrin 2##DQ892827|SESN2|83667|sestrin 2##DQ896073|SESN2|83667|sestrin 2##EU831582|SESN2|83667|sestrin 2##EU831667|SESN2|83667|sestrin 2##NM_001127350|MED18|54797|mediator complex subunit 18##NM_017638|MED18|54797|mediator complex subunit 18##AK296130|MED18|54797|mediator complex subunit 18##AK000052|MED18|54797|mediator complex subunit 18##AB107222|MED18|54797|mediator complex subunit 18##BC002694|MED18|54797|mediator complex subunit 18##NM_001048183|PHACTR4|65979|phosphatase and actin regulator 4##CR749449|PHACTR4|65979|phosphatase and actin regulator 4##AK025436|PHACTR4|65979|phosphatase and actin regulator 4##BC029266|PHACTR4|65979|phosphatase and actin regulator 4##BC016152|PHACTR4|65979|phosphatase and actin regulator 4##BC068508|PHACTR4|65979|phosphatase and actin regulator 4	1.331159	denovo_WM_21:2:0.337	denovo_WM_21:67:0.994
chr19	57922403	57922537	reg1000808.p2	5.831	+	TSC_hg19_v1_chr19_+_57901344 AK299069 EU446719	-21072	+	TSC_hg19_v1_chr19_+_57901221 BC030788 NM_001172773 NM_152909 AK057494	-21219	+	AF058918 AF291676 AK055662 NM_173631 BC008889 BC032809 BC042681 AL832545 BC064426 AK291464	-47554	+	TSC_hg19_v1_chr19_+_57922528 NM_006959 AK127948 AK098183	61	+	TSC_hg19_v1_chr19_+_57946689 NM_001023561 AK122794	24219	+	NM_020633	45636	-	AK299069|ZNF548|147694|zinc finger protein 548##EU446719|ZNF17|7565|zinc finger protein 17##BC030788|ZNF548|147694|zinc finger protein 548##NM_001172773|ZNF548|147694|zinc finger protein 548##NM_152909|ZNF548|147694|zinc finger protein 548##AK057494|ZNF548|147694|zinc finger protein 548##AF058918|TRAPPC2P1|10597|trafficking protein particle complex 2 pseudogene 1##AF291676|TRAPPC2P1|10597|trafficking protein particle complex 2 pseudogene 1##AK055662|ZNF547|284306|zinc finger protein 547##NM_173631|ZNF547|284306|zinc finger protein 547##BC008889|TRAPPC2P1|10597|trafficking protein particle complex 2 pseudogene 1##BC032809|TRAPPC2P1|10597|trafficking protein particle complex 2 pseudogene 1##BC042681|ZNF547|284306|zinc finger protein 547##AL832545|ZNF547|284306|zinc finger protein 547##AK291464|ZNF547|284306|zinc finger protein 547##NM_006959|ZNF17|7565|zinc finger protein 17##AK127948|ZNF17|7565|zinc finger protein 17##AK098183|ZNF17|7565|zinc finger protein 17##NM_001023561|ZNF749|388567|zinc finger protein 749##AK122794|ZNF749|388567|zinc finger protein 749##NM_020633|VN1R1|57191|vomeronasal 1 receptor 1	0.635076	denovo_WM_21:0:0.635
chr19	36139029	36139187	reg1000954.p1	5.826	+	NM_014209 AK097439 BC040908	-6438	+	TSC_hg19_v1_chr19_+_36119959 BC002868 BC004204 NM_024321 AK301669 AB384666 CU678262	-19102	+	TSC_hg19_v1_chr19_+_36119937 BC031682	-19166	+	NM_001863 BC001015 TSC_hg19_v1_chr19_+_36139210	59	+	TSC_hg19_v1_chr19_+_36139222 AK312140	116	+	TSC_hg19_v1_chr19_+_36139253 D28426 BC002478 X54473 X13923	144	+	NM_014209|ETV2|2116|ets variant 2##AK097439|ETV2|2116|ets variant 2##BC040908|ETV2|2116|ets variant 2##BC002868|RBM42|79171|RNA binding motif protein 42##BC004204|RBM42|79171|RNA binding motif protein 42##NM_024321|RBM42|79171|RNA binding motif protein 42##AK301669|RBM42|79171|RNA binding motif protein 42##BC031682|RBM42|79171|RNA binding motif protein 42##NM_001863|COX6B1|1340|cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous)##BC001015|COX6B1|1340|cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous)##AK312140|COX6B1|1340|cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous)##D28426|COX6B1|1340|cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous)##BC002478|COX6B1|1340|cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous)##X54473|COX6B1|1340|cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous)##X13923|COX6B1|1340|cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous)	0.0	
chr22	19467304	19467433	reg1000712.p2	5.824	+	TSC_hg19_v1_chr22_-_19466726 NM_001035247 NM_005659	-632	-	TSC_hg19_v1_chr22_-_19466712 AK310950	-655	-	CR456607 TSC_hg19_v1_chr22_-_19466707 AY101594 U64444 BC001049 BC005087 AK315998 AK225877 BX648483 AK304734 AK308786	-703	-	AK293123 AK303274 NM_001178010 NM_001178011 NM_003504 TSC_hg19_v1_chr22_+_19467423 AY358971 BC006232 BC010022 AK293338 AF081535 AJ223728	70	+	AF053074 TSC_hg19_v1_chr22_+_19467483 AK302590 AF062495 CT841513 AB587488 BT006792 CU012976 CU013264 CU679577 DQ890621 DQ892651 DQ893790 DQ895890	111	+	BT007254 CU012981 CU013269 AB528106 AF000959 AK222466 BC002404 BC019290 BC032363 TSC_hg19_v1_chr22_-_19511925	44487	-	NM_001035247|UFD1L|7353|ubiquitin fusion degradation 1 like (yeast)##NM_005659|UFD1L|7353|ubiquitin fusion degradation 1 like (yeast)##AK310950|UFD1L|7353|ubiquitin fusion degradation 1 like (yeast)##CR456607|UFD1L|7353|ubiquitin fusion degradation 1 like (yeast)##AY101594|UFD1L|7353|ubiquitin fusion degradation 1 like (yeast)##U64444|UFD1L|7353|ubiquitin fusion degradation 1 like (yeast)##BC001049|UFD1L|7353|ubiquitin fusion degradation 1 like (yeast)##BC005087|UFD1L|7353|ubiquitin fusion degradation 1 like (yeast)##AK315998|UFD1L|7353|ubiquitin fusion degradation 1 like (yeast)##AK225877|UFD1L|7353|ubiquitin fusion degradation 1 like (yeast)##BX648483|UFD1L|7353|ubiquitin fusion degradation 1 like (yeast)##AK304734|UFD1L|7353|ubiquitin fusion degradation 1 like (yeast)##AK308786|UFD1L|7353|ubiquitin fusion degradation 1 like (yeast)##AK293123|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##AK303274|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##NM_001178010|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##NM_001178011|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##NM_003504|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##AY358971|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##BC006232|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##BC010022|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##AK293338|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##AF081535|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##AJ223728|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##AF053074|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##AK302590|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##AF062495|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##CT841513|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##BT006792|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##CU012976|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##CU013264|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##DQ890621|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##DQ892651|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##DQ893790|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##DQ895890|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##BT007254|CLDN5|7122|claudin 5##CU012981|CLDN5|7122|claudin 5##CU013269|CLDN5|7122|claudin 5##AF000959|CLDN5|7122|claudin 5##AK222466|CLDN5|7122|claudin 5##BC002404|CLDN5|7122|claudin 5##BC019290|CLDN5|7122|claudin 5##BC032363|CLDN5|7122|claudin 5	1.165362	denovo_WM_21:-23:0.210	denovo_WM_21:34:0.956
chr22	41032720	41032865	reg1000672.p1	5.820	+	TSC_hg19_v1_chr22_-_41032716 BC115039 NM_020831 AF448806 AB037859 BC064620 AJ297258	-88	-	TSC_hg19_v1_chr22_-_41032681 AF368061	-139	-	TSC_hg19_v1_chr22_-_40859427 AJ297257	-173362	-	AK314857 AF490537 NM_005297 BC001736 BC021146 AY745811 AY747629 CR456497 AB063174 CU013094 CU013382 AB463112 AY562945 BT006725 DQ893603 DQ895065	42429	+	AB528234 CU013178 CU013466 CU675207 DQ893138 DQ896422 AK298215 AK300553 CR456577 BC012998 BX647991 AK292924 BC005957 BC024741 TSC_hg19_v1_chr22_-_41215380 BC039064 Y12860 NM_006358	182535	-	CU013186 CU013474 BC107120 BC101206 BC101207 BC101208 BC107148 BC139724 AK316155 AY513286 BC071629 BC121107 BC121108 U17714 U28918 AY826824 AY826825 TSC_hg19_v1_chr22_-_41252629 AK312399 BC052982	219797	-	BC115039|MKL1|57591|megakaryoblastic leukemia (translocation) 1##NM_020831|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AF448806|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AB037859|MKL1|57591|megakaryoblastic leukemia (translocation) 1##BC064620|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AJ297258|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AF368061|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AJ297257|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AK314857|MCHR1|2847|melanin-concentrating hormone receptor 1##AF490537|MCHR1|2847|melanin-concentrating hormone receptor 1##NM_005297|MCHR1|2847|melanin-concentrating hormone receptor 1##BC001736|MCHR1|2847|melanin-concentrating hormone receptor 1##BC021146|MCHR1|2847|melanin-concentrating hormone receptor 1##AY745811|MCHR1|2847|melanin-concentrating hormone receptor 1##AY747629|MCHR1|2847|melanin-concentrating hormone receptor 1##CR456497|MCHR1|2847|melanin-concentrating hormone receptor 1##AB063174|MCHR1|2847|melanin-concentrating hormone receptor 1##CU013094|MCHR1|2847|melanin-concentrating hormone receptor 1##CU013382|MCHR1|2847|melanin-concentrating hormone receptor 1##AY562945|MCHR1|2847|melanin-concentrating hormone receptor 1##BT006725|MCHR1|2847|melanin-concentrating hormone receptor 1##DQ893603|MCHR1|2847|melanin-concentrating hormone receptor 1##DQ895065|MCHR1|2847|melanin-concentrating hormone receptor 1##CU013178|SLC25A17|10478|solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17##CU013466|SLC25A17|10478|solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17##DQ893138|SLC25A17|10478|solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17##DQ896422|SLC25A17|10478|solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17##AK298215|SLC25A17|10478|solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17##AK300553|SLC25A17|10478|solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17##CR456577|SLC25A17|10478|solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17##BC012998|SLC25A17|10478|solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17##BX647991|SLC25A17|10478|solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17##AK292924|SLC25A17|10478|solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17##BC005957|SLC25A17|10478|solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17##BC024741|SLC25A17|10478|solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17##BC039064|SLC25A17|10478|solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17##Y12860|SLC25A17|10478|solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17##NM_006358|SLC25A17|10478|solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17##CU013186|ST13|6767|suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)##CU013474|ST13|6767|suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)##BC101206|ST13|6767|suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)##BC101207|ST13|6767|suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)##BC101208|ST13|6767|suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)##BC107148|ST13|6767|suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)##BC139724|ST13|6767|suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)##AK316155|ST13|6767|suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)##AY513286|ST13|6767|suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)##BC071629|ST13|6767|suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)##BC121107|ST13|6767|suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)##BC121108|ST13|6767|suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)##U17714|ST13|6767|suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)##U28918|ST13|6767|suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)##AY826824|ST13|6767|suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)##AY826825|ST13|6767|suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)##AK312399|ST13|6767|suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)##BC052982|ST13|6767|suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)	0.993855	denovo_WM_21:-3:0.994
chr2	111435652	111435782	reg1000721.p1	5.813	+	AF043294 BC017038 BC028201 TSC_hg19_v1_chr2_-_111435641 AF047471 AF046078 AF053305 AK291221 AK023540 AK225317 AK302418 NM_004336	-74	-	AL136868 NM_001037866 NM_001123363 NM_032260	-99409	-	NM_005054 U64675	-101040	-	TSC_hg19_v1_chr2_+_111435820 BC040607	105	+	AK300513 NM_001142807 BC022268	54462	+	TSC_hg19_v1_chr2_+_111878490 AK290377 AK291269 NM_001204106 NM_001204107 NM_001204108 NM_001204109 NM_001204110 NM_001204111 NM_001204112 NM_001204113 NM_006538 NM_138621 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_207002 NM_207003 BC033694	442770	+	AF043294|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##BC017038|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##BC028201|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF047471|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF046078|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF053305|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK291221|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK023540|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK225317|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK302418|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##NM_004336|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AL136868|RGPD5|84220|RANBP2-like and GRIP domain containing 5##NM_001037866|RGPD6|729540|RANBP2-like and GRIP domain containing 6##NM_001123363|RGPD6|729540|RANBP2-like and GRIP domain containing 6##NM_032260|RGPD5|84220|RANBP2-like and GRIP domain containing 5##NM_005054|RGPD5|84220|RANBP2-like and GRIP domain containing 5##U64675|RGPD5|84220|RANBP2-like and GRIP domain containing 5##AK300513|ACOXL|55289|acyl-CoA oxidase-like##NM_001142807|ACOXL|55289|acyl-CoA oxidase-like##BC022268|ACOXL|55289|acyl-CoA oxidase-like##AK290377|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK291269|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204106|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204107|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204108|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204109|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204110|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204111|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204112|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204113|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_006538|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138621|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138622|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138623|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138624|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138625|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138626|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138627|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207002|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207003|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC033694|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)	0.698959	denovo_WM_21:1:0.634
chr2	96874560	96874699	reg1001194.p1	5.813	+	TSC_hg19_v1_chr2_-_96874588 NM_020151	-31	-	AF270647 TSC_hg19_v1_chr2_-_96874561 BC012774 BC014076 BC012793 BC007894 BC009998 BC032106 BC014274 BC003028 BC008894 BC013279	-95	-	TSC_hg19_v1_chr2_+_96874144 AK311432	-475	+	BC101730 BC101732 NM_001037228	31347	+	TSC_hg19_v1_chr2_-_96931700 BC039892	57058	-	TSC_hg19_v1_chr2_-_96931736 AX775835 BC028575 AK000514 AK293276	57100	-	NM_020151|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##AF270647|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC012774|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC014076|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC012793|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC007894|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC009998|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC032106|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC014274|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC003028|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC008894|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC013279|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC101730|LOC285033|285033|uncharacterized LOC285033##BC101732|LOC285033|285033|uncharacterized LOC285033##NM_001037228|LOC285033|285033|uncharacterized LOC285033##BC039892|TMEM127|55654|transmembrane protein 127##BC028575|TMEM127|55654|transmembrane protein 127##AK000514|TMEM127|55654|transmembrane protein 127##AK293276|TMEM127|55654|transmembrane protein 127	0.2061	denovo_WM_21:15:0.206
chr21	44394654	44394751	reg1000565.p2	5.809	+	TSC_hg19_v1_chr21_+_44394671 AY142115 AY196965 NM_004571 BC000735	-48	+	TSC_hg19_v1_chr21_+_44313422 NM_001001503 NM_021075 BC054016 BC021217 AK308228 AK289586 BC033766 CU676876 CU689730 CR542174 CR542190	-81301	+	TSC_hg19_v1_chr21_-_44299690 BC001074 NM_018669 NM_033661 AK298015	-95018	-	TSC_hg19_v1_chr21_+_44394747 Y13613 AK294794 AK222892 U68727	37	+	TSC_hg19_v1_chr21_-_44495940 BC000440 X82166 BC011381 AK313691 L14577 BC010242 NM_000071	101264	-	L19501 BC007257 NM_001178008 NM_001178009	101745	-	AY142115|PKNOX1|5316|PBX/knotted 1 homeobox 1##AY196965|PKNOX1|5316|PBX/knotted 1 homeobox 1##NM_004571|PKNOX1|5316|PBX/knotted 1 homeobox 1##BC000735|PKNOX1|5316|PBX/knotted 1 homeobox 1##NM_001001503|NDUFV3|4731|NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa##NM_021075|NDUFV3|4731|NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa##BC054016|NDUFV3|4731|NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa##BC021217|NDUFV3|4731|NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa##AK308228|NDUFV3|4731|NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa##AK289586|NDUFV3|4731|NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa##BC033766|NDUFV3|4731|NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa##CR542174|NDUFV3|4731|NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa##CR542190|NDUFV3|4731|NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa##BC001074|WDR4|10785|WD repeat domain 4##NM_018669|WDR4|10785|WD repeat domain 4##NM_033661|WDR4|10785|WD repeat domain 4##AK298015|WDR4|10785|WD repeat domain 4##Y13613|PKNOX1|5316|PBX/knotted 1 homeobox 1##AK294794|PKNOX1|5316|PBX/knotted 1 homeobox 1##AK222892|PKNOX1|5316|PBX/knotted 1 homeobox 1##U68727|PKNOX1|5316|PBX/knotted 1 homeobox 1##BC000440|CBS|875|cystathionine-beta-synthase##X82166|CBS|875|cystathionine-beta-synthase##BC011381|CBS|875|cystathionine-beta-synthase##AK313691|CBS|875|cystathionine-beta-synthase##L14577|CBS|875|cystathionine-beta-synthase##BC010242|CBS|875|cystathionine-beta-synthase##NM_000071|CBS|875|cystathionine-beta-synthase##L19501|CBS|875|cystathionine-beta-synthase##BC007257|CBS|875|cystathionine-beta-synthase##NM_001178008|CBS|875|cystathionine-beta-synthase##NM_001178009|CBS|875|cystathionine-beta-synthase	0.0	
chr19	19932566	19932689	reg1000699.p2	5.802	+	TSC_hg19_v1_chr19_-_19932557 AL136548 BC018100 BC034920 AK122848 AK095575 NM_001099269 NM_001145404	-75	-	BC034236 AK289657 TSC_hg19_v1_chr19_-_19887212 BC037856	-45422	-	AB464375 BC136323 AB021644 AK074832 TSC_hg19_v1_chr19_-_19843919 AK125668 NM_021030	-88780	-	TSC_hg19_v1_chr19_+_19976658 BC053607 BC014148 NM_021047 BC065572 AK074757 BC125063 BC125064	44057	+	TSC_hg19_v1_chr19_+_20011754 NM_031218 BC020837 BC070372 BC107581 AK096342 BC058821 BC038096 BC136718 BC136719	79157	+	AK098164 NM_001077349	217411	-	AL136548|ZNF506|440515|zinc finger protein 506##BC018100|ZNF506|440515|zinc finger protein 506##BC034920|ZNF506|440515|zinc finger protein 506##AK122848|ZNF506|440515|zinc finger protein 506##AK095575|ZNF506|440515|zinc finger protein 506##NM_001099269|ZNF506|440515|zinc finger protein 506##NM_001145404|ZNF506|440515|zinc finger protein 506##BC034236|LOC284440|284440|uncharacterized LOC284440##AK289657|LOC284440|284440|uncharacterized LOC284440##BC037856|LOC284440|284440|uncharacterized LOC284440##BC136323|ZNF14|7561|zinc finger protein 14##AB021644|ZNF14|7561|zinc finger protein 14##AK074832|ZNF14|7561|zinc finger protein 14##NM_021030|ZNF14|7561|zinc finger protein 14##BC053607|ZNF253|56242|zinc finger protein 253##BC014148|ZNF253|56242|zinc finger protein 253##NM_021047|ZNF253|56242|zinc finger protein 253##BC065572|ZNF253|56242|zinc finger protein 253##AK074757|ZNF253|56242|zinc finger protein 253##BC125063|ZNF253|56242|zinc finger protein 253##BC125064|ZNF253|56242|zinc finger protein 253##NM_031218|ZNF93|81931|zinc finger protein 93##BC020837|ZNF93|81931|zinc finger protein 93##BC070372|ZNF93|81931|zinc finger protein 93##BC107581|ZNF93|81931|zinc finger protein 93##AK096342|ZNF93|81931|zinc finger protein 93##BC058821|ZNF93|81931|zinc finger protein 93##BC038096|ZNF93|81931|zinc finger protein 93##BC136718|ZNF93|81931|zinc finger protein 93##BC136719|ZNF93|81931|zinc finger protein 93##AK098164|ZNF682|91120|zinc finger protein 682##NM_001077349|ZNF682|91120|zinc finger protein 682	0.863324	denovo_WM_21:18:0.848
chr16	30669488	30669636	reg1000913.p1	5.798	+	TSC_hg19_v1_chr16_+_30662286 BC010232 BC050677 NM_024031 BC011573 BC000119 AK074783	-7297	+	TSC_hg19_v1_chr16_+_30662098 CR936781 AK125716	-7462	+	AK310459 AB065282 BC014000 NM_138447 TSC_hg19_v1_chr16_-_30621684	-47906	-	NM_001105079	6215	+	TSC_hg19_v1_chr16_+_30676113 AK298229	6554	+	AB621816 TSC_hg19_v1_chr16_+_30709918	40374	+	BC010232|PRR14|78994|proline rich 14##BC050677|PRR14|78994|proline rich 14##NM_024031|PRR14|78994|proline rich 14##BC011573|PRR14|78994|proline rich 14##BC000119|PRR14|78994|proline rich 14##AK074783|PRR14|78994|proline rich 14##CR936781|PRR14|78994|proline rich 14##AK125716|PRR14|78994|proline rich 14##AK310459|ZNF689|115509|zinc finger protein 689##AB065282|ZNF689|115509|zinc finger protein 689##BC014000|ZNF689|115509|zinc finger protein 689##NM_138447|ZNF689|115509|zinc finger protein 689##NM_001105079|FBRS|64319|fibrosin##AK298229|FBRS|64319|fibrosin	0.502039	denovo_WM_21:-61:0.502
chr19	20011620	20011763	reg1000760.p2	5.794	+	TSC_hg19_v1_chr19_+_19976658 BC053607 BC014148 NM_021047 BC065572 AK074757 BC125063 BC125064	-35007	+	TSC_hg19_v1_chr19_-_19932557 AL136548 BC018100 BC034920 AK122848 AK095575 NM_001099269 NM_001145404	-79139	-	BC034236 AK289657 TSC_hg19_v1_chr19_-_19887212 BC037856	-124486	-	TSC_hg19_v1_chr19_+_20011754 NM_031218 BC020837 BC070372 BC107581 AK096342 BC058821 BC038096 BC136718 BC136719	93	+	AK098164 NM_001077349	138347	-	AK027845 TSC_hg19_v1_chr19_-_20150315 AK096571 NM_033196	138606	-	BC053607|ZNF253|56242|zinc finger protein 253##BC014148|ZNF253|56242|zinc finger protein 253##NM_021047|ZNF253|56242|zinc finger protein 253##BC065572|ZNF253|56242|zinc finger protein 253##AK074757|ZNF253|56242|zinc finger protein 253##BC125063|ZNF253|56242|zinc finger protein 253##BC125064|ZNF253|56242|zinc finger protein 253##AL136548|ZNF506|440515|zinc finger protein 506##BC018100|ZNF506|440515|zinc finger protein 506##BC034920|ZNF506|440515|zinc finger protein 506##AK122848|ZNF506|440515|zinc finger protein 506##AK095575|ZNF506|440515|zinc finger protein 506##NM_001099269|ZNF506|440515|zinc finger protein 506##NM_001145404|ZNF506|440515|zinc finger protein 506##BC034236|LOC284440|284440|uncharacterized LOC284440##AK289657|LOC284440|284440|uncharacterized LOC284440##BC037856|LOC284440|284440|uncharacterized LOC284440##NM_031218|ZNF93|81931|zinc finger protein 93##BC020837|ZNF93|81931|zinc finger protein 93##BC070372|ZNF93|81931|zinc finger protein 93##BC107581|ZNF93|81931|zinc finger protein 93##AK096342|ZNF93|81931|zinc finger protein 93##BC058821|ZNF93|81931|zinc finger protein 93##BC038096|ZNF93|81931|zinc finger protein 93##BC136718|ZNF93|81931|zinc finger protein 93##BC136719|ZNF93|81931|zinc finger protein 93##AK098164|ZNF682|91120|zinc finger protein 682##NM_001077349|ZNF682|91120|zinc finger protein 682##AK027845|ZNF682|91120|zinc finger protein 682##AK096571|ZNF682|91120|zinc finger protein 682##NM_033196|ZNF682|91120|zinc finger protein 682	0.858649	denovo_WM_21:-16:0.848
chr6_mcf_hap5	3525781	3525910	reg1000587.p1	5.791	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.372645	denovo_WM_21:43:0.373
chr12	510646	510789	reg1000986.p1	5.788	+	TSC_hg19_v1_chr12_-_498451 AK301150 AK301273 AB209999 BC048307 BC053893 NM_001042603 BC092417	-12115	-	AK316029 NM_001130147 NM_001130148 AK308216	-12181	+	AB384668 TSC_hg19_v1_chr12_-_498418 AK225060 BC110916 S66431 AK307580 AK307689	-12377	-	NM_001130146 NM_032358 AK293165 TSC_hg19_v1_chr12_+_510809 AK027638	64	+	AB089940 NM_173593	58825	+	BC033133 TSC_hg19_v1_chr12_+_752201 AK311371	241461	+	AK301150|KDM5A|5927|lysine (K)-specific demethylase 5A##AK301273|KDM5A|5927|lysine (K)-specific demethylase 5A##AB209999|KDM5A|5927|lysine (K)-specific demethylase 5A##BC048307|KDM5A|5927|lysine (K)-specific demethylase 5A##BC053893|KDM5A|5927|lysine (K)-specific demethylase 5A##NM_001042603|KDM5A|5927|lysine (K)-specific demethylase 5A##BC092417|KDM5A|5927|lysine (K)-specific demethylase 5A##AK316029|CCDC77|84318|coiled-coil domain containing 77##NM_001130147|CCDC77|84318|coiled-coil domain containing 77##NM_001130148|CCDC77|84318|coiled-coil domain containing 77##AK308216|CCDC77|84318|coiled-coil domain containing 77##AK225060|KDM5A|5927|lysine (K)-specific demethylase 5A##BC110916|KDM5A|5927|lysine (K)-specific demethylase 5A##S66431|KDM5A|5927|lysine (K)-specific demethylase 5A##AK307580|KDM5A|5927|lysine (K)-specific demethylase 5A##AK307689|KDM5A|5927|lysine (K)-specific demethylase 5A##NM_001130146|CCDC77|84318|coiled-coil domain containing 77##NM_032358|CCDC77|84318|coiled-coil domain containing 77##AK293165|CCDC77|84318|coiled-coil domain containing 77##AK027638|CCDC77|84318|coiled-coil domain containing 77##AB089940|B4GALNT3|283358|beta-1,4-N-acetyl-galactosaminyl transferase 3##NM_173593|B4GALNT3|283358|beta-1,4-N-acetyl-galactosaminyl transferase 3##BC033133|LOC100049716|100049716|uncharacterized LOC100049716	0.303041	denovo_WM_21:-2:0.285
chr17	40540700	40540884	reg1000430.p2	5.784	+	TSC_hg19_v1_chr17_-_40540580 AK291933	-200	-	TSC_hg19_v1_chr17_-_40540493 L29277 NM_003150 NM_139276 AK301200 AK316139	-260	-	TSC_hg19_v1_chr17_-_40540461 BC014482 NM_213662 BC000627 BC029783 AK297994	-378	-	AB464659 TSC_hg19_v1_chr17_-_40575275 BC008849 AK298072 AK074512 AK092406 AK298563 AK314389 AX747528 BC066123 NM_012232	34435	-	TSC_hg19_v1_chr17_+_40610864 L78933 NM_001130020 NM_001130021 NM_005177 Z71460	70071	+	BC017826 TSC_hg19_v1_chr17_+_40610895 AK223554 AK299784	70093	+	AK291933|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##L29277|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##NM_003150|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##NM_139276|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##AK301200|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##AK316139|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##BC014482|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##NM_213662|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##BC000627|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##BC029783|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##AK297994|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##BC008849|PTRF|284119|polymerase I and transcript release factor##AK298072|PTRF|284119|polymerase I and transcript release factor##AK074512|PTRF|284119|polymerase I and transcript release factor##AK092406|PTRF|284119|polymerase I and transcript release factor##AK298563|PTRF|284119|polymerase I and transcript release factor##AK314389|PTRF|284119|polymerase I and transcript release factor##BC066123|PTRF|284119|polymerase I and transcript release factor##NM_012232|PTRF|284119|polymerase I and transcript release factor##L78933|ATP6V0A1|535|ATPase, H+ transporting, lysosomal V0 subunit a1##NM_001130020|ATP6V0A1|535|ATPase, H+ transporting, lysosomal V0 subunit a1##NM_001130021|ATP6V0A1|535|ATPase, H+ transporting, lysosomal V0 subunit a1##NM_005177|ATP6V0A1|535|ATPase, H+ transporting, lysosomal V0 subunit a1##Z71460|ATP6V0A1|535|ATPase, H+ transporting, lysosomal V0 subunit a1##BC017826|ATP6V0A1|535|ATPase, H+ transporting, lysosomal V0 subunit a1##AK223554|ATP6V0A1|535|ATPase, H+ transporting, lysosomal V0 subunit a1##AK299784|ATP6V0A1|535|ATPase, H+ transporting, lysosomal V0 subunit a1	0.061716	
chr21	40684348	40684474	reg1000977.p2	5.781	+	TSC_hg19_v1_chr21_-_40555343 BC010424 BC003619 BC011755 BC012809 AJ006291 AK001455 AK308614 NM_003720 NM_203433	-129010	-	TSC_hg19_v1_chr21_-_40555341 AK315406	-129071	-	CU678538 AB451468 AF417108 AY463963 CR541821 CR541852 DQ892311 DQ895511 TSC_hg19_v1_chr21_-_40555337	-129089	-	BC140079 TSC_hg19_v1_chr21_-_40685509 AJ292465 AJ292466 AB080586 AB080587 AJ238214	1061	-	TSC_hg19_v1_chr21_-_40685555 BC064602 BC142986	1158	-	TSC_hg19_v1_chr21_-_40685699 NM_001007246 NM_018963 NM_033656	1293	-	BC010424|PSMG1|8624|proteasome (prosome, macropain) assembly chaperone 1##BC003619|PSMG1|8624|proteasome (prosome, macropain) assembly chaperone 1##BC011755|PSMG1|8624|proteasome (prosome, macropain) assembly chaperone 1##BC012809|PSMG1|8624|proteasome (prosome, macropain) assembly chaperone 1##AJ006291|PSMG1|8624|proteasome (prosome, macropain) assembly chaperone 1##AK001455|PSMG1|8624|proteasome (prosome, macropain) assembly chaperone 1##AK308614|PSMG1|8624|proteasome (prosome, macropain) assembly chaperone 1##NM_003720|PSMG1|8624|proteasome (prosome, macropain) assembly chaperone 1##NM_203433|PSMG1|8624|proteasome (prosome, macropain) assembly chaperone 1##AK315406|PSMG1|8624|proteasome (prosome, macropain) assembly chaperone 1##AB451468|PSMG1|8624|proteasome (prosome, macropain) assembly chaperone 1##AF417108|PSMG1|8624|proteasome (prosome, macropain) assembly chaperone 1##AY463963|PSMG1|8624|proteasome (prosome, macropain) assembly chaperone 1##CR541821|PSMG1|8624|proteasome (prosome, macropain) assembly chaperone 1##CR541852|PSMG1|8624|proteasome (prosome, macropain) assembly chaperone 1##DQ892311|PSMG1|8624|proteasome (prosome, macropain) assembly chaperone 1##DQ895511|PSMG1|8624|proteasome (prosome, macropain) assembly chaperone 1##BC140079|BRWD1|54014|bromodomain and WD repeat domain containing 1##AJ292465|BRWD1|54014|bromodomain and WD repeat domain containing 1##AJ292466|BRWD1|54014|bromodomain and WD repeat domain containing 1##AB080586|BRWD1|54014|bromodomain and WD repeat domain containing 1##AB080587|BRWD1|54014|bromodomain and WD repeat domain containing 1##AJ238214|BRWD1|54014|bromodomain and WD repeat domain containing 1##BC064602|BRWD1|54014|bromodomain and WD repeat domain containing 1##BC142986|BRWD1|54014|bromodomain and WD repeat domain containing 1##NM_001007246|BRWD1|54014|bromodomain and WD repeat domain containing 1##NM_018963|BRWD1|54014|bromodomain and WD repeat domain containing 1##NM_033656|BRWD1|54014|bromodomain and WD repeat domain containing 1	0.987822	denovo_WM_21:-12:0.988
chr14	91527047	91527198	reg1000185.p1	5.777	+	TSC_hg19_v1_chr14_-_91526968 AF090421 AF074393 AF080000 BC017187 AK309925 NM_004755 NM_182398	-152	-	TSC_hg19_v1_chr14_-_91526731 CU677851	-368	-	NM_001010854 TSC_hg19_v1_chr14_-_91282765	-244357	-	NM_001102366 NM_001102368 NM_001102369 NM_024952 TSC_hg19_v1_chr14_+_91580416 AK097294 AK098752 BX537970 BX161393 BX247989 BC009182 AK308857 AB210031	53283	+	TSC_hg19_v1_chr14_+_91580472 AK023200	53390	+	AK123532 TSC_hg19_v1_chr14_+_91580717 BC065558 BX248782 AK091394 AK022564	53627	+	AF090421|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##AF074393|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##AF080000|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##BC017187|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##AK309925|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##NM_004755|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##NM_182398|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##NM_001010854|TTC7B|145567|tetratricopeptide repeat domain 7B##NM_001102366|C14orf159|80017|chromosome 14 open reading frame 159##NM_001102368|C14orf159|80017|chromosome 14 open reading frame 159##NM_001102369|C14orf159|80017|chromosome 14 open reading frame 159##NM_024952|C14orf159|80017|chromosome 14 open reading frame 159##AK097294|C14orf159|80017|chromosome 14 open reading frame 159##AK098752|C14orf159|80017|chromosome 14 open reading frame 159##BX537970|C14orf159|80017|chromosome 14 open reading frame 159##BX161393|C14orf159|80017|chromosome 14 open reading frame 159##BX247989|C14orf159|80017|chromosome 14 open reading frame 159##BC009182|C14orf159|80017|chromosome 14 open reading frame 159##AK308857|C14orf159|80017|chromosome 14 open reading frame 159##AB210031|C14orf159|80017|chromosome 14 open reading frame 159##AK023200|C14orf159|80017|chromosome 14 open reading frame 159##AK123532|C14orf159|80017|chromosome 14 open reading frame 159##BC065558|C14orf159|80017|chromosome 14 open reading frame 159##BX248782|C14orf159|80017|chromosome 14 open reading frame 159##AK091394|C14orf159|80017|chromosome 14 open reading frame 159##AK022564|C14orf159|80017|chromosome 14 open reading frame 159	1.33368	denovo_WM_21:-42:0.802	denovo_WM_21:99:0.478
chr18	59854278	59854384	reg1000968.p1	5.774	+	NM_012327 NM_176787 TSC_hg19_v1_chr18_-_59854311	-30	-	TSC_hg19_v1_chr18_-_59854258 AK315134	-88	-	TSC_hg19_v1_chr18_-_59854227 BC028363	-110	-	TSC_hg19_v1_chr18_+_59854521 AK091160 AX746817 NM_020854	194	+	TSC_hg19_v1_chr18_+_59854540 BX648481	257	+	TSC_hg19_v1_chr18_+_59855176 AB384606	879	+	NM_012327|PIGN|23556|phosphatidylinositol glycan anchor biosynthesis, class N##NM_176787|PIGN|23556|phosphatidylinositol glycan anchor biosynthesis, class N##AK315134|PIGN|23556|phosphatidylinositol glycan anchor biosynthesis, class N##BC028363|PIGN|23556|phosphatidylinositol glycan anchor biosynthesis, class N##AK091160|KIAA1468|57614|KIAA1468##NM_020854|KIAA1468|57614|KIAA1468##BX648481|KIAA1468|57614|KIAA1468	0.101577	
chr3	93698850	93698986	reg1000904.p2	5.771	+	TSC_hg19_v1_chr3_-_93692932 BC015801 NM_000313	-6000	-	AB590252 DQ892389 DQ895602 TSC_hg19_v1_chr3_-_93692741 Y00692 AK292994	-6242	-	M83941 AF213460 BC026247 TSC_hg19_v1_chr3_+_89156840 AK291411 AB384708	-4542068	+	TSC_hg19_v1_chr3_+_93698998 BC073842 NM_001174150 NM_001174151 NM_144996 NM_182896 CR936753 BC094725 BC104033 BC104034 BC104035 BC104036 AK299284 BC031093 AK296994 BC062993 BC015439 CR936763 AL713789 CR936756	109	+	BC034696 NM_001001850 TSC_hg19_v1_chr3_-_93747472	48546	-	BC045541 TSC_hg19_v1_chr3_-_93781761 AL832912 BC063379 NM_176815	82826	-	BC015801|PROS1|5627|protein S (alpha)##NM_000313|PROS1|5627|protein S (alpha)##DQ892389|PROS1|5627|protein S (alpha)##DQ895602|PROS1|5627|protein S (alpha)##Y00692|PROS1|5627|protein S (alpha)##AK292994|PROS1|5627|protein S (alpha)##M83941|EPHA3|2042|EPH receptor A3##AF213460|EPHA3|2042|EPH receptor A3##BC026247|EPHA3|2042|EPH receptor A3##AK291411|EPHA3|2042|EPH receptor A3##BC073842|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_001174150|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_001174151|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_144996|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_182896|ARL13B|200894|ADP-ribosylation factor-like 13B##CR936753|ARL13B|200894|ADP-ribosylation factor-like 13B##BC094725|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104033|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104034|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104035|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104036|ARL13B|200894|ADP-ribosylation factor-like 13B##AK299284|ARL13B|200894|ADP-ribosylation factor-like 13B##BC031093|ARL13B|200894|ADP-ribosylation factor-like 13B##AK296994|ARL13B|200894|ADP-ribosylation factor-like 13B##BC062993|ARL13B|200894|ADP-ribosylation factor-like 13B##BC015439|ARL13B|200894|ADP-ribosylation factor-like 13B##CR936763|ARL13B|200894|ADP-ribosylation factor-like 13B##AL713789|ARL13B|200894|ADP-ribosylation factor-like 13B##CR936756|ARL13B|200894|ADP-ribosylation factor-like 13B##BC034696|STX19|415117|syntaxin 19##NM_001001850|STX19|415117|syntaxin 19##BC045541|DHFRL1|200895|dihydrofolate reductase-like 1##AL832912|DHFRL1|200895|dihydrofolate reductase-like 1##BC063379|DHFRL1|200895|dihydrofolate reductase-like 1##NM_176815|DHFRL1|200895|dihydrofolate reductase-like 1	0.24479	denovo_WM_21:-29:0.245
chr2	26568739	26568860	reg1000883.p1	5.770	+	AY140955 NM_001145168 AB527153 AK293887 NM_001145169	-26857	-	AF113209 TSC_hg19_v1_chr2_+_26467830 BC014572 AK293142 D16481 AK304455 AK302322 BC030824	-100965	+	TSC_hg19_v1_chr2_+_26467806 AK130072 AK314455	-101002	+	TSC_hg19_v1_chr2_+_26568975 NM_033505 AK095620	142	+	AB051511 TSC_hg19_v1_chr2_+_26569010 AB621826 BC021229 BC015430 CU676884	246	+	AK122995 AY358172 NM_153835	848	-	AY140955|GPR113|165082|G protein-coupled receptor 113##NM_001145168|GPR113|165082|G protein-coupled receptor 113##AK293887|GPR113|165082|G protein-coupled receptor 113##NM_001145169|GPR113|165082|G protein-coupled receptor 113##AF113209|HADHB|3032|hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit##BC014572|HADHB|3032|hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit##AK293142|HADHB|3032|hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit##D16481|HADHB|3032|hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit##AK304455|HADHB|3032|hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit##AK302322|HADHB|3032|hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit##BC030824|HADHB|3032|hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit##AK130072|HADHB|3032|hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit##AK314455|HADHB|3032|hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit##NM_033505|EPT1|85465|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)##AK095620|EPT1|85465|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)##AB051511|EPT1|85465|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)##BC021229|EPT1|85465|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)##AK122995|GPR113|165082|G protein-coupled receptor 113##AY358172|GPR113|165082|G protein-coupled receptor 113##NM_153835|GPR113|165082|G protein-coupled receptor 113	0.629869	denovo_WM_21:31:0.630
chr1	62902089	62902265	reg1000982.p1	5.769	+	NM_001017415 NM_001017416	-203	+	TSC_hg19_v1_chr1_-_62785084 AB284127 BC060866 NM_181712	-117098	-	AK091941 AX747268 TSC_hg19_v1_chr1_-_62785028	-117178	-	BC040140 BC018745 NM_003368	176	+	TSC_hg19_v1_chr1_+_62902702 BC050525	501	+	TSC_hg19_v1_chr1_+_62902719 AK312423 BC011881	542	+	NM_001017415|USP1|7398|ubiquitin specific peptidase 1##NM_001017416|USP1|7398|ubiquitin specific peptidase 1##AB284127|KANK4|163782|KN motif and ankyrin repeat domains 4##BC060866|KANK4|163782|KN motif and ankyrin repeat domains 4##NM_181712|KANK4|163782|KN motif and ankyrin repeat domains 4##AK091941|KANK4|163782|KN motif and ankyrin repeat domains 4##BC040140|USP1|7398|ubiquitin specific peptidase 1##BC018745|USP1|7398|ubiquitin specific peptidase 1##NM_003368|USP1|7398|ubiquitin specific peptidase 1##BC050525|USP1|7398|ubiquitin specific peptidase 1##AK312423|USP1|7398|ubiquitin specific peptidase 1##BC011881|USP1|7398|ubiquitin specific peptidase 1	2.01793	denovo_WM_21:41:0.269	denovo_WM_21:66:0.993	denovo_WM_21:-78:0.637
chr16	72127624	72127745	reg1000839.p2	5.765	+	AK308891 BC009646 TSC_hg19_v1_chr16_-_72127507 AK222889 AK000518 NM_017853	-173	-	NM_020995	-30560	+	NM_001126102 NM_005143 AK314700 BC107587 AK055872 BC017862 BC058031 BC070299 K01763 L29394 BC121124 BC121125 X00637 K00422	-39161	+	NM_014003 TSC_hg19_v1_chr16_+_72127745 AK301074 AK291634 AK293776 AK297269 AK311169 D86977 AK309391 BC004235 BC008340 AK297791	78	+	NM_001142317	83	-	NM_001142318	530	-	AK308891|TXNL4B|54957|thioredoxin-like 4B##BC009646|TXNL4B|54957|thioredoxin-like 4B##AK222889|TXNL4B|54957|thioredoxin-like 4B##AK000518|TXNL4B|54957|thioredoxin-like 4B##NM_017853|TXNL4B|54957|thioredoxin-like 4B##NM_020995|HPR|3250|haptoglobin-related protein##NM_001126102|HP|3240|haptoglobin##NM_005143|HP|3240|haptoglobin##AK314700|HP|3240|haptoglobin##BC107587|HP|3240|haptoglobin##AK055872|HP|3240|haptoglobin##BC017862|HP|3240|haptoglobin##BC058031|HP|3240|haptoglobin##BC070299|HP|3240|haptoglobin##K01763|HP|3240|haptoglobin##L29394|HP|3240|haptoglobin##BC121124|HP|3240|haptoglobin##BC121125|HP|3240|haptoglobin##X00637|HP|3240|haptoglobin##K00422|HP|3240|haptoglobin##NM_014003|DHX38|9785|DEAH (Asp-Glu-Ala-His) box polypeptide 38##AK301074|DHX38|9785|DEAH (Asp-Glu-Ala-His) box polypeptide 38##AK291634|DHX38|9785|DEAH (Asp-Glu-Ala-His) box polypeptide 38##AK293776|DHX38|9785|DEAH (Asp-Glu-Ala-His) box polypeptide 38##AK297269|DHX38|9785|DEAH (Asp-Glu-Ala-His) box polypeptide 38##AK311169|DHX38|9785|DEAH (Asp-Glu-Ala-His) box polypeptide 38##D86977|DHX38|9785|DEAH (Asp-Glu-Ala-His) box polypeptide 38##AK309391|DHX38|9785|DEAH (Asp-Glu-Ala-His) box polypeptide 38##BC004235|DHX38|9785|DEAH (Asp-Glu-Ala-His) box polypeptide 38##BC008340|DHX38|9785|DEAH (Asp-Glu-Ala-His) box polypeptide 38##AK297791|DHX38|9785|DEAH (Asp-Glu-Ala-His) box polypeptide 38##NM_001142317|TXNL4B|54957|thioredoxin-like 4B##NM_001142318|TXNL4B|54957|thioredoxin-like 4B	0.0	
chr14	52456131	52456264	reg1000979.p2	5.762	+	TSC_hg19_v1_chr14_+_52327416 BC020774	-128761	+	TSC_hg19_v1_chr14_+_52327387 AL832878	-128805	+	AK001024 AK311334 TSC_hg19_v1_chr14_+_52327363	-128833	+	AF087877 AF100755 AF151857 DQ525179 NM_016039 TSC_hg19_v1_chr14_+_52456231 AK312004 BC001722	57	+	TSC_hg19_v1_chr14_+_52456323 EU446806 AB463506 AY817175	142	+	AJ223500 D86425 AB385187 CU690132 TSC_hg19_v1_chr14_-_52535721	79525	-	BC020774|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##AL832878|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##AK001024|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##AF087877|C14orf166|51637|chromosome 14 open reading frame 166##AF100755|C14orf166|51637|chromosome 14 open reading frame 166##AF151857|C14orf166|51637|chromosome 14 open reading frame 166##DQ525179|C14orf166|51637|chromosome 14 open reading frame 166##NM_016039|C14orf166|51637|chromosome 14 open reading frame 166##AK312004|C14orf166|51637|chromosome 14 open reading frame 166##BC001722|C14orf166|51637|chromosome 14 open reading frame 166##EU446806|C14orf166|51637|chromosome 14 open reading frame 166##AY817175|C14orf166|51637|chromosome 14 open reading frame 166##AJ223500|NID2|22795|nidogen 2 (osteonidogen)##D86425|NID2|22795|nidogen 2 (osteonidogen)	0.013383	
chr1	55230313	55230443	reg1000890.p1	5.760	+	BC007956 AK289679 TSC_hg19_v1_chr1_-_55230197 BC011758 NM_152268	-186	-	AK025524 NM_004623 TSC_hg19_v1_chr1_+_55181537 AF063602 AK292426 AK090964 AX746706 AK222562 AF073887 BC001276 BT006817 CU674642	-48841	+	NM_001039464 BC028620 CR749830 AK302446 AK302703 BX648088 AK093272 AX748025 BC144516 AK301894	-122925	+	AK000626 NM_001114108 NM_017904	36527	-	AK097520 NM_001110533 NM_152607 BC039109 BC064142	41376	+	TSC_hg19_v1_chr1_-_55331351 AK298414	100973	-	BC007956|PARS2|25973|prolyl-tRNA synthetase 2, mitochondrial (putative)##AK289679|PARS2|25973|prolyl-tRNA synthetase 2, mitochondrial (putative)##BC011758|PARS2|25973|prolyl-tRNA synthetase 2, mitochondrial (putative)##NM_152268|PARS2|25973|prolyl-tRNA synthetase 2, mitochondrial (putative)##AK025524|TTC4|7268|tetratricopeptide repeat domain 4##NM_004623|TTC4|7268|tetratricopeptide repeat domain 4##AF063602|TTC4|7268|tetratricopeptide repeat domain 4##AK292426|TTC4|7268|tetratricopeptide repeat domain 4##AK090964|TTC4|7268|tetratricopeptide repeat domain 4##AK222562|TTC4|7268|tetratricopeptide repeat domain 4##AF073887|TTC4|7268|tetratricopeptide repeat domain 4##BC001276|TTC4|7268|tetratricopeptide repeat domain 4##BT006817|TTC4|7268|tetratricopeptide repeat domain 4##NM_001039464|HEATR8|374977|HEAT repeat containing 8##BC028620|HEATR8-TTC4|100527960|HEATR8-TTC4 readthrough##CR749830|HEATR8-TTC4|100527960|HEATR8-TTC4 readthrough##AK302446|HEATR8|374977|HEAT repeat containing 8##AK302703|HEATR8|374977|HEAT repeat containing 8##BX648088|HEATR8-TTC4|100527960|HEATR8-TTC4 readthrough##AK093272|HEATR8|374977|HEAT repeat containing 8##BC144516|HEATR8|374977|HEAT repeat containing 8##AK301894|HEATR8|374977|HEAT repeat containing 8##AK000626|TTC22|55001|tetratricopeptide repeat domain 22##NM_001114108|TTC22|55001|tetratricopeptide repeat domain 22##NM_017904|TTC22|55001|tetratricopeptide repeat domain 22##AK097520|C1orf177|163747|chromosome 1 open reading frame 177##NM_001110533|C1orf177|163747|chromosome 1 open reading frame 177##NM_152607|C1orf177|163747|chromosome 1 open reading frame 177##BC039109|C1orf177|163747|chromosome 1 open reading frame 177##BC064142|C1orf177|163747|chromosome 1 open reading frame 177##AK298414|DHCR24|1718|24-dehydrocholesterol reductase	0.740107	denovo_WM_21:-4:0.712
chr4	83821702	83821832	reg1000849.p1	5.757	+	BC063702 BC045722 TSC_hg19_v1_chr4_-_83821699 AB020712 BC020725	-83	-	TSC_hg19_v1_chr4_-_83812377 NM_001077206 NM_001077207 NM_001077208 NM_016211 NM_014933	-9372	-	TSC_hg19_v1_chr4_-_83812338 BC039834	-9414	-	TSC_hg19_v1_chr4_+_83821863 NM_024672 AK091412 AX746965 BC131722	142	+	BC109278 BC109277 BX537919 TSC_hg19_v1_chr4_-_83931937 AK294256	110144	-	AB111889 BX640657 TSC_hg19_v1_chr4_-_83931982 BX640966 NM_001115008 NM_194282	110227	-	BC063702|LOC100499177|100499177|uncharacterized LOC100499177##BC045722|LOC100499177|100499177|uncharacterized LOC100499177##AB020712|SEC31A|22872|SEC31 homolog A (S. cerevisiae)##BC020725|LOC100499177|100499177|uncharacterized LOC100499177##NM_001077206|SEC31A|22872|SEC31 homolog A (S. cerevisiae)##NM_001077207|SEC31A|22872|SEC31 homolog A (S. cerevisiae)##NM_001077208|SEC31A|22872|SEC31 homolog A (S. cerevisiae)##NM_016211|SEC31A|22872|SEC31 homolog A (S. cerevisiae)##NM_014933|SEC31A|22872|SEC31 homolog A (S. cerevisiae)##BC039834|SEC31A|22872|SEC31 homolog A (S. cerevisiae)##NM_024672|THAP9|79725|THAP domain containing 9##AK091412|THAP9|79725|THAP domain containing 9##BC131722|THAP9|79725|THAP domain containing 9##BC109278|LIN54|132660|lin-54 homolog (C. elegans)##BC109277|LIN54|132660|lin-54 homolog (C. elegans)##BX537919|LIN54|132660|lin-54 homolog (C. elegans)##AK294256|LIN54|132660|lin-54 homolog (C. elegans)##AB111889|LIN54|132660|lin-54 homolog (C. elegans)##BX640657|LIN54|132660|lin-54 homolog (C. elegans)##BX640966|LIN54|132660|lin-54 homolog (C. elegans)##NM_001115008|LIN54|132660|lin-54 homolog (C. elegans)##NM_194282|LIN54|132660|lin-54 homolog (C. elegans)	1.893617	denovo_WM_21:12:0.911	denovo_WM_21:-17:0.983
chrX	80377222	80377334	reg1000928.p1	5.755	+	BC111490 AY497046 AY497048 AY497049 AY497050 AY497051 AY497052 AY497053 AY497054 AY497055 NM_153252	-312071	-	BX537938 NM_152630 BC030784 AK313875 BC028710 BC034979	-701316	+	AK128147 NM_001170574	-786276	+	NM_003022 AK024892 AK309350 BC103762 TSC_hg19_v1_chrX_+_80457495	80125	+	AK094058 AX748432 NM_030763	80162	-	TSC_hg19_v1_chrX_+_80457572 AK309351	80298	+	BC111490|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497046|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497048|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497049|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497050|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497051|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497052|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497053|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497054|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497055|BRWD3|254065|bromodomain and WD repeat domain containing 3##NM_153252|BRWD3|254065|bromodomain and WD repeat domain containing 3##BX537938|FAM46D|169966|family with sequence similarity 46, member D##NM_152630|FAM46D|169966|family with sequence similarity 46, member D##BC030784|FAM46D|169966|family with sequence similarity 46, member D##AK313875|FAM46D|169966|family with sequence similarity 46, member D##BC028710|FAM46D|169966|family with sequence similarity 46, member D##BC034979|FAM46D|169966|family with sequence similarity 46, member D##AK128147|FAM46D|169966|family with sequence similarity 46, member D##NM_001170574|FAM46D|169966|family with sequence similarity 46, member D##NM_003022|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK024892|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK309350|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##BC103762|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK094058|HMGN5|79366|high mobility group nucleosome binding domain 5##NM_030763|HMGN5|79366|high mobility group nucleosome binding domain 5##AK309351|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like	0.970657	denovo_WM_21:12:0.971
chr12	98909279	98909409	reg1000882.p1	5.753	+	TSC_hg19_v1_chr12_-_98897622 AK126817	-11717	-	BC027605 NM_001135175	-1608101	+	AK290058 NM_001135176 NM_001135177 NM_152905 TSC_hg19_v1_chr12_+_97301000 BC026168 AK303656 AK315821 AL832466 BC020799 AK093221 AX747997	-1608313	+	TSC_hg19_v1_chr12_+_98909388 NM_001032283 NM_001032284 NM_003276 BC050383 BC053675	23	+	TSC_hg19_v1_chr12_+_98909409 U09087 U09088 AF070631	63	+	TSC_hg19_v1_chr12_+_98909412 AB209297	67	+	AK126817|LOC643770|643770|uncharacterized LOC643770##BC027605|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135175|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK290058|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135176|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135177|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_152905|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC026168|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK303656|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK315821|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AL832466|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC020799|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK093221|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001032283|TMPO|7112|thymopoietin##NM_001032284|TMPO|7112|thymopoietin##NM_003276|TMPO|7112|thymopoietin##BC050383|TMPO|7112|thymopoietin##BC053675|TMPO|7112|thymopoietin##U09087|TMPO|7112|thymopoietin##U09088|TMPO|7112|thymopoietin##AF070631|TMPO|7112|thymopoietin##AB209297|TMPO|7112|thymopoietin	0.079366	
chrX	48815332	48815406	reg1000997.p1	5.752	+	TSC_hg19_v1_chrX_-_48815168 BC098440	-238	-	TSC_hg19_v1_chrX_-_48814870 BC009917 NM_001136157 NM_001136158 NM_017602	-495	-	TSC_hg19_v1_chrX_-_48814831 BC028225	-564	-	TSC_hg19_v1_chrX_-_48815601 AK294590	238	-	TSC_hg19_v1_chrX_-_48815644 NM_001136159	275	-	BC045659 NM_004979 TSC_hg19_v1_chrX_-_48828252	12882	-	BC098440|OTUD5|55593|OTU domain containing 5##BC009917|OTUD5|55593|OTU domain containing 5##NM_001136157|OTUD5|55593|OTU domain containing 5##NM_001136158|OTUD5|55593|OTU domain containing 5##NM_017602|OTUD5|55593|OTU domain containing 5##BC028225|OTUD5|55593|OTU domain containing 5##AK294590|OTUD5|55593|OTU domain containing 5##NM_001136159|OTUD5|55593|OTU domain containing 5##BC045659|KCND1|3750|potassium voltage-gated channel, Shal-related subfamily, member 1##NM_004979|KCND1|3750|potassium voltage-gated channel, Shal-related subfamily, member 1	0.909145	denovo_WM_21:-2:0.909
chr19	21182587	21182684	reg1000556.p1	5.751	+	NM_003429 BC068066 TSC_hg19_v1_chr19_+_21106090 U35376 M61866 BC008688	-76549	+	BC067843 TSC_hg19_v1_chr19_+_20959109	-223526	+	BC150651 AK096221 CR749233 TSC_hg19_v1_chr19_-_20844378 BC007116 BX648764 AK131567 BC107803 NM_001076675 NM_145297	-338273	-	AK290475 NM_001172671 NM_025189 TSC_hg19_v1_chr19_+_21203432 AK023721 AX721141 AY269787 BC111776	20846	+	NM_182515 AL834415 TSC_hg19_v1_chr19_+_21264973 AK056006 BC022527 BC037782 BC050468 BC064985	82368	+	BX647597 TSC_hg19_v1_chr19_+_21324836 AK308127 NM_133473 AK293072 AB075849 BC065374 BC040506	142221	+	NM_003429|ZNF85|7639|zinc finger protein 85##BC068066|ZNF85|7639|zinc finger protein 85##U35376|ZNF85|7639|zinc finger protein 85##M61866|ZNF85|7639|zinc finger protein 85##BC008688|ZNF85|7639|zinc finger protein 85##AK096221|ZNF626|199777|zinc finger protein 626##CR749233|ZNF626|199777|zinc finger protein 626##BC007116|ZNF626|199777|zinc finger protein 626##BX648764|ZNF626|199777|zinc finger protein 626##BC107803|ZNF626|199777|zinc finger protein 626##NM_001076675|ZNF626|199777|zinc finger protein 626##NM_145297|ZNF626|199777|zinc finger protein 626##AK290475|ZNF430|80264|zinc finger protein 430##NM_001172671|ZNF430|80264|zinc finger protein 430##NM_025189|ZNF430|80264|zinc finger protein 430##AK023721|ZNF430|80264|zinc finger protein 430##AY269787|ZNF430|80264|zinc finger protein 430##BC111776|ZNF430|80264|zinc finger protein 430##NM_182515|ZNF714|148206|zinc finger protein 714##AK056006|ZNF714|148206|zinc finger protein 714##BC022527|ZNF714|148206|zinc finger protein 714##BC037782|ZNF714|148206|zinc finger protein 714##BC050468|ZNF714|148206|zinc finger protein 714##BC064985|ZNF714|148206|zinc finger protein 714##BX647597|ZNF431|170959|zinc finger protein 431##AK308127|ZNF431|170959|zinc finger protein 431##NM_133473|ZNF431|170959|zinc finger protein 431##AK293072|ZNF431|170959|zinc finger protein 431##AB075849|ZNF431|170959|zinc finger protein 431##BC040506|ZNF431|170959|zinc finger protein 431	1.501942	denovo_WM_21:26:0.848	denovo_WM_21:54:0.654
chr19	12833472	12833600	reg1000978.p1	5.746	+	NM_001136196 TSC_hg19_v1_chr19_-_12833473	-53	-	TSC_hg19_v1_chr19_-_12833356 BC063679 BC072420 NM_013433 BC018314 AK299485	-388	-	AY736034 TSC_hg19_v1_chr19_-_12807434 BC004290 AK302744 AK123037 NM_032301	-26112	-	TSC_hg19_v1_chr19_-_12834747 AF007748 AK056183 NM_001136195	1198	-	TSC_hg19_v1_chr19_-_12845478 CU677275 DQ891449 DQ894628 BC004533	11937	-	TSC_hg19_v1_chr19_-_12845497 BC015347 AK315754 AK027588	11952	-	NM_001136196|TNPO2|30000|transportin 2##BC063679|TNPO2|30000|transportin 2##BC072420|TNPO2|30000|transportin 2##NM_013433|TNPO2|30000|transportin 2##BC018314|TNPO2|30000|transportin 2##AK299485|TNPO2|30000|transportin 2##AY736034|FBXW9|84261|F-box and WD repeat domain containing 9##BC004290|FBXW9|84261|F-box and WD repeat domain containing 9##AK302744|FBXW9|84261|F-box and WD repeat domain containing 9##AK123037|FBXW9|84261|F-box and WD repeat domain containing 9##NM_032301|FBXW9|84261|F-box and WD repeat domain containing 9##AF007748|TNPO2|30000|transportin 2##AK056183|TNPO2|30000|transportin 2##NM_001136195|TNPO2|30000|transportin 2##DQ891449|C19orf43|79002|chromosome 19 open reading frame 43##DQ894628|C19orf43|79002|chromosome 19 open reading frame 43##BC004533|C19orf43|79002|chromosome 19 open reading frame 43##BC015347|C19orf43|79002|chromosome 19 open reading frame 43##AK315754|C19orf43|79002|chromosome 19 open reading frame 43##AK027588|C19orf43|79002|chromosome 19 open reading frame 43	0.983089	denovo_WM_21:-46:0.983
chr14	64010090	64010227	reg1000944.p1	5.745	+	TSC_hg19_v1_chr14_-_64010089 BC056156 BC034994	-69	-	TSC_hg19_v1_chr14_-_64010080 AK313500 BC013154 NM_006246	-84	-	TSC_hg19_v1_chr14_-_64010017 Z69029 AK299520 BC073873 AB209811 BC092477 L76703 BC064358	-142	-	BX248008 NM_001008726	97966	-	TSC_hg19_v1_chr14_-_64108544 AF115513 AK095324 NM_080666	98404	-	AJ293294 TSC_hg19_v1_chr14_-_64194774 AF349315 BC063839 NM_030791 AK314188 BC070060	184591	-	BC056156|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##BC034994|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##AK313500|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##BC013154|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##NM_006246|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##Z69029|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##AK299520|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##BC073873|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##AB209811|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##BC092477|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##L76703|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##BC064358|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##BX248008|WDR89|112840|WD repeat domain 89##NM_001008726|WDR89|112840|WD repeat domain 89##AF115513|WDR89|112840|WD repeat domain 89##AK095324|WDR89|112840|WD repeat domain 89##NM_080666|WDR89|112840|WD repeat domain 89##AJ293294|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AF349315|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC063839|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##NM_030791|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AK314188|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC070060|SGPP1|81537|sphingosine-1-phosphate phosphatase 1	0.018809	
chr6	41040754	41040871	reg1000877.p1	5.745	+	TSC_hg19_v1_chr6_+_41040723 X59711	-90	+	TSC_hg19_v1_chr6_+_41040712 NM_002505 NM_021705	-113	+	TSC_hg19_v1_chr6_-_41040208 BC011709 NM_145063 AK290939 AK310688 AK313361 BC021579 AJ420538	-555	-	TSC_hg19_v1_chr6_+_41040930 BC039244	113	+	AF508193 AF534822 AF534823 BC100944 BC100945 BC100946 NM_178174 AY358357	81237	-	DQ891310 DQ894494 BC032362 BC018284 TSC_hg19_v1_chr6_-_41130855	90026	-	X59711|NFYA|4800|nuclear transcription factor Y, alpha##NM_002505|NFYA|4800|nuclear transcription factor Y, alpha##NM_021705|NFYA|4800|nuclear transcription factor Y, alpha##BC011709|C6orf130|221443|chromosome 6 open reading frame 130##NM_145063|C6orf130|221443|chromosome 6 open reading frame 130##AK290939|C6orf130|221443|chromosome 6 open reading frame 130##AK310688|C6orf130|221443|chromosome 6 open reading frame 130##AK313361|C6orf130|221443|chromosome 6 open reading frame 130##BC021579|C6orf130|221443|chromosome 6 open reading frame 130##AJ420538|C6orf130|221443|chromosome 6 open reading frame 130##BC039244|NFYA|4800|nuclear transcription factor Y, alpha##AF508193|TREML1|340205|triggering receptor expressed on myeloid cells-like 1##AF534822|TREML1|340205|triggering receptor expressed on myeloid cells-like 1##AF534823|TREML1|340205|triggering receptor expressed on myeloid cells-like 1##BC100944|TREML1|340205|triggering receptor expressed on myeloid cells-like 1##BC100945|TREML1|340205|triggering receptor expressed on myeloid cells-like 1##BC100946|TREML1|340205|triggering receptor expressed on myeloid cells-like 1##NM_178174|TREML1|340205|triggering receptor expressed on myeloid cells-like 1##AY358357|TREML1|340205|triggering receptor expressed on myeloid cells-like 1##DQ891310|TREM2|54209|triggering receptor expressed on myeloid cells 2##DQ894494|TREM2|54209|triggering receptor expressed on myeloid cells 2##BC032362|TREM2|54209|triggering receptor expressed on myeloid cells 2##BC018284|TREM2|54209|triggering receptor expressed on myeloid cells 2	1.506749	denovo_WM_21:-23:0.966	denovo_WM_21:-53:0.383
chr11	66247731	66247890	reg1000940.p1	5.739	+	TSC_hg19_v1_chr11_+_66234371 NM_001098510 NM_001243136 NM_145065 AL834395 BC021256 AK074201 BC025723	-13457	+	TSC_hg19_v1_chr11_-_66234176 AK127603	-13618	-	AK094060 AX748433 NM_001243135	-14013	+	TSC_hg19_v1_chr11_+_66247882 AL833475 NM_005700 NM_130443 BC007221	80	+	TSC_hg19_v1_chr11_+_66247908 AK021449 AK222847 AK297199 AK222566 AK304581 BC014038 BC001446	104	+	AK095638 TSC_hg19_v1_chr11_+_66278105 BX647612 AK294962 AK302657 AK296311 BC047642 AF503941 NM_024649 BC109064 BC109065	30306	+	NM_001098510|PELI3|246330|pellino homolog 3 (Drosophila)##NM_001243136|PELI3|246330|pellino homolog 3 (Drosophila)##NM_145065|PELI3|246330|pellino homolog 3 (Drosophila)##AL834395|PELI3|246330|pellino homolog 3 (Drosophila)##BC021256|PELI3|246330|pellino homolog 3 (Drosophila)##AK074201|PELI3|246330|pellino homolog 3 (Drosophila)##BC025723|PELI3|246330|pellino homolog 3 (Drosophila)##AK127603|MRPL11|65003|mitochondrial ribosomal protein L11##AK094060|PELI3|246330|pellino homolog 3 (Drosophila)##NM_001243135|PELI3|246330|pellino homolog 3 (Drosophila)##AL833475|DPP3|10072|dipeptidyl-peptidase 3##NM_005700|DPP3|10072|dipeptidyl-peptidase 3##NM_130443|DPP3|10072|dipeptidyl-peptidase 3##BC007221|DPP3|10072|dipeptidyl-peptidase 3##AK021449|DPP3|10072|dipeptidyl-peptidase 3##AK222847|DPP3|10072|dipeptidyl-peptidase 3##AK297199|DPP3|10072|dipeptidyl-peptidase 3##AK222566|DPP3|10072|dipeptidyl-peptidase 3##AK304581|DPP3|10072|dipeptidyl-peptidase 3##BC014038|DPP3|10072|dipeptidyl-peptidase 3##BC001446|DPP3|10072|dipeptidyl-peptidase 3##AK095638|BBS1|582|Bardet-Biedl syndrome 1##BX647612|BBS1|582|Bardet-Biedl syndrome 1##AK294962|BBS1|582|Bardet-Biedl syndrome 1##AK302657|BBS1|582|Bardet-Biedl syndrome 1##AK296311|BBS1|582|Bardet-Biedl syndrome 1##BC047642|BBS1|582|Bardet-Biedl syndrome 1##AF503941|BBS1|582|Bardet-Biedl syndrome 1##NM_024649|BBS1|582|Bardet-Biedl syndrome 1##BC109064|BBS1|582|Bardet-Biedl syndrome 1##BC109065|BBS1|582|Bardet-Biedl syndrome 1	0.665767	denovo_WM_21:-4:0.498
chr19	46087717	46087819	reg1000568.p2	5.736	+	TSC_hg19_v1_chr19_+_46010748 BC026019 BC038224 Z46389	-76995	+	TSC_hg19_v1_chr19_+_46010736 AK314812	-77045	+	TSC_hg19_v1_chr19_+_46010688 NM_003370	-77080	+	AB528200 AM392686 EU832556 TSC_hg19_v1_chr19_-_46088061 BC064146 BC005059 BC047316	274	-	TSC_hg19_v1_chr19_-_46088075 AK025840	310	-	TSC_hg19_v1_chr19_-_46088084 AK098798 NM_001017989 NM_025136	336	-	BC026019|VASP|7408|vasodilator-stimulated phosphoprotein##BC038224|VASP|7408|vasodilator-stimulated phosphoprotein##Z46389|VASP|7408|vasodilator-stimulated phosphoprotein##AK314812|VASP|7408|vasodilator-stimulated phosphoprotein##NM_003370|VASP|7408|vasodilator-stimulated phosphoprotein##AM392686|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)##EU832556|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)##BC064146|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)##BC005059|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)##BC047316|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)##AK025840|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)##AK098798|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)##NM_001017989|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)##NM_025136|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)	0.898242	denovo_WM_21:21:0.864
chr2	238875392	238875545	reg1001015.p2	5.736	+	NM_005855 TSC_hg19_v1_chr2_+_238768265 AJ001014 BC000548 DQ891905 DQ895091 AY265457 CR542032 CR542044	-107216	+	NM_001080504 TSC_hg19_v1_chr2_+_238707424 BX648107	-168048	+	TSC_hg19_v1_chr2_+_238601052 EU832771 EU832772 GQ129315 GQ129316	-274393	+	NM_080678 TSC_hg19_v1_chr2_+_238875655 AK002119 AK293334 AK297502 AK303094	156	+	TSC_hg19_v1_chr2_+_238875673 AK290063	212	+	TSC_hg19_v1_chr2_+_238875689 BC010549 AK294107	235	+	NM_005855|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##AJ001014|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##BC000548|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##DQ891905|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##DQ895091|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##AY265457|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##CR542032|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##CR542044|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##NM_001080504|RBM44|375316|RNA binding motif protein 44##BX648107|RBM44|375316|RNA binding motif protein 44##EU832771|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##EU832772|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##GQ129315|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##GQ129316|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##NM_080678|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK293334|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK297502|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK303094|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK290063|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##BC010549|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK294107|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)	0.415285	denovo_WM_21:-32:0.374
chr7	25901902	25902087	reg1001026.p1	5.736	+	AB040290 AF330057 AF440392 NM_022150	-633914	-	TSC_hg19_v1_chr7_-_25219932 BC060879 NM_138811 BC043269 AK097248	-682123	-	TSC_hg19_v1_chr7_-_25164943 AK311836 BC024216 NM_018947	-737054	-	TSC_hg19_v1_chr7_+_26191817 NM_004289 BC068455 AF133059 AF134891	289939	+	TSC_hg19_v1_chr7_-_26232151 BX538099	330157	-	TSC_hg19_v1_chr7_-_26240358 BC000506 M29064 M29065	338347	-	AB040290|NPVF|64111|neuropeptide VF precursor##AF330057|NPVF|64111|neuropeptide VF precursor##AF440392|NPVF|64111|neuropeptide VF precursor##NM_022150|NPVF|64111|neuropeptide VF precursor##BC060879|C7orf31|136895|chromosome 7 open reading frame 31##NM_138811|C7orf31|136895|chromosome 7 open reading frame 31##BC043269|C7orf31|136895|chromosome 7 open reading frame 31##AK097248|C7orf31|136895|chromosome 7 open reading frame 31##AK311836|CYCS|54205|cytochrome c, somatic##BC024216|CYCS|54205|cytochrome c, somatic##NM_018947|CYCS|54205|cytochrome c, somatic##NM_004289|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##BC068455|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##AF133059|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##AF134891|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##BX538099|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##BC000506|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##M29064|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##M29065|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1	0.237422	
chr15	69452732	69452861	reg1001032.p1	5.733	+	NM_001184779 NM_024505 AF353088 AF353089 AK314689 AK074071	-145745	+	NM_001184780 NM_145658 AY358983 AF325189 AF325190 BC017998 AF275321 BC125097 BC125098 CU676134	-229881	+	TSC_hg19_v1_chr15_-_69113264 NM_006305	-339536	-	TSC_hg19_v1_chr15_+_69452935 BC142975 AY635582 NM_015554 AK098595 BC033828 BC019011	102	+	TSC_hg19_v1_chr15_+_69591278 BC039234 NM_017705	138492	+	AK000197 AY424283 NM_001104554	153945	+	NM_001184779|NOX5|79400|NADPH oxidase, EF-hand calcium binding domain 5##NM_024505|NOX5|79400|NADPH oxidase, EF-hand calcium binding domain 5##AF353088|NOX5|79400|NADPH oxidase, EF-hand calcium binding domain 5##AF353089|NOX5|79400|NADPH oxidase, EF-hand calcium binding domain 5##AK314689|NOX5|79400|NADPH oxidase, EF-hand calcium binding domain 5##AK074071|NOX5|79400|NADPH oxidase, EF-hand calcium binding domain 5##NM_001184780|NOX5|79400|NADPH oxidase, EF-hand calcium binding domain 5##NM_145658|SPESP1|246777|sperm equatorial segment protein 1##AY358983|SPESP1|246777|sperm equatorial segment protein 1##AF325189|NOX5|79400|NADPH oxidase, EF-hand calcium binding domain 5##AF325190|NOX5|79400|NADPH oxidase, EF-hand calcium binding domain 5##BC017998|SPESP1|246777|sperm equatorial segment protein 1##AF275321|SPESP1|246777|sperm equatorial segment protein 1##BC125097|NOX5|79400|NADPH oxidase, EF-hand calcium binding domain 5##BC125098|NOX5|79400|NADPH oxidase, EF-hand calcium binding domain 5##NM_006305|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##AY635582|GLCE|26035|glucuronic acid epimerase##NM_015554|GLCE|26035|glucuronic acid epimerase##BC039234|PAQR5|54852|progestin and adipoQ receptor family member V##NM_017705|PAQR5|54852|progestin and adipoQ receptor family member V##AK000197|PAQR5|54852|progestin and adipoQ receptor family member V##AY424283|PAQR5|54852|progestin and adipoQ receptor family member V##NM_001104554|PAQR5|54852|progestin and adipoQ receptor family member V	0.0	
chr14	64805541	64805676	reg1000950.p1	5.732	+	NM_001040276 BX247957 TSC_hg19_v1_chr14_-_64805347	-250	-	AF051427 AF051428 AF060555 NM_001040275 NM_001437	-44506	-	AF074599 AY438022 X99101 DQ777076 DQ777077 DQ838582 DQ838583 HQ692820 HQ692821 AF124790 NM_001214902 NM_001214903 AB006590	-55945	-	AK302747 NM_005956	49145	+	TSC_hg19_v1_chr14_+_64855070 AK095514 AK312361 BC050420 AK309266 BC009806 J04031 AB384767 DQ893634 DQ896853	49488	+	AK315336 NM_004857 BC057229	126652	+	NM_001040276|ESR2|2100|estrogen receptor 2 (ER beta)##BX247957|ESR2|2100|estrogen receptor 2 (ER beta)##AF051427|ESR2|2100|estrogen receptor 2 (ER beta)##AF051428|ESR2|2100|estrogen receptor 2 (ER beta)##AF060555|ESR2|2100|estrogen receptor 2 (ER beta)##NM_001040275|ESR2|2100|estrogen receptor 2 (ER beta)##NM_001437|ESR2|2100|estrogen receptor 2 (ER beta)##AF074599|ESR2|2100|estrogen receptor 2 (ER beta)##AY438022|ESR2|2100|estrogen receptor 2 (ER beta)##X99101|ESR2|2100|estrogen receptor 2 (ER beta)##DQ777076|ESR2|2100|estrogen receptor 2 (ER beta)##DQ777077|ESR2|2100|estrogen receptor 2 (ER beta)##DQ838582|ESR2|2100|estrogen receptor 2 (ER beta)##DQ838583|ESR2|2100|estrogen receptor 2 (ER beta)##HQ692820|ESR2|2100|estrogen receptor 2 (ER beta)##HQ692821|ESR2|2100|estrogen receptor 2 (ER beta)##AF124790|ESR2|2100|estrogen receptor 2 (ER beta)##NM_001214902|ESR2|2100|estrogen receptor 2 (ER beta)##NM_001214903|ESR2|2100|estrogen receptor 2 (ER beta)##AB006590|ESR2|2100|estrogen receptor 2 (ER beta)##AK302747|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##NM_005956|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##AK312361|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##BC050420|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##AK309266|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##BC009806|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##J04031|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##DQ893634|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##DQ896853|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##AK315336|AKAP5|9495|A kinase (PRKA) anchor protein 5##NM_004857|AKAP5|9495|A kinase (PRKA) anchor protein 5##BC057229|AKAP5|9495|A kinase (PRKA) anchor protein 5	0.0	
chr3	27410961	27411065	reg1000895.p1	5.732	+	TSC_hg19_v1_chr3_-_27410884 AK123061 NM_199347	-100	-	BC067784 TSC_hg19_v1_chr3_+_26664296 AF396933 NM_052953	-746713	+	TSC_hg19_v1_chr3_+_25831590 NM_001145391 NM_017897 AK000611 AK304821 AK225260 BC008202	-1579433	+	AF047033 AF089726 NM_003615	87231	-	TSC_hg19_v1_chr3_-_27525833 EU499349 EU934246 EU934247 EU934248 EU934249 EU934250 FJ178574 FJ178575 FJ178576 GU354307 GU354308 GU354309 GU354310	114812	-	TSC_hg19_v1_chr3_-_27525893 AK309734	114917	-	AK123061|NEK10|152110|NIMA (never in mitosis gene a)- related kinase 10##NM_199347|NEK10|152110|NIMA (never in mitosis gene a)- related kinase 10##BC067784|LRRC3B|116135|leucine rich repeat containing 3B##AF396933|LRRC3B|116135|leucine rich repeat containing 3B##NM_052953|LRRC3B|116135|leucine rich repeat containing 3B##NM_001145391|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##NM_017897|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AK000611|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AK304821|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AK225260|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##BC008202|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AF047033|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AF089726|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##NM_003615|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU499349|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934246|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934247|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934248|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934249|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934250|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178574|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178575|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178576|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354307|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354308|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354309|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354310|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AK309734|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7	0.874621	denovo_WM_21:-30:0.875
chr22	39886251	39886395	reg1001020.p1	5.727	+	NM_001098270 AK313664 CR456519 D13789 AB463105 CU013119 CU013407 HQ258450	-3033	+	TSC_hg19_v1_chr22_+_39853534 BC075025 BC075026 BC113383 BC113718	-32787	+	TSC_hg19_v1_chr22_+_39853325 NM_002409	-33003	+	TSC_hg19_v1_chr22_+_39898257 NM_019008	11942	+	TSC_hg19_v1_chr22_+_39898332 AL834205	11987	+	TSC_hg19_v1_chr22_+_39898363 AL365515	12036	+	NM_001098270|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##AK313664|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##CR456519|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##D13789|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##CU013119|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##CU013407|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##HQ258450|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##BC075025|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##BC075026|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##BC113383|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##BC113718|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##NM_002409|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##NM_019008|SMCR7L|54471|Smith-Magenis syndrome chromosome region, candidate 7-like##AL834205|SMCR7L|54471|Smith-Magenis syndrome chromosome region, candidate 7-like##AL365515|SMCR7L|54471|Smith-Magenis syndrome chromosome region, candidate 7-like	0.988023	denovo_WM_21:9:0.988
chr17	61699651	61699773	reg1000242.p2	5.726	+	TSC_hg19_v1_chr17_+_61678277 BC007744 CU675789	-21353	+	TSC_hg19_v1_chr17_+_61678230 AK315375 NM_016360 AK094052 AX748431 BC005049	-21480	+	TSC_hg19_v1_chr17_+_61628000 DQ891233 DQ894417 AB590131	-71700	+	TSC_hg19_v1_chr17_+_61699772 AX775739 AX775741 AK315305	34	+	TSC_hg19_v1_chr17_+_61699785 AK225784	72	+	TSC_hg19_v1_chr17_+_61699786 BC090859 NM_002401 NM_203351 AL834303	86	+	BC007744|TACO1|51204|translational activator of mitochondrially encoded cytochrome c oxidase I##AK315375|TACO1|51204|translational activator of mitochondrially encoded cytochrome c oxidase I##NM_016360|TACO1|51204|translational activator of mitochondrially encoded cytochrome c oxidase I##AK094052|TACO1|51204|translational activator of mitochondrially encoded cytochrome c oxidase I##BC005049|TACO1|51204|translational activator of mitochondrially encoded cytochrome c oxidase I##DQ891233|DCAF7|10238|DDB1 and CUL4 associated factor 7##DQ894417|DCAF7|10238|DDB1 and CUL4 associated factor 7##AX775739|MAP3K3|4215|mitogen-activated protein kinase kinase kinase 3##AX775741|MAP3K3|4215|mitogen-activated protein kinase kinase kinase 3##AK315305|MAP3K3|4215|mitogen-activated protein kinase kinase kinase 3##AK225784|MAP3K3|4215|mitogen-activated protein kinase kinase kinase 3##BC090859|MAP3K3|4215|mitogen-activated protein kinase kinase kinase 3##NM_002401|MAP3K3|4215|mitogen-activated protein kinase kinase kinase 3##NM_203351|MAP3K3|4215|mitogen-activated protein kinase kinase kinase 3##AL834303|MAP3K3|4215|mitogen-activated protein kinase kinase kinase 3	0.89055	denovo_WM_21:-44:0.891
chrX	48595679	48595794	reg1000790.p2	5.725	+	TSC_hg19_v1_chrX_+_48555151 AK298233 AK223071 AK312547 AB528514 CR541746 CU675305 DQ892608 DQ895848	-40581	+	TSC_hg19_v1_chrX_+_48555124 AF019968 NM_003173 BC006238	-40608	+	TSC_hg19_v1_chrX_+_48542206 BC002961 U12707 BC012738 U19927 EU176449 AB590224	-53513	+	BC067236 NM_001080489	24417	+	X17254 BC009797 NM_002049 M30601	49252	+	AK302926 TSC_hg19_v1_chrX_+_48660460 AL137696	64639	+	AK298233|SUV39H1|6839|suppressor of variegation 3-9 homolog 1 (Drosophila)##AK223071|SUV39H1|6839|suppressor of variegation 3-9 homolog 1 (Drosophila)##AK312547|SUV39H1|6839|suppressor of variegation 3-9 homolog 1 (Drosophila)##CR541746|SUV39H1|6839|suppressor of variegation 3-9 homolog 1 (Drosophila)##DQ892608|SUV39H1|6839|suppressor of variegation 3-9 homolog 1 (Drosophila)##DQ895848|SUV39H1|6839|suppressor of variegation 3-9 homolog 1 (Drosophila)##AF019968|SUV39H1|6839|suppressor of variegation 3-9 homolog 1 (Drosophila)##NM_003173|SUV39H1|6839|suppressor of variegation 3-9 homolog 1 (Drosophila)##BC006238|SUV39H1|6839|suppressor of variegation 3-9 homolog 1 (Drosophila)##BC002961|WAS|7454|Wiskott-Aldrich syndrome (eczema-thrombocytopenia)##U12707|WAS|7454|Wiskott-Aldrich syndrome (eczema-thrombocytopenia)##BC012738|WAS|7454|Wiskott-Aldrich syndrome (eczema-thrombocytopenia)##U19927|WAS|7454|Wiskott-Aldrich syndrome (eczema-thrombocytopenia)##EU176449|WAS|7454|Wiskott-Aldrich syndrome (eczema-thrombocytopenia)##BC067236|GLOD5|392465|glyoxalase domain containing 5##NM_001080489|GLOD5|392465|glyoxalase domain containing 5##X17254|GATA1|2623|GATA binding protein 1 (globin transcription factor 1)##BC009797|GATA1|2623|GATA binding protein 1 (globin transcription factor 1)##NM_002049|GATA1|2623|GATA binding protein 1 (globin transcription factor 1)##M30601|GATA1|2623|GATA binding protein 1 (globin transcription factor 1)##AK302926|HDAC6|10013|histone deacetylase 6##AL137696|HDAC6|10013|histone deacetylase 6	1.946129	denovo_WM_21:-9:0.981	denovo_WM_21:-110:0.965
chr11	65430453	65430631	reg1000998.p1	5.721	+	TSC_hg19_v1_chr11_-_65430427 NM_001145138 NM_001243984 NM_001243985 NM_021975	-101	-	TSC_hg19_v1_chr11_-_65430388 BC033522 BC011603 BC110830 BC014095 M62399 BC069248 AK308020 AK308478 AK303262	-228	-	TSC_hg19_v1_chr11_+_65408419 AB384994	-22139	+	TSC_hg19_v1_chr11_-_65430567 U88316	15	-	NM_001206833 NM_006388 NM_182709 NM_182710 AK313297 U74667 AK225100 AK226002	48955	+	BC117167 BC143290 BC143296 BC093032 TSC_hg19_v1_chr11_+_65479722 AK304664 BC064912 U67734 AB463743 HQ258620 BC013211 BC000166 U40989	49233	+	NM_001145138|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##NM_001243984|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##NM_001243985|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##NM_021975|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##BC033522|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##BC011603|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##BC110830|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##BC014095|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##M62399|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##BC069248|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##AK308020|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##AK308478|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##AK303262|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##NM_001206833|KAT5|10524|K(lysine) acetyltransferase 5##NM_006388|KAT5|10524|K(lysine) acetyltransferase 5##NM_182709|KAT5|10524|K(lysine) acetyltransferase 5##NM_182710|KAT5|10524|K(lysine) acetyltransferase 5##AK313297|KAT5|10524|K(lysine) acetyltransferase 5##U74667|KAT5|10524|K(lysine) acetyltransferase 5##AK225100|KAT5|10524|K(lysine) acetyltransferase 5##AK226002|KAT5|10524|K(lysine) acetyltransferase 5##BC117167|KAT5|10524|K(lysine) acetyltransferase 5##BC143290|KAT5|10524|K(lysine) acetyltransferase 5##BC143296|KAT5|10524|K(lysine) acetyltransferase 5##BC093032|KAT5|10524|K(lysine) acetyltransferase 5##AK304664|KAT5|10524|K(lysine) acetyltransferase 5##BC064912|KAT5|10524|K(lysine) acetyltransferase 5##U67734|KAT5|10524|K(lysine) acetyltransferase 5##HQ258620|KAT5|10524|K(lysine) acetyltransferase 5##BC013211|KAT5|10524|K(lysine) acetyltransferase 5##BC000166|KAT5|10524|K(lysine) acetyltransferase 5##U40989|KAT5|10524|K(lysine) acetyltransferase 5	0.0	
chr10	134149035	134149220	reg1000381.p2	5.717	+	TSC_hg19_v1_chr10_+_134145696 AK098652 BC050097 AK295953 AB051461 BC029902 NM_001143757 AK097418	-3417	+	TSC_hg19_v1_chr10_+_134145617 NM_001143758 NM_001143759 NM_030626	-3513	+	TSC_hg19_v1_chr10_-_134145360 AK098366 AK308956 BC042566	-3781	-	TSC_hg19_v1_chr10_+_134210703 NM_001098637 NM_138499 BC068574	61582	+	TSC_hg19_v1_chr10_+_134258657 BC030794 NM_173541	109556	+	TSC_hg19_v1_chr10_+_134351305 BC096280 BC096281 BC117515 AF273055 NM_005539	202185	+	AK098652|LRRC27|80313|leucine rich repeat containing 27##BC050097|LRRC27|80313|leucine rich repeat containing 27##AK295953|LRRC27|80313|leucine rich repeat containing 27##AB051461|LRRC27|80313|leucine rich repeat containing 27##BC029902|LRRC27|80313|leucine rich repeat containing 27##NM_001143757|LRRC27|80313|leucine rich repeat containing 27##AK097418|LRRC27|80313|leucine rich repeat containing 27##NM_001143758|LRRC27|80313|leucine rich repeat containing 27##NM_001143759|LRRC27|80313|leucine rich repeat containing 27##NM_030626|LRRC27|80313|leucine rich repeat containing 27##AK098366|STK32C|282974|serine/threonine kinase 32C##AK308956|STK32C|282974|serine/threonine kinase 32C##NM_001098637|PWWP2B|170394|PWWP domain containing 2B##NM_138499|PWWP2B|170394|PWWP domain containing 2B##BC068574|PWWP2B|170394|PWWP domain containing 2B##BC030794|C10orf91|170393|chromosome 10 open reading frame 91##NM_173541|C10orf91|170393|chromosome 10 open reading frame 91##BC096280|INPP5A|3632|inositol polyphosphate-5-phosphatase, 40kDa##BC096281|INPP5A|3632|inositol polyphosphate-5-phosphatase, 40kDa##BC117515|INPP5A|3632|inositol polyphosphate-5-phosphatase, 40kDa##AF273055|INPP5A|3632|inositol polyphosphate-5-phosphatase, 40kDa##NM_005539|INPP5A|3632|inositol polyphosphate-5-phosphatase, 40kDa	1.080358	denovo_WM_21:-14:0.386	denovo_WM_21:80:0.678	denovo_WM_21:-113:0.386
chr19	41256669	41256766	reg1000718.p2	5.716	+	TSC_hg19_v1_chr19_-_41256396 BC090894 AK123126	-315	-	TSC_hg19_v1_chr19_-_41256350 AK298068 AK310021	-360	-	BC020262 NM_198476	-890	-	NM_004596 TSC_hg19_v1_chr19_+_41256782 BC000405	59	+	TSC_hg19_v1_chr19_+_41257100 AK293140 AK313182 X06347 BC008290 AB464219 CU674198	482	+	NM_001202553	24364	+	BC090894|C19orf54|284325|chromosome 19 open reading frame 54##AK123126|C19orf54|284325|chromosome 19 open reading frame 54##AK298068|C19orf54|284325|chromosome 19 open reading frame 54##AK310021|C19orf54|284325|chromosome 19 open reading frame 54##BC020262|C19orf54|284325|chromosome 19 open reading frame 54##NM_198476|C19orf54|284325|chromosome 19 open reading frame 54##NM_004596|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##BC000405|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##AK293140|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##AK313182|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##X06347|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##BC008290|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##NM_001202553|MIA|8190|melanoma inhibitory activity	1.642528	denovo_WM_21:-9:0.981	denovo_WM_21:21:0.593
chr3	39425806	39425919	reg1000727.p1	5.712	+	TSC_hg19_v1_chr3_+_39424860 NM_017875 AK000558 AK225388 BC013194 CR457242	-872	+	AK314957 NM_005201 AF005210 BC107152 BC107159 D49919 BC074743	-54617	+	TSC_hg19_v1_chr3_-_39323217 AB464486 NM_001171174	-102655	-	BC070263 NM_002295 TSC_hg19_v1_chr3_+_39448210 BC066941 BC107567 BC005391 BC062714 D28372 AF503367 BC013827 BC050688 X15005 BC034537 BC053370 BC071968 BC010418 BC071693 BC018867 BC071969 BC073863	22348	+	BC071970 J03799 NM_001012321 BC068062 BC008867 S37431 DQ891146 DQ894326 AB464170 BT007219 CU679157 CU688210 X61156	23280	+	NM_182935 BC075796 AK127034 AK290187 BC022471	83257	+	NM_017875|SLC25A38|54977|solute carrier family 25, member 38##AK000558|SLC25A38|54977|solute carrier family 25, member 38##AK225388|SLC25A38|54977|solute carrier family 25, member 38##BC013194|SLC25A38|54977|solute carrier family 25, member 38##CR457242|SLC25A38|54977|solute carrier family 25, member 38##AK314957|CCR8|1237|chemokine (C-C motif) receptor 8##NM_005201|CCR8|1237|chemokine (C-C motif) receptor 8##AF005210|CCR8|1237|chemokine (C-C motif) receptor 8##BC107152|CCR8|1237|chemokine (C-C motif) receptor 8##BC107159|CCR8|1237|chemokine (C-C motif) receptor 8##D49919|CCR8|1237|chemokine (C-C motif) receptor 8##BC074743|CCR8|1237|chemokine (C-C motif) receptor 8##NM_001171174|CX3CR1|1524|chemokine (C-X3-C motif) receptor 1##BC070263|RPSA|3921|ribosomal protein SA##NM_002295|RPSA|3921|ribosomal protein SA##BC066941|RPSA|3921|ribosomal protein SA##BC107567|RPSA|3921|ribosomal protein SA##BC005391|RPSA|3921|ribosomal protein SA##BC062714|RPSA|3921|ribosomal protein SA##AF503367|RPSA|3921|ribosomal protein SA##BC013827|RPSA|3921|ribosomal protein SA##BC050688|RPSA|3921|ribosomal protein SA##X15005|RPSA|3921|ribosomal protein SA##BC034537|RPSA|3921|ribosomal protein SA##BC053370|RPSA|3921|ribosomal protein SA##BC071968|RPSA|3921|ribosomal protein SA##BC010418|RPSA|3921|ribosomal protein SA##BC071693|RPSA|3921|ribosomal protein SA##BC018867|RPSA|3921|ribosomal protein SA##BC071969|RPSA|3921|ribosomal protein SA##BC073863|RPSA|3921|ribosomal protein SA##BC071970|RPSA|3921|ribosomal protein SA##J03799|RPSA|3921|ribosomal protein SA##NM_001012321|RPSA|3921|ribosomal protein SA##BC068062|RPSA|3921|ribosomal protein SA##BC008867|RPSA|3921|ribosomal protein SA##S37431|RPSA|3921|ribosomal protein SA##DQ891146|RPSA|3921|ribosomal protein SA##DQ894326|RPSA|3921|ribosomal protein SA##BT007219|RPSA|3921|ribosomal protein SA##X61156|RPSA|3921|ribosomal protein SA##NM_182935|MOBP|4336|myelin-associated oligodendrocyte basic protein##BC075796|MOBP|4336|myelin-associated oligodendrocyte basic protein##AK127034|MOBP|4336|myelin-associated oligodendrocyte basic protein##AK290187|MOBP|4336|myelin-associated oligodendrocyte basic protein##BC022471|MOBP|4336|myelin-associated oligodendrocyte basic protein	0.014454	
chr19	20748616	20748730	reg1000915.p2	5.704	+	BC015765 TSC_hg19_v1_chr19_-_20748588 NM_001159293	-88	-	AK126842 BC022411 TSC_hg19_v1_chr19_-_20607776 BC036006 BC016785 BC017970	-140905	-	TSC_hg19_v1_chr19_+_20277998 BC027608 BC008936 BC117268 NM_052852	-470637	+	BC150651 AK096221 CR749233 TSC_hg19_v1_chr19_-_20844378 BC007116 BX648764 AK131567 BC107803 NM_001076675 NM_145297	95689	-	BC067843 TSC_hg19_v1_chr19_+_20959109	210436	+	NM_003429 BC068066 TSC_hg19_v1_chr19_+_21106090 U35376 M61866 BC008688	357413	+	BC015765|ZNF737|100129842|zinc finger protein 737##NM_001159293|ZNF737|100129842|zinc finger protein 737##BC022411|ZNF826P|664701|zinc finger protein 826, pseudogene##BC036006|ZNF826P|664701|zinc finger protein 826, pseudogene##BC016785|ZNF826P|664701|zinc finger protein 826, pseudogene##BC017970|ZNF826P|664701|zinc finger protein 826, pseudogene##BC027608|ZNF486|90649|zinc finger protein 486##BC008936|ZNF486|90649|zinc finger protein 486##BC117268|ZNF486|90649|zinc finger protein 486##NM_052852|ZNF486|90649|zinc finger protein 486##AK096221|ZNF626|199777|zinc finger protein 626##CR749233|ZNF626|199777|zinc finger protein 626##BC007116|ZNF626|199777|zinc finger protein 626##BX648764|ZNF626|199777|zinc finger protein 626##BC107803|ZNF626|199777|zinc finger protein 626##NM_001076675|ZNF626|199777|zinc finger protein 626##NM_145297|ZNF626|199777|zinc finger protein 626##NM_003429|ZNF85|7639|zinc finger protein 85##BC068066|ZNF85|7639|zinc finger protein 85##U35376|ZNF85|7639|zinc finger protein 85##M61866|ZNF85|7639|zinc finger protein 85##BC008688|ZNF85|7639|zinc finger protein 85	0.858649	denovo_WM_21:-2:0.848
chr20	60813280	60813390	reg1000345.p1	5.703	+	TSC_hg19_v1_chr20_-_60795335 AF140538 NM_007232	-18010	-	TSC_hg19_v1_chr20_+_60758094 NM_015666 AK316027 AK316325 AK299147 AK299189 AK299726	-55256	+	TSC_hg19_v1_chr20_+_60718830 AK125656 AK291485 AK299881 NM_198935 BC034494 BX640848 AK308765 BC068993 AB014593 DQ890908 EU176499 AB383958	-94574	+	AK291851 TSC_hg19_v1_chr20_+_60813576	241	+	TSC_hg19_v1_chr20_+_60813579 AF392447 AK000230 AK296595 AK315576 NM_014835 NM_144498	245	+	TSC_hg19_v1_chr20_+_60813616 AB018315 AY028168 BC000296 BC004455 BC018812	286	+	AF140538|HRH3|11255|histamine receptor H3##NM_007232|HRH3|11255|histamine receptor H3##NM_015666|GTPBP5|26164|GTP binding protein 5 (putative)##AK316027|GTPBP5|26164|GTP binding protein 5 (putative)##AK316325|GTPBP5|26164|GTP binding protein 5 (putative)##AK299147|GTPBP5|26164|GTP binding protein 5 (putative)##AK299189|GTPBP5|26164|GTP binding protein 5 (putative)##AK299726|GTPBP5|26164|GTP binding protein 5 (putative)##AK125656|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##AK291485|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##AK299881|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##NM_198935|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##BC034494|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##BX640848|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##AK308765|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##BC068993|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##AB014593|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##DQ890908|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##EU176499|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##AK291851|OSBPL2|9885|oxysterol binding protein-like 2##AF392447|OSBPL2|9885|oxysterol binding protein-like 2##AK000230|OSBPL2|9885|oxysterol binding protein-like 2##AK296595|OSBPL2|9885|oxysterol binding protein-like 2##AK315576|OSBPL2|9885|oxysterol binding protein-like 2##NM_014835|OSBPL2|9885|oxysterol binding protein-like 2##NM_144498|OSBPL2|9885|oxysterol binding protein-like 2##AB018315|OSBPL2|9885|oxysterol binding protein-like 2##AY028168|OSBPL2|9885|oxysterol binding protein-like 2##BC000296|OSBPL2|9885|oxysterol binding protein-like 2##BC004455|OSBPL2|9885|oxysterol binding protein-like 2##BC018812|OSBPL2|9885|oxysterol binding protein-like 2	0.038448	
chr7	66767518	66767635	reg1001028.p1	5.696	+	TSC_hg19_v1_chr7_-_66767458 BC029419 D38438 D38500 BC029368 BC038841 BC056507	-148	-	TSC_hg19_v1_chr7_+_66461858 BC042156 NM_018264 AK001762 BC015591 BC051888	-305718	+	CU688080 TSC_hg19_v1_chr7_-_66460574 BC065700 AF151855 AK001779 AY169963 NM_016038 AK289609	-307076	-	TSC_hg19_v1_chr7_+_66767639 AK023257 AK308931	32	+	TSC_hg19_v1_chr7_+_66767642 AK307290	72	+	TSC_hg19_v1_chr7_+_66767656 BC026058	81	+	BC029419|PMS2P4|5382|postmeiotic segregation increased 2 pseudogene 4##D38438|PMS2P4|5382|postmeiotic segregation increased 2 pseudogene 4##D38500|PMS2P4|5382|postmeiotic segregation increased 2 pseudogene 4##BC029368|PMS2P4|5382|postmeiotic segregation increased 2 pseudogene 4##BC038841|PMS2P4|5382|postmeiotic segregation increased 2 pseudogene 4##BC042156|TYW1|55253|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)##NM_018264|TYW1|55253|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)##AK001762|TYW1|55253|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)##BC015591|TYW1|55253|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)##BC051888|TYW1|55253|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)##BC065700|SBDS|51119|Shwachman-Bodian-Diamond syndrome##AF151855|SBDS|51119|Shwachman-Bodian-Diamond syndrome##AK001779|SBDS|51119|Shwachman-Bodian-Diamond syndrome##AY169963|SBDS|51119|Shwachman-Bodian-Diamond syndrome##NM_016038|SBDS|51119|Shwachman-Bodian-Diamond syndrome##AK289609|SBDS|51119|Shwachman-Bodian-Diamond syndrome##AK023257|STAG3L4|64940|stromal antigen 3-like 4##AK308931|STAG3L4|64940|stromal antigen 3-like 4##AK307290|STAG3L4|64940|stromal antigen 3-like 4##BC026058|STAG3L4|64940|stromal antigen 3-like 4	1.971073	denovo_WM_21:15:0.988	denovo_WM_21:-109:0.972
chr12	67662883	67663046	reg1000744.p2	5.692	+	TSC_hg19_v1_chr12_-_67072881 AK095519 NM_001178074 NM_021150	-590062	-	BC115393 BC115394 TSC_hg19_v1_chr12_-_67072757 AK307576	-590208	-	TSC_hg19_v1_chr12_+_66696305 NM_033647 BC143409 BC143411 AK290894 AK024464 AB527324 AF319995	-966635	+	NM_018448 TSC_hg19_v1_chr12_+_67663121 AK292456	138	+	TSC_hg19_v1_chr12_+_67663165 AL136810 AK096010 AB020636 AK314358	208	+	BC050341 TSC_hg19_v1_chr12_+_67663413 AB384533 EU832277 EU832362	466	+	AK095519|GRIP1|23426|glutamate receptor interacting protein 1##NM_001178074|GRIP1|23426|glutamate receptor interacting protein 1##NM_021150|GRIP1|23426|glutamate receptor interacting protein 1##BC115393|GRIP1|23426|glutamate receptor interacting protein 1##BC115394|GRIP1|23426|glutamate receptor interacting protein 1##AK307576|GRIP1|23426|glutamate receptor interacting protein 1##NM_033647|HELB|92797|helicase (DNA) B##BC143409|HELB|92797|helicase (DNA) B##BC143411|HELB|92797|helicase (DNA) B##AK290894|HELB|92797|helicase (DNA) B##AF319995|HELB|92797|helicase (DNA) B##NM_018448|CAND1|55832|cullin-associated and neddylation-dissociated 1##AK292456|CAND1|55832|cullin-associated and neddylation-dissociated 1##AL136810|CAND1|55832|cullin-associated and neddylation-dissociated 1##AK096010|CAND1|55832|cullin-associated and neddylation-dissociated 1##AB020636|CAND1|55832|cullin-associated and neddylation-dissociated 1##AK314358|CAND1|55832|cullin-associated and neddylation-dissociated 1##BC050341|CAND1|55832|cullin-associated and neddylation-dissociated 1##EU832277|CAND1|55832|cullin-associated and neddylation-dissociated 1##EU832362|CAND1|55832|cullin-associated and neddylation-dissociated 1	0.0	
chr19	50096741	50096886	reg1001000.p1	5.689	+	NM_020719	-1902	+	NM_000951 BC026032	-12206	+	AF132959 TSC_hg19_v1_chr19_-_50083814	-12999	-	TSC_hg19_v1_chr19_-_50143401 AF493920 BT006805 CR541944 CR541967 AB528722 DQ890730 DQ892428 DQ895642 BC016286 BC016318 NM_006270	46564	-	TSC_hg19_v1_chr19_+_50145476 AK024444 NM_021228 BC011662	48617	+	TSC_hg19_v1_chr19_-_50167984 AB102884 AB102887 CU679345 AB385059 DQ893455 DQ896306	71224	-	NM_020719|PRR12|57479|proline rich 12##NM_000951|PRRG2|5639|proline rich Gla (G-carboxyglutamic acid) 2##BC026032|PRRG2|5639|proline rich Gla (G-carboxyglutamic acid) 2##AF132959|NOSIP|51070|nitric oxide synthase interacting protein##AF493920|RRAS|6237|related RAS viral (r-ras) oncogene homolog##BT006805|RRAS|6237|related RAS viral (r-ras) oncogene homolog##CR541944|RRAS|6237|related RAS viral (r-ras) oncogene homolog##CR541967|RRAS|6237|related RAS viral (r-ras) oncogene homolog##DQ890730|RRAS|6237|related RAS viral (r-ras) oncogene homolog##DQ892428|RRAS|6237|related RAS viral (r-ras) oncogene homolog##DQ895642|RRAS|6237|related RAS viral (r-ras) oncogene homolog##BC016286|RRAS|6237|related RAS viral (r-ras) oncogene homolog##BC016318|RRAS|6237|related RAS viral (r-ras) oncogene homolog##NM_006270|RRAS|6237|related RAS viral (r-ras) oncogene homolog##AK024444|SCAF1|58506|SR-related CTD-associated factor 1##NM_021228|SCAF1|58506|SR-related CTD-associated factor 1##BC011662|SCAF1|58506|SR-related CTD-associated factor 1##AB102884|IRF3|3661|interferon regulatory factor 3##AB102887|IRF3|3661|interferon regulatory factor 3##DQ893455|IRF3|3661|interferon regulatory factor 3##DQ896306|IRF3|3661|interferon regulatory factor 3	2.364021	denovo_WM_21:20:0.990	denovo_WM_21:-56:0.694	denovo_WM_21:105:0.490
chr19	15490238	15490418	reg1000614.p1	5.687	+	TSC_hg19_v1_chr19_-_15443351 BC067129 BC091649 BC035266 BC047888	-46998	-	TSC_hg19_v1_chr19_-_15443306 BC038988	-47023	-	BC000156 TSC_hg19_v1_chr19_-_15443139	-47190	-	TSC_hg19_v1_chr19_-_15490599 AK308251 AK303640 BC037270 Y11997 NM_005858	278	-	DQ891853 DQ895043 TSC_hg19_v1_chr19_-_15529792 AB015332 AB025905 AJ243467 BC000713 AK001594 AK094736 AK225046 AK225291 AK310990	39447	-	TSC_hg19_v1_chr19_-_15529834 NM_014371 AK295956	39506	-	BC067129|BRD4|23476|bromodomain containing 4##BC091649|BRD4|23476|bromodomain containing 4##BC035266|BRD4|23476|bromodomain containing 4##BC047888|BRD4|23476|bromodomain containing 4##BC038988|BRD4|23476|bromodomain containing 4##BC000156|BRD4|23476|bromodomain containing 4##AK308251|AKAP8|10270|A kinase (PRKA) anchor protein 8##AK303640|AKAP8|10270|A kinase (PRKA) anchor protein 8##BC037270|AKAP8|10270|A kinase (PRKA) anchor protein 8##Y11997|AKAP8|10270|A kinase (PRKA) anchor protein 8##NM_005858|AKAP8|10270|A kinase (PRKA) anchor protein 8##DQ891853|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##DQ895043|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AB015332|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AB025905|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AJ243467|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##BC000713|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AK001594|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AK094736|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AK225046|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AK225291|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AK310990|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##NM_014371|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AK295956|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like	0.173416	
chr9	2015116	2015248	reg1000792.p1	5.671	+	AF130729 NM_181872	-964573	+	TSC_hg19_v1_chr9_+_1050370 Y19052	-964812	+	TSC_hg19_v1_chr9_+_1050356 BX647565 NM_006557 BC030204 NM_001130865 AF284221 AF284222	-964838	+	BC068252 AK296373 TSC_hg19_v1_chr9_+_2015346 AK299683 BC040029 NM_003070 NM_139045	114	+	TSC_hg19_v1_chr9_+_2621791 NM_001018056 NM_003383 L20470 AB208822	606625	+	BC136562 BC144245 L22431 TSC_hg19_v1_chr9_+_2622097	606892	+	AF130729|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_181872|DMRT2|10655|doublesex and mab-3 related transcription factor 2##Y19052|DMRT2|10655|doublesex and mab-3 related transcription factor 2##BX647565|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_006557|DMRT2|10655|doublesex and mab-3 related transcription factor 2##BC030204|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_001130865|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF284221|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF284222|DMRT2|10655|doublesex and mab-3 related transcription factor 2##BC068252|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AK296373|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AK299683|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##BC040029|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_003070|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_139045|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_001018056|VLDLR|7436|very low density lipoprotein receptor##NM_003383|VLDLR|7436|very low density lipoprotein receptor##L20470|VLDLR|7436|very low density lipoprotein receptor##AB208822|VLDLR|7436|very low density lipoprotein receptor##BC136562|VLDLR|7436|very low density lipoprotein receptor##BC144245|VLDLR|7436|very low density lipoprotein receptor##L22431|VLDLR|7436|very low density lipoprotein receptor	0.0	
chr19	7894583	7894696	reg1000023.p1	5.668	+	NM_001144904 NM_001144905 NM_001144906 NM_001144907 NM_001144908 NM_001144909 NM_001144910 NM_001144911 NM_014257 AK292278 BC038851 AF290887 AK304499 AK314704 AB015629 AF245219 AK298084 AK023750 BC110614 AY343913 DQ893779 AY042234 AY042235 AY042236 AY042237 AY042238 AY042239 AY042240	-66546	+	AY042221 AY042222 AY042223 AY042224 AY042225 AY042226 AY042227 AY042228 AY042229 AY042230 AY042231 AY042232 AY042233 AB527563 BC110615 AF290886 AK293089 TSC_hg19_v1_chr19_-_7812421 M98457 AK304190 AK313585 NM_001144893 NM_001144894 NM_001144895 NM_001144896 NM_001144897 NM_001144899 NM_021155	-82210	-	AY203939 BC093691 BC093693 BC143309 AY423706 NM_001244856 NM_198492	-97623	-	TSC_hg19_v1_chr19_+_7895113 NM_145245 BC014111	537	+	NM_001159944 AB449874	16767	+	AL442075 TSC_hg19_v1_chr19_-_7934829	40178	-	NM_001144904|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144905|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144906|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144907|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144908|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144909|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144910|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144911|CLEC4M|10332|C-type lectin domain family 4, member M##NM_014257|CLEC4M|10332|C-type lectin domain family 4, member M##AK292278|CLEC4M|10332|C-type lectin domain family 4, member M##BC038851|CLEC4M|10332|C-type lectin domain family 4, member M##AF290887|CLEC4M|10332|C-type lectin domain family 4, member M##AK304499|CLEC4M|10332|C-type lectin domain family 4, member M##AK314704|CLEC4M|10332|C-type lectin domain family 4, member M##AB015629|CLEC4M|10332|C-type lectin domain family 4, member M##AF245219|CLEC4M|10332|C-type lectin domain family 4, member M##AK298084|CLEC4M|10332|C-type lectin domain family 4, member M##AK023750|CLEC4M|10332|C-type lectin domain family 4, member M##BC110614|CLEC4M|10332|C-type lectin domain family 4, member M##AY343913|CLEC4M|10332|C-type lectin domain family 4, member M##DQ893779|CLEC4M|10332|C-type lectin domain family 4, member M##AY042234|CLEC4M|10332|C-type lectin domain family 4, member M##AY042235|CLEC4M|10332|C-type lectin domain family 4, member M##AY042236|CLEC4M|10332|C-type lectin domain family 4, member M##AY042237|CLEC4M|10332|C-type lectin domain family 4, member M##AY042238|CLEC4M|10332|C-type lectin domain family 4, member M##AY042239|CLEC4M|10332|C-type lectin domain family 4, member M##AY042240|CLEC4M|10332|C-type lectin domain family 4, member M##AY042221|CD209|30835|CD209 molecule##AY042222|CD209|30835|CD209 molecule##AY042223|CD209|30835|CD209 molecule##AY042224|CD209|30835|CD209 molecule##AY042225|CD209|30835|CD209 molecule##AY042226|CD209|30835|CD209 molecule##AY042227|CD209|30835|CD209 molecule##AY042228|CD209|30835|CD209 molecule##AY042229|CD209|30835|CD209 molecule##AY042230|CD209|30835|CD209 molecule##AY042231|CD209|30835|CD209 molecule##AY042232|CD209|30835|CD209 molecule##AY042233|CD209|30835|CD209 molecule##BC110615|CD209|30835|CD209 molecule##AF290886|CD209|30835|CD209 molecule##AK293089|CD209|30835|CD209 molecule##M98457|CD209|30835|CD209 molecule##AK304190|CD209|30835|CD209 molecule##AK313585|CD209|30835|CD209 molecule##NM_001144893|CD209|30835|CD209 molecule##NM_001144894|CD209|30835|CD209 molecule##NM_001144895|CD209|30835|CD209 molecule##NM_001144896|CD209|30835|CD209 molecule##NM_001144897|CD209|30835|CD209 molecule##NM_001144899|CD209|30835|CD209 molecule##NM_021155|CD209|30835|CD209 molecule##AY203939|CLEC4G|339390|C-type lectin domain family 4, member G##BC093691|CLEC4G|339390|C-type lectin domain family 4, member G##BC093693|CLEC4G|339390|C-type lectin domain family 4, member G##BC143309|CLEC4G|339390|C-type lectin domain family 4, member G##AY423706|CLEC4G|339390|C-type lectin domain family 4, member G##NM_001244856|CLEC4G|339390|C-type lectin domain family 4, member G##NM_198492|CLEC4G|339390|C-type lectin domain family 4, member G##NM_145245|EVI5L|115704|ecotropic viral integration site 5-like##BC014111|EVI5L|115704|ecotropic viral integration site 5-like##NM_001159944|EVI5L|115704|ecotropic viral integration site 5-like##AB449874|EVI5L|115704|ecotropic viral integration site 5-like##AL442075|FLJ22184|80164|putative uncharacterized protein FLJ22184	0.298814	denovo_WM_21:-45:0.299
chr10	102672582	102672707	reg1000841.p1	5.656	+	AF460991 AF460992 NM_001136123 NM_001243770 NM_018121	-319	+	TSC_hg19_v1_chr10_+_102505338 L25597 M89470 NM_000278 NM_003987 NM_003988 NM_003989 NM_003990	-167242	+	TSC_hg19_v1_chr10_+_102295705 AF395830 BC007719 AB528628 DQ892767 DQ896013	-376886	+	TSC_hg19_v1_chr10_+_102672719 AK292565 AL832343 AL833126 BC015131 BC047715 BC030565 BC064526 BC020915 BC073832 AL832383 AB385255	131	+	TSC_hg19_v1_chr10_+_102729286 BC051030 AK297431	56632	+	NM_001203244 NM_017893	59641	+	AF460991|FAM178A|55719|family with sequence similarity 178, member A##AF460992|FAM178A|55719|family with sequence similarity 178, member A##NM_001136123|FAM178A|55719|family with sequence similarity 178, member A##NM_001243770|FAM178A|55719|family with sequence similarity 178, member A##NM_018121|FAM178A|55719|family with sequence similarity 178, member A##L25597|PAX2|5076|paired box 2##M89470|PAX2|5076|paired box 2##NM_000278|PAX2|5076|paired box 2##NM_003987|PAX2|5076|paired box 2##NM_003988|PAX2|5076|paired box 2##NM_003989|PAX2|5076|paired box 2##NM_003990|PAX2|5076|paired box 2##AF395830|HIF1AN|55662|hypoxia inducible factor 1, alpha subunit inhibitor##BC007719|HIF1AN|55662|hypoxia inducible factor 1, alpha subunit inhibitor##DQ892767|HIF1AN|55662|hypoxia inducible factor 1, alpha subunit inhibitor##DQ896013|HIF1AN|55662|hypoxia inducible factor 1, alpha subunit inhibitor##AK292565|FAM178A|55719|family with sequence similarity 178, member A##AL832343|FAM178A|55719|family with sequence similarity 178, member A##AL833126|FAM178A|55719|family with sequence similarity 178, member A##BC015131|FAM178A|55719|family with sequence similarity 178, member A##BC047715|FAM178A|55719|family with sequence similarity 178, member A##BC030565|FAM178A|55719|family with sequence similarity 178, member A##BC064526|FAM178A|55719|family with sequence similarity 178, member A##BC020915|FAM178A|55719|family with sequence similarity 178, member A##BC073832|FAM178A|55719|family with sequence similarity 178, member A##AL832383|FAM178A|55719|family with sequence similarity 178, member A##BC051030|SEMA4G|57715|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G##AK297431|SEMA4G|57715|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G##NM_001203244|SEMA4G|57715|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G##NM_017893|SEMA4G|57715|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	0.744404	denovo_WM_21:3:0.744
chr10	13203405	13203537	reg1000946.p2	5.655	+	TSC_hg19_v1_chr10_+_13142135 NM_001008211 NM_001008212 NM_001008213 NM_021980 AK316171 AK303715 BC013876 BC032762 AF061034 AF420371 AF420372 AF420373	-61326	+	AB528751 AM393288 AL136562 TSC_hg19_v1_chr10_-_13043714 BC051334 NM_031455	-159772	-	TSC_hg19_v1_chr10_+_12391810 AF286366 AB528894 CU690184 DQ892464 DQ895676	-811694	+	TSC_hg19_v1_chr10_+_13203578 NM_018518 NM_182751 AK292701 AK055695 BC101727 AB042719 AL136840 BC143490	97	+	BC018068 NM_145314	72856	-	NM_001037537	138274	-	NM_001008211|OPTN|10133|optineurin##NM_001008212|OPTN|10133|optineurin##NM_001008213|OPTN|10133|optineurin##NM_021980|OPTN|10133|optineurin##AK316171|OPTN|10133|optineurin##AK303715|OPTN|10133|optineurin##BC013876|OPTN|10133|optineurin##BC032762|OPTN|10133|optineurin##AF061034|OPTN|10133|optineurin##AF420371|OPTN|10133|optineurin##AF420372|OPTN|10133|optineurin##AF420373|OPTN|10133|optineurin##AM393288|CCDC3|83643|coiled-coil domain containing 3##AL136562|CCDC3|83643|coiled-coil domain containing 3##BC051334|CCDC3|83643|coiled-coil domain containing 3##NM_031455|CCDC3|83643|coiled-coil domain containing 3##AF286366|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ892464|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ895676|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_018518|MCM10|55388|minichromosome maintenance complex component 10##NM_182751|MCM10|55388|minichromosome maintenance complex component 10##AK292701|MCM10|55388|minichromosome maintenance complex component 10##AK055695|MCM10|55388|minichromosome maintenance complex component 10##BC101727|MCM10|55388|minichromosome maintenance complex component 10##AB042719|MCM10|55388|minichromosome maintenance complex component 10##AL136840|MCM10|55388|minichromosome maintenance complex component 10##BC143490|MCM10|55388|minichromosome maintenance complex component 10##BC018068|UCMA|221044|upper zone of growth plate and cartilage matrix associated##NM_145314|UCMA|221044|upper zone of growth plate and cartilage matrix associated##NM_001037537|PHYH|5264|phytanoyl-CoA 2-hydroxylase	0.134386	
chr12	113518365	113518476	reg1000892.p1	5.653	+	NM_004416 BC048216	-22730	+	TSC_hg19_v1_chr12_+_113416323 NM_001032731 NM_002535 NM_016817 BC010625 BC053870 BC023637 AK292906 BC069052 BC049215 AK292796 M87284 M87434 AB590925 CU690608	-102080	+	AF063613 TSC_hg19_v1_chr12_+_113376306	-142080	+	CU676985 DQ892315 EU176685 EU832646 EU832723 AB384786 BC093724 BC143258 BC143261 BC143262 BC014420 TSC_hg19_v1_chr12_-_113573548 AK309562 NM_001193521	54992	-	AF086713 AB208935 AK294350 NM_001193520 NM_004658	55611	-	AK308987 NM_001144872	69184	+	NM_004416|DTX1|1840|deltex homolog 1 (Drosophila)##BC048216|DTX1|1840|deltex homolog 1 (Drosophila)##NM_001032731|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##NM_002535|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##NM_016817|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC010625|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC053870|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC023637|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##AK292906|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC069052|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC049215|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##AK292796|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##M87284|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##M87434|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##AF063613|OAS3|4940|2'-5'-oligoadenylate synthetase 3, 100kDa##DQ892315|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##EU176685|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##EU832646|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##EU832723|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC093724|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC143258|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC143261|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC143262|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC014420|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AK309562|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##NM_001193521|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AF086713|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AB208935|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AK294350|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##NM_001193520|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##NM_004658|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##NM_001144872|CCDC42B|387885|coiled-coil domain containing 42B	0.0	
chr5	162864438	162864561	reg1000988.p1	5.652	+	NM_000816 NM_198903 NM_198904 BC052926 BC036030 X15376 BC059389 BC069348 BC074795 AK315200 AK299640	-1369654	+	NM_001127648 AB590312 DQ890915	-1586740	+	NM_001127647	-1587108	+	TSC_hg19_v1_chr5_+_162864606 AK316234 NM_004060 NM_199246 AK297190 AK312913 BC007093 BX538035 D78341 L49504 BC000196	122	+	AB528197 AM392736 AM393438 FJ215684 AK094647 TSC_hg19_v1_chr5_-_162887097	22579	-	AK311957 TSC_hg19_v1_chr5_-_162887119 BC017934 BX538290 NM_145266	22634	-	NM_000816|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##NM_198903|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##NM_198904|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##BC052926|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##BC036030|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##X15376|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##BC059389|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##BC069348|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##BC074795|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##AK315200|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##AK299640|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##NM_001127648|GABRA1|2554|gamma-aminobutyric acid (GABA) A receptor, alpha 1##DQ890915|GABRA1|2554|gamma-aminobutyric acid (GABA) A receptor, alpha 1##NM_001127647|GABRA1|2554|gamma-aminobutyric acid (GABA) A receptor, alpha 1##AK316234|CCNG1|900|cyclin G1##NM_004060|CCNG1|900|cyclin G1##NM_199246|CCNG1|900|cyclin G1##AK297190|CCNG1|900|cyclin G1##AK312913|CCNG1|900|cyclin G1##BC007093|CCNG1|900|cyclin G1##BX538035|CCNG1|900|cyclin G1##D78341|CCNG1|900|cyclin G1##L49504|CCNG1|900|cyclin G1##BC000196|CCNG1|900|cyclin G1##AM392736|NUDCD2|134492|NudC domain containing 2##AM393438|NUDCD2|134492|NudC domain containing 2##FJ215684|NUDCD2|134492|NudC domain containing 2##AK311957|NUDCD2|134492|NudC domain containing 2##BC017934|NUDCD2|134492|NudC domain containing 2##BX538290|NUDCD2|134492|NudC domain containing 2##NM_145266|NUDCD2|134492|NudC domain containing 2	0.598247	denovo_WM_21:27:0.274	denovo_WM_21:-46:0.324
chr1	32110497	32110609	reg1000981.p1	5.648	+	CR542139 CU678186 CU680360 BC002773 AK301226 TSC_hg19_v1_chr1_-_32110478 AB018357 AB026628 BC012561 AY359011 AK001420	-78	-	BC035686 AK290521 NM_001525	-27260	+	AK027839 TSC_hg19_v1_chr1_+_32050592	-59999	+	NM_012392	284	-	M92642 TSC_hg19_v1_chr1_-_32169608	59029	-	TSC_hg19_v1_chr1_-_32169619 NM_001856	59140	-	CR542139|PEF1|553115|penta-EF-hand domain containing 1##BC002773|PEF1|553115|penta-EF-hand domain containing 1##AK301226|PEF1|553115|penta-EF-hand domain containing 1##AB018357|PEF1|553115|penta-EF-hand domain containing 1##AB026628|PEF1|553115|penta-EF-hand domain containing 1##BC012561|PEF1|553115|penta-EF-hand domain containing 1##AY359011|PEF1|553115|penta-EF-hand domain containing 1##AK001420|PEF1|553115|penta-EF-hand domain containing 1##BC035686|HCRTR1|3061|hypocretin (orexin) receptor 1##AK290521|HCRTR1|3061|hypocretin (orexin) receptor 1##NM_001525|HCRTR1|3061|hypocretin (orexin) receptor 1##AK027839|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##NM_012392|PEF1|553115|penta-EF-hand domain containing 1##M92642|COL16A1|1307|collagen, type XVI, alpha 1##NM_001856|COL16A1|1307|collagen, type XVI, alpha 1	0.653978	denovo_WM_21:4:0.654
chr2	8822043	8822172	reg1000719.p1	5.647	+	TSC_hg19_v1_chr2_+_7057585 NM_014746 BC050373 AK293854 D79983	-1764520	+	NM_080657 AK312670 AF442151 BC017969 TSC_hg19_v1_chr2_+_7017907 DQ891977 DQ895168 CU676130	-1804244	+	TSC_hg19_v1_chr2_-_7006650 AK308509	-1815404	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	96	+	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	155612	-	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	321714	-	NM_014746|RNF144A|9781|ring finger protein 144A##BC050373|RNF144A|9781|ring finger protein 144A##AK293854|RNF144A|9781|ring finger protein 144A##D79983|RNF144A|9781|ring finger protein 144A##NM_080657|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK312670|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AF442151|RSAD2|91543|radical S-adenosyl methionine domain containing 2##BC017969|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ891977|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ895168|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2	0.193529	
chr6	167000388	167000516	reg1001008.p1	5.644	+	TSC_hg19_v1_chr6_-_166796469 AF125101 AF151887 NM_016098	-203942	-	CU674406 TSC_hg19_v1_chr6_-_166796429 BC000810 AK312201 AK310934	-204043	-	TSC_hg19_v1_chr6_-_166756034 AF041429 BC028388	-244418	-	DQ891864 DQ895053 L07598 TSC_hg19_v1_chr6_-_167040629	40125	-	TSC_hg19_v1_chr6_-_167040662 X85106	40217	-	TSC_hg19_v1_chr6_-_167040713 BC002363 NM_021135	40266	-	AF125101|BRP44L|51660|brain protein 44-like##AF151887|BRP44L|51660|brain protein 44-like##NM_016098|BRP44L|51660|brain protein 44-like##BC000810|BRP44L|51660|brain protein 44-like##AK312201|BRP44L|51660|brain protein 44-like##AF041429|SFT2D1|113402|SFT2 domain containing 1##BC028388|SFT2D1|113402|SFT2 domain containing 1##DQ891864|RPS6KA2|6196|ribosomal protein S6 kinase, 90kDa, polypeptide 2##DQ895053|RPS6KA2|6196|ribosomal protein S6 kinase, 90kDa, polypeptide 2##L07598|RPS6KA2|6196|ribosomal protein S6 kinase, 90kDa, polypeptide 2##X85106|RPS6KA2|6196|ribosomal protein S6 kinase, 90kDa, polypeptide 2##BC002363|RPS6KA2|6196|ribosomal protein S6 kinase, 90kDa, polypeptide 2##NM_021135|RPS6KA2|6196|ribosomal protein S6 kinase, 90kDa, polypeptide 2	0.028954	
chr11	95523574	95523686	reg1000423.p2	5.636	+	AK021591 TSC_hg19_v1_chr11_-_95522975 BC026013 NM_144664	-664	-	TSC_hg19_v1_chr11_-_95522744 AK313727 BC028727	-897	-	CU693100 AM392906 DQ891214 DQ894397 TSC_hg19_v1_chr11_-_95522648 BX647586	-979	-	TSC_hg19_v1_chr11_+_95523702 NM_001243776 NM_001243777 NM_014679 BC001233 AK291245 AK293277 AK098647 BC031048 AY239292	45	+	D42054 BC039711 BC029385 AB385276 AY225092 CU691748 TSC_hg19_v1_chr11_+_95523869	210	+	AK293243 TSC_hg19_v1_chr11_-_95657092 AK302940 BC040432 AK291277	133421	-	AK021591|FAM76B|143684|family with sequence similarity 76, member B##BC026013|FAM76B|143684|family with sequence similarity 76, member B##NM_144664|FAM76B|143684|family with sequence similarity 76, member B##AK313727|FAM76B|143684|family with sequence similarity 76, member B##BC028727|FAM76B|143684|family with sequence similarity 76, member B##AM392906|FAM76B|143684|family with sequence similarity 76, member B##DQ891214|FAM76B|143684|family with sequence similarity 76, member B##DQ894397|FAM76B|143684|family with sequence similarity 76, member B##BX647586|FAM76B|143684|family with sequence similarity 76, member B##NM_001243776|CEP57|9702|centrosomal protein 57kDa##NM_001243777|CEP57|9702|centrosomal protein 57kDa##NM_014679|CEP57|9702|centrosomal protein 57kDa##BC001233|CEP57|9702|centrosomal protein 57kDa##AK291245|CEP57|9702|centrosomal protein 57kDa##AK293277|CEP57|9702|centrosomal protein 57kDa##AK098647|CEP57|9702|centrosomal protein 57kDa##BC031048|CEP57|9702|centrosomal protein 57kDa##AY239292|CEP57|9702|centrosomal protein 57kDa##D42054|CEP57|9702|centrosomal protein 57kDa##BC039711|CEP57|9702|centrosomal protein 57kDa##BC029385|CEP57|9702|centrosomal protein 57kDa##AY225092|CEP57|9702|centrosomal protein 57kDa##AK293243|MTMR2|8898|myotubularin related protein 2##AK302940|MTMR2|8898|myotubularin related protein 2##BC040432|MTMR2|8898|myotubularin related protein 2##AK291277|MTMR2|8898|myotubularin related protein 2	0.960427	denovo_WM_21:-2:0.960
chr19	49164444	49164555	reg1000524.p2	5.636	+	AF067662 AB018195 TSC_hg19_v1_chr19_-_49149299 AY358967 NM_001217	-15148	-	AB208807 TSC_hg19_v1_chr19_-_49140623 BC011965 U79283 AK310025 NM_001352	-23895	-	BC010671 NM_001204160 EF107108 AK125560	-36253	+	BC018654 BC018697 BC033207 NM_145807 BC021210	11774	-	NM_000511 NM_001097638 AK290277 D87942 BC001899 BC121066	34762	+	AK093389 AX748093 NM_182574 BC106047	55746	-	AF067662|CA11|770|carbonic anhydrase XI##AB018195|CA11|770|carbonic anhydrase XI##AY358967|CA11|770|carbonic anhydrase XI##NM_001217|CA11|770|carbonic anhydrase XI##AB208807|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##BC011965|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##U79283|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##AK310025|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##NM_001352|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##BC010671|SPHK2|56848|sphingosine kinase 2##NM_001204160|SPHK2|56848|sphingosine kinase 2##EF107108|SPHK2|56848|sphingosine kinase 2##AK125560|SPHK2|56848|sphingosine kinase 2##BC018654|NTN5|126147|netrin 5##BC018697|NTN5|126147|netrin 5##BC033207|NTN5|126147|netrin 5##NM_145807|NTN5|126147|netrin 5##BC021210|NTN5|126147|netrin 5##NM_000511|FUT2|2524|fucosyltransferase 2 (secretor status included)##NM_001097638|FUT2|2524|fucosyltransferase 2 (secretor status included)##AK290277|FUT2|2524|fucosyltransferase 2 (secretor status included)##D87942|FUT2|2524|fucosyltransferase 2 (secretor status included)##BC001899|FUT2|2524|fucosyltransferase 2 (secretor status included)##BC121066|FUT2|2524|fucosyltransferase 2 (secretor status included)##AK093389|MAMSTR|284358|MEF2 activating motif and SAP domain containing transcriptional regulator##NM_182574|MAMSTR|284358|MEF2 activating motif and SAP domain containing transcriptional regulator##BC106047|MAMSTR|284358|MEF2 activating motif and SAP domain containing transcriptional regulator	1.700366	denovo_WM_21:34:0.949	denovo_WM_21:-35:0.751
chr18	74204946	74205053	reg1000921.p1	5.635	+	BC108287 TSC_hg19_v1_chr18_-_74092260	-112749	-	BC105945 BC107486 NM_001037331 BC037871 AK093452 AX748136	-1065377	-	TSC_hg19_v1_chr18_+_72998258 AK223545 BC024152	-1206657	+	D86975 NM_014643 TSC_hg19_v1_chr18_-_74207166	2156	-	TSC_hg19_v1_chr18_-_74534239 BC032908	329240	-	TSC_hg19_v1_chr18_+_74534512 BX648028	329511	+	BC108287|ZNF516|9658|zinc finger protein 516##BC105945|C18orf62|284274|chromosome 18 open reading frame 62##BC107486|C18orf62|284274|chromosome 18 open reading frame 62##NM_001037331|C18orf62|284274|chromosome 18 open reading frame 62##BC037871|C18orf62|284274|chromosome 18 open reading frame 62##AK093452|C18orf62|284274|chromosome 18 open reading frame 62##AK223545|TSHZ1|10194|teashirt zinc finger homeobox 1##BC024152|TSHZ1|10194|teashirt zinc finger homeobox 1##D86975|ZNF516|9658|zinc finger protein 516##NM_014643|ZNF516|9658|zinc finger protein 516##BC032908|LOC100131655|100131655|uncharacterized LOC100131655##BX648028|ZNF236|7776|zinc finger protein 236	0.146674	
chr12	6579860	6579990	reg1000717.p1	5.631	+	TSC_hg19_v1_chr12_-_6579844 AF060538 BC023286 AK289498 AK296294 AK303137 AK309184 NM_014231 NM_016830 NM_199245	-111	-	NM_018009 TSC_hg19_v1_chr12_+_6561272 BC015017 AK223163 AK001005 AK002056 AK222956 AK098035 HQ258015	-18631	+	AK315732 NM_001242 BC012160 M63928 DQ892296 EU176659 AB590221 CU680244	-25779	+	BC000191 TSC_hg19_v1_chr12_-_6602417 BC014329 AB049959 AF151075 AF212248 NM_016497	22519	-	TSC_hg19_v1_chr12_+_6602542 D63880 BC016913	22624	+	AK125155 AK303310 TSC_hg19_v1_chr12_+_6603270 AK128354	23341	+	AF060538|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##BC023286|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##AK289498|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##AK296294|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##AK303137|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##AK309184|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##NM_014231|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##NM_016830|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##NM_199245|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##NM_018009|TAPBPL|55080|TAP binding protein-like##BC015017|TAPBPL|55080|TAP binding protein-like##AK223163|TAPBPL|55080|TAP binding protein-like##AK001005|TAPBPL|55080|TAP binding protein-like##AK002056|TAPBPL|55080|TAP binding protein-like##AK222956|TAPBPL|55080|TAP binding protein-like##AK098035|TAPBPL|55080|TAP binding protein-like##HQ258015|TAPBPL|55080|TAP binding protein-like##AK315732|CD27|939|CD27 molecule##NM_001242|CD27|939|CD27 molecule##BC012160|CD27|939|CD27 molecule##M63928|CD27|939|CD27 molecule##DQ892296|CD27|939|CD27 molecule##EU176659|CD27|939|CD27 molecule##BC000191|MRPL51|51258|mitochondrial ribosomal protein L51##BC014329|MRPL51|51258|mitochondrial ribosomal protein L51##AB049959|MRPL51|51258|mitochondrial ribosomal protein L51##AF151075|MRPL51|51258|mitochondrial ribosomal protein L51##AF212248|MRPL51|51258|mitochondrial ribosomal protein L51##NM_016497|MRPL51|51258|mitochondrial ribosomal protein L51##D63880|NCAPD2|9918|non-SMC condensin I complex, subunit D2##BC016913|NCAPD2|9918|non-SMC condensin I complex, subunit D2##AK125155|NCAPD2|9918|non-SMC condensin I complex, subunit D2##AK303310|NCAPD2|9918|non-SMC condensin I complex, subunit D2##AK128354|NCAPD2|9918|non-SMC condensin I complex, subunit D2	0.0	
chr19	6280014	6280098	reg1000734.p1	5.629	+	TSC_hg19_v1_chr19_-_6279967 D14539 NM_005934	-91	-	AB463904 TSC_hg19_v1_chr19_-_6279803	-253	-	TSC_hg19_v1_chr19_-_6199558 AK056073	-80509	-	AF347024 BC112122 BC112124 NM_133492	53544	-	BC002956 NM_006012 TSC_hg19_v1_chr19_+_6361541	81445	+	TSC_hg19_v1_chr19_+_6361559 AK311973 Z50853 EF036491 DQ895823 EU176368	81557	+	D14539|MLLT1|4298|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1##NM_005934|MLLT1|4298|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1##AF347024|ACER1|125981|alkaline ceramidase 1##BC112122|ACER1|125981|alkaline ceramidase 1##BC112124|ACER1|125981|alkaline ceramidase 1##NM_133492|ACER1|125981|alkaline ceramidase 1##BC002956|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)##NM_006012|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)##AK311973|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)##Z50853|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)##EF036491|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)##DQ895823|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)##EU176368|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	1.48218	denovo_WM_21:-5:0.510	denovo_WM_21:85:0.972
chr19	13210978	13211143	reg1001017.p1	5.625	+	TSC_hg19_v1_chr19_+_13205957 BC036885	-5070	+	HQ258405 TSC_hg19_v1_chr19_+_13135832 FJ861276 U07811	-75226	+	TSC_hg19_v1_chr19_+_13135745 L31881 BC117113 BC117115	-75300	+	TSC_hg19_v1_chr19_-_13213530 AK311530 M22637	2466	-	TSC_hg19_v1_chr19_-_13213673 BC002796	2637	-	NM_005583	2913	-	BC036885|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##HQ258405|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##FJ861276|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##U07811|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##L31881|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##BC117113|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##BC117115|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##M22637|LYL1|4066|lymphoblastic leukemia derived sequence 1##BC002796|LYL1|4066|lymphoblastic leukemia derived sequence 1##NM_005583|LYL1|4066|lymphoblastic leukemia derived sequence 1	0.0	
chr6_ssto_hap7	3493733	3493857	reg1000561.p1	5.618	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.391695	denovo_WM_21:-6:0.373
chr8	681214	681365	reg1000963.p1	5.615	+	AK290264 TSC_hg19_v1_chr8_-_681225 BC046243 NM_207332	-58	-	TSC_hg19_v1_chr8_-_681204 AK297476	-78	-	TSC_hg19_v1_chr8_-_681182 EU832095 EU832187 AF161437	-109	-	AF119818 AF119817 NM_004745	768260	+	NM_018941 TSC_hg19_v1_chr8_+_1711937 AK312486 AF123757 AF123758 AF123759 AF123760 AF123761	1030621	+	TSC_hg19_v1_chr8_+_1712012 BC007725	1030747	+	AK290264|ERICH1|157697|glutamate-rich 1##BC046243|ERICH1|157697|glutamate-rich 1##NM_207332|ERICH1|157697|glutamate-rich 1##AK297476|ERICH1|157697|glutamate-rich 1##EU832095|ERICH1|157697|glutamate-rich 1##EU832187|ERICH1|157697|glutamate-rich 1##AF161437|ERICH1|157697|glutamate-rich 1##AF119818|DLGAP2|9228|discs, large (Drosophila) homolog-associated protein 2##AF119817|DLGAP2|9228|discs, large (Drosophila) homolog-associated protein 2##NM_004745|DLGAP2|9228|discs, large (Drosophila) homolog-associated protein 2##NM_018941|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AK312486|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123757|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123758|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123759|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123760|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123761|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##BC007725|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)	0.01393	
chr3	48229914	48230042	reg1000650.p1	5.598	+	BC007401 BC018642 NM_001789 NM_201567 TSC_hg19_v1_chr3_-_48229900 M81933	-119	-	AF277722 AY137580 EU812118 CU675643 AB590275 DQ890753 DQ892919 DQ896168 AK290554 TSC_hg19_v1_chr3_-_48229511	-550	-	TSC_hg19_v1_chr3_-_48130743 AK054577 NM_001134364 NM_002375 NM_030885	-99278	-	NM_004345 BC055089 X89658 U19970 CU691114 AB590666 AY251531 Z38026 AY162210 CR457083 CR541961	34940	+	TSC_hg19_v1_chr3_+_48282593 BC028160 BC062690 AK298782 AY258146 NM_016089 AL832831 BC006247 BC048798 BC005859 AF114816 AF114817 AB463372	52632	+	DQ892283 DQ895483 AK308970 AF051941 TSC_hg19_v1_chr3_-_48342858 U90449 BC001808 BC012828 NM_005793 AK222555 AK294809 AK307332 AK297364 AK309090	112873	-	BC007401|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##BC018642|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##NM_001789|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##NM_201567|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##M81933|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##AF277722|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##AY137580|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##EU812118|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##DQ890753|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##DQ892919|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##DQ896168|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##AK290554|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##AK054577|MAP4|4134|microtubule-associated protein 4##NM_001134364|MAP4|4134|microtubule-associated protein 4##NM_002375|MAP4|4134|microtubule-associated protein 4##NM_030885|MAP4|4134|microtubule-associated protein 4##NM_004345|CAMP|820|cathelicidin antimicrobial peptide##BC055089|CAMP|820|cathelicidin antimicrobial peptide##X89658|CAMP|820|cathelicidin antimicrobial peptide##U19970|CAMP|820|cathelicidin antimicrobial peptide##AY251531|CAMP|820|cathelicidin antimicrobial peptide##Z38026|CAMP|820|cathelicidin antimicrobial peptide##AY162210|CAMP|820|cathelicidin antimicrobial peptide##CR457083|CAMP|820|cathelicidin antimicrobial peptide##CR541961|CAMP|820|cathelicidin antimicrobial peptide##BC028160|ZNF589|51385|zinc finger protein 589##BC062690|ZNF589|51385|zinc finger protein 589##AK298782|ZNF589|51385|zinc finger protein 589##AY258146|ZNF589|51385|zinc finger protein 589##NM_016089|ZNF589|51385|zinc finger protein 589##AL832831|ZNF589|51385|zinc finger protein 589##BC006247|ZNF589|51385|zinc finger protein 589##BC048798|ZNF589|51385|zinc finger protein 589##BC005859|ZNF589|51385|zinc finger protein 589##AF114816|ZNF589|51385|zinc finger protein 589##AF114817|ZNF589|51385|zinc finger protein 589##DQ892283|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##DQ895483|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##AK308970|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##AF051941|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##U90449|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##BC001808|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##BC012828|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##NM_005793|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##AK222555|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##AK294809|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##AK297364|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)	1.054022	denovo_WM_21:39:0.976
chr19	40931737	40931871	reg1000972.p1	5.592	+	AF321191 AF321192 NM_020956 NM_181882 BC067266	-12533	-	AK302301 AK301713 AK292228 BC034501 NM_144685 AK057380	-35717	-	BC000553 TSC_hg19_v1_chr19_+_40872852	-59021	+	BC002670 AF366402 AF117959 AK222970 AK223011 TSC_hg19_v1_chr19_-_40931900 AK074652 NM_013376	101	-	AF192529 NM_013368	16700	-	TSC_hg19_v1_chr19_-_40950200 BC014061 AK074604	18407	-	AF321191|PRX|57716|periaxin##AF321192|PRX|57716|periaxin##NM_020956|PRX|57716|periaxin##NM_181882|PRX|57716|periaxin##BC067266|PRX|57716|periaxin##AK302301|HIPK4|147746|homeodomain interacting protein kinase 4##AK301713|HIPK4|147746|homeodomain interacting protein kinase 4##AK292228|HIPK4|147746|homeodomain interacting protein kinase 4##BC034501|HIPK4|147746|homeodomain interacting protein kinase 4##NM_144685|HIPK4|147746|homeodomain interacting protein kinase 4##AK057380|HIPK4|147746|homeodomain interacting protein kinase 4##BC000553|PLD3|23646|phospholipase D family, member 3##BC002670|SERTAD1|29950|SERTA domain containing 1##AF366402|SERTAD1|29950|SERTA domain containing 1##AF117959|SERTAD1|29950|SERTA domain containing 1##AK222970|SERTAD1|29950|SERTA domain containing 1##AK223011|SERTAD1|29950|SERTA domain containing 1##AK074652|SERTAD1|29950|SERTA domain containing 1##NM_013376|SERTAD1|29950|SERTA domain containing 1##AF192529|SERTAD3|29946|SERTA domain containing 3##NM_013368|SERTAD3|29946|SERTA domain containing 3##BC014061|SERTAD3|29946|SERTA domain containing 3##AK074604|SERTAD3|29946|SERTA domain containing 3	2.017753	denovo_WM_21:-10:0.986	denovo_WM_21:20:0.913
chr11	64546268	64546404	reg1000830.p1	5.584	+	L49345 L49380 BC032676 BC020217 BC069273 TSC_hg19_v1_chr11_-_64546242 D26120 D26121 AK301803 BC034451 NM_004630 NM_201995 NM_201997 NM_201998	-78	-	Y08766 TSC_hg19_v1_chr11_-_64546170	-178	-	TSC_hg19_v1_chr11_-_64546015 BC008080 BC008724 AK296237 AK299705	-331	-	CU690514 BC039839 AK298383 AK304495 BC047865 NM_004579	24330	-	TSC_hg19_v1_chr11_-_64578027 BC002544 AJ297485 AJ297486 NM_130800 NM_130801	31721	-	TSC_hg19_v1_chr11_-_64578206 NM_000244 NM_130799 U93236 AJ297487 NM_130802	31858	-	L49345|SF1|7536|splicing factor 1##L49380|SF1|7536|splicing factor 1##BC032676|SF1|7536|splicing factor 1##BC020217|SF1|7536|splicing factor 1##BC069273|SF1|7536|splicing factor 1##D26120|SF1|7536|splicing factor 1##D26121|SF1|7536|splicing factor 1##AK301803|SF1|7536|splicing factor 1##BC034451|SF1|7536|splicing factor 1##NM_004630|SF1|7536|splicing factor 1##NM_201995|SF1|7536|splicing factor 1##NM_201997|SF1|7536|splicing factor 1##NM_201998|SF1|7536|splicing factor 1##Y08766|SF1|7536|splicing factor 1##BC008080|SF1|7536|splicing factor 1##BC008724|SF1|7536|splicing factor 1##AK296237|SF1|7536|splicing factor 1##AK299705|SF1|7536|splicing factor 1##BC039839|MAP4K2|5871|mitogen-activated protein kinase kinase kinase kinase 2##AK298383|MAP4K2|5871|mitogen-activated protein kinase kinase kinase kinase 2##AK304495|MAP4K2|5871|mitogen-activated protein kinase kinase kinase kinase 2##BC047865|MAP4K2|5871|mitogen-activated protein kinase kinase kinase kinase 2##NM_004579|MAP4K2|5871|mitogen-activated protein kinase kinase kinase kinase 2##BC002544|MEN1|4221|multiple endocrine neoplasia I##AJ297485|MEN1|4221|multiple endocrine neoplasia I##AJ297486|MEN1|4221|multiple endocrine neoplasia I##NM_130800|MEN1|4221|multiple endocrine neoplasia I##NM_130801|MEN1|4221|multiple endocrine neoplasia I##NM_000244|MEN1|4221|multiple endocrine neoplasia I##NM_130799|MEN1|4221|multiple endocrine neoplasia I##U93236|MEN1|4221|multiple endocrine neoplasia I##AJ297487|MEN1|4221|multiple endocrine neoplasia I##NM_130802|MEN1|4221|multiple endocrine neoplasia I	0.988023	denovo_WM_21:-14:0.988
chr10	76585948	76586107	reg1000111.p1	5.581	+	TSC_hg19_v1_chr10_+_75936554 DQ890624 EU176483	-649440	+	TSC_hg19_v1_chr10_+_75936527 BC003568 U90339	-649497	+	U50196 TSC_hg19_v1_chr10_+_75936520 AK290633 AK302706	-649545	+	TSC_hg19_v1_chr10_+_76586357 AK074816 BC014143 BC048199 NM_012330 AF217500 BC150618	327	+	AY686755 NM_001003892 BC137321 BC137322	232278	-	AB027004 AB103375 NM_016364	273220	-	DQ890624|ADK|132|adenosine kinase##EU176483|ADK|132|adenosine kinase##BC003568|ADK|132|adenosine kinase##U90339|ADK|132|adenosine kinase##U50196|ADK|132|adenosine kinase##AK290633|ADK|132|adenosine kinase##AK302706|ADK|132|adenosine kinase##AK074816|KAT6B|23522|K(lysine) acetyltransferase 6B##BC014143|KAT6B|23522|K(lysine) acetyltransferase 6B##BC048199|KAT6B|23522|K(lysine) acetyltransferase 6B##NM_012330|KAT6B|23522|K(lysine) acetyltransferase 6B##AF217500|KAT6B|23522|K(lysine) acetyltransferase 6B##BC150618|KAT6B|23522|K(lysine) acetyltransferase 6B##AY686755|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##NM_001003892|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##BC137321|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##BC137322|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##AB027004|DUSP13|51207|dual specificity phosphatase 13##AB103375|DUSP13|51207|dual specificity phosphatase 13##NM_016364|DUSP13|51207|dual specificity phosphatase 13	0.613925	denovo_WM_21:42:0.319	denovo_WM_21:-93:0.261
chr4	89513491	89513610	reg1000952.p1	5.576	+	TSC_hg19_v1_chr4_-_89444931 NM_001042616 NM_032906	-68598	-	TSC_hg19_v1_chr4_-_89444916 AB206972 BC007876 AK312082	-68629	-	TSC_hg19_v1_chr4_+_89378269 AY337518 NM_016323 AB027289 BC140716	-135228	+	AK296379 TSC_hg19_v1_chr4_+_89513611 AK289990 BC038960 D25215 NM_014606	71	+	BC104883 TSC_hg19_v1_chr4_-_89618996 AL834329 AK054689 BC022544 NM_153757	105425	-	AB385402 AB020721 TSC_hg19_v1_chr4_-_89744384 AK027138 BC033006 BC086875 BC058029 AK296932 NM_001015045 AK091787 AX747185	230731	-	NM_001042616|PIGY|84992|phosphatidylinositol glycan anchor biosynthesis, class Y##NM_032906|PIGY|84992|phosphatidylinositol glycan anchor biosynthesis, class Y##AB206972|PIGY|84992|phosphatidylinositol glycan anchor biosynthesis, class Y##BC007876|PIGY|84992|phosphatidylinositol glycan anchor biosynthesis, class Y##AK312082|PIGY|84992|phosphatidylinositol glycan anchor biosynthesis, class Y##AY337518|HERC5|51191|hect domain and RLD 5##NM_016323|HERC5|51191|hect domain and RLD 5##AB027289|HERC5|51191|hect domain and RLD 5##BC140716|HERC5|51191|hect domain and RLD 5##AK296379|HERC3|8916|hect domain and RLD 3##AK289990|HERC3|8916|hect domain and RLD 3##BC038960|HERC3|8916|hect domain and RLD 3##D25215|HERC3|8916|hect domain and RLD 3##NM_014606|HERC3|8916|hect domain and RLD 3##BC104883|NAP1L5|266812|nucleosome assembly protein 1-like 5##AL834329|NAP1L5|266812|nucleosome assembly protein 1-like 5##AK054689|NAP1L5|266812|nucleosome assembly protein 1-like 5##BC022544|NAP1L5|266812|nucleosome assembly protein 1-like 5##NM_153757|NAP1L5|266812|nucleosome assembly protein 1-like 5##AB020721|FAM13A|10144|family with sequence similarity 13, member A##AK027138|FAM13A|10144|family with sequence similarity 13, member A##BC033006|FAM13A|10144|family with sequence similarity 13, member A##BC086875|FAM13A|10144|family with sequence similarity 13, member A##BC058029|FAM13A|10144|family with sequence similarity 13, member A##AK296932|FAM13A|10144|family with sequence similarity 13, member A##NM_001015045|FAM13A|10144|family with sequence similarity 13, member A##AK091787|FAM13A|10144|family with sequence similarity 13, member A	0.762109	denovo_WM_21:16:0.751
chr2	109815908	109816005	reg1000653.p2	5.573	+	NM_001099289 DQ307286	-69893	+	TSC_hg19_v1_chr2_-_109605671 AK313781 CR749352 AF130988 NM_022336	-210209	-	TSC_hg19_v1_chr2_-_109605623 AK296936	-210337	-	CU676536 TSC_hg19_v1_chr2_-_110371486 BC020502 AK295560 AK292038 AK092033 AF146760	555525	-	AK294427 BC050345 TSC_hg19_v1_chr2_-_110371735 AK021681 NM_144710 NM_178584	555769	-	BC036652 TSC_hg19_v1_chr2_+_110371940 BC066772 NM_023016 AK025523	555989	+	NM_001099289|SH3RF3|344558|SH3 domain containing ring finger 3##DQ307286|SH3RF3|344558|SH3 domain containing ring finger 3##AK313781|EDAR|10913|ectodysplasin A receptor##CR749352|EDAR|10913|ectodysplasin A receptor##AF130988|EDAR|10913|ectodysplasin A receptor##NM_022336|EDAR|10913|ectodysplasin A receptor##AK296936|EDAR|10913|ectodysplasin A receptor##BC020502|SEPT10|151011|septin 10##AK295560|SEPT10|151011|septin 10##AK292038|SEPT10|151011|septin 10##AK092033|SEPT10|151011|septin 10##AF146760|SEPT10|151011|septin 10##AK294427|SEPT10|151011|septin 10##BC050345|SEPT10|151011|septin 10##AK021681|SEPT10|151011|septin 10##NM_144710|SEPT10|151011|septin 10##NM_178584|SEPT10|151011|septin 10##BC036652|ANKRD57|65124|ankyrin repeat domain 57##BC066772|ANKRD57|65124|ankyrin repeat domain 57##NM_023016|ANKRD57|65124|ankyrin repeat domain 57##AK025523|ANKRD57|65124|ankyrin repeat domain 57	0.0	
chrX	62005989	62006074	reg1000704.p1	5.568	+	EU446736 TSC_hg19_v1_chrX_-_57936884 BC059356 AK292686 AK122815 NM_007156	-4069072	-	TSC_hg19_v1_chrX_+_57618452 AK289766 AB384714	-4387571	+	NM_007157	-4387763	+	BC112360 TSC_hg19_v1_chrX_-_62571212 AK126931 AL833314 NM_001012968	565168	-	TSC_hg19_v1_chrX_-_62648209 BC048208 AK129670	642236	-	TSC_hg19_v1_chrX_-_62780938 AK001756 AL080202	774836	-	EU446736|ZXDA|7789|zinc finger, X-linked, duplicated A##BC059356|ZXDA|7789|zinc finger, X-linked, duplicated A##AK292686|ZXDA|7789|zinc finger, X-linked, duplicated A##AK122815|ZXDA|7789|zinc finger, X-linked, duplicated A##NM_007156|ZXDA|7789|zinc finger, X-linked, duplicated A##AK289766|ZXDB|158586|zinc finger, X-linked, duplicated B##NM_007157|ZXDB|158586|zinc finger, X-linked, duplicated B##BC112360|SPIN4|139886|spindlin family, member 4##AK126931|SPIN4|139886|spindlin family, member 4##AL833314|SPIN4|139886|spindlin family, member 4##NM_001012968|SPIN4|139886|spindlin family, member 4##BC048208|LOC92249|92249|uncharacterized LOC92249##AK129670|LOC92249|92249|uncharacterized LOC92249##AK001756|LOC92249|92249|uncharacterized LOC92249##AL080202|LOC92249|92249|uncharacterized LOC92249	0.0	
chr4	89205749	89205872	reg1001072.p1	5.552	+	TSC_hg19_v1_chr4_-_89205714 AL834271 AK314417 AK054678 AY157615 AY994097 AF351614 BC020850 BC037552	-83	-	BC021281 NM_004827 AF151530	-125773	-	TSC_hg19_v1_chr4_+_88928803 BC112261 BC112263 NM_000297 U50928	-277002	+	AY435431 NM_152542 TSC_hg19_v1_chr4_-_89205908 AL834167	93	-	TSC_hg19_v1_chr4_+_89299890 AF336798 AY653201 AY653202 AY653203 NM_001165136 NM_017912	94072	+	AK295832 TSC_hg19_v1_chr4_+_89300006 BC042047	94187	+	AL834271|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##AK314417|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##AK054678|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##AY157615|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##AY994097|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##AF351614|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##BC020850|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##BC037552|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##BC021281|ABCG2|9429|ATP-binding cassette, sub-family G (WHITE), member 2##NM_004827|ABCG2|9429|ATP-binding cassette, sub-family G (WHITE), member 2##BC112261|PKD2|5311|polycystic kidney disease 2 (autosomal dominant)##BC112263|PKD2|5311|polycystic kidney disease 2 (autosomal dominant)##NM_000297|PKD2|5311|polycystic kidney disease 2 (autosomal dominant)##U50928|PKD2|5311|polycystic kidney disease 2 (autosomal dominant)##AY435431|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##NM_152542|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##AL834167|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##AF336798|HERC6|55008|hect domain and RLD 6##AY653201|HERC6|55008|hect domain and RLD 6##AY653202|HERC6|55008|hect domain and RLD 6##AY653203|HERC6|55008|hect domain and RLD 6##NM_001165136|HERC6|55008|hect domain and RLD 6##NM_017912|HERC6|55008|hect domain and RLD 6##AK295832|HERC6|55008|hect domain and RLD 6##BC042047|HERC6|55008|hect domain and RLD 6	0.038448	
chr22	24308933	24309037	reg1000887.p1	5.551	+	CR456929 L38503 CU013079 CU013097 CU013367 CU013385 DQ890742 AB528145 CR456500 BC071700 CR456374 BC146929 BC146936 NM_001080843 BC002415 AK312043 NM_000854 BC146940 BC146943	-5598	-	TSC_hg19_v1_chr22_+_24236595 BC007676 BC008914 M25639 BC053376 BC051440 CR456520 CU013120 CU013408 DQ892195 DQ895390 AB463103 AF469046 BT007148 CR407644 CR541651 Z23063 EF492869 M95775	-72344	+	L10612 TSC_hg19_v1_chr22_+_24236591	-72396	+	NM_001084393 AK296110 AK296189 AK298326	69	+	BT006970 CU012991 CU013279 DQ891571 DQ894765 U84143 AK298326 AK292044 CR456431 BC005971 AK296189 AK304122 AK315943 BC015508 NM_001084392	7655	-	NM_001355 U49785	13033	-	CR456929|GSTT2|2953|glutathione S-transferase theta 2##L38503|GSTT2|2953|glutathione S-transferase theta 2##CU013079|GSTT2|2953|glutathione S-transferase theta 2##CU013097|GSTT2|2953|glutathione S-transferase theta 2##CU013367|GSTT2|2953|glutathione S-transferase theta 2##CU013385|GSTT2|2953|glutathione S-transferase theta 2##DQ890742|GSTT2|2953|glutathione S-transferase theta 2##CR456500|GSTT2|2953|glutathione S-transferase theta 2##BC071700|GSTT2B|653689|glutathione S-transferase theta 2B (gene/pseudogene)##CR456374|GSTT2|2953|glutathione S-transferase theta 2##BC146929|GSTT2|2953|glutathione S-transferase theta 2##BC146936|GSTT2B|653689|glutathione S-transferase theta 2B (gene/pseudogene)##NM_001080843|GSTT2B|653689|glutathione S-transferase theta 2B (gene/pseudogene)##BC002415|GSTT2|2953|glutathione S-transferase theta 2##AK312043|GSTT2|2953|glutathione S-transferase theta 2##NM_000854|GSTT2|2953|glutathione S-transferase theta 2##BC146940|GSTT2|2953|glutathione S-transferase theta 2##BC146943|GSTT2|2953|glutathione S-transferase theta 2##BC007676|MIF|4282|macrophage migration inhibitory factor (glycosylation-inhibiting factor)##BC008914|MIF|4282|macrophage migration inhibitory factor (glycosylation-inhibiting factor)##M25639|MIF|4282|macrophage migration inhibitory factor (glycosylation-inhibiting factor)##BC053376|MIF|4282|macrophage migration inhibitory factor (glycosylation-inhibiting factor)##BC051440|MIF|4282|macrophage migration inhibitory factor (glycosylation-inhibiting factor)##CR456520|MIF|4282|macrophage migration inhibitory factor (glycosylation-inhibiting factor)##CU013120|MIF|4282|macrophage migration inhibitory factor (glycosylation-inhibiting factor)##CU013408|MIF|4282|macrophage migration inhibitory factor (glycosylation-inhibiting factor)##DQ892195|MIF|4282|macrophage migration inhibitory factor (glycosylation-inhibiting factor)##DQ895390|MIF|4282|macrophage migration inhibitory factor (glycosylation-inhibiting factor)##AF469046|MIF|4282|macrophage migration inhibitory factor (glycosylation-inhibiting factor)##BT007148|MIF|4282|macrophage migration inhibitory factor (glycosylation-inhibiting factor)##CR407644|MIF|4282|macrophage migration inhibitory factor (glycosylation-inhibiting factor)##CR541651|MIF|4282|macrophage migration inhibitory factor (glycosylation-inhibiting factor)##Z23063|MIF|4282|macrophage migration inhibitory factor (glycosylation-inhibiting factor)##M95775|MIF|4282|macrophage migration inhibitory factor (glycosylation-inhibiting factor)##L10612|MIF|4282|macrophage migration inhibitory factor (glycosylation-inhibiting factor)##NM_001084393|DDTL|100037417|D-dopachrome tautomerase-like##AK296110|DDTL|100037417|D-dopachrome tautomerase-like##BT006970|DDT|1652|D-dopachrome tautomerase##CU012991|DDT|1652|D-dopachrome tautomerase##CU013279|DDT|1652|D-dopachrome tautomerase##DQ891571|DDT|1652|D-dopachrome tautomerase##DQ894765|DDT|1652|D-dopachrome tautomerase##U84143|DDT|1652|D-dopachrome tautomerase##AK292044|DDT|1652|D-dopachrome tautomerase##CR456431|DDT|1652|D-dopachrome tautomerase##BC005971|DDT|1652|D-dopachrome tautomerase##BC015508|DDT|1652|D-dopachrome tautomerase##NM_001084392|DDT|1652|D-dopachrome tautomerase##NM_001355|DDT|1652|D-dopachrome tautomerase##U49785|DDT|1652|D-dopachrome tautomerase	1.877005	denovo_WM_21:11:0.986	denovo_WM_21:-18:0.891
chr22	44208145	44208244	reg1000938.p1	5.550	+	BC039315 TSC_hg19_v1_chr22_-_44208121 AK296679 AK292498 AK292411 AK058069 NM_022785 NM_198856	-53	-	TSC_hg19_v1_chr22_+_43808109 AK289774	-400077	+	TSC_hg19_v1_chr22_+_43808019 AK290541 AK297276 AK299516 AK299531 NM_001044370	-400177	+	AK295399 AF115311 AL590119 AB587375 CR456588 CU013188 CU013476 DQ892373 DQ895583 CU688978 CU692628 BC022459 TSC_hg19_v1_chr22_-_44258315 AF176342 AF251263 AK313048 AK294622 AF188698 BC028171 NM_014351 BC030665	50109	-	BC104839 BC104843 BC143696 BC031820 AK056648 AK127172 NM_001177675 NM_138814	79655	-	AK025665 AL138578 NM_025225 TSC_hg19_v1_chr22_+_44319651 AK308995	111450	+	BC039315|EFCAB6|64800|EF-hand calcium binding domain 6##AK296679|EFCAB6|64800|EF-hand calcium binding domain 6##AK292498|EFCAB6|64800|EF-hand calcium binding domain 6##AK292411|EFCAB6|64800|EF-hand calcium binding domain 6##AK058069|EFCAB6|64800|EF-hand calcium binding domain 6##NM_022785|EFCAB6|64800|EF-hand calcium binding domain 6##NM_198856|EFCAB6|64800|EF-hand calcium binding domain 6##AK289774|MPPED1|758|metallophosphoesterase domain containing 1##AK290541|MPPED1|758|metallophosphoesterase domain containing 1##AK297276|MPPED1|758|metallophosphoesterase domain containing 1##AK299516|MPPED1|758|metallophosphoesterase domain containing 1##AK299531|MPPED1|758|metallophosphoesterase domain containing 1##NM_001044370|MPPED1|758|metallophosphoesterase domain containing 1##AK295399|SULT4A1|25830|sulfotransferase family 4A, member 1##AF115311|SULT4A1|25830|sulfotransferase family 4A, member 1##AL590119|SULT4A1|25830|sulfotransferase family 4A, member 1##CR456588|SULT4A1|25830|sulfotransferase family 4A, member 1##CU013188|SULT4A1|25830|sulfotransferase family 4A, member 1##CU013476|SULT4A1|25830|sulfotransferase family 4A, member 1##DQ892373|SULT4A1|25830|sulfotransferase family 4A, member 1##DQ895583|SULT4A1|25830|sulfotransferase family 4A, member 1##BC022459|SULT4A1|25830|sulfotransferase family 4A, member 1##AF176342|SULT4A1|25830|sulfotransferase family 4A, member 1##AF251263|SULT4A1|25830|sulfotransferase family 4A, member 1##AK313048|SULT4A1|25830|sulfotransferase family 4A, member 1##AK294622|SULT4A1|25830|sulfotransferase family 4A, member 1##AF188698|SULT4A1|25830|sulfotransferase family 4A, member 1##BC028171|SULT4A1|25830|sulfotransferase family 4A, member 1##NM_014351|SULT4A1|25830|sulfotransferase family 4A, member 1##BC030665|SULT4A1|25830|sulfotransferase family 4A, member 1##BC104839|PNPLA5|150379|patatin-like phospholipase domain containing 5##BC104843|PNPLA5|150379|patatin-like phospholipase domain containing 5##BC143696|PNPLA5|150379|patatin-like phospholipase domain containing 5##BC031820|PNPLA5|150379|patatin-like phospholipase domain containing 5##AK056648|PNPLA5|150379|patatin-like phospholipase domain containing 5##AK127172|PNPLA5|150379|patatin-like phospholipase domain containing 5##NM_001177675|PNPLA5|150379|patatin-like phospholipase domain containing 5##NM_138814|PNPLA5|150379|patatin-like phospholipase domain containing 5##AK025665|PNPLA3|80339|patatin-like phospholipase domain containing 3##AL138578|PNPLA3|80339|patatin-like phospholipase domain containing 3##NM_025225|PNPLA3|80339|patatin-like phospholipase domain containing 3	0.863274	denovo_WM_21:32:0.863
chr16	31724476	31724595	reg1000875.p1	5.535	+	TSC_hg19_v1_chr16_+_31711931 BC021555 BC000552	-12595	+	TSC_hg19_v1_chr16_+_31711914 AK054698	-12619	+	NM_016633 AF147435 AF208865 AF364517 BC035842	-185319	+	TSC_hg19_v1_chr16_+_31724557 NM_001130913 BC055408	11	+	TSC_hg19_v1_chr16_+_31724564 AL832197	30	+	TSC_hg19_v1_chr16_+_31724584 AK299345 AK128671 BC018134 AX721120	66	+	BC021555|KIAA0664L3|100132341|KIAA0664-like 3##BC000552|KIAA0664L3|100132341|KIAA0664-like 3##AK054698|KIAA0664L3|100132341|KIAA0664-like 3##NM_016633|AHSP|51327|alpha hemoglobin stabilizing protein##AF147435|AHSP|51327|alpha hemoglobin stabilizing protein##AF208865|AHSP|51327|alpha hemoglobin stabilizing protein##AF364517|AHSP|51327|alpha hemoglobin stabilizing protein##BC035842|AHSP|51327|alpha hemoglobin stabilizing protein##NM_001130913|ZNF720|124411|zinc finger protein 720##BC055408|ZNF720|124411|zinc finger protein 720##AL832197|ZNF720|124411|zinc finger protein 720##AK128671|ZNF720|124411|zinc finger protein 720##BC018134|ZNF720|124411|zinc finger protein 720	0.084441	
chr3	33482402	33482556	reg1000351.p2	5.532	+	TSC_hg19_v1_chr3_-_33481898 AK293100 NM_001128161	-579	-	TSC_hg19_v1_chr3_-_33481868 BC047235 NM_001128160 NM_014517	-614	-	AK023274 AF198487 TSC_hg19_v1_chr3_-_33481564	-943	-	AB385365 AB014527 TSC_hg19_v1_chr3_-_33700598	218067	-	NM_001207044 AJ288058	218522	-	BC140778 TSC_hg19_v1_chr3_-_33759667	277125	-	AK293100|UBP1|7342|upstream binding protein 1 (LBP-1a)##NM_001128161|UBP1|7342|upstream binding protein 1 (LBP-1a)##BC047235|UBP1|7342|upstream binding protein 1 (LBP-1a)##NM_001128160|UBP1|7342|upstream binding protein 1 (LBP-1a)##NM_014517|UBP1|7342|upstream binding protein 1 (LBP-1a)##AK023274|UBP1|7342|upstream binding protein 1 (LBP-1a)##AF198487|UBP1|7342|upstream binding protein 1 (LBP-1a)##AB014527|CLASP2|23122|cytoplasmic linker associated protein 2##NM_001207044|CLASP2|23122|cytoplasmic linker associated protein 2##BC140778|CLASP2|23122|cytoplasmic linker associated protein 2	1.610888	denovo_WM_21:-5:0.831	denovo_WM_21:34:0.712
chr10	28592091	28592229	reg1000983.p1	5.519	+	TSC_hg19_v1_chr10_-_28591994 AK315046 AK301592	-228	-	BC038105 AK057360 NM_173496	-21120	-	AK292521 TSC_hg19_v1_chr10_-_28287879 AK001679 NM_018076 BC085611	-304276	-	BC043365 TSC_hg19_v1_chr10_-_28821677	229435	-	AK055852 TSC_hg19_v1_chr10_+_28821707 AK225846	229546	+	BC001026 TSC_hg19_v1_chr10_+_28821734	229569	+	AK315046|MPP7|143098|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)##AK301592|MPP7|143098|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)##BC038105|MPP7|143098|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)##AK057360|MPP7|143098|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)##NM_173496|MPP7|143098|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)##AK292521|ARMC4|55130|armadillo repeat containing 4##AK001679|ARMC4|55130|armadillo repeat containing 4##NM_018076|ARMC4|55130|armadillo repeat containing 4##BC085611|ARMC4|55130|armadillo repeat containing 4##BC043365|LOC220906|220906|uncharacterized LOC220906##AK055852|WAC|51322|WW domain containing adaptor with coiled-coil##AK225846|WAC|51322|WW domain containing adaptor with coiled-coil	1.489222	denovo_WM_21:13:0.685	denovo_WM_21:-20:0.758
chr14	82000250	82000415	reg1000876.p1	5.507	+	TSC_hg19_v1_chr14_-_82000198 NM_001244984 NM_005065	-105	-	TSC_hg19_v1_chr14_-_82000165 AB020335 AY358651 BC054336 AF052059 AK075511	-184	-	HQ258668 AF380833 BC117493 BC117495 BC069389 BC069359 BC069502 BC069587 AF449430 NM_033104	-135506	-	TSC_hg19_v1_chr14_+_85996487 AK056649 NM_013231	3996141	+	TSC_hg19_v1_chr14_+_85996515 BC126249 BC130290 BC143936	3996209	+	TSC_hg19_v1_chr14_+_85999692 AK297248	3999253	+	NM_001244984|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##NM_005065|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AB020335|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AY358651|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##BC054336|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AF052059|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AK075511|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##HQ258668|STON2|85439|stonin 2##AF380833|STON2|85439|stonin 2##BC117493|STON2|85439|stonin 2##BC117495|STON2|85439|stonin 2##BC069389|STON2|85439|stonin 2##BC069359|STON2|85439|stonin 2##BC069502|STON2|85439|stonin 2##BC069587|STON2|85439|stonin 2##AF449430|STON2|85439|stonin 2##NM_033104|STON2|85439|stonin 2##AK056649|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##NM_013231|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##BC126249|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##BC130290|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##BC143936|FLRT2|23768|fibronectin leucine rich transmembrane protein 2	0.629976	denovo_WM_21:-7:0.236	denovo_WM_21:-58:0.298
chr15	40697816	40697987	reg1001126.p2	5.504	+	NM_001159508 NM_002225	-216	+	TSC_hg19_v1_chr15_+_40675188 AK298156 BC004543 BC014060 BC021124 BC064344	-22701	+	AK125765 AK301887 NM_001142761 NM_001142762 NM_033286 BC118559 BC118639 AY652615 TSC_hg19_v1_chr15_+_40675159 BC045739 BC107802 U81002 AK027408	-22851	+	TSC_hg19_v1_chr15_+_40697995 AK122922	85	+	TSC_hg19_v1_chr15_+_40698004 M34192 BC017202	107	+	TSC_hg19_v1_chr15_+_40698024 AK315296 BT007145 DQ892577 DQ895793	147	+	NM_001159508|IVD|3712|isovaleryl-CoA dehydrogenase##NM_002225|IVD|3712|isovaleryl-CoA dehydrogenase##AK298156|C15orf23|90417|chromosome 15 open reading frame 23##BC004543|C15orf23|90417|chromosome 15 open reading frame 23##BC014060|C15orf23|90417|chromosome 15 open reading frame 23##BC021124|C15orf23|90417|chromosome 15 open reading frame 23##BC064344|C15orf23|90417|chromosome 15 open reading frame 23##AK125765|C15orf23|90417|chromosome 15 open reading frame 23##AK301887|C15orf23|90417|chromosome 15 open reading frame 23##NM_001142761|C15orf23|90417|chromosome 15 open reading frame 23##NM_001142762|C15orf23|90417|chromosome 15 open reading frame 23##NM_033286|C15orf23|90417|chromosome 15 open reading frame 23##BC118559|C15orf23|90417|chromosome 15 open reading frame 23##BC118639|C15orf23|90417|chromosome 15 open reading frame 23##AY652615|C15orf23|90417|chromosome 15 open reading frame 23##BC045739|C15orf23|90417|chromosome 15 open reading frame 23##BC107802|C15orf23|90417|chromosome 15 open reading frame 23##U81002|C15orf23|90417|chromosome 15 open reading frame 23##AK027408|C15orf23|90417|chromosome 15 open reading frame 23##AK122922|IVD|3712|isovaleryl-CoA dehydrogenase##M34192|IVD|3712|isovaleryl-CoA dehydrogenase##BC017202|IVD|3712|isovaleryl-CoA dehydrogenase##AK315296|IVD|3712|isovaleryl-CoA dehydrogenase##BT007145|IVD|3712|isovaleryl-CoA dehydrogenase##DQ892577|IVD|3712|isovaleryl-CoA dehydrogenase##DQ895793|IVD|3712|isovaleryl-CoA dehydrogenase	0.031857	
chrX	49126035	49126195	reg1000129.p2	5.503	+	AK292052 AK299988 TSC_hg19_v1_chrX_-_49121173 AF277993 NM_001114377 NM_014009	-4886	-	BC000972 AK316375 TSC_hg19_v1_chrX_+_49091994 AJ005890 DQ894170 EU176573 AB527482 BC011675	-34078	+	AK298264 TSC_hg19_v1_chrX_+_49091935 AK296911 AK291976	-34167	+	TSC_hg19_v1_chrX_+_49126305 AK303738 NM_001184745 NM_033215	188	+	TSC_hg19_v1_chrX_+_49126329 BC131588	214	+	AK056909 TSC_hg19_v1_chrX_+_49126512	383	+	AK292052|FOXP3|50943|forkhead box P3##AK299988|FOXP3|50943|forkhead box P3##AF277993|FOXP3|50943|forkhead box P3##NM_001114377|FOXP3|50943|forkhead box P3##NM_014009|FOXP3|50943|forkhead box P3##BC000972|CCDC22|28952|coiled-coil domain containing 22##AK316375|CCDC22|28952|coiled-coil domain containing 22##AJ005890|CCDC22|28952|coiled-coil domain containing 22##DQ894170|CCDC22|28952|coiled-coil domain containing 22##EU176573|CCDC22|28952|coiled-coil domain containing 22##BC011675|CCDC22|28952|coiled-coil domain containing 22##AK298264|CCDC22|28952|coiled-coil domain containing 22##AK296911|CCDC22|28952|coiled-coil domain containing 22##AK291976|CCDC22|28952|coiled-coil domain containing 22##AK303738|PPP1R3F|89801|protein phosphatase 1, regulatory subunit 3F##NM_001184745|PPP1R3F|89801|protein phosphatase 1, regulatory subunit 3F##NM_033215|PPP1R3F|89801|protein phosphatase 1, regulatory subunit 3F##BC131588|PPP1R3F|89801|protein phosphatase 1, regulatory subunit 3F##AK056909|PPP1R3F|89801|protein phosphatase 1, regulatory subunit 3F	1.501072	denovo_WM_21:6:0.781	denovo_WM_21:65:0.720
chr12	115100546	115100656	reg1001067.p1	5.500	+	AB051068 AF221714 NM_000192 NM_080717 Y09445	-254383	-	BC027942 NM_181486 TSC_hg19_v1_chr12_-_114843950	-256677	-	NM_080718 U80987 U89353 AB527531 EU446658	-258897	-	TSC_hg19_v1_chr12_-_115121970 AK054604 NM_005996 NM_016569	21539	-	TSC_hg19_v1_chr12_-_116714956 BC130422 AF515599 NM_015335	1614349	-	TSC_hg19_v1_chr12_-_116715263 AY338463	1614559	-	AB051068|TBX5|6910|T-box 5##AF221714|TBX5|6910|T-box 5##NM_000192|TBX5|6910|T-box 5##NM_080717|TBX5|6910|T-box 5##Y09445|TBX5|6910|T-box 5##BC027942|TBX5|6910|T-box 5##NM_181486|TBX5|6910|T-box 5##NM_080718|TBX5|6910|T-box 5##U80987|TBX5|6910|T-box 5##U89353|TBX5|6910|T-box 5##EU446658|TBX5|6910|T-box 5##AK054604|TBX3|6926|T-box 3##NM_005996|TBX3|6926|T-box 3##NM_016569|TBX3|6926|T-box 3##BC130422|MED13L|23389|mediator complex subunit 13-like##AF515599|MED13L|23389|mediator complex subunit 13-like##NM_015335|MED13L|23389|mediator complex subunit 13-like##AY338463|MED13L|23389|mediator complex subunit 13-like	0.0	
chr11	129872933	129873071	reg1000809.p2	5.499	+	TSC_hg19_v1_chr11_-_129872731 BC112934 AL833172 BX648944 NM_020228 NM_199437	-268	-	AK310354 TSC_hg19_v1_chr11_-_129872691	-313	-	AB033057 AB385439 BC117415 BC143612 BC143613 AF503171 AF275817 NM_199438 NM_199439	-55594	-	TSC_hg19_v1_chr11_+_129939755 NM_001142276 NM_001142277 NM_001142278 NM_001642	66712	+	TSC_hg19_v1_chr11_+_129939788 AK056883 AK225283 AK296765 AK300378 AK304736 AK308248	66787	+	TSC_hg19_v1_chr11_+_129939792 L09209 S60099 L19597 Z22572 L27631	66797	+	BC112934|PRDM10|56980|PR domain containing 10##AL833172|PRDM10|56980|PR domain containing 10##BX648944|PRDM10|56980|PR domain containing 10##NM_020228|PRDM10|56980|PR domain containing 10##NM_199437|PRDM10|56980|PR domain containing 10##AK310354|PRDM10|56980|PR domain containing 10##AB033057|PRDM10|56980|PR domain containing 10##BC117415|PRDM10|56980|PR domain containing 10##BC143612|PRDM10|56980|PR domain containing 10##BC143613|PRDM10|56980|PR domain containing 10##AF503171|PRDM10|56980|PR domain containing 10##AF275817|PRDM10|56980|PR domain containing 10##NM_199438|PRDM10|56980|PR domain containing 10##NM_199439|PRDM10|56980|PR domain containing 10##NM_001142276|APLP2|334|amyloid beta (A4) precursor-like protein 2##NM_001142277|APLP2|334|amyloid beta (A4) precursor-like protein 2##NM_001142278|APLP2|334|amyloid beta (A4) precursor-like protein 2##NM_001642|APLP2|334|amyloid beta (A4) precursor-like protein 2##AK056883|APLP2|334|amyloid beta (A4) precursor-like protein 2##AK225283|APLP2|334|amyloid beta (A4) precursor-like protein 2##AK296765|APLP2|334|amyloid beta (A4) precursor-like protein 2##AK300378|APLP2|334|amyloid beta (A4) precursor-like protein 2##AK304736|APLP2|334|amyloid beta (A4) precursor-like protein 2##AK308248|APLP2|334|amyloid beta (A4) precursor-like protein 2##L09209|APLP2|334|amyloid beta (A4) precursor-like protein 2##S60099|APLP2|334|amyloid beta (A4) precursor-like protein 2##L19597|APLP2|334|amyloid beta (A4) precursor-like protein 2##Z22572|APLP2|334|amyloid beta (A4) precursor-like protein 2##L27631|APLP2|334|amyloid beta (A4) precursor-like protein 2	1.085717	denovo_WM_21:47:0.993
chr7	129074137	129074260	reg1000816.p2	5.499	+	AK316073 NM_001130722	-58715	+	TSC_hg19_v1_chr7_+_129008062 AK025372	-66110	+	TSC_hg19_v1_chr7_+_129007981 NM_001130723	-66212	+	TSC_hg19_v1_chr7_+_129074283 NM_001134336 NM_020704 AK290165 BC019064 AB032996 CU676366 AB463039 AM392619 AM392944 AM392960 AM393447	75	+	BC050400 NM_001195243 BC035417	68166	+	TSC_hg19_v1_chr7_-_129251474 AK123679	177280	-	AK316073|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_001130722|AHCYL2|23382|adenosylhomocysteinase-like 2##AK025372|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_001130723|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_001134336|FAM40B|57464|family with sequence similarity 40, member B##NM_020704|FAM40B|57464|family with sequence similarity 40, member B##AK290165|FAM40B|57464|family with sequence similarity 40, member B##BC019064|FAM40B|57464|family with sequence similarity 40, member B##AB032996|FAM40B|57464|family with sequence similarity 40, member B##AM392619|FAM40B|57464|family with sequence similarity 40, member B##AM392944|FAM40B|57464|family with sequence similarity 40, member B##AM392960|FAM40B|57464|family with sequence similarity 40, member B##AM393447|FAM40B|57464|family with sequence similarity 40, member B##BC050400|LOC100287482|100287482|uncharacterized LOC100287482##NM_001195243|LOC100287482|100287482|uncharacterized LOC100287482##BC035417|LOC100287482|100287482|uncharacterized LOC100287482	0.408458	denovo_WM_21:17:0.303
chr17	40540530	40540677	reg1000430.p1	5.488	+	TSC_hg19_v1_chr17_-_40540580 AK291933	-11	-	TSC_hg19_v1_chr17_-_40540493 L29277 NM_003150 NM_139276 AK301200 AK316139	-71	-	TSC_hg19_v1_chr17_-_40540461 BC014482 NM_213662 BC000627 BC029783 AK297994	-189	-	AB464659 TSC_hg19_v1_chr17_-_40575275 BC008849 AK298072 AK074512 AK092406 AK298563 AK314389 AX747528 BC066123 NM_012232	34624	-	TSC_hg19_v1_chr17_+_40610864 L78933 NM_001130020 NM_001130021 NM_005177 Z71460	70260	+	BC017826 TSC_hg19_v1_chr17_+_40610895 AK223554 AK299784	70282	+	AK291933|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##L29277|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##NM_003150|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##NM_139276|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##AK301200|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##AK316139|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##BC014482|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##NM_213662|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##BC000627|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##BC029783|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##AK297994|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##BC008849|PTRF|284119|polymerase I and transcript release factor##AK298072|PTRF|284119|polymerase I and transcript release factor##AK074512|PTRF|284119|polymerase I and transcript release factor##AK092406|PTRF|284119|polymerase I and transcript release factor##AK298563|PTRF|284119|polymerase I and transcript release factor##AK314389|PTRF|284119|polymerase I and transcript release factor##BC066123|PTRF|284119|polymerase I and transcript release factor##NM_012232|PTRF|284119|polymerase I and transcript release factor##L78933|ATP6V0A1|535|ATPase, H+ transporting, lysosomal V0 subunit a1##NM_001130020|ATP6V0A1|535|ATPase, H+ transporting, lysosomal V0 subunit a1##NM_001130021|ATP6V0A1|535|ATPase, H+ transporting, lysosomal V0 subunit a1##NM_005177|ATP6V0A1|535|ATPase, H+ transporting, lysosomal V0 subunit a1##Z71460|ATP6V0A1|535|ATPase, H+ transporting, lysosomal V0 subunit a1##BC017826|ATP6V0A1|535|ATPase, H+ transporting, lysosomal V0 subunit a1##AK223554|ATP6V0A1|535|ATPase, H+ transporting, lysosomal V0 subunit a1##AK299784|ATP6V0A1|535|ATPase, H+ transporting, lysosomal V0 subunit a1	0.789839	denovo_WM_21:60:0.728
chr14	71276424	71276608	reg1001031.p1	5.485	+	AF251442 TSC_hg19_v1_chr14_-_71275778 BC111407 AY327900 BC133706 NM_033141	-707	-	TSC_hg19_v1_chr14_+_71108629 D86980 NM_015351 BC047950 AB464295	-167907	+	AK223346 AK290647 AK300417 AK300460 AK304361 TSC_hg19_v1_chr14_-_71067373 AF074723 BC004106 AK222587 NM_005466	-209139	-	TSC_hg19_v1_chr14_+_71374143 AB023212 AF233450 BC152474 BC167161 NM_014982	97617	+	TSC_hg19_v1_chr14_+_71374441 BC140784	97935	+	AF090989 AF090990 NM_015556	719525	+	AF251442|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC111407|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AY327900|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC133706|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##NM_033141|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##D86980|TTC9|23508|tetratricopeptide repeat domain 9##NM_015351|TTC9|23508|tetratricopeptide repeat domain 9##BC047950|TTC9|23508|tetratricopeptide repeat domain 9##AK223346|MED6|10001|mediator complex subunit 6##AK290647|MED6|10001|mediator complex subunit 6##AK300417|MED6|10001|mediator complex subunit 6##AK300460|MED6|10001|mediator complex subunit 6##AK304361|MED6|10001|mediator complex subunit 6##AF074723|MED6|10001|mediator complex subunit 6##BC004106|MED6|10001|mediator complex subunit 6##AK222587|MED6|10001|mediator complex subunit 6##NM_005466|MED6|10001|mediator complex subunit 6##AB023212|PCNX|22990|pecanex homolog (Drosophila)##AF233450|PCNX|22990|pecanex homolog (Drosophila)##BC152474|PCNX|22990|pecanex homolog (Drosophila)##BC167161|PCNX|22990|pecanex homolog (Drosophila)##NM_014982|PCNX|22990|pecanex homolog (Drosophila)##BC140784|PCNX|22990|pecanex homolog (Drosophila)##AF090989|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##AF090990|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##NM_015556|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1	0.423052	denovo_WM_21:34:0.423
chr14	102991087	102991208	reg1001057.p2	5.484	+	TSC_hg19_v1_chr14_-_102976110 BX161460 NM_152326	-15033	-	AK291868 TSC_hg19_v1_chr14_-_102976070	-15114	-	TSC_hg19_v1_chr14_+_102829428 BC030791 AK296395 AK299690 BC142667 BC142715 AK127721	-161722	+	TSC_hg19_v1_chr14_+_103058991 NM_015156 BC051003 BC064495	67851	+	TSC_hg19_v1_chr14_+_103059100 AB464145 AF155595	68014	+	TSC_hg19_v1_chr14_+_103243821 NM_001199427 NM_003300 NM_145725 NM_145726 U21092	252672	+	BX161460|ANKRD9|122416|ankyrin repeat domain 9##NM_152326|ANKRD9|122416|ankyrin repeat domain 9##AK291868|ANKRD9|122416|ankyrin repeat domain 9##BC030791|TECPR2|9895|tectonin beta-propeller repeat containing 2##AK296395|TECPR2|9895|tectonin beta-propeller repeat containing 2##AK299690|TECPR2|9895|tectonin beta-propeller repeat containing 2##BC142667|TECPR2|9895|tectonin beta-propeller repeat containing 2##BC142715|TECPR2|9895|tectonin beta-propeller repeat containing 2##AK127721|TECPR2|9895|tectonin beta-propeller repeat containing 2##NM_015156|RCOR1|23186|REST corepressor 1##BC051003|RCOR1|23186|REST corepressor 1##BC064495|RCOR1|23186|REST corepressor 1##AF155595|RCOR1|23186|REST corepressor 1##NM_001199427|TRAF3|7187|TNF receptor-associated factor 3##NM_003300|TRAF3|7187|TNF receptor-associated factor 3##NM_145725|TRAF3|7187|TNF receptor-associated factor 3##NM_145726|TRAF3|7187|TNF receptor-associated factor 3##U21092|TRAF3|7187|TNF receptor-associated factor 3	1.669626	denovo_WM_21:-34:0.802	denovo_WM_21:55:0.868
chr1	247171407	247171478	reg1000754.p2	5.480	+	BC055096 TSC_hg19_v1_chr1_-_247171375 NM_001204221 NM_020394	-68	-	TSC_hg19_v1_chr1_-_247171329 BC041082 AX721130	-111	-	BC023527 AF242519 TSC_hg19_v1_chr1_-_247171319	-130	-	TSC_hg19_v1_chr1_-_247242065 AK074774 BC005360	70606	-	TSC_hg19_v1_chr1_-_247242116 AK126366 NM_001204220 NM_033213	70671	-	TSC_hg19_v1_chr1_-_247267631 AK022668 AX721155 AK056020 AX721139 BC015312 NM_001142572 NM_024804	96219	-	BC055096|ZNF695|57116|zinc finger protein 695##NM_001204221|ZNF695|57116|zinc finger protein 695##NM_020394|ZNF695|57116|zinc finger protein 695##BC041082|ZNF695|57116|zinc finger protein 695##BC023527|ZNF695|57116|zinc finger protein 695##AK074774|ZNF670|93474|zinc finger protein 670##BC005360|ZNF670|93474|zinc finger protein 670##AK126366|ZNF670-ZNF695|100533111|ZNF670-ZNF695 readthrough##NM_001204220|ZNF670|93474|zinc finger protein 670##NM_033213|ZNF670|93474|zinc finger protein 670##AK022668|ZNF669|79862|zinc finger protein 669##AK056020|ZNF669|79862|zinc finger protein 669##BC015312|ZNF669|79862|zinc finger protein 669##NM_001142572|ZNF669|79862|zinc finger protein 669##NM_024804|ZNF669|79862|zinc finger protein 669	0.026573	
chr16	30645695	30645825	reg1000942.p1	5.479	+	AK310459 AB065282 BC014000 NM_138447 TSC_hg19_v1_chr16_-_30621684	-24104	-	TSC_hg19_v1_chr16_-_30597103 AK309511 EU446576 AK292465 BC040642 AK298848 AK056692 NM_152458	-48785	-	NM_001024683 NM_145271	-62033	-	TSC_hg19_v1_chr16_+_30662098 CR936781 AK125716	16340	+	TSC_hg19_v1_chr16_+_30662286 BC010232 BC050677 NM_024031 BC011573 BC000119 AK074783	16505	+	NM_001105079	30017	+	AK310459|ZNF689|115509|zinc finger protein 689##AB065282|ZNF689|115509|zinc finger protein 689##BC014000|ZNF689|115509|zinc finger protein 689##NM_138447|ZNF689|115509|zinc finger protein 689##AK309511|ZNF785|146540|zinc finger protein 785##EU446576|ZNF785|146540|zinc finger protein 785##AK292465|ZNF785|146540|zinc finger protein 785##BC040642|ZNF785|146540|zinc finger protein 785##AK298848|ZNF785|146540|zinc finger protein 785##AK056692|ZNF785|146540|zinc finger protein 785##NM_152458|ZNF785|146540|zinc finger protein 785##NM_001024683|ZNF688|146542|zinc finger protein 688##NM_145271|ZNF688|146542|zinc finger protein 688##CR936781|PRR14|78994|proline rich 14##AK125716|PRR14|78994|proline rich 14##BC010232|PRR14|78994|proline rich 14##BC050677|PRR14|78994|proline rich 14##NM_024031|PRR14|78994|proline rich 14##BC011573|PRR14|78994|proline rich 14##BC000119|PRR14|78994|proline rich 14##AK074783|PRR14|78994|proline rich 14##NM_001105079|FBRS|64319|fibrosin	0.0	
chr9	36190800	36190939	reg1001046.p1	5.473	+	NM_001076677 NM_001184760 NM_001184761 NM_001184762 NM_001833 NM_007096 TSC_hg19_v1_chr9_+_36190877	-2	+	AK313763 NM_005893 AF333334 BC019251 DQ890826 DQ893980 DQ893982 EU176505 Z46967	-21423	+	TSC_hg19_v1_chr9_+_36136731 AK074488 BC017918 AK075091 AK298741 AK307243 CR749781 AY039756 NM_022343	-54137	+	TSC_hg19_v1_chr9_+_36190919 AK291078	36	+	AK295692 TSC_hg19_v1_chr9_+_36190928 BC009201	62	+	TSC_hg19_v1_chr9_+_36190960 AK225153 BC019287 M20472 M20471	103	+	NM_001076677|CLTA|1211|clathrin, light chain A##NM_001184760|CLTA|1211|clathrin, light chain A##NM_001184761|CLTA|1211|clathrin, light chain A##NM_001184762|CLTA|1211|clathrin, light chain A##NM_001833|CLTA|1211|clathrin, light chain A##NM_007096|CLTA|1211|clathrin, light chain A##AK313763|CCIN|881|calicin##NM_005893|CCIN|881|calicin##AF333334|CCIN|881|calicin##BC019251|CCIN|881|calicin##DQ890826|CCIN|881|calicin##DQ893980|CCIN|881|calicin##DQ893982|CCIN|881|calicin##EU176505|CCIN|881|calicin##Z46967|CCIN|881|calicin##AK074488|GLIPR2|152007|GLI pathogenesis-related 2##BC017918|GLIPR2|152007|GLI pathogenesis-related 2##AK075091|GLIPR2|152007|GLI pathogenesis-related 2##AK298741|GLIPR2|152007|GLI pathogenesis-related 2##AK307243|GLIPR2|152007|GLI pathogenesis-related 2##CR749781|GLIPR2|152007|GLI pathogenesis-related 2##AY039756|GLIPR2|152007|GLI pathogenesis-related 2##NM_022343|GLIPR2|152007|GLI pathogenesis-related 2##AK291078|CLTA|1211|clathrin, light chain A##AK295692|CLTA|1211|clathrin, light chain A##BC009201|CLTA|1211|clathrin, light chain A##AK225153|CLTA|1211|clathrin, light chain A##BC019287|CLTA|1211|clathrin, light chain A##M20472|CLTA|1211|clathrin, light chain A##M20471|CLTA|1211|clathrin, light chain A	1.074276	denovo_WM_21:-14:0.990
chr1	26560507	26560646	reg1000773.p1	5.469	+	BC144663 BC128138 BC128139 NM_198137	-43492	+	TSC_hg19_v1_chr1_+_26504028 AB590388 DQ892241 DQ895441 CU679980 BT006900	-56545	+	TSC_hg19_v1_chr1_+_26503979 AK296814 NM_006314 AB209335 AK222904 BC011604 BC012797 AF100153 AK001900 AK222817 AK292646 AK302056	-56580	+	TSC_hg19_v1_chr1_+_26560690 AK024038 AK299312 BC064528 NM_022778	79	+	NM_031286	45636	+	BC030135 TSC_hg19_v1_chr1_+_26606522	45908	+	BC144663|CATSPER4|378807|cation channel, sperm associated 4##BC128138|CATSPER4|378807|cation channel, sperm associated 4##BC128139|CATSPER4|378807|cation channel, sperm associated 4##NM_198137|CATSPER4|378807|cation channel, sperm associated 4##DQ892241|CNKSR1|10256|connector enhancer of kinase suppressor of Ras 1##DQ895441|CNKSR1|10256|connector enhancer of kinase suppressor of Ras 1##BT006900|CNKSR1|10256|connector enhancer of kinase suppressor of Ras 1##AK296814|CNKSR1|10256|connector enhancer of kinase suppressor of Ras 1##NM_006314|CNKSR1|10256|connector enhancer of kinase suppressor of Ras 1##AB209335|CNKSR1|10256|connector enhancer of kinase suppressor of Ras 1##AK222904|CNKSR1|10256|connector enhancer of kinase suppressor of Ras 1##BC011604|CNKSR1|10256|connector enhancer of kinase suppressor of Ras 1##BC012797|CNKSR1|10256|connector enhancer of kinase suppressor of Ras 1##AF100153|CNKSR1|10256|connector enhancer of kinase suppressor of Ras 1##AK001900|CNKSR1|10256|connector enhancer of kinase suppressor of Ras 1##AK222817|CNKSR1|10256|connector enhancer of kinase suppressor of Ras 1##AK292646|CNKSR1|10256|connector enhancer of kinase suppressor of Ras 1##AK302056|CNKSR1|10256|connector enhancer of kinase suppressor of Ras 1##AK024038|CEP85|64793|centrosomal protein 85kDa##AK299312|CEP85|64793|centrosomal protein 85kDa##BC064528|CEP85|64793|centrosomal protein 85kDa##NM_022778|CEP85|64793|centrosomal protein 85kDa##NM_031286|SH3BGRL3|83442|SH3 domain binding glutamic acid-rich protein like 3##BC030135|SH3BGRL3|83442|SH3 domain binding glutamic acid-rich protein like 3	1.539307	denovo_WM_21:-6:0.762	denovo_WM_21:46:0.778
chr17	44657056	44657176	reg1000943.p1	5.464	+	BC020869 AB209344 AF208864 BX647266 NM_001113738 NM_016632	-69	-	BC040501 CR749232 NM_001006607	-67041	+	BC020869 AK289590 AK315857 BC041803 BC030570 BX647266 NM_001039083 NM_001103154 NM_001113738 NM_016632	-217994	-	NM_006178 AF135168 AF102846 AK294001 AK294727 AK294886 AK299786 BC030613 AK226078 AK290204 AK316057 U03985	10961	+	AB464356 AB067628 BC114219 BC112116 BC112118 AY009397 NM_030753	238905	-	AY358217 AK127615 AB063483 NM_003396 BC064534 AB590853	271858	+	BC020869|ARL17A|51326|ADP-ribosylation factor-like 17A##AB209344|ARL17A|51326|ADP-ribosylation factor-like 17A##AF208864|ARL17A|51326|ADP-ribosylation factor-like 17A##BX647266|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_001113738|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_016632|ARL17A|51326|ADP-ribosylation factor-like 17A##BC040501|LRRC37A|9884|leucine rich repeat containing 37A##CR749232|LRRC37A|9884|leucine rich repeat containing 37A##NM_001006607|LRRC37A2|474170|leucine rich repeat containing 37, member A2##BC020869|ARL17A|51326|ADP-ribosylation factor-like 17A##AK289590|ARL17A|51326|ADP-ribosylation factor-like 17A##AK315857|ARL17A|51326|ADP-ribosylation factor-like 17A##BC041803|ARL17A|51326|ADP-ribosylation factor-like 17A##BC030570|ARL17A|51326|ADP-ribosylation factor-like 17A##BX647266|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_001039083|ARL17B|100506084|ADP-ribosylation factor-like 17B##NM_001103154|ARL17B|100506084|ADP-ribosylation factor-like 17B##NM_001113738|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_016632|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_006178|NSF|4905|N-ethylmaleimide-sensitive factor##AF135168|NSF|4905|N-ethylmaleimide-sensitive factor##AF102846|NSF|4905|N-ethylmaleimide-sensitive factor##AK294001|NSF|4905|N-ethylmaleimide-sensitive factor##AK294727|NSF|4905|N-ethylmaleimide-sensitive factor##AK294886|NSF|4905|N-ethylmaleimide-sensitive factor##AK299786|NSF|4905|N-ethylmaleimide-sensitive factor##BC030613|NSF|4905|N-ethylmaleimide-sensitive factor##AK226078|NSF|4905|N-ethylmaleimide-sensitive factor##AK290204|NSF|4905|N-ethylmaleimide-sensitive factor##AK316057|NSF|4905|N-ethylmaleimide-sensitive factor##U03985|NSF|4905|N-ethylmaleimide-sensitive factor##AB067628|WNT3|7473|wingless-type MMTV integration site family, member 3##BC114219|WNT3|7473|wingless-type MMTV integration site family, member 3##BC112116|WNT3|7473|wingless-type MMTV integration site family, member 3##BC112118|WNT3|7473|wingless-type MMTV integration site family, member 3##AY009397|WNT3|7473|wingless-type MMTV integration site family, member 3##NM_030753|WNT3|7473|wingless-type MMTV integration site family, member 3##AY358217|WNT9B|7484|wingless-type MMTV integration site family, member 9B##AK127615|WNT9B|7484|wingless-type MMTV integration site family, member 9B##AB063483|WNT9B|7484|wingless-type MMTV integration site family, member 9B##NM_003396|WNT9B|7484|wingless-type MMTV integration site family, member 9B##BC064534|WNT9B|7484|wingless-type MMTV integration site family, member 9B	0.015355	
chr1	968483	968617	reg1001034.p1	5.464	+	AF016903 U84406 TSC_hg19_v1_chr1_+_955679	-12905	+	TSC_hg19_v1_chr1_+_955536 AB385240	-13007	+	TSC_hg19_v1_chr1_+_955499 AB191264 NM_198576	-13054	+	TSC_hg19_v1_chr1_+_978666 BC084578	10172	+	TSC_hg19_v1_chr1_+_995079 AK310350	26536	+	TSC_hg19_v1_chr1_+_995109 BC033949	26562	+	AF016903|AGRN|375790|agrin##U84406|AGRN|375790|agrin##AB191264|AGRN|375790|agrin##NM_198576|AGRN|375790|agrin##BC084578|AGRN|375790|agrin##AK310350|LOC100288175|100288175|uncharacterized LOC100288175##BC033949|LOC100288175|100288175|uncharacterized LOC100288175	0.0	
chr2	232571751	232571907	reg1001035.p1	5.464	+	BC024251 NM_152614 BC034405 BC063389 DQ891288 DQ894472	-114212	+	AF272362 BC051914 AK300222 AK301102 NM_006056 BC036543	-176675	-	BC033054 TSC_hg19_v1_chr2_-_232379076	-192747	-	TSC_hg19_v1_chr2_+_232573239 NM_001099285 NM_002823 BC022433 AK223605 AK314106 M14630 BC034921	1405	+	BC001624 BC098420 BC070480 BC003510 BC051265 BC071879 BC071647 TSC_hg19_v1_chr2_+_232573265 M26708 M14483 BC066905 M14794 DQ892963 DQ896210 AF170294 AF348514 AY169282	1503	+	BT007278 CR456980 AB464015 DQ893223 DQ896553 AJ001626 TSC_hg19_v1_chr2_-_232645990 BC007831 AF022912 NM_002601 BC001054 AK311623	74096	-	NM_152614|C2orf57|165100|chromosome 2 open reading frame 57##BC034405|C2orf57|165100|chromosome 2 open reading frame 57##BC063389|C2orf57|165100|chromosome 2 open reading frame 57##DQ891288|C2orf57|165100|chromosome 2 open reading frame 57##DQ894472|C2orf57|165100|chromosome 2 open reading frame 57##AF272362|NMUR1|10316|neuromedin U receptor 1##BC051914|NMUR1|10316|neuromedin U receptor 1##AK300222|NMUR1|10316|neuromedin U receptor 1##NM_006056|NMUR1|10316|neuromedin U receptor 1##BC036543|NMUR1|10316|neuromedin U receptor 1##BC033054|LINC00471|151477|long intergenic non-protein coding RNA 471##NM_001099285|PTMA|5757|prothymosin, alpha##NM_002823|PTMA|5757|prothymosin, alpha##BC022433|PTMA|5757|prothymosin, alpha##AK223605|PTMA|5757|prothymosin, alpha##AK314106|PTMA|5757|prothymosin, alpha##M14630|PTMA|5757|prothymosin, alpha##BC034921|PTMA|5757|prothymosin, alpha##BC098420|PTMA|5757|prothymosin, alpha##BC070480|PTMA|5757|prothymosin, alpha##BC003510|PTMA|5757|prothymosin, alpha##BC051265|PTMA|5757|prothymosin, alpha##BC071879|PTMA|5757|prothymosin, alpha##BC071647|PTMA|5757|prothymosin, alpha##M26708|PTMA|5757|prothymosin, alpha##M14483|PTMA|5757|prothymosin, alpha##BC066905|PTMA|5757|prothymosin, alpha##M14794|PTMA|5757|prothymosin, alpha##DQ892963|PTMA|5757|prothymosin, alpha##DQ896210|PTMA|5757|prothymosin, alpha##AF348514|PTMA|5757|prothymosin, alpha##AY169282|PTMA|5757|prothymosin, alpha##BT007278|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##CR456980|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##DQ893223|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##DQ896553|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##AJ001626|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##BC007831|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##AF022912|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##NM_002601|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##BC001054|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta	0.038369	
chr2	70418138	70418234	reg1000917.p1	5.458	+	TSC_hg19_v1_chr2_-_70418137 BC002825 BC005079 AK000565 NM_017880	-65	-	TSC_hg19_v1_chr2_+_70314983 BC013020	-103188	+	AK130439 TSC_hg19_v1_chr2_+_70314932	-103269	+	CU677529 AB528896 BC015944 M77142 TSC_hg19_v1_chr2_-_70475711 NM_022037 NM_022173 AK303345	57533	-	TSC_hg19_v1_chr2_+_70485278 NM_016297 AF181490 BC051891 AY359063 BC033815 AK314453 AK225302 AK303043 BC022259 AB020715 DQ890801 DQ893956 CU689758	67064	+	CR456918 AB464221 BC071880 TSC_hg19_v1_chr2_-_70520827 BC070166 BC066302 BC000070	102625	-	BC002825|C2orf42|54980|chromosome 2 open reading frame 42##BC005079|C2orf42|54980|chromosome 2 open reading frame 42##AK000565|C2orf42|54980|chromosome 2 open reading frame 42##NM_017880|C2orf42|54980|chromosome 2 open reading frame 42##AK130439|PCBP1|5093|poly(rC) binding protein 1##BC015944|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##M77142|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022037|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022173|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##AK303345|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_016297|PCYOX1|51449|prenylcysteine oxidase 1##AF181490|PCYOX1|51449|prenylcysteine oxidase 1##BC051891|PCYOX1|51449|prenylcysteine oxidase 1##AY359063|PCYOX1|51449|prenylcysteine oxidase 1##BC033815|PCYOX1|51449|prenylcysteine oxidase 1##AK314453|PCYOX1|51449|prenylcysteine oxidase 1##AK225302|PCYOX1|51449|prenylcysteine oxidase 1##AK303043|PCYOX1|51449|prenylcysteine oxidase 1##BC022259|PCYOX1|51449|prenylcysteine oxidase 1##AB020715|PCYOX1|51449|prenylcysteine oxidase 1##DQ890801|PCYOX1|51449|prenylcysteine oxidase 1##DQ893956|PCYOX1|51449|prenylcysteine oxidase 1##CR456918|SNRPG|6637|small nuclear ribonucleoprotein polypeptide G##BC071880|SNRPG|6637|small nuclear ribonucleoprotein polypeptide G##BC070166|SNRPG|6637|small nuclear ribonucleoprotein polypeptide G##BC066302|SNRPG|6637|small nuclear ribonucleoprotein polypeptide G##BC000070|SNRPG|6637|small nuclear ribonucleoprotein polypeptide G	0.236389	denovo_WM_21:-10:0.236
chr19	15947922	15948043	reg1001138.p1	5.456	+	HQ258605 BC130360 BC132969 NM_013940	-29091	-	BC136869 AB529278 NM_001004466	-43173	+	AB529277 BC106707 BC113844 NM_013938	-95781	+	BC067437 BC067438 BC067439 BC067440 D26480 AK313705 U02388 AK300961 TSC_hg19_v1_chr19_-_16008885 AK290790 AK296200 NM_001082	60895	-	TSC_hg19_v1_chr19_-_16045678 BC016853 NM_001128932 NM_021187	97691	-	NM_001004465	111835	+	HQ258605|OR10H1|26539|olfactory receptor, family 10, subfamily H, member 1##BC130360|OR10H1|26539|olfactory receptor, family 10, subfamily H, member 1##BC132969|OR10H1|26539|olfactory receptor, family 10, subfamily H, member 1##NM_013940|OR10H1|26539|olfactory receptor, family 10, subfamily H, member 1##BC136869|OR10H5|284433|olfactory receptor, family 10, subfamily H, member 5##NM_001004466|OR10H5|284433|olfactory receptor, family 10, subfamily H, member 5##BC106707|OR10H3|26532|olfactory receptor, family 10, subfamily H, member 3##BC113844|OR10H3|26532|olfactory receptor, family 10, subfamily H, member 3##NM_013938|OR10H3|26532|olfactory receptor, family 10, subfamily H, member 3##BC067437|CYP4F2|8529|cytochrome P450, family 4, subfamily F, polypeptide 2##BC067438|CYP4F2|8529|cytochrome P450, family 4, subfamily F, polypeptide 2##BC067439|CYP4F2|8529|cytochrome P450, family 4, subfamily F, polypeptide 2##BC067440|CYP4F2|8529|cytochrome P450, family 4, subfamily F, polypeptide 2##D26480|CYP4F2|8529|cytochrome P450, family 4, subfamily F, polypeptide 2##AK313705|CYP4F2|8529|cytochrome P450, family 4, subfamily F, polypeptide 2##U02388|CYP4F2|8529|cytochrome P450, family 4, subfamily F, polypeptide 2##AK300961|CYP4F2|8529|cytochrome P450, family 4, subfamily F, polypeptide 2##AK290790|CYP4F2|8529|cytochrome P450, family 4, subfamily F, polypeptide 2##AK296200|CYP4F2|8529|cytochrome P450, family 4, subfamily F, polypeptide 2##NM_001082|CYP4F2|8529|cytochrome P450, family 4, subfamily F, polypeptide 2##BC016853|CYP4F11|57834|cytochrome P450, family 4, subfamily F, polypeptide 11##NM_001128932|CYP4F11|57834|cytochrome P450, family 4, subfamily F, polypeptide 11##NM_021187|CYP4F11|57834|cytochrome P450, family 4, subfamily F, polypeptide 11##NM_001004465|OR10H4|126541|olfactory receptor, family 10, subfamily H, member 4	1.674325	denovo_WM_21:-15:0.848	denovo_WM_21:-48:0.826
chr3	20227692	20227809	reg1001071.p1	5.444	+	AB193056 AB193057 AB193058 AB193059 AB193060 AB193061 AB193062 AB193063 AB193064 AB193065 AB193066 TSC_hg19_v1_chr3_-_20227699 AB187577 AB187578 AB187579 AB187580 AB187581 AB187582 AB567656 AB567657 BC017867 BX648516 NM_001012409 NM_001012410 NM_001012411 NM_001012412 NM_001012413 NM_138484 AK308095 NM_001199251 NM_001199252 NM_001199253 NM_001199254 NM_001199255 NM_001199256 NM_001199257	-76	-	BC070075 TSC_hg19_v1_chr3_+_20081907 BC060823 AB527402	-145840	+	NM_003884 U57317	-146227	+	AK026072 NM_024697	1565065	-	AK310298 TSC_hg19_v1_chr3_-_22414124	2186384	-	TSC_hg19_v1_chr3_+_23244600 AK307075	3016833	+	AB193056|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193057|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193058|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193059|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193060|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193061|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193062|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193063|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193064|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193065|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193066|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187577|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187578|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187579|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187580|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187581|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187582|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB567656|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB567657|SGOL1|151648|shugoshin-like 1 (S. pombe)##BC017867|SGOL1|151648|shugoshin-like 1 (S. pombe)##BX648516|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012409|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012410|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012411|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012412|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012413|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_138484|SGOL1|151648|shugoshin-like 1 (S. pombe)##AK308095|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199251|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199252|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199253|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199254|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199255|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199256|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199257|SGOL1|151648|shugoshin-like 1 (S. pombe)##BC070075|KAT2B|8850|K(lysine) acetyltransferase 2B##BC060823|KAT2B|8850|K(lysine) acetyltransferase 2B##NM_003884|KAT2B|8850|K(lysine) acetyltransferase 2B##U57317|KAT2B|8850|K(lysine) acetyltransferase 2B##AK026072|ZNF385D|79750|zinc finger protein 385D##NM_024697|ZNF385D|79750|zinc finger protein 385D##AK310298|ZNF385D|79750|zinc finger protein 385D##AK307075|UBE2E2|7325|ubiquitin-conjugating enzyme E2E 2	0.313938	denovo_WM_21:-27:0.314
chr1	244211589	244211719	reg1001105.p2	5.429	+	AL117525 NM_001206729	-204769	-	AF135794 AB463341 AM392791 AM392849 AJ245709 AF124141 AK308052 BC020479 AF085234 AY005799 BC121154 NM_005465 NM_181690	-205127	-	TSC_hg19_v1_chr1_+_243419405 AK297105 AF250731	-792219	+	TSC_hg19_v1_chr1_+_244214553 NM_205768	2902	+	TSC_hg19_v1_chr1_+_244214584 AK291408 AK293892 BC036677	2929	+	BC078175 AJ001388 NM_006352	4889	+	AL117525|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##NM_001206729|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AF135794|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AM392791|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AM392849|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AJ245709|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AF124141|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AK308052|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##BC020479|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AF085234|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AY005799|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##BC121154|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##NM_005465|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##NM_181690|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AK297105|SDCCAG8|10806|serologically defined colon cancer antigen 8##AF250731|SDCCAG8|10806|serologically defined colon cancer antigen 8##NM_205768|ZNF238|10472|zinc finger protein 238##AK291408|ZNF238|10472|zinc finger protein 238##AK293892|ZNF238|10472|zinc finger protein 238##BC036677|ZNF238|10472|zinc finger protein 238##BC078175|ZNF238|10472|zinc finger protein 238##AJ001388|ZNF238|10472|zinc finger protein 238##NM_006352|ZNF238|10472|zinc finger protein 238	0.960024	denovo_WM_21:3:0.807
chr20	62496416	62496541	reg1000868.p1	5.429	+	NM_080622	-3913	+	TSC_hg19_v1_chr20_-_62462618 BC052269 BC073800	-33881	-	AK131482 NM_025224	-59623	-	NM_001243891 NM_001243892 NM_001243894 NM_001243895 NM_003288 NM_199359 NM_199360 NM_199361 NM_199362 NM_199363 TSC_hg19_v1_chr20_+_62496622 AK298366 AK055068 AK297064 AK314501	125	+	TSC_hg19_v1_chr20_+_62496638 AF004430	162	+	TSC_hg19_v1_chr20_+_62496650 AK223031	183	+	NM_080622|ABHD16B|140701|abhydrolase domain containing 16B##BC052269|ZBTB46|140685|zinc finger and BTB domain containing 46##BC073800|ZBTB46|140685|zinc finger and BTB domain containing 46##AK131482|ZBTB46|140685|zinc finger and BTB domain containing 46##NM_025224|ZBTB46|140685|zinc finger and BTB domain containing 46##NM_001243891|TPD52L2|7165|tumor protein D52-like 2##NM_001243892|TPD52L2|7165|tumor protein D52-like 2##NM_001243894|TPD52L2|7165|tumor protein D52-like 2##NM_001243895|TPD52L2|7165|tumor protein D52-like 2##NM_003288|TPD52L2|7165|tumor protein D52-like 2##NM_199359|TPD52L2|7165|tumor protein D52-like 2##NM_199360|TPD52L2|7165|tumor protein D52-like 2##NM_199361|TPD52L2|7165|tumor protein D52-like 2##NM_199362|TPD52L2|7165|tumor protein D52-like 2##NM_199363|TPD52L2|7165|tumor protein D52-like 2##AK298366|TPD52L2|7165|tumor protein D52-like 2##AK055068|TPD52L2|7165|tumor protein D52-like 2##AK297064|TPD52L2|7165|tumor protein D52-like 2##AK314501|TPD52L2|7165|tumor protein D52-like 2##AF004430|TPD52L2|7165|tumor protein D52-like 2##AK223031|TPD52L2|7165|tumor protein D52-like 2	0.96963	denovo_WM_21:47:0.960
chr11	59382289	59382411	reg1001030.p1	5.423	+	NM_001004711	-99965	+	NM_001004706	-111302	+	BC136893 BC136894 NM_001004705	-137477	+	TSC_hg19_v1_chr11_-_59383172 BC051350 BC063121	819	-	TSC_hg19_v1_chr11_-_59383232 BC011581	860	-	AF185696 M86917 NM_002556	1266	-	NM_001004711|OR4D9|390199|olfactory receptor, family 4, subfamily D, member 9##NM_001004706|OR4D11|219986|olfactory receptor, family 4, subfamily D, member 11##BC136893|OR4D10|390197|olfactory receptor, family 4, subfamily D, member 10##BC136894|OR4D10|390197|olfactory receptor, family 4, subfamily D, member 10##NM_001004705|OR4D10|390197|olfactory receptor, family 4, subfamily D, member 10##BC051350|OSBP|5007|oxysterol binding protein##BC063121|OSBP|5007|oxysterol binding protein##BC011581|OSBP|5007|oxysterol binding protein##AF185696|OSBP|5007|oxysterol binding protein##M86917|OSBP|5007|oxysterol binding protein##NM_002556|OSBP|5007|oxysterol binding protein	0.0	
chr16	75551200	75551340	reg1001211.p1	5.419	+	TSC_hg19_v1_chr16_-_75529303 AK311527 AK093904	-21973	-	TSC_hg19_v1_chr16_-_75529279 AF219990	-21991	-	AF280086 NM_021615	-22345	-	AF246718 NM_024533	17797	-	CU679755 TSC_hg19_v1_chr16_-_75590137 AK096650 NM_001077416 BC010609 AK307263 AK025820 BC063677 AY358612 AK290483 NM_001077418 NM_001077419	38896	-	AB030710 NM_007285 TSC_hg19_v1_chr16_+_75600274 BC029601	48991	+	AF280086|CHST6|4166|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6##NM_021615|CHST6|4166|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6##AF246718|CHST5|23563|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5##NM_024533|CHST5|23563|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5##AK096650|TMEM231|79583|transmembrane protein 231##NM_001077416|TMEM231|79583|transmembrane protein 231##BC010609|TMEM231|79583|transmembrane protein 231##AK307263|TMEM231|79583|transmembrane protein 231##AK025820|TMEM231|79583|transmembrane protein 231##BC063677|TMEM231|79583|transmembrane protein 231##AY358612|TMEM231|79583|transmembrane protein 231##AK290483|TMEM231|79583|transmembrane protein 231##NM_001077418|TMEM231|79583|transmembrane protein 231##NM_001077419|TMEM231|79583|transmembrane protein 231##AB030710|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##NM_007285|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##BC029601|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2	0.300884	denovo_WM_21:24:0.301
chr19	37742598	37742733	reg1001101.p1	5.418	+	AK093182 AX747975 AY438646 NM_152604	-25300	+	TSC_hg19_v1_chr19_+_37709098 AK122892	-33517	+	BC051277 BC067088 BC080550 TSC_hg19_v1_chr19_-_37701446 AY147015 NM_152279	-41248	-	TSC_hg19_v1_chr19_+_37808794 AK056243	66160	+	TSC_hg19_v1_chr19_+_37825560 AK301601 AB013897 AK299969 AK223616 BC017256 NM_181786 BC010024	82890	+	TSC_hg19_v1_chr19_+_37862089 NM_032453 BC014325 AK301135 AK091585 AX747074	119416	+	AK093182|ZNF383|163087|zinc finger protein 383##AY438646|ZNF383|163087|zinc finger protein 383##NM_152604|ZNF383|163087|zinc finger protein 383##AK122892|ZNF383|163087|zinc finger protein 383##BC051277|ZNF585B|92285|zinc finger protein 585B##BC067088|ZNF585B|92285|zinc finger protein 585B##BC080550|ZNF585B|92285|zinc finger protein 585B##AY147015|ZNF585B|92285|zinc finger protein 585B##NM_152279|ZNF585B|92285|zinc finger protein 585B##AK056243|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##AK301601|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##AB013897|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##AK299969|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##AK223616|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##BC017256|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##NM_181786|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##BC010024|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##NM_032453|ZNF527|84503|zinc finger protein 527##BC014325|ZNF527|84503|zinc finger protein 527##AK301135|ZNF527|84503|zinc finger protein 527##AK091585|ZNF527|84503|zinc finger protein 527	1.182918	denovo_WM_21:-7:0.217	denovo_WM_21:84:0.904
chr19	45681919	45682052	reg1000278.p2	5.406	+	TSC_hg19_v1_chr19_-_45681496 FJ418644 BC001907 NM_024108 BC004450 AF161407	-507	-	NM_198478	-18578	-	TSC_hg19_v1_chr19_+_45596436 NM_019121	-85563	+	NM_212550 AK296695 TSC_hg19_v1_chr19_+_45682022	28	+	AK225791 AK093466 AX748143 NM_138568	55482	-	TSC_hg19_v1_chr19_+_45754522 NM_001199867 NM_031417 AB049127 AB088047	72542	+	FJ418644|TRAPPC6A|79090|trafficking protein particle complex 6A##BC001907|TRAPPC6A|79090|trafficking protein particle complex 6A##NM_024108|TRAPPC6A|79090|trafficking protein particle complex 6A##BC004450|TRAPPC6A|79090|trafficking protein particle complex 6A##AF161407|TRAPPC6A|79090|trafficking protein particle complex 6A##NM_198478|NKPD1|284353|NTPase, KAP family P-loop domain containing 1##NM_019121|PPP1R37|284352|protein phosphatase 1, regulatory subunit 37##NM_212550|BLOC1S3|388552|biogenesis of lysosomal organelles complex-1, subunit 3##AK296695|BLOC1S3|388552|biogenesis of lysosomal organelles complex-1, subunit 3##AK225791|EXOC3L2|90332|exocyst complex component 3-like 2##AK093466|EXOC3L2|90332|exocyst complex component 3-like 2##NM_138568|EXOC3L2|90332|exocyst complex component 3-like 2##NM_001199867|MARK4|57787|MAP/microtubule affinity-regulating kinase 4##NM_031417|MARK4|57787|MAP/microtubule affinity-regulating kinase 4##AB049127|MARK4|57787|MAP/microtubule affinity-regulating kinase 4##AB088047|MARK4|57787|MAP/microtubule affinity-regulating kinase 4	0.742657	denovo_WM_21:11:0.712
chr17	1620447	1620632	reg1000182.p2	5.404	+	AK298567 NM_001163673 NM_152348 AK091136 AX746799 BC114519 BC114568	-684	+	BC119720 BC119721 TSC_hg19_v1_chr17_-_1619503 BX648321 BX640650	-1051	-	NM_001164407	-6878	-	AK127946 NM_001163811 TSC_hg19_v1_chr17_+_1628006	7381	+	TSC_hg19_v1_chr17_+_1628049 NM_001163809	7539	+	TSC_hg19_v1_chr17_+_1631333 AL834379 BC092513	10826	+	AK298567|WDR81|124997|WD repeat domain 81##NM_001163673|WDR81|124997|WD repeat domain 81##NM_152348|WDR81|124997|WD repeat domain 81##AK091136|WDR81|124997|WD repeat domain 81##BC114519|WDR81|124997|WD repeat domain 81##BC114568|WDR81|124997|WD repeat domain 81##BC119720|MIR22HG|84981|MIR22 host gene (non-protein coding)##BC119721|MIR22HG|84981|MIR22 host gene (non-protein coding)##BX648321|MIR22HG|84981|MIR22 host gene (non-protein coding)##BX640650|MIR22HG|84981|MIR22 host gene (non-protein coding)##NM_001164407|TLCD2|727910|TLC domain containing 2##AK127946|WDR81|124997|WD repeat domain 81##NM_001163811|WDR81|124997|WD repeat domain 81##NM_001163809|WDR81|124997|WD repeat domain 81##AL834379|WDR81|124997|WD repeat domain 81##BC092513|WDR81|124997|WD repeat domain 81	1.782419	denovo_WM_21:-12:0.988	denovo_WM_21:-42:0.795
chr1	184724046	184724199	reg1000929.p1	5.401	+	TSC_hg19_v1_chr1_-_184724031 NM_025191	-91	-	AK023095 TSC_hg19_v1_chr1_-_184724001	-118	-	AK225171 TSC_hg19_v1_chr1_-_184723985 AK315118	-138	-	BC018532 AK022527 AY550972 TSC_hg19_v1_chr1_-_184943641 BC030531 AK310557 AK311019 AK127373 AB050477	219467	-	TSC_hg19_v1_chr1_-_184943680 AF288391 NM_052966	219567	-	TSC_hg19_v1_chr1_+_185014449 NM_007212 AF141327	290381	+	NM_025191|EDEM3|80267|ER degradation enhancer, mannosidase alpha-like 3##AK023095|EDEM3|80267|ER degradation enhancer, mannosidase alpha-like 3##AK225171|EDEM3|80267|ER degradation enhancer, mannosidase alpha-like 3##AK315118|EDEM3|80267|ER degradation enhancer, mannosidase alpha-like 3##BC018532|FAM129A|116496|family with sequence similarity 129, member A##AK022527|FAM129A|116496|family with sequence similarity 129, member A##AY550972|FAM129A|116496|family with sequence similarity 129, member A##BC030531|FAM129A|116496|family with sequence similarity 129, member A##AK310557|FAM129A|116496|family with sequence similarity 129, member A##AK311019|FAM129A|116496|family with sequence similarity 129, member A##AB050477|FAM129A|116496|family with sequence similarity 129, member A##AF288391|FAM129A|116496|family with sequence similarity 129, member A##NM_052966|FAM129A|116496|family with sequence similarity 129, member A##NM_007212|RNF2|6045|ring finger protein 2##AF141327|RNF2|6045|ring finger protein 2	0.165534	
chr19	55973261	55973360	reg1000110.p2	5.400	+	NM_001136201 NM_001136202 NM_024710 TSC_hg19_v1_chr19_-_55973052	-255	-	AK311540 TSC_hg19_v1_chr19_-_55973007 AK027122	-301	-	BC017344 TSC_hg19_v1_chr19_-_55972980	-347	-	BC089449 NM_033113	14388	+	TSC_hg19_v1_chr19_+_55996577 NM_020378 AF086533 BC019079 AB038651	23262	+	TSC_hg19_v1_chr19_+_55999863 AK092577 AX747607 NM_001144950 NM_001195267	26554	+	NM_001136201|ISOC2|79763|isochorismatase domain containing 2##NM_001136202|ISOC2|79763|isochorismatase domain containing 2##NM_024710|ISOC2|79763|isochorismatase domain containing 2##AK311540|ISOC2|79763|isochorismatase domain containing 2##AK027122|ISOC2|79763|isochorismatase domain containing 2##BC017344|ISOC2|79763|isochorismatase domain containing 2##BC089449|ZNF628|89887|zinc finger protein 628##NM_033113|ZNF628|89887|zinc finger protein 628##NM_020378|NAT14|57106|N-acetyltransferase 14 (GCN5-related, putative)##AF086533|NAT14|57106|N-acetyltransferase 14 (GCN5-related, putative)##BC019079|NAT14|57106|N-acetyltransferase 14 (GCN5-related, putative)##AB038651|NAT14|57106|N-acetyltransferase 14 (GCN5-related, putative)##AK092577|SSC5D|284297|scavenger receptor cysteine rich domain containing (5 domains)##NM_001144950|SSC5D|284297|scavenger receptor cysteine rich domain containing (5 domains)##NM_001195267|SSC5D|284297|scavenger receptor cysteine rich domain containing (5 domains)	0.0	
chr12	68726193	68726323	reg1000999.p1	5.389	+	TSC_hg19_v1_chr12_-_68726142 BC010622 AK297311 BC034945 BC022042 AF267851 BC028355 AK314461 NM_001205028 NM_001205029 NM_017440 NM_020128	-152	-	CU686738 AB590805 BC066264 BC066263 BC066265 BC066266 BC067510 BC069308 BC067509 NM_020525 AF279437 AY358890 BC070261 AJ277247 BC069112	-78954	-	CU688126 CU688128 BC066270 BC066271 AJ251549 NM_018402	-106706	-	TSC_hg19_v1_chr12_+_69004678 NM_001010942 NM_001251917 NM_001251918 NM_001251921 NM_001251922 NM_015646	278388	+	TSC_hg19_v1_chr12_+_69004704 AK312371 BC078173 AK316447 AJ420497 AK298818 AK316543	278437	+	AK301401 AK301428 TSC_hg19_v1_chr12_+_69004708	278450	+	BC010622|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AK297311|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC034945|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC022042|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AF267851|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC028355|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AK314461|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_001205028|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_001205029|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_017440|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_020128|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC066264|IL22|50616|interleukin 22##BC066263|IL22|50616|interleukin 22##BC066265|IL22|50616|interleukin 22##BC066266|IL22|50616|interleukin 22##BC067510|IL22|50616|interleukin 22##BC069308|IL22|50616|interleukin 22##BC067509|IL22|50616|interleukin 22##NM_020525|IL22|50616|interleukin 22##AF279437|IL22|50616|interleukin 22##AY358890|IL22|50616|interleukin 22##BC070261|IL22|50616|interleukin 22##AJ277247|IL22|50616|interleukin 22##BC069112|IL22|50616|interleukin 22##BC066270|IL26|55801|interleukin 26##BC066271|IL26|55801|interleukin 26##AJ251549|IL26|55801|interleukin 26##NM_018402|IL26|55801|interleukin 26##NM_001010942|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251917|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251918|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251921|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251922|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_015646|RAP1B|5908|RAP1B, member of RAS oncogene family##AK312371|RAP1B|5908|RAP1B, member of RAS oncogene family##BC078173|RAP1B|5908|RAP1B, member of RAS oncogene family##AK316447|RAP1B|5908|RAP1B, member of RAS oncogene family##AJ420497|RAP1B|5908|RAP1B, member of RAS oncogene family##AK298818|RAP1B|5908|RAP1B, member of RAS oncogene family##AK316543|RAP1B|5908|RAP1B, member of RAS oncogene family##AK301401|RAP1B|5908|RAP1B, member of RAS oncogene family##AK301428|RAP1B|5908|RAP1B, member of RAS oncogene family	0.716835	denovo_WM_21:5:0.542
chr16	57569978	57570077	reg1001059.p2	5.387	+	BC003541 TSC_hg19_v1_chr16_-_57520403 NM_018110 AK001350	-49642	-	TSC_hg19_v1_chr16_+_57496590 BC003159 AK300124 AK293112 BC028157 AJ224143 AJ224144 J05448 BC000409 AB464040 AF008443 CR542041 DQ891411 DQ894586 EU176305	-73422	+	TSC_hg19_v1_chr16_+_57496570 AK295582	-73456	+	BC008285 BC009941 NM_033212	438	-	TSC_hg19_v1_chr16_+_57576554 AK303661 AK292783 AK160368 AY358447 AK301357	6527	+	TSC_hg19_v1_chr16_+_57576577 BC032401 NM_153837	6561	+	BC003541|DOK4|55715|docking protein 4##NM_018110|DOK4|55715|docking protein 4##AK001350|DOK4|55715|docking protein 4##BC003159|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##AK300124|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##AK293112|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##BC028157|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##AJ224143|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##AJ224144|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##J05448|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##BC000409|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##AF008443|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##CR542041|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##DQ891411|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##DQ894586|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##EU176305|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##BC008285|CCDC102A|92922|coiled-coil domain containing 102A##BC009941|CCDC102A|92922|coiled-coil domain containing 102A##NM_033212|CCDC102A|92922|coiled-coil domain containing 102A##AK303661|GPR114|221188|G protein-coupled receptor 114##AK292783|GPR114|221188|G protein-coupled receptor 114##AK160368|GPR114|221188|G protein-coupled receptor 114##AY358447|GPR114|221188|G protein-coupled receptor 114##AK301357|GPR114|221188|G protein-coupled receptor 114##BC032401|GPR114|221188|G protein-coupled receptor 114##NM_153837|GPR114|221188|G protein-coupled receptor 114	1.000337	denovo_WM_21:5:0.988
chr19	48867449	48867624	reg1001045.p1	5.386	+	TSC_hg19_v1_chr19_-_48867198 BC004363 BC040021 AY358161 BC016919 NM_018273 AK001784 AK291521 AK294408 AK297591 AK297610 AK298317 AK129801 AK303635	-267	-	TSC_hg19_v1_chr19_+_48828847 BC009718 U52101	-38702	+	TSC_hg19_v1_chr19_+_48828629 NM_001425 U87947	-38896	+	NM_012451 BC106891	173	+	CU676330 DQ891992 DQ895182 TSC_hg19_v1_chr19_-_48894672	27108	-	X55885 TSC_hg19_v1_chr19_-_48894809 BC008958 AB097047 BC018778 NM_006801 AK312647	27262	-	BC040021|TMEM143|55260|transmembrane protein 143##AY358161|TMEM143|55260|transmembrane protein 143##BC016919|TMEM143|55260|transmembrane protein 143##NM_018273|TMEM143|55260|transmembrane protein 143##AK291521|TMEM143|55260|transmembrane protein 143##AK294408|TMEM143|55260|transmembrane protein 143##AK297591|TMEM143|55260|transmembrane protein 143##AK297610|TMEM143|55260|transmembrane protein 143##AK298317|TMEM143|55260|transmembrane protein 143##AK129801|TMEM143|55260|transmembrane protein 143##AK303635|TMEM143|55260|transmembrane protein 143##BC009718|EMP3|2014|epithelial membrane protein 3##U52101|EMP3|2014|epithelial membrane protein 3##NM_001425|EMP3|2014|epithelial membrane protein 3##U87947|EMP3|2014|epithelial membrane protein 3##NM_012451|SYNGR4|23546|synaptogyrin 4##BC106891|SYNGR4|23546|synaptogyrin 4##DQ891992|KDELR1|10945|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1##DQ895182|KDELR1|10945|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1##X55885|KDELR1|10945|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1##BC008958|KDELR1|10945|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1##AB097047|KDELR1|10945|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1##BC018778|KDELR1|10945|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1##NM_006801|KDELR1|10945|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1##AK312647|KDELR1|10945|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	0.694486	denovo_WM_21:36:0.694
chr6_mcf_hap5	3525915	3526008	reg1000587.p2	5.386	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.391695	
chr5	82373229	82373362	reg1000961.p1	5.378	+	TSC_hg19_v1_chr5_-_82373255 NM_174909	-33	-	BC026285 TSC_hg19_v1_chr5_-_82373172 BX647979 BC107575 BC070122 BC028585	-98	-	BC093982 BC112191 NM_001017971	-772130	+	NM_003401 NM_022406 NM_022550 TSC_hg19_v1_chr5_+_82373411 BC005259 AK290739 BC016314 U40622 AB017445	88	+	NM_001126336 NM_001164097 NM_001164098 NM_004385 TSC_hg19_v1_chr5_+_82767562 U16306 U26555 X15998 AK307642 AB209491 BC050524 D32039	394322	+	AK313713 NM_001884 X17405 X78076 X78075	643639	-	NM_174909|TMEM167A|153339|transmembrane protein 167A##BC026285|TMEM167A|153339|transmembrane protein 167A##BX647979|TMEM167A|153339|transmembrane protein 167A##BC107575|TMEM167A|153339|transmembrane protein 167A##BC070122|TMEM167A|153339|transmembrane protein 167A##BC028585|TMEM167A|153339|transmembrane protein 167A##BC093982|ATP6AP1L|92270|ATPase, H+ transporting, lysosomal accessory protein 1-like##BC112191|ATP6AP1L|92270|ATPase, H+ transporting, lysosomal accessory protein 1-like##NM_001017971|ATP6AP1L|92270|ATPase, H+ transporting, lysosomal accessory protein 1-like##NM_003401|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##NM_022406|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##NM_022550|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##BC005259|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##AK290739|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##BC016314|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##U40622|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##AB017445|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##NM_001126336|VCAN|1462|versican##NM_001164097|VCAN|1462|versican##NM_001164098|VCAN|1462|versican##NM_004385|VCAN|1462|versican##U16306|VCAN|1462|versican##U26555|VCAN|1462|versican##X15998|VCAN|1462|versican##AK307642|VCAN|1462|versican##AB209491|VCAN|1462|versican##BC050524|VCAN|1462|versican##D32039|VCAN|1462|versican##AK313713|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##NM_001884|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##X17405|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##X78076|HAPLN1|1404|hyaluronan and proteoglycan link protein 1	0.981186	denovo_WM_21:71:0.981
chr12	131962147	131962284	reg1000871.p1	5.366	+	BX649116 NM_198827 TSC_hg19_v1_chr12_+_131438455	-523762	+	TSC_hg19_v1_chr12_+_131356640 BC072000 BC014901 BC004272 BC016654	-605504	+	AK300934 TSC_hg19_v1_chr12_+_131356617 BC014518 AL357616 BC051908	-605590	+	TSC_hg19_v1_chr12_+_132195623 BC142980	233398	+	TSC_hg19_v1_chr12_+_132195639 BC024041 AK295149 AK310836 BC008707 BC015953 NM_004592 AB208921 U08377 BC113420 BC136678 BC144364	233441	+	TSC_hg19_v1_chr12_+_132312945 BC045610 AB021225 NM_016155 BC040507	350751	+	BX649116|GPR133|283383|G protein-coupled receptor 133##NM_198827|GPR133|283383|G protein-coupled receptor 133##BC072000|RAN|5901|RAN, member RAS oncogene family##BC014901|RAN|5901|RAN, member RAS oncogene family##BC004272|RAN|5901|RAN, member RAS oncogene family##BC016654|RAN|5901|RAN, member RAS oncogene family##AK300934|RAN|5901|RAN, member RAS oncogene family##BC014518|RAN|5901|RAN, member RAS oncogene family##AL357616|RAN|5901|RAN, member RAS oncogene family##BC051908|RAN|5901|RAN, member RAS oncogene family##BC142980|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC024041|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC008707|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC015953|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##NM_004592|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##AB208921|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##U08377|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC113420|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC136678|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC144364|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC045610|MMP17|4326|matrix metallopeptidase 17 (membrane-inserted)##AB021225|MMP17|4326|matrix metallopeptidase 17 (membrane-inserted)##NM_016155|MMP17|4326|matrix metallopeptidase 17 (membrane-inserted)##BC040507|MMP17|4326|matrix metallopeptidase 17 (membrane-inserted)	0.0	
chr16	3493548	3493670	reg1000865.p1	5.365	+	BC029899 NM_152457 AK057633	-115	-	TSC_hg19_v1_chr16_+_3451250 NM_001032292 NM_003450 BC001161 BC000876 U31248	-42323	+	BC002859 TSC_hg19_v1_chr16_-_3450980 AK301586 AK056463 AK291213 AK299070 AK303338 AY261676 NM_017810	-42616	-	TSC_hg19_v1_chr16_+_3493690 NM_001083601 AK297219 AL833594	73	+	TSC_hg19_v1_chr16_+_3508044 NM_001083600 NM_024845 AK092005 AK298566 AK024216 AK130792 AK225178 AK311524 AY358543 AK302361	14536	+	AK095819 TSC_hg19_v1_chr16_+_3533613	39937	+	BC029899|ZNF597|146434|zinc finger protein 597##NM_152457|ZNF597|146434|zinc finger protein 597##AK057633|ZNF597|146434|zinc finger protein 597##NM_001032292|ZNF174|7727|zinc finger protein 174##NM_003450|ZNF174|7727|zinc finger protein 174##BC001161|ZNF174|7727|zinc finger protein 174##BC000876|ZNF174|7727|zinc finger protein 174##U31248|ZNF174|7727|zinc finger protein 174##BC002859|ZNF434|54925|zinc finger protein 434##AK301586|ZNF434|54925|zinc finger protein 434##AK056463|ZNF434|54925|zinc finger protein 434##AK291213|ZNF434|54925|zinc finger protein 434##AK299070|ZNF434|54925|zinc finger protein 434##AY261676|ZNF434|54925|zinc finger protein 434##NM_017810|ZNF434|54925|zinc finger protein 434##NM_001083601|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit##AK297219|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit##AL833594|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit##NM_001083600|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit##NM_024845|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit##AK092005|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit##AK298566|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit##AK024216|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit##AK130792|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit##AK225178|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit##AK311524|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit##AY358543|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit##AK302361|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit##AK095819|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit	0.910372	denovo_WM_21:-57:0.900
chr2	232544402	232544472	reg1000778.p2	5.358	+	BC024251 NM_152614 BC034405 BC063389 DQ891288 DQ894472	-86820	+	AF272362 BC051914 AK300222 AK301102 NM_006056 BC036543	-149283	-	BC033054 TSC_hg19_v1_chr2_-_232379076	-165355	-	TSC_hg19_v1_chr2_+_232573239 NM_001099285 NM_002823 BC022433 AK223605 AK314106 M14630 BC034921	28797	+	BC001624 BC098420 BC070480 BC003510 BC051265 BC071879 BC071647 TSC_hg19_v1_chr2_+_232573265 M26708 M14483 BC066905 M14794 DQ892963 DQ896210 AF170294 AF348514 AY169282	28895	+	BT007278 CR456980 AB464015 DQ893223 DQ896553 AJ001626 TSC_hg19_v1_chr2_-_232645990 BC007831 AF022912 NM_002601 BC001054 AK311623	101488	-	NM_152614|C2orf57|165100|chromosome 2 open reading frame 57##BC034405|C2orf57|165100|chromosome 2 open reading frame 57##BC063389|C2orf57|165100|chromosome 2 open reading frame 57##DQ891288|C2orf57|165100|chromosome 2 open reading frame 57##DQ894472|C2orf57|165100|chromosome 2 open reading frame 57##AF272362|NMUR1|10316|neuromedin U receptor 1##BC051914|NMUR1|10316|neuromedin U receptor 1##AK300222|NMUR1|10316|neuromedin U receptor 1##NM_006056|NMUR1|10316|neuromedin U receptor 1##BC036543|NMUR1|10316|neuromedin U receptor 1##BC033054|LINC00471|151477|long intergenic non-protein coding RNA 471##NM_001099285|PTMA|5757|prothymosin, alpha##NM_002823|PTMA|5757|prothymosin, alpha##BC022433|PTMA|5757|prothymosin, alpha##AK223605|PTMA|5757|prothymosin, alpha##AK314106|PTMA|5757|prothymosin, alpha##M14630|PTMA|5757|prothymosin, alpha##BC034921|PTMA|5757|prothymosin, alpha##BC098420|PTMA|5757|prothymosin, alpha##BC070480|PTMA|5757|prothymosin, alpha##BC003510|PTMA|5757|prothymosin, alpha##BC051265|PTMA|5757|prothymosin, alpha##BC071879|PTMA|5757|prothymosin, alpha##BC071647|PTMA|5757|prothymosin, alpha##M26708|PTMA|5757|prothymosin, alpha##M14483|PTMA|5757|prothymosin, alpha##BC066905|PTMA|5757|prothymosin, alpha##M14794|PTMA|5757|prothymosin, alpha##DQ892963|PTMA|5757|prothymosin, alpha##DQ896210|PTMA|5757|prothymosin, alpha##AF348514|PTMA|5757|prothymosin, alpha##AY169282|PTMA|5757|prothymosin, alpha##BT007278|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##CR456980|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##DQ893223|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##DQ896553|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##AJ001626|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##BC007831|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##AF022912|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##NM_002601|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##BC001054|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta	0.0	
chr3	119813906	119814037	reg1000309.p2	5.354	+	TSC_hg19_v1_chr3_+_119813618 BC035247	-301	+	TSC_hg19_v1_chr3_-_119813270 BC012760 NM_001146156 NM_002093	-820	-	BC000251 AK290897 TSC_hg19_v1_chr3_-_119812684	-1350	-	NM_001168271 NM_153002	149170	-	TSC_hg19_v1_chr3_-_120068162 AB528173 AM393236 BC013757 NM_001099678	254170	-	TSC_hg19_v1_chr3_-_120169846 AB527652 D89937 BC000055 U06863 AK300356 AK289388 AK291138 AK311050 AK300436 BX647421 AK312261 NM_007085	355866	-	BC012760|GSK3B|2932|glycogen synthase kinase 3 beta##NM_001146156|GSK3B|2932|glycogen synthase kinase 3 beta##NM_002093|GSK3B|2932|glycogen synthase kinase 3 beta##BC000251|GSK3B|2932|glycogen synthase kinase 3 beta##AK290897|GSK3B|2932|glycogen synthase kinase 3 beta##NM_001168271|GPR156|165829|G protein-coupled receptor 156##NM_153002|GPR156|165829|G protein-coupled receptor 156##AM393236|LRRC58|116064|leucine rich repeat containing 58##BC013757|LRRC58|116064|leucine rich repeat containing 58##NM_001099678|LRRC58|116064|leucine rich repeat containing 58##BC000055|FSTL1|11167|follistatin-like 1##U06863|FSTL1|11167|follistatin-like 1##AK300356|FSTL1|11167|follistatin-like 1##AK289388|FSTL1|11167|follistatin-like 1##AK291138|FSTL1|11167|follistatin-like 1##AK311050|FSTL1|11167|follistatin-like 1##AK300436|FSTL1|11167|follistatin-like 1##BX647421|FSTL1|11167|follistatin-like 1##AK312261|FSTL1|11167|follistatin-like 1##NM_007085|FSTL1|11167|follistatin-like 1	1.023949	denovo_WM_21:40:0.324	denovo_WM_21:61:0.508
chr5	172484141	172484256	reg1001153.p2	5.350	+	TSC_hg19_v1_chr5_+_172483354 BX647768 NM_001168393 NM_001168394 NM_153607 AK300043 AY139008 BC041709 AY174896 AK124117 BX647573 AK291677	-814	+	TSC_hg19_v1_chr5_+_172410833 CR456856 CR542131	-73354	+	NM_003945 TSC_hg19_v1_chr5_+_172410801 BC119715 BC119714 AK312068 Y15286	-73416	+	TSC_hg19_v1_chr5_+_172484383 AK297424	185	+	NM_001205 NM_013978 NM_013979 NM_013980 BC010959 TSC_hg19_v1_chr5_+_172571536 AF083957 AF083958 U15172 AB527856 CU679862 AF083956 AY216799	87298	+	AB021133 CU693024 AB464641 DQ893313 DQ894104 DQ896627 BC025711 AK290615 AK307249 AK297844 AK307218 AK309495 U34962 AK307247 NM_001166175 NM_001166176 NM_004387	178001	-	BX647768|C5orf41|153222|chromosome 5 open reading frame 41##NM_001168393|C5orf41|153222|chromosome 5 open reading frame 41##NM_001168394|C5orf41|153222|chromosome 5 open reading frame 41##NM_153607|C5orf41|153222|chromosome 5 open reading frame 41##AK300043|C5orf41|153222|chromosome 5 open reading frame 41##AY139008|C5orf41|153222|chromosome 5 open reading frame 41##BC041709|C5orf41|153222|chromosome 5 open reading frame 41##AY174896|C5orf41|153222|chromosome 5 open reading frame 41##AK124117|C5orf41|153222|chromosome 5 open reading frame 41##BX647573|C5orf41|153222|chromosome 5 open reading frame 41##AK291677|C5orf41|153222|chromosome 5 open reading frame 41##CR456856|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##CR542131|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##NM_003945|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##BC119715|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##BC119714|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##AK312068|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##Y15286|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##AK297424|C5orf41|153222|chromosome 5 open reading frame 41##NM_001205|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##NM_013978|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##NM_013979|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##NM_013980|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##BC010959|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AF083957|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AF083958|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##U15172|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AF083956|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AY216799|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AB021133|NKX2-5|1482|NK2 homeobox 5##DQ893313|NKX2-5|1482|NK2 homeobox 5##DQ894104|NKX2-5|1482|NK2 homeobox 5##DQ896627|NKX2-5|1482|NK2 homeobox 5##BC025711|NKX2-5|1482|NK2 homeobox 5##AK290615|NKX2-5|1482|NK2 homeobox 5##AK307249|NKX2-5|1482|NK2 homeobox 5##AK297844|NKX2-5|1482|NK2 homeobox 5##AK307218|NKX2-5|1482|NK2 homeobox 5##AK309495|NKX2-5|1482|NK2 homeobox 5##U34962|NKX2-5|1482|NK2 homeobox 5##AK307247|NKX2-5|1482|NK2 homeobox 5##NM_001166175|NKX2-5|1482|NK2 homeobox 5##NM_001166176|NKX2-5|1482|NK2 homeobox 5##NM_004387|NKX2-5|1482|NK2 homeobox 5	0.190224	
chr16	31884998	31885114	reg1001137.p1	5.347	+	TSC_hg19_v1_chr16_+_31724584 AK299345 AK128671 BC018134 AX721120	-160455	+	TSC_hg19_v1_chr16_+_31724564 AL832197	-160491	+	TSC_hg19_v1_chr16_+_31724557 NM_001130913 BC055408	-160510	+	TSC_hg19_v1_chr16_+_31885098 NM_003414	31	+	TSC_hg19_v1_chr16_+_31885114 AK096390	60	+	AF220492 TSC_hg19_v1_chr16_+_31885131	76	+	AK128671|ZNF720|124411|zinc finger protein 720##BC018134|ZNF720|124411|zinc finger protein 720##AL832197|ZNF720|124411|zinc finger protein 720##NM_001130913|ZNF720|124411|zinc finger protein 720##BC055408|ZNF720|124411|zinc finger protein 720##NM_003414|ZNF267|10308|zinc finger protein 267##AK096390|ZNF267|10308|zinc finger protein 267##AF220492|ZNF267|10308|zinc finger protein 267	1.552699	denovo_WM_21:8:0.705	denovo_WM_21:-20:0.848
chr11	535611	535722	reg1000869.p1	5.344	+	TSC_hg19_v1_chr11_-_535567 BC006499 NM_001130442 NM_005343 NM_176795	-103	-	TSC_hg19_v1_chr11_-_507243 NM_203386 NM_203387 NM_203388 NM_203389	-28401	-	TSC_hg19_v1_chr11_-_507225 BC003075 BC000677 BC014629 AK310173 BC011500 M22414	-28462	-	NM_198075 TSC_hg19_v1_chr11_+_537526 BC035936 BC035937	1860	+	TSC_hg19_v1_chr11_-_560721 BC039077 NM_173573	25076	-	TSC_hg19_v1_chr11_+_560986 NM_001143993	25310	+	BC006499|HRAS|3265|v-Ha-ras Harvey rat sarcoma viral oncogene homolog##NM_001130442|HRAS|3265|v-Ha-ras Harvey rat sarcoma viral oncogene homolog##NM_005343|HRAS|3265|v-Ha-ras Harvey rat sarcoma viral oncogene homolog##NM_176795|HRAS|3265|v-Ha-ras Harvey rat sarcoma viral oncogene homolog##NM_203386|RNH1|6050|ribonuclease/angiogenin inhibitor 1##NM_203387|RNH1|6050|ribonuclease/angiogenin inhibitor 1##NM_203388|RNH1|6050|ribonuclease/angiogenin inhibitor 1##NM_203389|RNH1|6050|ribonuclease/angiogenin inhibitor 1##BC000677|RNH1|6050|ribonuclease/angiogenin inhibitor 1##BC014629|RNH1|6050|ribonuclease/angiogenin inhibitor 1##AK310173|RNH1|6050|ribonuclease/angiogenin inhibitor 1##BC011500|RNH1|6050|ribonuclease/angiogenin inhibitor 1##M22414|RNH1|6050|ribonuclease/angiogenin inhibitor 1##NM_198075|LRRC56|115399|leucine rich repeat containing 56##BC035936|LRRC56|115399|leucine rich repeat containing 56##BC035937|LRRC56|115399|leucine rich repeat containing 56##BC039077|C11orf35|256329|chromosome 11 open reading frame 35##NM_173573|C11orf35|256329|chromosome 11 open reading frame 35##NM_001143993|RASSF7|8045|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7	0.465932	denovo_WM_21:-41:0.390
chr1	1624386	1624571	reg1001052.p1	5.336	+	AB007916 TSC_hg19_v1_chr1_-_1624212 NM_001110781	-261	-	BC092507 TSC_hg19_v1_chr1_-_1624149 AK125619	-320	-	TSC_hg19_v1_chr1_-_1623947 CR936618 BC062371	-513	-	TSC_hg19_v1_chr1_-_1655767 AK303446 AF067518 AF067519 AF067520 AF067521 AF067522 AF067523 AK301495 AK304679 BC009375 AF067512 AF067513 AF067514 AF067515 AF067516 AF067517 AK303451 NM_033486 NM_033487 NM_033488 NM_033489 NM_033492 NM_033493 U04816 U04817 U04818 U04824 U07704 U07705 NM_024011 NM_033529	31298	-	AL049665 NM_001199787 NM_182838 TSC_hg19_v1_chr1_-_1677454 BC110653	52983	-	AK296722 NM_001198995	65602	-	AB007916|SLC35E2B|728661|solute carrier family 35, member E2B##NM_001110781|SLC35E2B|728661|solute carrier family 35, member E2B##BC092507|SLC35E2B|728661|solute carrier family 35, member E2B##AK125619|SLC35E2B|728661|solute carrier family 35, member E2B##CR936618|SLC35E2B|728661|solute carrier family 35, member E2B##BC062371|SLC35E2|9906|solute carrier family 35, member E2##AK303446|CDK11B|984|cyclin-dependent kinase 11B##AF067518|CDK11A|728642|cyclin-dependent kinase 11A##AF067519|CDK11A|728642|cyclin-dependent kinase 11A##AF067520|CDK11A|728642|cyclin-dependent kinase 11A##AF067521|CDK11A|728642|cyclin-dependent kinase 11A##AF067522|CDK11A|728642|cyclin-dependent kinase 11A##AF067523|CDK11A|728642|cyclin-dependent kinase 11A##AK301495|CDK11B|984|cyclin-dependent kinase 11B##AK304679|CDK11B|984|cyclin-dependent kinase 11B##BC009375|CDK11B|984|cyclin-dependent kinase 11B##AF067512|CDK11B|984|cyclin-dependent kinase 11B##AF067513|CDK11B|984|cyclin-dependent kinase 11B##AF067514|CDK11B|984|cyclin-dependent kinase 11B##AF067515|CDK11B|984|cyclin-dependent kinase 11B##AF067516|CDK11B|984|cyclin-dependent kinase 11B##AF067517|CDK11B|984|cyclin-dependent kinase 11B##AK303451|CDK11B|984|cyclin-dependent kinase 11B##NM_033486|CDK11B|984|cyclin-dependent kinase 11B##NM_033487|CDK11B|984|cyclin-dependent kinase 11B##NM_033488|CDK11B|984|cyclin-dependent kinase 11B##NM_033489|CDK11B|984|cyclin-dependent kinase 11B##NM_033492|CDK11B|984|cyclin-dependent kinase 11B##NM_033493|CDK11B|984|cyclin-dependent kinase 11B##U04816|CDK11B|984|cyclin-dependent kinase 11B##U04817|CDK11B|984|cyclin-dependent kinase 11B##U04818|CDK11B|984|cyclin-dependent kinase 11B##U04824|CDK11B|984|cyclin-dependent kinase 11B##U07704|CDK11A|728642|cyclin-dependent kinase 11A##U07705|CDK11A|728642|cyclin-dependent kinase 11A##NM_024011|CDK11A|728642|cyclin-dependent kinase 11A##NM_033529|CDK11A|728642|cyclin-dependent kinase 11A##AL049665|SLC35E2|9906|solute carrier family 35, member E2##NM_001199787|SLC35E2|9906|solute carrier family 35, member E2##NM_182838|SLC35E2|9906|solute carrier family 35, member E2##BC110653|SLC35E2B|728661|solute carrier family 35, member E2B##AK296722|NADK|65220|NAD kinase##NM_001198995|NADK|65220|NAD kinase	0.0	
chr12	121837734	121837865	reg1000945.p1	5.334	+	AK025614 NM_001137559	-45788	-	TSC_hg19_v1_chr12_-_121790244 NM_016237	-47533	-	TSC_hg19_v1_chr12_-_121790212 BC001081 BC001950 BC006301 AK315451	-47610	-	AF306709 TSC_hg19_v1_chr12_+_121837931 NM_025126 NM_194271 AK025439 AK225285 AK304366 BC007826 BC039029 BC046174 BC029038	165	+	TSC_hg19_v1_chr12_-_121905104 BC028612 AK299827 AK316470	67275	-	TSC_hg19_v1_chr12_-_122018152 AK127328 NM_001005366	180460	-	AK025614|ANAPC5|51433|anaphase promoting complex subunit 5##NM_001137559|ANAPC5|51433|anaphase promoting complex subunit 5##NM_016237|ANAPC5|51433|anaphase promoting complex subunit 5##BC001081|ANAPC5|51433|anaphase promoting complex subunit 5##BC001950|ANAPC5|51433|anaphase promoting complex subunit 5##BC006301|ANAPC5|51433|anaphase promoting complex subunit 5##AK315451|ANAPC5|51433|anaphase promoting complex subunit 5##AF306709|RNF34|80196|ring finger protein 34##NM_025126|RNF34|80196|ring finger protein 34##NM_194271|RNF34|80196|ring finger protein 34##AK025439|RNF34|80196|ring finger protein 34##AK225285|RNF34|80196|ring finger protein 34##BC007826|RNF34|80196|ring finger protein 34##BC039029|RNF34|80196|ring finger protein 34##BC046174|RNF34|80196|ring finger protein 34##BC028612|KDM2B|84678|lysine (K)-specific demethylase 2B##AK299827|KDM2B|84678|lysine (K)-specific demethylase 2B##AK316470|KDM2B|84678|lysine (K)-specific demethylase 2B##AK127328|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_001005366|KDM2B|84678|lysine (K)-specific demethylase 2B	0.898046	denovo_WM_21:21:0.898
chr21	34915187	34915308	reg1001042.p1	5.331	+	AB208785 AK292560 BX648124 BC068438 NM_001136005 NM_001136006	-87	-	TSC_hg19_v1_chr21_-_34914447 NM_000819 NM_175085	-797	-	BC093641 BC101565 TSC_hg19_v1_chr21_-_34914412 D32051 X54199 BC107712 BC038958 AK292897	-848	-	TSC_hg19_v1_chr21_+_34915343 AK307612	95	+	TSC_hg19_v1_chr21_+_34915358 AY026895 NM_032195 NM_138927 AK127947	105	+	TSC_hg19_v1_chr21_+_34915378 AK024752 BC005337 AF161428 AF380179 AF380180 AF380181 AF380183 AF380184 AF161430 AB028942 BC046101 BC066303 AF435977 BC054029	130	+	AB208785|GART|2618|phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase##AK292560|GART|2618|phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase##BX648124|GART|2618|phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase##BC068438|GART|2618|phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase##NM_001136005|GART|2618|phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase##NM_001136006|GART|2618|phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase##NM_000819|GART|2618|phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase##NM_175085|GART|2618|phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase##BC093641|GART|2618|phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase##BC101565|GART|2618|phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase##D32051|GART|2618|phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase##X54199|GART|2618|phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase##BC107712|GART|2618|phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase##BC038958|GART|2618|phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase##AK292897|GART|2618|phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase##AK307612|SON|6651|SON DNA binding protein##AY026895|SON|6651|SON DNA binding protein##NM_032195|SON|6651|SON DNA binding protein##NM_138927|SON|6651|SON DNA binding protein##AK127947|SON|6651|SON DNA binding protein##AK024752|SON|6651|SON DNA binding protein##BC005337|SON|6651|SON DNA binding protein##AF161428|SON|6651|SON DNA binding protein##AF380179|SON|6651|SON DNA binding protein##AF380180|SON|6651|SON DNA binding protein##AF380181|SON|6651|SON DNA binding protein##AF380183|SON|6651|SON DNA binding protein##AF380184|SON|6651|SON DNA binding protein##AF161430|SON|6651|SON DNA binding protein##AB028942|SON|6651|SON DNA binding protein##BC046101|SON|6651|SON DNA binding protein##BC066303|SON|6651|SON DNA binding protein##AF435977|SON|6651|SON DNA binding protein##BC054029|SON|6651|SON DNA binding protein	1.642258	denovo_WM_21:0:0.699	denovo_WM_21:49:0.943
chr22	20067624	20067751	reg1001085.p2	5.330	+	AK297922 AK298593 TSC_hg19_v1_chr22_+_20008634 AK297075 AK316020 AK092484 AX747566 CR627452	-59044	+	TSC_hg19_v1_chr22_+_20008632 AK316056 BC041339 NM_152906 AK301054 AK301366 AK311676	-59070	+	TSC_hg19_v1_chr22_-_20004347 NM_001670 U51269	-63364	-	TSC_hg19_v1_chr22_+_20067801 NM_001190326 NM_022720 AK313357 BC037564 BC009984	95	+	AB527162 CU013064 CU013352 CU680570 BC013352 BC108251 TSC_hg19_v1_chr22_-_20104501 CR456354	36796	-	TSC_hg19_v1_chr22_-_20104718 BC017184	37024	-	AK297922|C22orf25|128989|chromosome 22 open reading frame 25##AK298593|C22orf25|128989|chromosome 22 open reading frame 25##AK297075|C22orf25|128989|chromosome 22 open reading frame 25##AK316020|C22orf25|128989|chromosome 22 open reading frame 25##AK092484|C22orf25|128989|chromosome 22 open reading frame 25##CR627452|C22orf25|128989|chromosome 22 open reading frame 25##AK316056|C22orf25|128989|chromosome 22 open reading frame 25##BC041339|C22orf25|128989|chromosome 22 open reading frame 25##NM_152906|C22orf25|128989|chromosome 22 open reading frame 25##AK301054|C22orf25|128989|chromosome 22 open reading frame 25##AK301366|C22orf25|128989|chromosome 22 open reading frame 25##AK311676|C22orf25|128989|chromosome 22 open reading frame 25##NM_001670|ARVCF|421|armadillo repeat gene deleted in velocardiofacial syndrome##U51269|ARVCF|421|armadillo repeat gene deleted in velocardiofacial syndrome##NM_001190326|DGCR8|54487|DiGeorge syndrome critical region gene 8##NM_022720|DGCR8|54487|DiGeorge syndrome critical region gene 8##AK313357|DGCR8|54487|DiGeorge syndrome critical region gene 8##BC037564|DGCR8|54487|DiGeorge syndrome critical region gene 8##BC009984|DGCR8|54487|DiGeorge syndrome critical region gene 8##BC013352|TRMT2A|27037|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)##BC108251|TRMT2A|27037|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)##CR456354|TRMT2A|27037|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)##BC017184|TRMT2A|27037|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	0.225044	denovo_WM_21:-9:0.201
chr20	56293633	56293762	reg1000795.p2	5.326	+	NM_199171	-7157	-	TSC_hg19_v1_chr20_-_56285634 BC080635 AF224278 AY128643 NM_199169 NM_199170 AX775887 AK296199	-8075	-	TSC_hg19_v1_chr20_+_56285236 AK056098	-8472	+	NM_178456 BC035405	432290	+	AK299330 AK057583 BC100979 BC100980 TSC_hg19_v1_chr20_-_56884511	590802	-	TSC_hg19_v1_chr20_+_56884770 NM_020673 BC063457 AF091034 AJ276210	591085	+	NM_199171|PMEPA1|56937|prostate transmembrane protein, androgen induced 1##BC080635|PMEPA1|56937|prostate transmembrane protein, androgen induced 1##AF224278|PMEPA1|56937|prostate transmembrane protein, androgen induced 1##AY128643|PMEPA1|56937|prostate transmembrane protein, androgen induced 1##NM_199169|PMEPA1|56937|prostate transmembrane protein, androgen induced 1##NM_199170|PMEPA1|56937|prostate transmembrane protein, androgen induced 1##AK296199|PMEPA1|56937|prostate transmembrane protein, androgen induced 1##NM_178456|C20orf85|128602|chromosome 20 open reading frame 85##BC035405|C20orf85|128602|chromosome 20 open reading frame 85##AK299330|PPP4R1L|55370|protein phosphatase 4, regulatory subunit 1-like##AK057583|PPP4R1L|55370|protein phosphatase 4, regulatory subunit 1-like##BC100979|PPP4R1L|55370|protein phosphatase 4, regulatory subunit 1-like##BC100980|PPP4R1L|55370|protein phosphatase 4, regulatory subunit 1-like##NM_020673|RAB22A|57403|RAB22A, member RAS oncogene family##BC063457|RAB22A|57403|RAB22A, member RAS oncogene family##AF091034|RAB22A|57403|RAB22A, member RAS oncogene family##AJ276210|RAB22A|57403|RAB22A, member RAS oncogene family	0.145994	
chr17	27621167	27621292	reg1000941.p1	5.324	+	TSC_hg19_v1_chr17_-_27621167 AK293075 NM_020772	-64	-	AB385448 AJ493465 BC129989 BC129990 BC108307 AK297732 TSC_hg19_v1_chr17_-_27621134 AB037742 AY232289	-119	-	NM_005208 BC113693 BC069537 CU686900 HQ258110	-47352	+	NM_020791 NM_025142 BC133039 BC144067	96716	+	TSC_hg19_v1_chr17_-_27893539 AK056717	272315	-	TSC_hg19_v1_chr17_-_27894056 BC012476 NM_198147 AY358212	272795	-	AK293075|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##NM_020772|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##AJ493465|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##BC129989|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##BC129990|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##BC108307|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##AK297732|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##AB037742|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##AY232289|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##NM_005208|CRYBA1|1411|crystallin, beta A1##BC113693|CRYBA1|1411|crystallin, beta A1##BC069537|CRYBA1|1411|crystallin, beta A1##HQ258110|CRYBA1|1411|crystallin, beta A1##NM_020791|TAOK1|57551|TAO kinase 1##NM_025142|TAOK1|57551|TAO kinase 1##BC133039|TAOK1|57551|TAO kinase 1##BC144067|TAOK1|57551|TAO kinase 1##AK056717|ABHD15|116236|abhydrolase domain containing 15##BC012476|ABHD15|116236|abhydrolase domain containing 15##NM_198147|ABHD15|116236|abhydrolase domain containing 15##AY358212|ABHD15|116236|abhydrolase domain containing 15	0.0	
chr16	11891272	11891456	reg1000925.p2	5.322	+	TSC_hg19_v1_chr16_-_11891103 NM_014153	-249	-	BC046363 BC036857 TSC_hg19_v1_chr16_-_11891096 AK091803 AX747194	-313	-	TSC_hg19_v1_chr16_-_11836686 AK297094 BX648407 AK027646 NM_015914 BC002856 BC018635	-54708	-	AY598331 HQ258262 HQ258426 AJ007398 BC019069 TSC_hg19_v1_chr16_-_11945392 AK000822 BC009802 BC017899 BC107782 BC070325 AY154473 BC112228 BC113699 BC016362 AL049999 AK295935 NM_015659	54040	-	TSC_hg19_v1_chr16_-_12009569 AB590486	118239	-	BC009503 TSC_hg19_v1_chr16_-_12009763 AK095483	118384	-	NM_014153|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC046363|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC036857|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AK091803|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AK297094|TXNDC11|51061|thioredoxin domain containing 11##BX648407|TXNDC11|51061|thioredoxin domain containing 11##AK027646|TXNDC11|51061|thioredoxin domain containing 11##NM_015914|TXNDC11|51061|thioredoxin domain containing 11##BC002856|TXNDC11|51061|thioredoxin domain containing 11##BC018635|TXNDC11|51061|thioredoxin domain containing 11##AY598331|RSL1D1|26156|ribosomal L1 domain containing 1##HQ258262|RSL1D1|26156|ribosomal L1 domain containing 1##HQ258426|RSL1D1|26156|ribosomal L1 domain containing 1##AJ007398|RSL1D1|26156|ribosomal L1 domain containing 1##BC019069|RSL1D1|26156|ribosomal L1 domain containing 1##AK000822|RSL1D1|26156|ribosomal L1 domain containing 1##BC009802|RSL1D1|26156|ribosomal L1 domain containing 1##BC017899|RSL1D1|26156|ribosomal L1 domain containing 1##BC107782|RSL1D1|26156|ribosomal L1 domain containing 1##BC070325|RSL1D1|26156|ribosomal L1 domain containing 1##AY154473|RSL1D1|26156|ribosomal L1 domain containing 1##BC112228|RSL1D1|26156|ribosomal L1 domain containing 1##BC113699|RSL1D1|26156|ribosomal L1 domain containing 1##BC016362|RSL1D1|26156|ribosomal L1 domain containing 1##AL049999|RSL1D1|26156|ribosomal L1 domain containing 1##AK295935|RSL1D1|26156|ribosomal L1 domain containing 1##NM_015659|RSL1D1|26156|ribosomal L1 domain containing 1##BC009503|GSPT1|2935|G1 to S phase transition 1##AK095483|GSPT1|2935|G1 to S phase transition 1	0.967373	denovo_WM_21:-56:0.967
chr10	70660877	70661003	reg1000989.p1	5.321	+	NM_001130162 AK124681	-73360	+	BC140011 NM_001130159 NM_001130160 NM_001130161 NM_152709 AY842014 AY842015 AY842016 AY842017	-73604	+	TSC_hg19_v1_chr10_+_70502264 AK000741	-158662	+	TSC_hg19_v1_chr10_+_70661066 BC000272 NM_024045 AK223297 AF334103 AK301431 AK293577 BC014263	84	+	TSC_hg19_v1_chr10_+_70661097 CU674120 DQ892547 DQ895758	177	+	BC104671 NM_004728 TSC_hg19_v1_chr10_+_70715925 BC009432 U41387 AK315585 BC008071 BC004182 BC017228 AB527408 CU675917	54992	+	NM_001130162|STOX1|219736|storkhead box 1##AK124681|STOX1|219736|storkhead box 1##BC140011|STOX1|219736|storkhead box 1##NM_001130159|STOX1|219736|storkhead box 1##NM_001130160|STOX1|219736|storkhead box 1##NM_001130161|STOX1|219736|storkhead box 1##NM_152709|STOX1|219736|storkhead box 1##AY842014|STOX1|219736|storkhead box 1##AY842015|STOX1|219736|storkhead box 1##AY842016|STOX1|219736|storkhead box 1##AY842017|STOX1|219736|storkhead box 1##AK000741|CCAR1|55749|cell division cycle and apoptosis regulator 1##BC000272|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##NM_024045|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##AK223297|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##AF334103|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##AK301431|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##AK293577|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##BC014263|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##DQ892547|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##DQ895758|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##BC104671|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##NM_004728|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC009432|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##U41387|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##AK315585|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC008071|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC004182|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC017228|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	0.747068	denovo_WM_21:0:0.703
chr3	42003599	42003718	reg1001060.p1	5.318	+	BC014794 TSC_hg19_v1_chr3_-_42003564 AK304341 AK000581 NM_017886	-99	-	AK296790 AK314776 X87838 TSC_hg19_v1_chr3_+_41240995 BC058926 Z19054 AK299954	-762634	+	TSC_hg19_v1_chr3_+_41240969 NM_001098209 NM_001098210 NM_001904 AK294778	-762709	+	AK295480 AB028965 NM_001042646 AK295848 AK316260 AB385421	129175	+	TSC_hg19_v1_chr3_+_42190749 AK294221	187090	+	AL713787 TSC_hg19_v1_chr3_+_42190865	187189	+	BC014794|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK304341|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK000581|ULK4|54986|unc-51-like kinase 4 (C. elegans)##NM_017886|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK296790|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK314776|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##X87838|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##BC058926|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##Z19054|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK299954|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##NM_001098209|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##NM_001098210|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##NM_001904|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK294778|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK295480|TRAK1|22906|trafficking protein, kinesin binding 1##AB028965|TRAK1|22906|trafficking protein, kinesin binding 1##NM_001042646|TRAK1|22906|trafficking protein, kinesin binding 1##AK295848|TRAK1|22906|trafficking protein, kinesin binding 1##AK316260|TRAK1|22906|trafficking protein, kinesin binding 1##AK294221|TRAK1|22906|trafficking protein, kinesin binding 1##AL713787|TRAK1|22906|trafficking protein, kinesin binding 1	0.0	
chrX	153570328	153570464	reg1001087.p1	5.302	+	NM_001145934	-36988	+	NM_001145933 NM_012253 AK301724 TSC_hg19_v1_chrX_+_153524147 AK292261 AK302044 BC025382 AK302261 AK292224 AB527362 AM392578 AM393533 CU692986	-46277	+	DQ655913 TSC_hg19_v1_chrX_-_153523933	-46531	-	TSC_hg19_v1_chrX_-_153599586 AB191259 AB371575 AB371577 AB371578 AB371579 AB191260 AB371574 AB371576 AB463042 AK090427	29219	-	TSC_hg19_v1_chrX_-_153599726 AB593010	29326	-	X53416 TSC_hg19_v1_chrX_-_153602972	32554	-	NM_001145934|TKTL1|8277|transketolase-like 1##NM_001145933|TKTL1|8277|transketolase-like 1##NM_012253|TKTL1|8277|transketolase-like 1##AK301724|TKTL1|8277|transketolase-like 1##AK292261|TKTL1|8277|transketolase-like 1##AK302044|TKTL1|8277|transketolase-like 1##BC025382|TKTL1|8277|transketolase-like 1##AK302261|TKTL1|8277|transketolase-like 1##AK292224|TKTL1|8277|transketolase-like 1##AM392578|TKTL1|8277|transketolase-like 1##AM393533|TKTL1|8277|transketolase-like 1##DQ655913|TEX28|1527|testis expressed 28##AB191259|FLNA|2316|filamin A, alpha##AB371575|FLNA|2316|filamin A, alpha##AB371577|FLNA|2316|filamin A, alpha##AB371578|FLNA|2316|filamin A, alpha##AB371579|FLNA|2316|filamin A, alpha##AB191260|FLNA|2316|filamin A, alpha##AB371574|FLNA|2316|filamin A, alpha##AB371576|FLNA|2316|filamin A, alpha##AK090427|FLNA|2316|filamin A, alpha##AB593010|FLNA|2316|filamin A, alpha##X53416|FLNA|2316|filamin A, alpha	0.031031	
chr1	161136110	161136245	reg1001091.p1	5.298	+	TSC_hg19_v1_chr1_+_161129289 BC090946 AK292319 AK310326 AF233442 AF217979 AF177758	-6832	+	TSC_hg19_v1_chr1_+_161129276 NM_001014443 NM_012475 AB208899	-6919	+	TSC_hg19_v1_chr1_+_161123772 AK311562 AB154405 DQ893161 DQ896457	-12406	+	NM_000309 NM_001122764 BC002357 D38537 U26446 AK094855 AK302298 AK298912	63	+	AK056851 AF038661 BC000276 AF020921 BC006099 TSC_hg19_v1_chr1_-_161147285 BC009985 AK291455 AK092493 AK023311	11090	-	NM_001199873 NM_001199874 NM_003779	11580	-	BC090946|USP21|27005|ubiquitin specific peptidase 21##AK292319|USP21|27005|ubiquitin specific peptidase 21##AK310326|USP21|27005|ubiquitin specific peptidase 21##AF233442|USP21|27005|ubiquitin specific peptidase 21##AF217979|USP21|27005|ubiquitin specific peptidase 21##AF177758|USP21|27005|ubiquitin specific peptidase 21##NM_001014443|USP21|27005|ubiquitin specific peptidase 21##NM_012475|USP21|27005|ubiquitin specific peptidase 21##AB208899|USP21|27005|ubiquitin specific peptidase 21##AB154405|UFC1|51506|ubiquitin-fold modifier conjugating enzyme 1##DQ893161|UFC1|51506|ubiquitin-fold modifier conjugating enzyme 1##DQ896457|UFC1|51506|ubiquitin-fold modifier conjugating enzyme 1##NM_000309|PPOX|5498|protoporphyrinogen oxidase##NM_001122764|PPOX|5498|protoporphyrinogen oxidase##BC002357|PPOX|5498|protoporphyrinogen oxidase##D38537|PPOX|5498|protoporphyrinogen oxidase##U26446|PPOX|5498|protoporphyrinogen oxidase##AK094855|PPOX|5498|protoporphyrinogen oxidase##AK302298|PPOX|5498|protoporphyrinogen oxidase##AK298912|PPOX|5498|protoporphyrinogen oxidase##AK056851|B4GALT3|8703|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3##AF038661|B4GALT3|8703|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3##BC000276|B4GALT3|8703|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3##BC006099|B4GALT3|8703|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3##BC009985|B4GALT3|8703|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3##AK291455|B4GALT3|8703|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3##AK092493|B4GALT3|8703|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3##AK023311|B4GALT3|8703|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3##NM_001199873|B4GALT3|8703|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3##NM_001199874|B4GALT3|8703|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3##NM_003779|B4GALT3|8703|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3	0.017442	
chr6	32146002	32146133	reg1000690.p1	5.298	+	BC002402 BC003007 TSC_hg19_v1_chr6_-_32145872 NM_032741	-203	-	TSC_hg19_v1_chr6_-_32143900 NM_006411	-2156	-	TSC_hg19_v1_chr6_-_32143886 U56417	-2178	-	NM_006913 TSC_hg19_v1_chr6_+_32146181 BC111392	118	+	TSC_hg19_v1_chr6_+_32146212 AK311221 BC127651 BC127652 BC148255 BC119741 BC119742 AK296212 AK311859 BC004155 AB463595 AB056869 BT007105	182	+	M91211 AB527569 CU676626 DQ893575 DQ896821 EU428811 EU428812 EU428813 EU428814 EU428815 EU428816 EU826616 EU826617 EU826618 EU826619 EU826620 AY755619 AY755620 AY755621 AY755622 AY755623 AY755624 AY755625 AY755626 AY755627 AY755628 DQ104251 DQ104252 DQ104253 DQ104254 EU117141 AJ133822 BC020669 FJ545655 HQ148135 GU139370 GU139371 GU139372 GU139373 GU139374 GU139375 GU139376 GU139377 GU139378 GU139379 GU139380 GU139381 GU139382 GU139383 GU139384 AB036432 AB061668 AB061669 HQ148133 HQ148134 AK313178 AK298100 NM_001136 NM_001206929 NM_001206932 NM_001206934 NM_001206936 NM_001206940 NM_001206954 NM_001206966 NM_172197	5980	-	BC002402|AGPAT1|10554|1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)##BC003007|AGPAT1|10554|1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)##NM_032741|AGPAT1|10554|1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)##NM_006411|AGPAT1|10554|1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)##U56417|AGPAT1|10554|1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)##NM_006913|RNF5|6048|ring finger protein 5##BC111392|RNF5|6048|ring finger protein 5##BC127651|RNF5|6048|ring finger protein 5##BC127652|RNF5|6048|ring finger protein 5##BC148255|RNF5|6048|ring finger protein 5##BC119741|RNF5|6048|ring finger protein 5##BC119742|RNF5|6048|ring finger protein 5##AK296212|RNF5|6048|ring finger protein 5##AK311859|RNF5|6048|ring finger protein 5##BC004155|RNF5|6048|ring finger protein 5##AB056869|RNF5|6048|ring finger protein 5##BT007105|RNF5|6048|ring finger protein 5##M91211|AGER|177|advanced glycosylation end product-specific receptor##DQ893575|AGER|177|advanced glycosylation end product-specific receptor##DQ896821|AGER|177|advanced glycosylation end product-specific receptor##EU428811|AGER|177|advanced glycosylation end product-specific receptor##EU428812|AGER|177|advanced glycosylation end product-specific receptor##EU428813|AGER|177|advanced glycosylation end product-specific receptor##EU428814|AGER|177|advanced glycosylation end product-specific receptor##EU428815|AGER|177|advanced glycosylation end product-specific receptor##EU428816|AGER|177|advanced glycosylation end product-specific receptor##EU826616|AGER|177|advanced glycosylation end product-specific receptor##EU826617|AGER|177|advanced glycosylation end product-specific receptor##EU826618|AGER|177|advanced glycosylation end product-specific receptor##EU826619|AGER|177|advanced glycosylation end product-specific receptor##EU826620|AGER|177|advanced glycosylation end product-specific receptor##AY755619|AGER|177|advanced glycosylation end product-specific receptor##AY755620|AGER|177|advanced glycosylation end product-specific receptor##AY755621|AGER|177|advanced glycosylation end product-specific receptor##AY755622|AGER|177|advanced glycosylation end product-specific receptor##AY755623|AGER|177|advanced glycosylation end product-specific receptor##AY755624|AGER|177|advanced glycosylation end product-specific receptor##AY755625|AGER|177|advanced glycosylation end product-specific receptor##AY755626|AGER|177|advanced glycosylation end product-specific receptor##AY755627|AGER|177|advanced glycosylation end product-specific receptor##AY755628|AGER|177|advanced glycosylation end product-specific receptor##DQ104251|AGER|177|advanced glycosylation end product-specific receptor##DQ104252|AGER|177|advanced glycosylation end product-specific receptor##DQ104253|AGER|177|advanced glycosylation end product-specific receptor##DQ104254|AGER|177|advanced glycosylation end product-specific receptor##EU117141|AGER|177|advanced glycosylation end product-specific receptor##AJ133822|AGER|177|advanced glycosylation end product-specific receptor##BC020669|AGER|177|advanced glycosylation end product-specific receptor##FJ545655|AGER|177|advanced glycosylation end product-specific receptor##HQ148135|AGER|177|advanced glycosylation end product-specific receptor##GU139370|AGER|177|advanced glycosylation end product-specific receptor##GU139371|AGER|177|advanced glycosylation end product-specific receptor##GU139372|AGER|177|advanced glycosylation end product-specific receptor##GU139373|AGER|177|advanced glycosylation end product-specific receptor##GU139374|AGER|177|advanced glycosylation end product-specific receptor##GU139375|AGER|177|advanced glycosylation end product-specific receptor##GU139376|AGER|177|advanced glycosylation end product-specific receptor##GU139377|AGER|177|advanced glycosylation end product-specific receptor##GU139378|AGER|177|advanced glycosylation end product-specific receptor##GU139379|AGER|177|advanced glycosylation end product-specific receptor##GU139381|AGER|177|advanced glycosylation end product-specific receptor##GU139382|AGER|177|advanced glycosylation end product-specific receptor##AB036432|AGER|177|advanced glycosylation end product-specific receptor##AB061668|AGER|177|advanced glycosylation end product-specific receptor##AB061669|AGER|177|advanced glycosylation end product-specific receptor##HQ148133|AGER|177|advanced glycosylation end product-specific receptor##HQ148134|AGER|177|advanced glycosylation end product-specific receptor##AK313178|AGER|177|advanced glycosylation end product-specific receptor##AK298100|AGER|177|advanced glycosylation end product-specific receptor##NM_001136|AGER|177|advanced glycosylation end product-specific receptor##NM_001206929|AGER|177|advanced glycosylation end product-specific receptor##NM_001206932|AGER|177|advanced glycosylation end product-specific receptor##NM_001206934|AGER|177|advanced glycosylation end product-specific receptor##NM_001206936|AGER|177|advanced glycosylation end product-specific receptor##NM_001206940|AGER|177|advanced glycosylation end product-specific receptor##NM_001206954|AGER|177|advanced glycosylation end product-specific receptor##NM_001206966|AGER|177|advanced glycosylation end product-specific receptor##NM_172197|AGER|177|advanced glycosylation end product-specific receptor	0.391695	denovo_WM_21:-7:0.373
chr2	46926156	46926226	reg1000825.p2	5.292	+	TSC_hg19_v1_chr2_+_46926049 AK290194 AK296796 AB014571 AL136896 NM_014011	-118	+	TSC_hg19_v1_chr2_+_46844353 NM_014171 AK291298 AF161488 BC018653 BC006980 BC006979	-81838	+	TSC_hg19_v1_chr2_-_46844187 BC021725 BC029408 AK291108 NM_002643 NM_173074	-81974	-	TSC_hg19_v1_chr2_+_46926340 BC032862 AF073958 NM_144949	210	+	TSC_hg19_v1_chr2_-_47134945 M23161	208820	-	TSC_hg19_v1_chr2_-_47142893 AF475284 BC037845	216700	-	AK290194|SOCS5|9655|suppressor of cytokine signaling 5##AB014571|SOCS5|9655|suppressor of cytokine signaling 5##AL136896|SOCS5|9655|suppressor of cytokine signaling 5##NM_014011|SOCS5|9655|suppressor of cytokine signaling 5##NM_014171|CRIPT|9419|cysteine-rich PDZ-binding protein##AK291298|CRIPT|9419|cysteine-rich PDZ-binding protein##AF161488|CRIPT|9419|cysteine-rich PDZ-binding protein##BC018653|CRIPT|9419|cysteine-rich PDZ-binding protein##BC006980|CRIPT|9419|cysteine-rich PDZ-binding protein##BC006979|CRIPT|9419|cysteine-rich PDZ-binding protein##BC021725|PIGF|5281|phosphatidylinositol glycan anchor biosynthesis, class F##BC029408|PIGF|5281|phosphatidylinositol glycan anchor biosynthesis, class F##AK291108|PIGF|5281|phosphatidylinositol glycan anchor biosynthesis, class F##NM_002643|PIGF|5281|phosphatidylinositol glycan anchor biosynthesis, class F##NM_173074|PIGF|5281|phosphatidylinositol glycan anchor biosynthesis, class F##BC032862|SOCS5|9655|suppressor of cytokine signaling 5##AF073958|SOCS5|9655|suppressor of cytokine signaling 5##NM_144949|SOCS5|9655|suppressor of cytokine signaling 5##M23161|MCFD2|90411|multiple coagulation factor deficiency 2##AF475284|MCFD2|90411|multiple coagulation factor deficiency 2##BC037845|MCFD2|90411|multiple coagulation factor deficiency 2	0.666473	denovo_WM_21:50:0.560
chr5	44808864	44809013	reg1001025.p1	5.290	+	AF508782 AB002097 AF411527 BC069561 CR541665 CR541688 GQ351295 HQ258011 NM_004465 U67918 BC105023 BC105021 BC143772	-420173	-	Z50101 AB385177 AM392664 AM393615 TSC_hg19_v1_chr5_+_43609371	-1199622	+	TSC_hg19_v1_chr5_+_43603313 BC110543 BC110544	-1205584	+	TSC_hg19_v1_chr5_+_44809056 AF146192 AL355715 NM_016640 AK222704 BC007735 AK222894 AL136706 AK074777 CU675783 BC002460	89	+	AF064876 TSC_hg19_v1_chr5_-_45695947	886953	-	AF488549 NM_021072	887281	-	AF508782|FGF10|2255|fibroblast growth factor 10##AB002097|FGF10|2255|fibroblast growth factor 10##AF411527|FGF10|2255|fibroblast growth factor 10##BC069561|FGF10|2255|fibroblast growth factor 10##CR541665|FGF10|2255|fibroblast growth factor 10##CR541688|FGF10|2255|fibroblast growth factor 10##GQ351295|FGF10|2255|fibroblast growth factor 10##HQ258011|FGF10|2255|fibroblast growth factor 10##NM_004465|FGF10|2255|fibroblast growth factor 10##U67918|FGF10|2255|fibroblast growth factor 10##BC105023|FGF10|2255|fibroblast growth factor 10##BC105021|FGF10|2255|fibroblast growth factor 10##Z50101|NNT|23530|nicotinamide nucleotide transhydrogenase##AM392664|NNT|23530|nicotinamide nucleotide transhydrogenase##AM393615|NNT|23530|nicotinamide nucleotide transhydrogenase##BC110543|NNT|23530|nicotinamide nucleotide transhydrogenase##BC110544|NNT|23530|nicotinamide nucleotide transhydrogenase##AF146192|MRPS30|10884|mitochondrial ribosomal protein S30##AL355715|MRPS30|10884|mitochondrial ribosomal protein S30##NM_016640|MRPS30|10884|mitochondrial ribosomal protein S30##AK222704|MRPS30|10884|mitochondrial ribosomal protein S30##BC007735|MRPS30|10884|mitochondrial ribosomal protein S30##AK222894|MRPS30|10884|mitochondrial ribosomal protein S30##AL136706|MRPS30|10884|mitochondrial ribosomal protein S30##AK074777|MRPS30|10884|mitochondrial ribosomal protein S30##BC002460|MRPS30|10884|mitochondrial ribosomal protein S30##AF064876|HCN1|348980|hyperpolarization activated cyclic nucleotide-gated potassium channel 1##AF488549|HCN1|348980|hyperpolarization activated cyclic nucleotide-gated potassium channel 1##NM_021072|HCN1|348980|hyperpolarization activated cyclic nucleotide-gated potassium channel 1	1.1427	denovo_WM_21:56:0.949
chr19	50372950	50373046	reg1000495.p2	5.288	+	AF120499 BC033822 TSC_hg19_v1_chr19_-_50370821 NM_007254	-2176	-	TSC_hg19_v1_chr19_-_50354936 BC043359	-18061	-	TSC_hg19_v1_chr19_+_50354438 AJ617480 BC042921 U79287	-18468	+	TSC_hg19_v1_chr19_-_50379904 AK316603	6896	-	BC016043 BC007416 AK226004 BC051844 TSC_hg19_v1_chr19_-_50380601 BC015562 NM_032375 AK123687 NM_001098633 NM_001098632	7549	-	NM_001168222 NM_024682 TSC_hg19_v1_chr19_+_50380945 BC003516 AK022230 AK300007 AK309412 AB449903 AB590884 CU678472	7851	+	AF120499|PNKP|11284|polynucleotide kinase 3'-phosphatase##BC033822|PNKP|11284|polynucleotide kinase 3'-phosphatase##NM_007254|PNKP|11284|polynucleotide kinase 3'-phosphatase##BC043359|LOC100506033|100506033|uncharacterized LOC100506033##AJ617480|PTOV1|53635|prostate tumor overexpressed 1##BC042921|PTOV1|53635|prostate tumor overexpressed 1##U79287|PTOV1|53635|prostate tumor overexpressed 1##AK316603|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##BC016043|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##BC007416|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##AK226004|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##BC051844|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##BC015562|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##NM_032375|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##AK123687|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##NM_001098633|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##NM_001098632|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##NM_001168222|TBC1D17|79735|TBC1 domain family, member 17##NM_024682|TBC1D17|79735|TBC1 domain family, member 17##BC003516|TBC1D17|79735|TBC1 domain family, member 17##AK022230|TBC1D17|79735|TBC1 domain family, member 17##AK300007|TBC1D17|79735|TBC1 domain family, member 17##AK309412|TBC1D17|79735|TBC1 domain family, member 17##AB449903|TBC1D17|79735|TBC1 domain family, member 17	0.026032	
chr11	54833620	54833729	reg1000930.p1	5.285	+	NM_001004703	-3318393	+	BC140750 NM_001005272	-3421227	-	BC136850 BC136851 NM_001005270	-4829604	-	AF521869 BC001862 NM_024114	195983	+	BC140748 NM_001005274	276977	+	NM_001005275	301685	+	NM_001004703|OR4C46|119749|olfactory receptor, family 4, subfamily C, member 46##BC140750|OR4A5|81318|olfactory receptor, family 4, subfamily A, member 5##NM_001005272|OR4A5|81318|olfactory receptor, family 4, subfamily A, member 5##BC136850|OR4C12|283093|olfactory receptor, family 4, subfamily C, member 12##BC136851|OR4C12|283093|olfactory receptor, family 4, subfamily C, member 12##NM_001005270|OR4C12|283093|olfactory receptor, family 4, subfamily C, member 12##AF521869|TRIM48|79097|tripartite motif containing 48##BC001862|TRIM48|79097|tripartite motif containing 48##NM_024114|TRIM48|79097|tripartite motif containing 48##BC140748|OR4A16|81327|olfactory receptor, family 4, subfamily A, member 16##NM_001005274|OR4A16|81327|olfactory receptor, family 4, subfamily A, member 16##NM_001005275|OR4A15|81328|olfactory receptor, family 4, subfamily A, member 15	0.0	
chr17	46048326	46048437	reg1000894.p2	5.274	+	BC002865 NM_024320 TSC_hg19_v1_chr17_-_46035208 AK309589	-13199	-	TSC_hg19_v1_chr17_+_46019041 AF468030	-29335	+	NM_018129 TSC_hg19_v1_chr17_+_46018965 AK001397 AK303665 AK303792 AK223242 AK303536 BC006525	-29437	+	AK223387 NM_176096 TSC_hg19_v1_chr17_+_46048452	51	+	TSC_hg19_v1_chr17_+_46048471 AF217982 AK023722	88	+	AF343090 TSC_hg19_v1_chr17_+_46048487 AF110322 AK225274 BC072435 AB062433 BC009957	113	+	BC002865|PRR15L|79170|proline rich 15-like##NM_024320|PRR15L|79170|proline rich 15-like##AK309589|PRR15L|79170|proline rich 15-like##AF468030|PNPO|55163|pyridoxamine 5'-phosphate oxidase##NM_018129|PNPO|55163|pyridoxamine 5'-phosphate oxidase##AK001397|PNPO|55163|pyridoxamine 5'-phosphate oxidase##AK303665|PNPO|55163|pyridoxamine 5'-phosphate oxidase##AK303792|PNPO|55163|pyridoxamine 5'-phosphate oxidase##AK223242|PNPO|55163|pyridoxamine 5'-phosphate oxidase##AK303536|PNPO|55163|pyridoxamine 5'-phosphate oxidase##BC006525|PNPO|55163|pyridoxamine 5'-phosphate oxidase##AK223387|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##NM_176096|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##AF217982|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##AK023722|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##AF343090|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##AF110322|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##AK225274|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##BC072435|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##AB062433|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##BC009957|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3	1.728067	denovo_WM_21:-5:0.951	denovo_WM_21:-98:0.657
chr9	34646529	34646661	reg1000885.p1	5.269	+	TSC_hg19_v1_chr9_-_34637804 AK130502	-8794	-	TSC_hg19_v1_chr9_-_34637753 AY633611 NM_005866 NM_147157 U79528 BC006307	-8827	-	TSC_hg19_v1_chr9_-_34637743 AF226604 CR457075 DQ644568 DQ647702 DQ656583 DQ892881 DQ896130 AK098451 BC004899 BC010104 BC007839 U75283 AK299130 AK222899 AK291092	-8908	-	TSC_hg19_v1_chr9_+_34646607 AK314340	8	+	TSC_hg19_v1_chr9_+_34646631 AK303279 NM_000155 AK293212 BC015045 AK096026 AK096137 AK310049 M60091 CU677195 BT009852 AK300070	103	+	TSC_hg19_v1_chr9_+_34652201 NM_001142784	5569	+	AK130502|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##AY633611|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##NM_005866|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##NM_147157|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##U79528|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##BC006307|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##AF226604|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##CR457075|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##DQ644568|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##DQ647702|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##DQ656583|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##DQ892881|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##DQ896130|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##AK098451|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##BC004899|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##BC010104|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##BC007839|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##U75283|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##AK299130|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##AK222899|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##AK291092|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##AK314340|GALT|2592|galactose-1-phosphate uridylyltransferase##AK303279|GALT|2592|galactose-1-phosphate uridylyltransferase##NM_000155|GALT|2592|galactose-1-phosphate uridylyltransferase##AK293212|GALT|2592|galactose-1-phosphate uridylyltransferase##BC015045|GALT|2592|galactose-1-phosphate uridylyltransferase##AK096026|GALT|2592|galactose-1-phosphate uridylyltransferase##AK096137|GALT|2592|galactose-1-phosphate uridylyltransferase##AK310049|GALT|2592|galactose-1-phosphate uridylyltransferase##M60091|GALT|2592|galactose-1-phosphate uridylyltransferase##BT009852|GALT|2592|galactose-1-phosphate uridylyltransferase##AK300070|GALT|2592|galactose-1-phosphate uridylyltransferase##NM_001142784|IL11RA|3590|interleukin 11 receptor, alpha	0.205293	denovo_WM_21:11:0.205
chr11	585422	585597	reg1000640.p2	5.263	+	NM_020901 TSC_hg19_v1_chr11_+_576482 AB040975 BC146771 AK308541 BC136615 BC144293 BC144294 BC144295 BC112931	-9004	+	TSC_hg19_v1_chr11_-_575850 AK057794 AK123970	-9643	-	AK123483 TSC_hg19_v1_chr11_-_568468	-17065	-	AF076494 NM_004031	30179	-	U53830 U53831 U53832 U73036 TSC_hg19_v1_chr11_-_615951 AK303752	30427	-	NM_001572 NM_004029 TSC_hg19_v1_chr11_-_616001	30492	-	NM_020901|PHRF1|57661|PHD and ring finger domains 1##AB040975|PHRF1|57661|PHD and ring finger domains 1##BC146771|PHRF1|57661|PHD and ring finger domains 1##AK308541|PHRF1|57661|PHD and ring finger domains 1##BC136615|PHRF1|57661|PHD and ring finger domains 1##BC144293|PHRF1|57661|PHD and ring finger domains 1##BC144294|PHRF1|57661|PHD and ring finger domains 1##BC144295|PHRF1|57661|PHD and ring finger domains 1##BC112931|PHRF1|57661|PHD and ring finger domains 1##AK057794|LOC143666|143666|uncharacterized LOC143666##AK123970|LOC143666|143666|uncharacterized LOC143666##AK123483|MIR210HG|100506211|MIR210 host gene (non-protein coding)##AF076494|IRF7|3665|interferon regulatory factor 7##NM_004031|IRF7|3665|interferon regulatory factor 7##U53830|IRF7|3665|interferon regulatory factor 7##U53831|IRF7|3665|interferon regulatory factor 7##U53832|IRF7|3665|interferon regulatory factor 7##U73036|IRF7|3665|interferon regulatory factor 7##AK303752|IRF7|3665|interferon regulatory factor 7##NM_001572|IRF7|3665|interferon regulatory factor 7##NM_004029|IRF7|3665|interferon regulatory factor 7	0.0	
chr2	134877467	134877619	reg1000891.p2	5.262	+	AK057980 NM_207363 NM_207481 TSC_hg19_v1_chr2_-_134326043	-551505	-	TSC_hg19_v1_chr2_-_134179377 AK092189 AX747399	-698189	-	AK124659 TSC_hg19_v1_chr2_-_133539761	-1337849	-	NM_002410 D17716 AF113921	134342	+	TSC_hg19_v1_chr2_-_135476571 BC026170 NM_030923	599013	-	AK125008 NM_138326 BC016018 BC107420 AB071418	718675	+	AK057980|NCKAP5|344148|NCK-associated protein 5##NM_207363|NCKAP5|344148|NCK-associated protein 5##NM_207481|NCKAP5|344148|NCK-associated protein 5##AK092189|NCKAP5|344148|NCK-associated protein 5##AK124659|NCKAP5|344148|NCK-associated protein 5##NM_002410|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##D17716|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##AF113921|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##BC026170|TMEM163|81615|transmembrane protein 163##NM_030923|TMEM163|81615|transmembrane protein 163##AK125008|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##NM_138326|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##BC016018|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##BC107420|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##AB071418|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase	0.0	
chr17	57410336	57410472	reg1000970.p1	5.260	+	TSC_hg19_v1_chr17_+_57409043 NM_001005404 BC132884 BC132886 AK097253 AB098736	-1386	+	NM_001165993 NM_001165994 NM_182569 AK094770 AY271346 BC034432 EU192951	-112506	+	AF349467 NM_018149 TSC_hg19_v1_chr17_+_57287384 AL834490 AK026858 BC031604	-123007	+	AF461690 NM_001166301 NM_024612 TSC_hg19_v1_chr17_+_57642970 BC024187 AK299151 AK095681 AF260270 AK226048 AB384723 DQ890909 DQ894060	232583	+	TSC_hg19_v1_chr17_+_57697037 NM_004859	286641	+	TSC_hg19_v1_chr17_+_57697265 BC054489 BX640615	286866	+	NM_001005404|YPEL2|388403|yippee-like 2 (Drosophila)##BC132884|YPEL2|388403|yippee-like 2 (Drosophila)##BC132886|YPEL2|388403|yippee-like 2 (Drosophila)##AK097253|YPEL2|388403|yippee-like 2 (Drosophila)##AB098736|YPEL2|388403|yippee-like 2 (Drosophila)##NM_001165993|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##NM_001165994|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##NM_182569|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##AK094770|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##AY271346|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##BC034432|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##EU192951|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##AF349467|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_018149|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##AL834490|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK026858|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##BC031604|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##AF461690|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##NM_001166301|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##NM_024612|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##BC024187|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AK299151|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AK095681|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AF260270|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AK226048|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##DQ890909|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##DQ894060|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##NM_004859|CLTC|1213|clathrin, heavy chain (Hc)##BC054489|CLTC|1213|clathrin, heavy chain (Hc)##BX640615|CLTC|1213|clathrin, heavy chain (Hc)	0.0	
chr2	74425477	74425609	reg1000831.p1	5.260	+	AJ577474 CU678456 TSC_hg19_v1_chr2_-_74406014 AB016839 AK023321 AK001650 BC003398 NM_018221 AK021657	-19636	-	AL122062 TSC_hg19_v1_chr2_-_74382411	-43162	-	BC030102 AK123453 BC008757 TSC_hg19_v1_chr2_+_74375241 BC007916 BC015635	-50323	+	AK057260 TSC_hg19_v1_chr2_-_74425749	172	-	NM_006636 TSC_hg19_v1_chr2_+_74425741 AK300035 AK130664 AK222826 AK223041 AK302245 AK313138 BC015062 BC001548 BC017054 AB529041 X16396 DQ894679	194	+	AF243499 AF293338 NM_021196	116607	-	AJ577474|MOB1A|55233|MOB kinase activator 1A##AB016839|MOB1A|55233|MOB kinase activator 1A##AK023321|MOB1A|55233|MOB kinase activator 1A##AK001650|MOB1A|55233|MOB kinase activator 1A##BC003398|MOB1A|55233|MOB kinase activator 1A##NM_018221|MOB1A|55233|MOB kinase activator 1A##AK021657|MOB1A|55233|MOB kinase activator 1A##BC030102|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##AK123453|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC008757|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC007916|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC015635|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##NM_006636|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK300035|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK130664|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK222826|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK223041|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK302245|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK313138|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##BC015062|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##BC001548|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##BC017054|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##X16396|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##DQ894679|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AF243499|SLC4A5|57835|solute carrier family 4, sodium bicarbonate cotransporter, member 5##AF293338|SLC4A5|57835|solute carrier family 4, sodium bicarbonate cotransporter, member 5##NM_021196|SLC4A5|57835|solute carrier family 4, sodium bicarbonate cotransporter, member 5	0.129212	
chr12	50135184	50135301	reg1000783.p2	5.258	+	TSC_hg19_v1_chr12_-_50101206 AB095934 BC159100 NM_175736 NM_198900	-34030	-	TSC_hg19_v1_chr12_-_50101189 AK128195	-34084	-	AB384661 TSC_hg19_v1_chr12_-_50101046	-34232	-	NM_003217 TSC_hg19_v1_chr12_+_50135339 AK130050 AK225804 AK299587 AK304577	76	+	TSC_hg19_v1_chr12_+_50135353 AK312238 BC000916 AF033095	116	+	NM_001098576 AK124849	350	+	AB095934|FMNL3|91010|formin-like 3##BC159100|FMNL3|91010|formin-like 3##NM_175736|FMNL3|91010|formin-like 3##NM_198900|FMNL3|91010|formin-like 3##AK128195|FMNL3|91010|formin-like 3##NM_003217|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6##AK130050|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6##AK225804|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6##AK299587|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6##AK304577|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6##AK312238|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6##BC000916|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6##AF033095|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6##NM_001098576|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6##AK124849|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6	1.647604	denovo_WM_21:8:0.809	denovo_WM_21:-21:0.839
chr14	105219372	105219468	reg1000843.p1	5.252	+	BC032039 NM_199165 AK096720	-23193	+	BC047904 NM_152328 AK095921 AY037159 TSC_hg19_v1_chr14_+_105190565 BX248286 CU690530	-28851	+	TSC_hg19_v1_chr14_+_105173955 DQ395338 DQ395339 DQ395340	-45323	+	TSC_hg19_v1_chr14_+_105219483 NM_006427 NM_021709 AK223332 AK316550 BC034562	68	+	TSC_hg19_v1_chr14_+_105219517 AK300415 CU689916 AK128704 AK316457	112	+	BX648205 NM_005163	40517	-	BC032039|ADSSL1|122622|adenylosuccinate synthase like 1##NM_199165|ADSSL1|122622|adenylosuccinate synthase like 1##AK096720|ADSSL1|122622|adenylosuccinate synthase like 1##BC047904|ADSSL1|122622|adenylosuccinate synthase like 1##NM_152328|ADSSL1|122622|adenylosuccinate synthase like 1##AK095921|ADSSL1|122622|adenylosuccinate synthase like 1##AY037159|ADSSL1|122622|adenylosuccinate synthase like 1##BX248286|ADSSL1|122622|adenylosuccinate synthase like 1##DQ395338|INF2|64423|inverted formin, FH2 and WH2 domain containing##DQ395339|INF2|64423|inverted formin, FH2 and WH2 domain containing##DQ395340|INF2|64423|inverted formin, FH2 and WH2 domain containing##NM_006427|SIVA1|10572|SIVA1, apoptosis-inducing factor##NM_021709|SIVA1|10572|SIVA1, apoptosis-inducing factor##AK223332|SIVA1|10572|SIVA1, apoptosis-inducing factor##AK316550|SIVA1|10572|SIVA1, apoptosis-inducing factor##BC034562|SIVA1|10572|SIVA1, apoptosis-inducing factor##AK300415|SIVA1|10572|SIVA1, apoptosis-inducing factor##BX648205|AKT1|207|v-akt murine thymoma viral oncogene homolog 1##NM_005163|AKT1|207|v-akt murine thymoma viral oncogene homolog 1	0.0	
chr7	1199838	1199955	reg1000900.p2	5.252	+	TSC_hg19_v1_chr7_-_1199853 NM_182491	-57	-	AK290170 TSC_hg19_v1_chr7_-_1199815	-82	-	BC016963 TSC_hg19_v1_chr7_-_1199799 AK027118 BC029558	-98	-	TSC_hg19_v1_chr7_+_1200097 AK090593	217	+	TSC_hg19_v1_chr7_+_1272552 NM_001080461	72706	+	CU691530 EU832111 EU832205 AK074068 BC037988 TSC_hg19_v1_chr7_-_1499102	299137	-	NM_182491|ZFAND2A|90637|zinc finger, AN1-type domain 2A##AK290170|ZFAND2A|90637|zinc finger, AN1-type domain 2A##BC016963|ZFAND2A|90637|zinc finger, AN1-type domain 2A##AK027118|ZFAND2A|90637|zinc finger, AN1-type domain 2A##BC029558|ZFAND2A|90637|zinc finger, AN1-type domain 2A##NM_001080461|UNCX|340260|UNC homeobox##EU832111|MICALL2|79778|MICAL-like 2##EU832205|MICALL2|79778|MICAL-like 2##AK074068|MICALL2|79778|MICAL-like 2##BC037988|MICALL2|79778|MICAL-like 2	0.0	
chr19	13858545	13858657	reg1000932.p1	5.248	+	TSC_hg19_v1_chr19_+_13842573 AK293927 BC047520	-16022	+	AB035727 FJ040507 TSC_hg19_v1_chr19_-_13617280 AB035726 U79666 AF004883 AF004884 NM_000068 NM_001127221 NM_001127222 NM_001174080 NM_023035 X99897	-241425	-	TSC_hg19_v1_chr19_+_13264358 BC003625 M62831 AB464589 DQ892292 DQ895492 BT019466 CR450352	-594421	+	TSC_hg19_v1_chr19_+_13858736 AK098262 AF250306 BC002905 NM_030818	118	+	TSC_hg19_v1_chr19_+_13875323 NM_001031727 NM_032285	16719	+	AL834276 TSC_hg19_v1_chr19_+_13875350	16746	+	AK293927|CCDC130|81576|coiled-coil domain containing 130##AB035727|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##FJ040507|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AB035726|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##U79666|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AF004883|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AF004884|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_000068|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001127221|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001127222|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001174080|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_023035|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##X99897|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##BC003625|IER2|9592|immediate early response 2##M62831|IER2|9592|immediate early response 2##DQ892292|IER2|9592|immediate early response 2##DQ895492|IER2|9592|immediate early response 2##BT019466|IER2|9592|immediate early response 2##CR450352|IER2|9592|immediate early response 2##AK098262|CCDC130|81576|coiled-coil domain containing 130##AF250306|CCDC130|81576|coiled-coil domain containing 130##BC002905|CCDC130|81576|coiled-coil domain containing 130##NM_030818|CCDC130|81576|coiled-coil domain containing 130##NM_001031727|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##NM_032285|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##AL834276|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)	0.989497	denovo_WM_21:37:0.966
chr17	73390005	73390116	reg1001146.p1	5.237	+	AB385058 AF498925 CR450363 CR541942 DQ891830 DQ894923 CU674310 L29511 TSC_hg19_v1_chr17_-_73389844	-283	-	TSC_hg19_v1_chr17_-_73285501 AK075239 NM_001126121 NM_001126122 NM_021734	-104531	-	BC001075 BC005120 TSC_hg19_v1_chr17_-_73285471 AL833387	-104588	-	AK091010 TSC_hg19_v1_chr17_-_73401721	11584	-	TSC_hg19_v1_chr17_-_73401738 BC000631	11674	-	TSC_hg19_v1_chr17_-_73401781 AK315565	11719	-	AF498925|GRB2|2885|growth factor receptor-bound protein 2##CR450363|GRB2|2885|growth factor receptor-bound protein 2##CR541942|GRB2|2885|growth factor receptor-bound protein 2##DQ891830|GRB2|2885|growth factor receptor-bound protein 2##DQ894923|GRB2|2885|growth factor receptor-bound protein 2##L29511|GRB2|2885|growth factor receptor-bound protein 2##AK075239|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_001126121|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_001126122|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_021734|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##BC001075|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##BC005120|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##AL833387|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##AK091010|GRB2|2885|growth factor receptor-bound protein 2##BC000631|GRB2|2885|growth factor receptor-bound protein 2##AK315565|GRB2|2885|growth factor receptor-bound protein 2	0.0	
chr19	2375552	2375729	reg1001393.p1	5.235	+	TSC_hg19_v1_chr19_+_2328689 AJ345027 BC001788 BC028391	-46950	+	AB040965 AJ420897 TSC_hg19_v1_chr19_+_2328682 AY169315 AK308973	-46960	+	BC093046 NM_001077238 NM_152988 TSC_hg19_v1_chr19_+_2328668	-46990	+	AB109390 AB527446 AJ488946 AJ488947 NM_182973	14135	+	AF152352 DQ891755 DQ894937 TSC_hg19_v1_chr19_-_2427552 AK024764 AF144700 BC008607	51913	-	NM_012458 TSC_hg19_v1_chr19_-_2427893	52256	-	AJ345027|SPPL2B|56928|signal peptide peptidase-like 2B##BC001788|SPPL2B|56928|signal peptide peptidase-like 2B##BC028391|SPPL2B|56928|signal peptide peptidase-like 2B##AB040965|SPPL2B|56928|signal peptide peptidase-like 2B##AJ420897|SPPL2B|56928|signal peptide peptidase-like 2B##AY169315|SPPL2B|56928|signal peptide peptidase-like 2B##BC093046|SPPL2B|56928|signal peptide peptidase-like 2B##NM_001077238|SPPL2B|56928|signal peptide peptidase-like 2B##NM_152988|SPPL2B|56928|signal peptide peptidase-like 2B##AB109390|TMPRSS9|360200|transmembrane protease, serine 9##AJ488946|TMPRSS9|360200|transmembrane protease, serine 9##AJ488947|TMPRSS9|360200|transmembrane protease, serine 9##NM_182973|TMPRSS9|360200|transmembrane protease, serine 9##AF152352|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##DQ891755|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##DQ894937|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##AK024764|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##AF144700|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##BC008607|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##NM_012458|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)	0.739554	denovo_WM_21:-45:0.223	denovo_WM_21:-107:0.223
chr5	126366291	126366424	reg1000962.p1	5.231	+	BC146948 BC146964 AF055007 TSC_hg19_v1_chr5_-_126366251 BC047569 AK290129	-182	-	TSC_hg19_v1_chr5_+_126113050 AB527547 DQ891592 EU176582 CU680274	-253233	+	TSC_hg19_v1_chr5_+_126112878 AK312603 M34458 BC012295 BC078178	-253475	+	NM_178450	82	-	AK126569 NM_001164478 NM_001164479	42820	-	NM_032446 CR749437 AK307919 BC020198 AB058676 BC152478	260177	+	BC146948|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##BC146964|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##AF055007|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##BC047569|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##AK290129|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##DQ891592|LMNB1|4001|lamin B1##EU176582|LMNB1|4001|lamin B1##AK312603|LMNB1|4001|lamin B1##M34458|LMNB1|4001|lamin B1##BC012295|LMNB1|4001|lamin B1##BC078178|LMNB1|4001|lamin B1##NM_178450|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##AK126569|C5orf63|401207|chromosome 5 open reading frame 63##NM_001164478|C5orf63|401207|chromosome 5 open reading frame 63##NM_001164479|C5orf63|401207|chromosome 5 open reading frame 63##NM_032446|MEGF10|84466|multiple EGF-like-domains 10##CR749437|MEGF10|84466|multiple EGF-like-domains 10##AK307919|MEGF10|84466|multiple EGF-like-domains 10##BC020198|MEGF10|84466|multiple EGF-like-domains 10##AB058676|MEGF10|84466|multiple EGF-like-domains 10##BC152478|MEGF10|84466|multiple EGF-like-domains 10	0.0	
chr16	72042577	72042690	reg1000761.p2	5.230	+	AK292293 TSC_hg19_v1_chr16_+_72042642 NM_001361 BC065245	-39	+	AY164485 NM_181536	-8757	-	TSC_hg19_v1_chr16_+_71929438 AK295066 AK301918 AK057902 AK293022 AK297088 AB097052 D79996 BC000430 BC004359 NM_014761 BC000116	-113190	+	NM_001126102 NM_005143 AK314700 BC107587 AK055872 BC017862 BC058031 BC070299 K01763 L29394 BC121124 BC121125 X00637 K00422	45890	+	NM_020995	54491	+	AK308891 BC009646 TSC_hg19_v1_chr16_-_72127507 AK222889 AK000518 NM_017853	84878	-	AK292293|DHODH|1723|dihydroorotate dehydrogenase (quinone)##NM_001361|DHODH|1723|dihydroorotate dehydrogenase (quinone)##BC065245|DHODH|1723|dihydroorotate dehydrogenase (quinone)##AY164485|PKD1L3|342372|polycystic kidney disease 1-like 3##NM_181536|PKD1L3|342372|polycystic kidney disease 1-like 3##AK295066|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK301918|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK057902|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK293022|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK297088|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AB097052|IST1|9798|increased sodium tolerance 1 homolog (yeast)##D79996|IST1|9798|increased sodium tolerance 1 homolog (yeast)##BC000430|IST1|9798|increased sodium tolerance 1 homolog (yeast)##BC004359|IST1|9798|increased sodium tolerance 1 homolog (yeast)##NM_014761|IST1|9798|increased sodium tolerance 1 homolog (yeast)##BC000116|IST1|9798|increased sodium tolerance 1 homolog (yeast)##NM_001126102|HP|3240|haptoglobin##NM_005143|HP|3240|haptoglobin##AK314700|HP|3240|haptoglobin##BC107587|HP|3240|haptoglobin##AK055872|HP|3240|haptoglobin##BC017862|HP|3240|haptoglobin##BC058031|HP|3240|haptoglobin##BC070299|HP|3240|haptoglobin##K01763|HP|3240|haptoglobin##L29394|HP|3240|haptoglobin##BC121124|HP|3240|haptoglobin##BC121125|HP|3240|haptoglobin##X00637|HP|3240|haptoglobin##K00422|HP|3240|haptoglobin##NM_020995|HPR|3250|haptoglobin-related protein##AK308891|TXNL4B|54957|thioredoxin-like 4B##BC009646|TXNL4B|54957|thioredoxin-like 4B##AK222889|TXNL4B|54957|thioredoxin-like 4B##AK000518|TXNL4B|54957|thioredoxin-like 4B##NM_017853|TXNL4B|54957|thioredoxin-like 4B	0.036014	
chr3	98620592	98620739	reg1000967.p1	5.225	+	TSC_hg19_v1_chr3_-_98620527 AK056350 AB073146 NM_080927	-173	-	TSC_hg19_v1_chr3_+_98451544 AK315111 AF119391 BC023312 NM_006100	-169078	+	TSC_hg19_v1_chr3_+_98451106 AB022918 BC001266 AK001922 BC012092	-169420	+	AK311449 NM_001850 NM_020351 AF170702 BC013581	736785	+	TSC_hg19_v1_chr3_+_99536705 AK312483 NM_032359 BC006475 BC006512 AK291392 AK124387 BC071745 CU675421	916080	+	TSC_hg19_v1_chr3_-_99595018 EU531865 EU531866 BC027860 AK225855 AK096195 NM_014890	974326	-	AK056350|DCBLD2|131566|discoidin, CUB and LCCL domain containing 2##AB073146|DCBLD2|131566|discoidin, CUB and LCCL domain containing 2##NM_080927|DCBLD2|131566|discoidin, CUB and LCCL domain containing 2##AK315111|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AF119391|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC023312|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##NM_006100|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AB022918|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC001266|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK001922|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC012092|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK311449|COL8A1|1295|collagen, type VIII, alpha 1##NM_001850|COL8A1|1295|collagen, type VIII, alpha 1##NM_020351|COL8A1|1295|collagen, type VIII, alpha 1##AF170702|COL8A1|1295|collagen, type VIII, alpha 1##BC013581|COL8A1|1295|collagen, type VIII, alpha 1##AK312483|C3orf26|84319|chromosome 3 open reading frame 26##NM_032359|C3orf26|84319|chromosome 3 open reading frame 26##BC006475|C3orf26|84319|chromosome 3 open reading frame 26##BC006512|C3orf26|84319|chromosome 3 open reading frame 26##AK291392|C3orf26|84319|chromosome 3 open reading frame 26##AK124387|C3orf26|84319|chromosome 3 open reading frame 26##EU531865|FILIP1L|11259|filamin A interacting protein 1-like##EU531866|FILIP1L|11259|filamin A interacting protein 1-like##BC027860|FILIP1L|11259|filamin A interacting protein 1-like##AK225855|FILIP1L|11259|filamin A interacting protein 1-like##AK096195|FILIP1L|11259|filamin A interacting protein 1-like##NM_014890|FILIP1L|11259|filamin A interacting protein 1-like	0.083961	
chr2	10952952	10953060	reg1001216.p1	5.214	+	TSC_hg19_v1_chr2_-_10952912 AK294347 D49489 BC001312 NM_005742	-86	-	TSC_hg19_v1_chr2_-_10952851 DQ891186 DQ894369 AK289428	-178	-	TSC_hg19_v1_chr2_-_10942759 AK225496 U79278	-10302	-	BC026110 NM_002236 TSC_hg19_v1_chr2_+_11052109	99079	+	AK057872 NM_182500 BC120930 AK292828	320210	+	BC027625 NM_152391 TSC_hg19_v1_chr2_+_11295562	342545	+	AK294347|PDIA6|10130|protein disulfide isomerase family A, member 6##D49489|PDIA6|10130|protein disulfide isomerase family A, member 6##BC001312|PDIA6|10130|protein disulfide isomerase family A, member 6##NM_005742|PDIA6|10130|protein disulfide isomerase family A, member 6##DQ891186|PDIA6|10130|protein disulfide isomerase family A, member 6##DQ894369|PDIA6|10130|protein disulfide isomerase family A, member 6##AK289428|PDIA6|10130|protein disulfide isomerase family A, member 6##AK225496|PDIA6|10130|protein disulfide isomerase family A, member 6##U79278|PDIA6|10130|protein disulfide isomerase family A, member 6##BC026110|KCNF1|3754|potassium voltage-gated channel, subfamily F, member 1##NM_002236|KCNF1|3754|potassium voltage-gated channel, subfamily F, member 1##AK057872|C2orf50|130813|chromosome 2 open reading frame 50##NM_182500|C2orf50|130813|chromosome 2 open reading frame 50##BC120930|C2orf50|130813|chromosome 2 open reading frame 50##AK292828|C2orf50|130813|chromosome 2 open reading frame 50##BC027625|PQLC3|130814|PQ loop repeat containing 3##NM_152391|PQLC3|130814|PQ loop repeat containing 3	0.92617	denovo_WM_21:24:0.909
chr16	58163317	58163430	reg1001074.p1	5.211	+	TSC_hg19_v1_chr16_-_58163286 NM_013242	-63	-	TSC_hg19_v1_chr16_-_58163283 AK027099 AK297819 BC005152 AF087845 AF093680	-141	-	BC036495 BC055428 TSC_hg19_v1_chr16_+_58059491	-103891	+	DQ893025 DQ896269 AB463465 BC008812 NM_001896	68338	-	TSC_hg19_v1_chr16_+_58283871 AK299066 NM_001142302 NM_014157 AK314300 AL136785 BC126445 BC126447 AF161550 AB462987 AM392831 CR533506 HQ258203	120495	+	AK302175 AK058068 BC057843 NM_001080492	165541	-	NM_013242|C16orf80|29105|chromosome 16 open reading frame 80##AK027099|C16orf80|29105|chromosome 16 open reading frame 80##AK297819|C16orf80|29105|chromosome 16 open reading frame 80##BC005152|C16orf80|29105|chromosome 16 open reading frame 80##AF087845|C16orf80|29105|chromosome 16 open reading frame 80##AF093680|C16orf80|29105|chromosome 16 open reading frame 80##BC036495|MMP15|4324|matrix metallopeptidase 15 (membrane-inserted)##BC055428|MMP15|4324|matrix metallopeptidase 15 (membrane-inserted)##DQ893025|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##DQ896269|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##BC008812|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##NM_001896|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##AK299066|CCDC113|29070|coiled-coil domain containing 113##NM_001142302|CCDC113|29070|coiled-coil domain containing 113##NM_014157|CCDC113|29070|coiled-coil domain containing 113##AK314300|CCDC113|29070|coiled-coil domain containing 113##AL136785|CCDC113|29070|coiled-coil domain containing 113##BC126445|CCDC113|29070|coiled-coil domain containing 113##BC126447|CCDC113|29070|coiled-coil domain containing 113##AF161550|CCDC113|29070|coiled-coil domain containing 113##AM392831|CCDC113|29070|coiled-coil domain containing 113##CR533506|CCDC113|29070|coiled-coil domain containing 113##HQ258203|CCDC113|29070|coiled-coil domain containing 113##AK302175|PRSS54|221191|protease, serine, 54##AK058068|PRSS54|221191|protease, serine, 54##BC057843|PRSS54|221191|protease, serine, 54##NM_001080492|PRSS54|221191|protease, serine, 54	0.0	
chr5	137667535	137667659	reg1000842.p1	5.210	+	M34065 BC019089 TSC_hg19_v1_chr5_-_137667469 NM_001790 NM_022809	-104	-	AF051767 DQ890850 DQ894004 BC037951 AY358997 AK314022 AK297693 NM_001496 AY359037 TSC_hg19_v1_chr5_-_137610343	-57369	-	AK304635 TSC_hg19_v1_chr5_-_137549034 NM_004661	-118566	-	NM_001135647 TSC_hg19_v1_chr5_+_137673265 BC052993	5657	+	TSC_hg19_v1_chr5_+_137673789 NM_016605	6161	+	TSC_hg19_v1_chr5_+_137673954 AK026729 AK027412 AK310378 AK315567	6357	+	M34065|CDC25C|995|cell division cycle 25 homolog C (S. pombe)##BC019089|CDC25C|995|cell division cycle 25 homolog C (S. pombe)##NM_001790|CDC25C|995|cell division cycle 25 homolog C (S. pombe)##NM_022809|CDC25C|995|cell division cycle 25 homolog C (S. pombe)##AF051767|GFRA3|2676|GDNF family receptor alpha 3##DQ890850|GFRA3|2676|GDNF family receptor alpha 3##DQ894004|GFRA3|2676|GDNF family receptor alpha 3##BC037951|GFRA3|2676|GDNF family receptor alpha 3##AY358997|GFRA3|2676|GDNF family receptor alpha 3##AK314022|GFRA3|2676|GDNF family receptor alpha 3##AK297693|GFRA3|2676|GDNF family receptor alpha 3##NM_001496|GFRA3|2676|GDNF family receptor alpha 3##AY359037|GFRA3|2676|GDNF family receptor alpha 3##AK304635|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##NM_004661|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##NM_001135647|FAM53C|51307|family with sequence similarity 53, member C##BC052993|FAM53C|51307|family with sequence similarity 53, member C##NM_016605|FAM53C|51307|family with sequence similarity 53, member C##AK027412|FAM53C|51307|family with sequence similarity 53, member C##AK310378|FAM53C|51307|family with sequence similarity 53, member C##AK315567|FAM53C|51307|family with sequence similarity 53, member C	0.0	
chr10	99400303	99400441	reg1000711.p2	5.208	+	BC010230 BC040015 AJ431726 NM_001098831	-6491	-	AK289406 DQ338435 DQ338436 AL834132 BC022054 BC093023 TSC_hg19_v1_chr10_-_99393255 AK098791 AJ312050 NM_178832	-7113	-	AM393165 AM393183 AM393504 AM393792 NM_001009997 BC037252	-50954	+	TSC_hg19_v1_chr10_+_99400444 AJ303098 NM_018425	70	+	TSC_hg19_v1_chr10_+_99400490 BC003167 DQ893537 DQ893758 BT007330	112	+	TSC_hg19_v1_chr10_-_99446983 AK223099 AF218019 AK024533 AK222493 AF131791 NM_021732 AF241786 AY505173	46657	-	BC010230|MORN4|118812|MORN repeat containing 4##BC040015|MORN4|118812|MORN repeat containing 4##AJ431726|MORN4|118812|MORN repeat containing 4##NM_001098831|MORN4|118812|MORN repeat containing 4##AK289406|MORN4|118812|MORN repeat containing 4##DQ338435|MORN4|118812|MORN repeat containing 4##DQ338436|MORN4|118812|MORN repeat containing 4##AL834132|MORN4|118812|MORN repeat containing 4##BC022054|MORN4|118812|MORN repeat containing 4##BC093023|MORN4|118812|MORN repeat containing 4##AK098791|MORN4|118812|MORN repeat containing 4##AJ312050|MORN4|118812|MORN repeat containing 4##NM_178832|MORN4|118812|MORN repeat containing 4##AM393165|C10orf62|414157|chromosome 10 open reading frame 62##AM393183|C10orf62|414157|chromosome 10 open reading frame 62##AM393504|C10orf62|414157|chromosome 10 open reading frame 62##AM393792|C10orf62|414157|chromosome 10 open reading frame 62##NM_001009997|C10orf62|414157|chromosome 10 open reading frame 62##BC037252|C10orf62|414157|chromosome 10 open reading frame 62##AJ303098|PI4K2A|55361|phosphatidylinositol 4-kinase type 2 alpha##NM_018425|PI4K2A|55361|phosphatidylinositol 4-kinase type 2 alpha##BC003167|PI4K2A|55361|phosphatidylinositol 4-kinase type 2 alpha##DQ893537|PI4K2A|55361|phosphatidylinositol 4-kinase type 2 alpha##DQ893758|PI4K2A|55361|phosphatidylinositol 4-kinase type 2 alpha##BT007330|PI4K2A|55361|phosphatidylinositol 4-kinase type 2 alpha##AK223099|AVPI1|60370|arginine vasopressin-induced 1##AF218019|AVPI1|60370|arginine vasopressin-induced 1##AK024533|AVPI1|60370|arginine vasopressin-induced 1##AK222493|AVPI1|60370|arginine vasopressin-induced 1##AF131791|AVPI1|60370|arginine vasopressin-induced 1##NM_021732|AVPI1|60370|arginine vasopressin-induced 1##AF241786|AVPI1|60370|arginine vasopressin-induced 1	1.025039	denovo_WM_21:-61:0.993
chr19	10679797	10679926	reg1001048.p1	5.208	+	TSC_hg19_v1_chr19_-_10679653 NM_001800 BC001822 NM_079421	-223	-	CR542158 CU674892 U20498 DQ892872 DQ892951 DQ896120 AB464505 U49399 U40343 TSC_hg19_v1_chr19_-_10679530	-432	-	TSC_hg19_v1_chr19_-_10676697 AK093879 AX748348 NM_023008 AK300850	-3164	-	CU678450 CU678534 CU678860 BC003612 BC003387 AF020797 AK222946 AK315689 AK023863 BC005021 NM_005498	18087	-	TSC_hg19_v1_chr19_+_10713140 NM_001145056 AK309801 AK027519	33272	+	TSC_hg19_v1_chr19_+_10736228 FN668568 NM_020428 AK314582 BC040556 BC042692	56358	+	NM_001800|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##BC001822|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##NM_079421|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##CR542158|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##U20498|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##DQ892872|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##DQ892951|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##DQ896120|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##U49399|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##U40343|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##AK093879|KRI1|65095|KRI1 homolog (S. cerevisiae)##NM_023008|KRI1|65095|KRI1 homolog (S. cerevisiae)##AK300850|KRI1|65095|KRI1 homolog (S. cerevisiae)##BC003612|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##BC003387|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AF020797|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK222946|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK315689|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK023863|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##BC005021|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##NM_005498|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##NM_001145056|SLC44A2|57153|solute carrier family 44, member 2##AK309801|SLC44A2|57153|solute carrier family 44, member 2##AK027519|SLC44A2|57153|solute carrier family 44, member 2##FN668568|SLC44A2|57153|solute carrier family 44, member 2##NM_020428|SLC44A2|57153|solute carrier family 44, member 2##AK314582|SLC44A2|57153|solute carrier family 44, member 2##BC040556|SLC44A2|57153|solute carrier family 44, member 2##BC042692|SLC44A2|57153|solute carrier family 44, member 2	0.840024	denovo_WM_21:24:0.840
chr20	23331239	23331385	reg1000709.p1	5.206	+	AB527124 AM393282 AM393752 DQ891055 DQ894234 TSC_hg19_v1_chr20_-_23066962 AJ295142 AB209895 BC028075 AK299957 NM_012072 U94333	-264379	-	TSC_hg19_v1_chr20_-_23062805 AK056764	-268500	-	AB587391 BC053357 M16552 X05495 BC035602 NM_000361 TSC_hg19_v1_chr20_-_23030305 AK123557	-301074	-	BC003410 NM_013248 TSC_hg19_v1_chr20_+_23331435 AK026360 BC000759 BC003029 AF156957 BC002687	132	+	AK295362 TSC_hg19_v1_chr20_+_23342818 AK056477 AK293942 AK314599	11501	+	TSC_hg19_v1_chr20_+_23342853 AK289814	11547	+	AM393282|CD93|22918|CD93 molecule##AM393752|CD93|22918|CD93 molecule##DQ891055|CD93|22918|CD93 molecule##DQ894234|CD93|22918|CD93 molecule##AJ295142|CD93|22918|CD93 molecule##AB209895|CD93|22918|CD93 molecule##BC028075|CD93|22918|CD93 molecule##AK299957|CD93|22918|CD93 molecule##NM_012072|CD93|22918|CD93 molecule##U94333|CD93|22918|CD93 molecule##AK056764|CD93|22918|CD93 molecule##BC053357|THBD|7056|thrombomodulin##M16552|THBD|7056|thrombomodulin##X05495|THBD|7056|thrombomodulin##BC035602|THBD|7056|thrombomodulin##NM_000361|THBD|7056|thrombomodulin##AK123557|THBD|7056|thrombomodulin##BC003410|NXT1|29107|NTF2-like export factor 1##NM_013248|NXT1|29107|NTF2-like export factor 1##AK026360|NXT1|29107|NTF2-like export factor 1##BC000759|NXT1|29107|NTF2-like export factor 1##BC003029|NXT1|29107|NTF2-like export factor 1##AF156957|NXT1|29107|NTF2-like export factor 1##BC002687|NXT1|29107|NTF2-like export factor 1##AK295362|GZF1|64412|GDNF-inducible zinc finger protein 1##AK056477|GZF1|64412|GDNF-inducible zinc finger protein 1##AK293942|GZF1|64412|GDNF-inducible zinc finger protein 1##AK314599|GZF1|64412|GDNF-inducible zinc finger protein 1##AK289814|GZF1|64412|GDNF-inducible zinc finger protein 1	0.03813	
chr13	73632988	73633093	reg1000916.p1	5.198	+	TSC_hg19_v1_chr13_+_73356270 NM_006346 AK309828 BC006009 BC008432 BC041806 BC051911 AY370776 AY375528	-276730	+	BC056143 TSC_hg19_v1_chr13_-_73356083 AK314715 BC038101 NM_001128226 NM_014953	-276834	-	AL832266 TSC_hg19_v1_chr13_-_73356067 AB023225 BC012468	-276978	-	TSC_hg19_v1_chr13_+_73633142 AK296900 NM_001730 AK304284 BC007695 AF287272 BC014302 AB030824 BC042131	164	+	AF161471 AF113122 NM_007249	1074949	-	TSC_hg19_v1_chr13_-_74708425 AK291397	1075356	-	NM_006346|PIBF1|10464|progesterone immunomodulatory binding factor 1##AK309828|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC006009|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC008432|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC041806|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC051911|PIBF1|10464|progesterone immunomodulatory binding factor 1##AY370776|PIBF1|10464|progesterone immunomodulatory binding factor 1##AY375528|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC056143|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##AK314715|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##BC038101|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##NM_001128226|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##NM_014953|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##AL832266|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##AB023225|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##BC012468|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##AK296900|KLF5|688|Kruppel-like factor 5 (intestinal)##NM_001730|KLF5|688|Kruppel-like factor 5 (intestinal)##AK304284|KLF5|688|Kruppel-like factor 5 (intestinal)##BC007695|KLF5|688|Kruppel-like factor 5 (intestinal)##AF287272|KLF5|688|Kruppel-like factor 5 (intestinal)##BC014302|KLF5|688|Kruppel-like factor 5 (intestinal)##AB030824|KLF5|688|Kruppel-like factor 5 (intestinal)##BC042131|KLF5|688|Kruppel-like factor 5 (intestinal)##AF161471|KLF12|11278|Kruppel-like factor 12##AF113122|KLF12|11278|Kruppel-like factor 12##NM_007249|KLF12|11278|Kruppel-like factor 12##AK291397|KLF12|11278|Kruppel-like factor 12	0.023868	
chr1	36235572	36235670	reg1001136.p2	5.195	+	TSC_hg19_v1_chr1_-_36235569 BC113116 BC115023 BC115024 BC115025 BC115026 BC115027 BC137279 BC140789 AF297866 NM_001190481 NM_022111 BC038991 BC018670 BC062215 AK308193	-106	-	TSC_hg19_v1_chr1_-_36184816 AK096303 NM_152374	-50830	-	TSC_hg19_v1_chr1_-_36184424 BC026909 AK294352	-51209	-	TSC_hg19_v1_chr1_+_36273802 AB046787 BC152450 NM_017629	38199	+	TSC_hg19_v1_chr1_+_36348795 AF093097 NM_012199	113182	+	TSC_hg19_v1_chr1_+_36348815 BC063275	113193	+	BC113116|CLSPN|63967|claspin##BC115023|CLSPN|63967|claspin##BC115024|CLSPN|63967|claspin##BC115025|CLSPN|63967|claspin##BC115026|CLSPN|63967|claspin##BC115027|CLSPN|63967|claspin##BC137279|CLSPN|63967|claspin##BC140789|CLSPN|63967|claspin##AF297866|CLSPN|63967|claspin##NM_001190481|CLSPN|63967|claspin##NM_022111|CLSPN|63967|claspin##BC038991|CLSPN|63967|claspin##BC018670|CLSPN|63967|claspin##BC062215|CLSPN|63967|claspin##AK308193|CLSPN|63967|claspin##AK096303|C1orf216|127703|chromosome 1 open reading frame 216##NM_152374|C1orf216|127703|chromosome 1 open reading frame 216##BC026909|C1orf216|127703|chromosome 1 open reading frame 216##AK294352|C1orf216|127703|chromosome 1 open reading frame 216##AB046787|EIF2C4|192670|eukaryotic translation initiation factor 2C, 4##BC152450|EIF2C4|192670|eukaryotic translation initiation factor 2C, 4##NM_017629|EIF2C4|192670|eukaryotic translation initiation factor 2C, 4##AF093097|EIF2C1|26523|eukaryotic translation initiation factor 2C, 1##NM_012199|EIF2C1|26523|eukaryotic translation initiation factor 2C, 1##BC063275|EIF2C1|26523|eukaryotic translation initiation factor 2C, 1	0.0	
chr1	206736456	206736561	reg1000991.p1	5.191	+	TSC_hg19_v1_chr1_+_206730897 CU692112 EU831661	-5611	+	AL832784 AY261332 AK292039 TSC_hg19_v1_chr1_+_206730613	-5900	+	TSC_hg19_v1_chr1_+_206730542 BC042651 AY216268	-5988	+	DQ891590 DQ894784 TSC_hg19_v1_chr1_-_206785812 BC039134 BC058905 AK225259 BC001585 AF220417 AF262403 AK294536 AK001852	49247	-	TSC_hg19_v1_chr1_-_206785905 NM_001201478 NM_006893	49375	-	TSC_hg19_v1_chr1_+_206808880 AK291189 AK308082 AK313245 NM_001004023 NM_003582 BC048258 AY590695 Y12735 AF186773 BC015501	72336	+	EU831661|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AL832784|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AY261332|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AK292039|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##BC042651|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AY216268|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##DQ891590|EIF2D|1939|eukaryotic translation initiation factor 2D##DQ894784|EIF2D|1939|eukaryotic translation initiation factor 2D##BC039134|EIF2D|1939|eukaryotic translation initiation factor 2D##BC058905|EIF2D|1939|eukaryotic translation initiation factor 2D##AK225259|EIF2D|1939|eukaryotic translation initiation factor 2D##BC001585|EIF2D|1939|eukaryotic translation initiation factor 2D##AF220417|EIF2D|1939|eukaryotic translation initiation factor 2D##AF262403|EIF2D|1939|eukaryotic translation initiation factor 2D##AK294536|EIF2D|1939|eukaryotic translation initiation factor 2D##AK001852|EIF2D|1939|eukaryotic translation initiation factor 2D##NM_001201478|EIF2D|1939|eukaryotic translation initiation factor 2D##NM_006893|EIF2D|1939|eukaryotic translation initiation factor 2D##AK291189|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AK308082|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AK313245|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##NM_001004023|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##NM_003582|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AY590695|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##Y12735|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AF186773|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##BC015501|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	0.0	
chr11	118799314	118799412	reg1001143.p2	5.183	+	AB094091 NM_182557	-17751	-	NM_032966 X68829	-35263	+	AK291512 NM_001716 BC110352 X68149 AB464488	-44803	+	NM_006760 Y13645 BC113900 AY455312 AB009454	27700	+	AB094092 NM_181721 BC028191 BC125040 BC038969	43115	+	TSC_hg19_v1_chr11_+_118868847 AB094093 NM_198489	69486	+	AB094091|BCL9L|283149|B-cell CLL/lymphoma 9-like##NM_182557|BCL9L|283149|B-cell CLL/lymphoma 9-like##NM_032966|CXCR5|643|chemokine (C-X-C motif) receptor 5##X68829|CXCR5|643|chemokine (C-X-C motif) receptor 5##AK291512|CXCR5|643|chemokine (C-X-C motif) receptor 5##NM_001716|CXCR5|643|chemokine (C-X-C motif) receptor 5##BC110352|CXCR5|643|chemokine (C-X-C motif) receptor 5##X68149|CXCR5|643|chemokine (C-X-C motif) receptor 5##NM_006760|UPK2|7379|uroplakin 2##Y13645|UPK2|7379|uroplakin 2##BC113900|UPK2|7379|uroplakin 2##AY455312|UPK2|7379|uroplakin 2##AB009454|UPK2|7379|uroplakin 2##AB094092|FOXR1|283150|forkhead box R1##NM_181721|FOXR1|283150|forkhead box R1##BC028191|FOXR1|283150|forkhead box R1##BC125040|FOXR1|283150|forkhead box R1##BC038969|FOXR1|283150|forkhead box R1##AB094093|CCDC84|338657|coiled-coil domain containing 84##NM_198489|CCDC84|338657|coiled-coil domain containing 84	0.064293	
chr19	16296085	16296198	reg1001024.p2	5.177	+	AB050868 BC069320 BC069428 BC069524 NM_054113 HQ258101 BC112200 BC113591	-11831	-	TSC_hg19_v1_chr19_+_16254533 AK027792 AK131222 AK300027 AK298682 AK307563 BC016826	-41639	+	TSC_hg19_v1_chr19_-_16250705 AK095221	-45437	-	TSC_hg19_v1_chr19_+_16296220 AK312058 BC000639 AL050157 NM_014077 BC017286 AF151902 AM393549 AM393669	91	+	AK293188 NM_001130524 NM_032493 TSC_hg19_v1_chr19_+_16308721 AK297824 BC017469 AB209808 AF290613 AB590055 DQ059565	12609	+	TSC_hg19_v1_chr19_+_16435636 AK225820 BC071983 BC035342 AF205849 NM_016270	139500	+	AB050868|CIB3|117286|calcium and integrin binding family member 3##BC069320|CIB3|117286|calcium and integrin binding family member 3##BC069428|CIB3|117286|calcium and integrin binding family member 3##BC069524|CIB3|117286|calcium and integrin binding family member 3##NM_054113|CIB3|117286|calcium and integrin binding family member 3##HQ258101|CIB3|117286|calcium and integrin binding family member 3##BC112200|CIB3|117286|calcium and integrin binding family member 3##BC113591|CIB3|117286|calcium and integrin binding family member 3##AK027792|HSH2D|84941|hematopoietic SH2 domain containing##AK131222|HSH2D|84941|hematopoietic SH2 domain containing##AK300027|HSH2D|84941|hematopoietic SH2 domain containing##AK298682|HSH2D|84941|hematopoietic SH2 domain containing##AK307563|HSH2D|84941|hematopoietic SH2 domain containing##BC016826|HSH2D|84941|hematopoietic SH2 domain containing##AK312058|FAM32A|26017|family with sequence similarity 32, member A##BC000639|FAM32A|26017|family with sequence similarity 32, member A##AL050157|FAM32A|26017|family with sequence similarity 32, member A##NM_014077|FAM32A|26017|family with sequence similarity 32, member A##BC017286|FAM32A|26017|family with sequence similarity 32, member A##AF151902|FAM32A|26017|family with sequence similarity 32, member A##AM393549|FAM32A|26017|family with sequence similarity 32, member A##AM393669|FAM32A|26017|family with sequence similarity 32, member A##AK293188|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_001130524|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_032493|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK297824|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC017469|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AB209808|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AF290613|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##DQ059565|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK225820|KLF2|10365|Kruppel-like factor 2 (lung)##BC071983|KLF2|10365|Kruppel-like factor 2 (lung)##BC035342|KLF2|10365|Kruppel-like factor 2 (lung)##AF205849|KLF2|10365|Kruppel-like factor 2 (lung)##NM_016270|KLF2|10365|Kruppel-like factor 2 (lung)	0.988064	denovo_WM_21:22:0.966
chr22	41347627	41347755	reg1001077.p2	5.175	+	TSC_hg19_v1_chr22_+_41347389 BC017370 CR456560 AK315722 AF140598 BC001466 AB590096 AF142059 CU013160 CU013448 CU674722 AF085906 AY099360	-285	+	TSC_hg19_v1_chr22_+_41347364 NM_014248	-343	+	AB528124 CU013018 CU013306 CR456468 BC112135 AF085232 NM_145174	-89628	-	TSC_hg19_v1_chr22_+_41487787 U01877	140099	+	TSC_hg19_v1_chr22_+_41488610 NM_001429 BC053889	140935	+	TSC_hg19_v1_chr22_-_41593483 BC040700	245798	-	BC017370|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##CR456560|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AK315722|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AF140598|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##BC001466|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AF142059|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##CU013160|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##CU013448|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AF085906|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AY099360|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##NM_014248|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##CU013018|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##CU013306|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##CR456468|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##BC112135|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##AF085232|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##NM_145174|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##U01877|EP300|2033|E1A binding protein p300##NM_001429|EP300|2033|E1A binding protein p300##BC053889|EP300|2033|E1A binding protein p300	0.909146	denovo_WM_21:11:0.909
chr10	75255820	75255925	reg1000874.p1	5.174	+	TSC_hg19_v1_chr10_-_75255763 M29550 M29551 BC028049 NM_001142353 NM_001142354 NM_021132	-104	-	AJ488506 TSC_hg19_v1_chr10_-_75255746 BC035464	-140	-	AB489159 TSC_hg19_v1_chr10_-_75255664 AK301582	-202	-	AJ583820 NM_152586	79551	-	TSC_hg19_v1_chr10_-_75401273 AL359210 AF240633 AY013297 AK300683 AK308200	145376	-	TSC_hg19_v1_chr10_-_75401524 AJ278124 BC025753 NM_021245	145652	-	M29550|PPP3CB|5532|protein phosphatase 3, catalytic subunit, beta isozyme##M29551|PPP3CB|5532|protein phosphatase 3, catalytic subunit, beta isozyme##BC028049|PPP3CB|5532|protein phosphatase 3, catalytic subunit, beta isozyme##NM_001142353|PPP3CB|5532|protein phosphatase 3, catalytic subunit, beta isozyme##NM_001142354|PPP3CB|5532|protein phosphatase 3, catalytic subunit, beta isozyme##NM_021132|PPP3CB|5532|protein phosphatase 3, catalytic subunit, beta isozyme##AJ488506|PPP3CB|5532|protein phosphatase 3, catalytic subunit, beta isozyme##BC035464|PPP3CB|5532|protein phosphatase 3, catalytic subunit, beta isozyme##AK301582|PPP3CB|5532|protein phosphatase 3, catalytic subunit, beta isozyme##AJ583820|USP54|159195|ubiquitin specific peptidase 54##NM_152586|USP54|159195|ubiquitin specific peptidase 54##AL359210|MYOZ1|58529|myozenin 1##AF240633|MYOZ1|58529|myozenin 1##AY013297|MYOZ1|58529|myozenin 1##AK300683|MYOZ1|58529|myozenin 1##AK308200|MYOZ1|58529|myozenin 1##AJ278124|MYOZ1|58529|myozenin 1##BC025753|MYOZ1|58529|myozenin 1##NM_021245|MYOZ1|58529|myozenin 1	0.0	
chr18	12991162	12991276	reg1001076.p1	5.171	+	TSC_hg19_v1_chr18_+_12948029 AF136976 AK056940 AK291226 BC012430 AF255625 AF431970 AF514996 CU680322	-43155	+	TSC_hg19_v1_chr18_+_12948009 AK314403	-43213	+	TSC_hg19_v1_chr18_+_12947986 NM_001013437 NM_031216	-43234	+	TSC_hg19_v1_chr18_+_12991360 AK096548 NM_032142	126	+	TSC_hg19_v1_chr18_+_13218783 NM_181481 NM_181482 BC030199	227566	+	NM_001003674 NM_001003675	620445	+	AF136976|SEH1L|81929|SEH1-like (S. cerevisiae)##AK056940|SEH1L|81929|SEH1-like (S. cerevisiae)##AK291226|SEH1L|81929|SEH1-like (S. cerevisiae)##BC012430|SEH1L|81929|SEH1-like (S. cerevisiae)##AF255625|SEH1L|81929|SEH1-like (S. cerevisiae)##AF431970|SEH1L|81929|SEH1-like (S. cerevisiae)##AF514996|SEH1L|81929|SEH1-like (S. cerevisiae)##AK314403|SEH1L|81929|SEH1-like (S. cerevisiae)##NM_001013437|SEH1L|81929|SEH1-like (S. cerevisiae)##NM_031216|SEH1L|81929|SEH1-like (S. cerevisiae)##AK096548|CEP192|55125|centrosomal protein 192kDa##NM_032142|CEP192|55125|centrosomal protein 192kDa##NM_181481|C18orf1|753|chromosome 18 open reading frame 1##NM_181482|C18orf1|753|chromosome 18 open reading frame 1##BC030199|C18orf1|753|chromosome 18 open reading frame 1##NM_001003674|C18orf1|753|chromosome 18 open reading frame 1##NM_001003675|C18orf1|753|chromosome 18 open reading frame 1	0.822114	denovo_WM_21:20:0.778
chr16	16002027	16002151	reg1000955.p1	5.170	+	AL832498 TSC_hg19_v1_chr16_-_15982471	-19604	-	AK055715 NM_144600 TSC_hg19_v1_chr16_-_15982448 BC022321 AK056798 AY507846	-19636	-	BC101677 BC104906 BC143364 AB020673 AY520816 AY520817 TSC_hg19_v1_chr16_-_15950886 AK308389 BC031040 EU489063 NM_001040113 NM_001040114 NM_002474 NM_022844	-51220	-	TSC_hg19_v1_chr16_+_16043442 L05628 NM_004996 NM_019862 NM_019898 NM_019899 NM_019900 X78338	41275	+	TSC_hg19_v1_chr16_+_16146613 HQ917065	144529	+	AF168791 AM711638 AM774324 BC050733 AF076622 BC131732 U66689 NM_001079528 NM_001171 AY078405 AK298295	315231	-	AL832498|FOPNL|123811|FGFR1OP N-terminal like##AK055715|FOPNL|123811|FGFR1OP N-terminal like##NM_144600|FOPNL|123811|FGFR1OP N-terminal like##BC022321|FOPNL|123811|FGFR1OP N-terminal like##AK056798|FOPNL|123811|FGFR1OP N-terminal like##AY507846|FOPNL|123811|FGFR1OP N-terminal like##BC101677|MYH11|4629|myosin, heavy chain 11, smooth muscle##BC104906|MYH11|4629|myosin, heavy chain 11, smooth muscle##BC143364|MYH11|4629|myosin, heavy chain 11, smooth muscle##AB020673|MYH11|4629|myosin, heavy chain 11, smooth muscle##AY520816|MYH11|4629|myosin, heavy chain 11, smooth muscle##AY520817|MYH11|4629|myosin, heavy chain 11, smooth muscle##AK308389|MYH11|4629|myosin, heavy chain 11, smooth muscle##BC031040|MYH11|4629|myosin, heavy chain 11, smooth muscle##EU489063|MYH11|4629|myosin, heavy chain 11, smooth muscle##NM_001040113|MYH11|4629|myosin, heavy chain 11, smooth muscle##NM_001040114|MYH11|4629|myosin, heavy chain 11, smooth muscle##NM_002474|MYH11|4629|myosin, heavy chain 11, smooth muscle##NM_022844|MYH11|4629|myosin, heavy chain 11, smooth muscle##L05628|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_004996|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019862|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019898|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019899|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019900|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##X78338|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##AF168791|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AM711638|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AM774324|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##BC050733|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AF076622|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##BC131732|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##NM_001079528|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##NM_001171|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AY078405|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AK298295|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6	0.86693	denovo_WM_21:-33:0.823
chr19	6737857	6737988	reg1000051.p2	5.170	+	TSC_hg19_v1_chr19_-_6737615 BC146909 AX775899 NM_001080452	-304	-	TSC_hg19_v1_chr19_-_6737592 AK291968	-327	-	AL365404 TSC_hg19_v1_chr19_-_6737583	-347	-	TSC_hg19_v1_chr19_+_6739712 NM_004240 AK313296 AB007845 AB072596 AK223109 AF502289 AJ000414 AY081141 BC013002 CU680464 DQ892747 DQ895993 AF380114 BT006698 BT020167 BT020171 CR536513	1812	+	TSC_hg19_v1_chr19_-_6767447 AK225386 AK292781 AK299406 AK310659 BC006281 AF124249 AY358406 NM_005490 AK290293	29585	-	TSC_hg19_v1_chr19_+_6772718 NM_005428 AK225710 AK313307	34802	+	BC146909|GPR108|56927|G protein-coupled receptor 108##AX775899|GPR108|56927|G protein-coupled receptor 108##NM_001080452|GPR108|56927|G protein-coupled receptor 108##AK291968|GPR108|56927|G protein-coupled receptor 108##AL365404|GPR108|56927|G protein-coupled receptor 108##NM_004240|TRIP10|9322|thyroid hormone receptor interactor 10##AK313296|TRIP10|9322|thyroid hormone receptor interactor 10##AB007845|TRIP10|9322|thyroid hormone receptor interactor 10##AB072596|TRIP10|9322|thyroid hormone receptor interactor 10##AK223109|TRIP10|9322|thyroid hormone receptor interactor 10##AF502289|TRIP10|9322|thyroid hormone receptor interactor 10##AJ000414|TRIP10|9322|thyroid hormone receptor interactor 10##AY081141|TRIP10|9322|thyroid hormone receptor interactor 10##BC013002|TRIP10|9322|thyroid hormone receptor interactor 10##DQ892747|TRIP10|9322|thyroid hormone receptor interactor 10##DQ895993|TRIP10|9322|thyroid hormone receptor interactor 10##AF380114|TRIP10|9322|thyroid hormone receptor interactor 10##BT006698|TRIP10|9322|thyroid hormone receptor interactor 10##BT020167|TRIP10|9322|thyroid hormone receptor interactor 10##BT020171|TRIP10|9322|thyroid hormone receptor interactor 10##CR536513|TRIP10|9322|thyroid hormone receptor interactor 10##AK225386|SH2D3A|10045|SH2 domain containing 3A##AK292781|SH2D3A|10045|SH2 domain containing 3A##AK299406|SH2D3A|10045|SH2 domain containing 3A##AK310659|SH2D3A|10045|SH2 domain containing 3A##BC006281|SH2D3A|10045|SH2 domain containing 3A##AF124249|SH2D3A|10045|SH2 domain containing 3A##AY358406|SH2D3A|10045|SH2 domain containing 3A##NM_005490|SH2D3A|10045|SH2 domain containing 3A##AK290293|SH2D3A|10045|SH2 domain containing 3A##NM_005428|VAV1|7409|vav 1 guanine nucleotide exchange factor##AK225710|VAV1|7409|vav 1 guanine nucleotide exchange factor##AK313307|VAV1|7409|vav 1 guanine nucleotide exchange factor	0.0	
chr19	8008683	8008807	reg1000835.p1	5.165	+	TSC_hg19_v1_chr19_-_8008615 AK289634 NM_006351	-89	-	AF026030 BC000679 AB590328 CU689670 BC033628 TSC_hg19_v1_chr19_-_8008548 DQ891301 DQ894486 AK223062 AK309415 AF041254	-193	-	TSC_hg19_v1_chr19_-_7991004 BC062702 AK098834 NM_206833	-17729	-	TSC_hg19_v1_chr19_-_8070526 U38175 BC003376 NM_001419	61780	-	AK292662 NM_001201359 NM_005624	108900	+	BC130561 BC144463 HQ258070 AB046579 BC125136 U86358 TSC_hg19_v1_chr19_+_8118008	109202	+	AK289634|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##NM_006351|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##AF026030|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##BC033628|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##DQ891301|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##DQ894486|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##AK223062|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##AK309415|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##AF041254|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##BC062702|CTXN1|404217|cortexin 1##AK098834|CTXN1|404217|cortexin 1##NM_206833|CTXN1|404217|cortexin 1##U38175|ELAVL1|1994|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)##BC003376|ELAVL1|1994|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)##NM_001419|ELAVL1|1994|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)##AK292662|CCL25|6370|chemokine (C-C motif) ligand 25##NM_001201359|CCL25|6370|chemokine (C-C motif) ligand 25##NM_005624|CCL25|6370|chemokine (C-C motif) ligand 25##BC130561|CCL25|6370|chemokine (C-C motif) ligand 25##BC144463|CCL25|6370|chemokine (C-C motif) ligand 25##HQ258070|CCL25|6370|chemokine (C-C motif) ligand 25##AB046579|CCL25|6370|chemokine (C-C motif) ligand 25##BC125136|CCL25|6370|chemokine (C-C motif) ligand 25##U86358|CCL25|6370|chemokine (C-C motif) ligand 25	0.243918	denovo_WM_21:-80:0.207
chr12	122101882	122102023	reg1001167.p1	5.164	+	TSC_hg19_v1_chr12_+_122064448 BC075831 NM_032790 BC013386 BC015369 BC104633 AK027372 CU677285	-37309	+	BC115379 BC115380 TSC_hg19_v1_chr12_-_122018879 AJ459424 BX648928 NM_032590	-83038	-	TSC_hg19_v1_chr12_-_122018152 AK127328 NM_001005366	-83693	-	BC057760 NM_173855	5607	-	TSC_hg19_v1_chr12_+_122150657 AK126568 NM_001080825 BC127768 BC127769 BC035884	48792	+	TSC_hg19_v1_chr12_-_122231563 AK000254 AF239923 BC018208 NM_019034	129622	-	BC075831|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##NM_032790|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC013386|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC015369|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC104633|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##AK027372|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC115379|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115380|KDM2B|84678|lysine (K)-specific demethylase 2B##AJ459424|KDM2B|84678|lysine (K)-specific demethylase 2B##BX648928|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_032590|KDM2B|84678|lysine (K)-specific demethylase 2B##AK127328|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_001005366|KDM2B|84678|lysine (K)-specific demethylase 2B##BC057760|MORN3|283385|MORN repeat containing 3##NM_173855|MORN3|283385|MORN repeat containing 3##AK126568|TMEM120B|144404|transmembrane protein 120B##NM_001080825|TMEM120B|144404|transmembrane protein 120B##BC127768|TMEM120B|144404|transmembrane protein 120B##BC127769|TMEM120B|144404|transmembrane protein 120B##BC035884|TMEM120B|144404|transmembrane protein 120B##AK000254|RHOF|54509|ras homolog gene family, member F (in filopodia)##AF239923|RHOF|54509|ras homolog gene family, member F (in filopodia)##BC018208|RHOF|54509|ras homolog gene family, member F (in filopodia)##NM_019034|RHOF|54509|ras homolog gene family, member F (in filopodia)	0.142232	
chr10	104953117	104953224	reg1001079.p1	5.162	+	BX648078 TSC_hg19_v1_chr10_-_104953030 BC001595 AK127670 AK291667 AK312517 D38524 NM_001134373 NM_012229	-123	-	TSC_hg19_v1_chr10_+_104678078 BC021222 AK023479 NM_017649 NM_199076 NM_199077	-275113	+	NM_020682 AK057833 AK225972 AF226730 AK309737 BC119637 BC119638	-323913	+	BC157875 BC171885 NM_001143909 BC137242 BC137243 BC157829 BC171806	52503	+	TSC_hg19_v1_chr10_+_105036894 BC006359 NM_032727 S78296 DQ892733 DQ895980	83703	+	TSC_hg19_v1_chr10_+_105037444 AB209785	84284	+	BX648078|NT5C2|22978|5'-nucleotidase, cytosolic II##BC001595|NT5C2|22978|5'-nucleotidase, cytosolic II##AK127670|NT5C2|22978|5'-nucleotidase, cytosolic II##AK291667|NT5C2|22978|5'-nucleotidase, cytosolic II##AK312517|NT5C2|22978|5'-nucleotidase, cytosolic II##D38524|NT5C2|22978|5'-nucleotidase, cytosolic II##NM_001134373|NT5C2|22978|5'-nucleotidase, cytosolic II##NM_012229|NT5C2|22978|5'-nucleotidase, cytosolic II##BC021222|CNNM2|54805|cyclin M2##AK023479|CNNM2|54805|cyclin M2##NM_017649|CNNM2|54805|cyclin M2##NM_199076|CNNM2|54805|cyclin M2##NM_199077|CNNM2|54805|cyclin M2##NM_020682|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AK057833|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AK225972|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AF226730|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AK309737|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##BC119637|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##BC119638|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##BC157875|LOC729020|729020|rcRPE##BC171885|LOC729020|729020|rcRPE##NM_001143909|LOC729020|729020|rcRPE##BC137242|LOC729020|729020|rcRPE##BC137243|LOC729020|729020|rcRPE##BC157829|LOC729020|729020|rcRPE##BC171806|LOC729020|729020|rcRPE##BC006359|INA|9118|internexin neuronal intermediate filament protein, alpha##NM_032727|INA|9118|internexin neuronal intermediate filament protein, alpha##S78296|INA|9118|internexin neuronal intermediate filament protein, alpha##DQ892733|INA|9118|internexin neuronal intermediate filament protein, alpha##DQ895980|INA|9118|internexin neuronal intermediate filament protein, alpha##AB209785|INA|9118|internexin neuronal intermediate filament protein, alpha	0.0	
chr19	57862508	57862644	reg1001219.p1	5.161	+	TSC_hg19_v1_chr19_+_57831849 NM_213598 AK131547	-30662	+	TSC_hg19_v1_chr19_+_57791852 AK292144 NM_006635 AK074582 AY329492	-70689	+	TSC_hg19_v1_chr19_+_57791351 AK298106	-71220	+	TSC_hg19_v1_chr19_+_57862669 NM_020657 AJ276316 BC111531 BC111532	87	+	AF058918 AF291676 AK055662 NM_173631 BC008889 BC032809 BC042681 AL832545 BC064426 AK291464	12340	+	TSC_hg19_v1_chr19_+_57901221 BC030788 NM_001172773 NM_152909 AK057494	38675	+	NM_213598|ZNF543|125919|zinc finger protein 543##AK131547|ZNF543|125919|zinc finger protein 543##AK292144|ZNF460|10794|zinc finger protein 460##NM_006635|ZNF460|10794|zinc finger protein 460##AK074582|ZNF460|10794|zinc finger protein 460##AY329492|ZNF460|10794|zinc finger protein 460##AK298106|ZNF460|10794|zinc finger protein 460##NM_020657|ZNF304|57343|zinc finger protein 304##AJ276316|ZNF304|57343|zinc finger protein 304##BC111531|ZNF304|57343|zinc finger protein 304##BC111532|ZNF304|57343|zinc finger protein 304##AF058918|TRAPPC2P1|10597|trafficking protein particle complex 2 pseudogene 1##AF291676|TRAPPC2P1|10597|trafficking protein particle complex 2 pseudogene 1##AK055662|ZNF547|284306|zinc finger protein 547##NM_173631|ZNF547|284306|zinc finger protein 547##BC008889|TRAPPC2P1|10597|trafficking protein particle complex 2 pseudogene 1##BC032809|TRAPPC2P1|10597|trafficking protein particle complex 2 pseudogene 1##BC042681|ZNF547|284306|zinc finger protein 547##AL832545|ZNF547|284306|zinc finger protein 547##AK291464|ZNF547|284306|zinc finger protein 547##BC030788|ZNF548|147694|zinc finger protein 548##NM_001172773|ZNF548|147694|zinc finger protein 548##NM_152909|ZNF548|147694|zinc finger protein 548##AK057494|ZNF548|147694|zinc finger protein 548	0.910528	denovo_WM_21:-10:0.911
chr14	90421101	90421228	reg1001180.p2	5.151	+	BC001787 BX247991 AK298930 AK094740 NM_145231	-104	-	TSC_hg19_v1_chr14_-_90085494 AK225967 AK308053 NM_001085471	-335569	-	TSC_hg19_v1_chr14_-_89883455 BC007506 NM_005197	-537754	-	TSC_hg19_v1_chr14_+_90422250 BC107877 NM_001008744 NM_018319	1082	+	TSC_hg19_v1_chr14_+_90422278 AK001952 BC015474 AK315549 BX161451	1115	+	NM_022054 BC012779	106943	+	BC001787|EFCAB11|90141|EF-hand calcium binding domain 11##BX247991|EFCAB11|90141|EF-hand calcium binding domain 11##AK298930|EFCAB11|90141|EF-hand calcium binding domain 11##AK094740|EFCAB11|90141|EF-hand calcium binding domain 11##NM_145231|EFCAB11|90141|EF-hand calcium binding domain 11##AK225967|FOXN3|1112|forkhead box N3##AK308053|FOXN3|1112|forkhead box N3##NM_001085471|FOXN3|1112|forkhead box N3##BC007506|FOXN3|1112|forkhead box N3##NM_005197|FOXN3|1112|forkhead box N3##BC107877|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##NM_001008744|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##NM_018319|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##AK001952|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##BC015474|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##AK315549|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##BX161451|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##NM_022054|KCNK13|56659|potassium channel, subfamily K, member 13##BC012779|KCNK13|56659|potassium channel, subfamily K, member 13	0.833546	denovo_WM_21:-22:0.834
chr1	232765930	232766055	reg1001210.p1	5.150	+	BC006013 NM_020808 AY168879	-114723	-	TSC_hg19_v1_chr1_+_231762561 AF222980 AJ506177 AJ506178 FJ804174 FJ804175 FJ804176 FJ804177 FJ804178 FJ804179 FJ804180 FJ804181 FJ804182 FJ804183 FJ804184 FJ804185 FJ804186 FJ804187 FJ804188 FJ804189 FJ804190 FJ804191 FJ804192 FJ804193 FJ804194 FJ804195 FJ804196 FJ804197 FJ804198 FJ804199 FJ804200 FJ804201 FJ804202 FJ804203 FJ804204 FJ804205 FJ804206 FJ804207 FJ804208 FJ804209 FJ804210 FJ804211 FJ804212 FJ804213 FJ804214 FJ804215 FJ804216 NM_001012957 NM_001012958 NM_001012959 NM_001164537 NM_001164538 NM_001164539 NM_001164540 NM_001164541 NM_001164542 NM_001164544 NM_001164545 NM_001164546 NM_001164547 NM_001164548 NM_001164549 NM_001164550 NM_001164551 NM_001164552 NM_001164553 NM_001164554 NM_001164555 NM_001164556 NM_018662 AB007926 BC151225 BC142622 BC038954	-1003437	+	FJ804217 FJ804218 FJ804219 FJ804220 FJ804221 FJ804222 FJ804223 FJ804224 NM_005999 X95073 TSC_hg19_v1_chr1_+_231664423 BC011797 BC000236 BC010376 AK313068	-1101561	+	TSC_hg19_v1_chr1_-_232878472 AK093200	112465	-	NM_019090 BC109122	174712	+	AK290216 TSC_hg19_v1_chr1_+_232941173 BC036663 AB037804	175159	+	BC006013|SIPA1L2|57568|signal-induced proliferation-associated 1 like 2##NM_020808|SIPA1L2|57568|signal-induced proliferation-associated 1 like 2##AY168879|SIPA1L2|57568|signal-induced proliferation-associated 1 like 2##AF222980|DISC1|27185|disrupted in schizophrenia 1##AJ506177|DISC1|27185|disrupted in schizophrenia 1##AJ506178|DISC1|27185|disrupted in schizophrenia 1##FJ804174|DISC1|27185|disrupted in schizophrenia 1##FJ804175|DISC1|27185|disrupted in schizophrenia 1##FJ804176|DISC1|27185|disrupted in schizophrenia 1##FJ804177|DISC1|27185|disrupted in schizophrenia 1##FJ804178|DISC1|27185|disrupted in schizophrenia 1##FJ804179|DISC1|27185|disrupted in schizophrenia 1##FJ804180|DISC1|27185|disrupted in schizophrenia 1##FJ804181|DISC1|27185|disrupted in schizophrenia 1##FJ804182|DISC1|27185|disrupted in schizophrenia 1##FJ804183|DISC1|27185|disrupted in schizophrenia 1##FJ804184|DISC1|27185|disrupted in schizophrenia 1##FJ804185|DISC1|27185|disrupted in schizophrenia 1##FJ804186|DISC1|27185|disrupted in schizophrenia 1##FJ804187|DISC1|27185|disrupted in schizophrenia 1##FJ804188|DISC1|27185|disrupted in schizophrenia 1##FJ804189|DISC1|27185|disrupted in schizophrenia 1##FJ804190|DISC1|27185|disrupted in schizophrenia 1##FJ804191|DISC1|27185|disrupted in schizophrenia 1##FJ804192|DISC1|27185|disrupted in schizophrenia 1##FJ804193|DISC1|27185|disrupted in schizophrenia 1##FJ804194|DISC1|27185|disrupted in schizophrenia 1##FJ804195|DISC1|27185|disrupted in schizophrenia 1##FJ804196|DISC1|27185|disrupted in schizophrenia 1##FJ804197|DISC1|27185|disrupted in schizophrenia 1##FJ804198|DISC1|27185|disrupted in schizophrenia 1##FJ804199|DISC1|27185|disrupted in schizophrenia 1##FJ804200|DISC1|27185|disrupted in schizophrenia 1##FJ804201|DISC1|27185|disrupted in schizophrenia 1##FJ804202|DISC1|27185|disrupted in schizophrenia 1##FJ804203|DISC1|27185|disrupted in schizophrenia 1##FJ804204|DISC1|27185|disrupted in schizophrenia 1##FJ804205|DISC1|27185|disrupted in schizophrenia 1##FJ804206|DISC1|27185|disrupted in schizophrenia 1##FJ804207|DISC1|27185|disrupted in schizophrenia 1##FJ804208|DISC1|27185|disrupted in schizophrenia 1##FJ804209|DISC1|27185|disrupted in schizophrenia 1##FJ804210|DISC1|27185|disrupted in schizophrenia 1##FJ804211|DISC1|27185|disrupted in schizophrenia 1##FJ804212|DISC1|27185|disrupted in schizophrenia 1##FJ804213|DISC1|27185|disrupted in schizophrenia 1##FJ804214|DISC1|27185|disrupted in schizophrenia 1##FJ804215|DISC1|27185|disrupted in schizophrenia 1##FJ804216|DISC1|27185|disrupted in schizophrenia 1##NM_001012957|DISC1|27185|disrupted in schizophrenia 1##NM_001012958|DISC1|27185|disrupted in schizophrenia 1##NM_001012959|DISC1|27185|disrupted in schizophrenia 1##NM_001164537|DISC1|27185|disrupted in schizophrenia 1##NM_001164538|DISC1|27185|disrupted in schizophrenia 1##NM_001164539|DISC1|27185|disrupted in schizophrenia 1##NM_001164540|DISC1|27185|disrupted in schizophrenia 1##NM_001164541|DISC1|27185|disrupted in schizophrenia 1##NM_001164542|DISC1|27185|disrupted in schizophrenia 1##NM_001164544|DISC1|27185|disrupted in schizophrenia 1##NM_001164545|DISC1|27185|disrupted in schizophrenia 1##NM_001164546|DISC1|27185|disrupted in schizophrenia 1##NM_001164547|DISC1|27185|disrupted in schizophrenia 1##NM_001164548|DISC1|27185|disrupted in schizophrenia 1##NM_001164549|DISC1|27185|disrupted in schizophrenia 1##NM_001164550|DISC1|27185|disrupted in schizophrenia 1##NM_001164551|DISC1|27185|disrupted in schizophrenia 1##NM_001164552|DISC1|27185|disrupted in schizophrenia 1##NM_001164553|DISC1|27185|disrupted in schizophrenia 1##NM_001164554|DISC1|27185|disrupted in schizophrenia 1##NM_001164555|DISC1|27185|disrupted in schizophrenia 1##NM_001164556|DISC1|27185|disrupted in schizophrenia 1##NM_018662|DISC1|27185|disrupted in schizophrenia 1##AB007926|DISC1|27185|disrupted in schizophrenia 1##BC151225|DISC1|27185|disrupted in schizophrenia 1##BC142622|DISC1|27185|disrupted in schizophrenia 1##BC038954|DISC1|27185|disrupted in schizophrenia 1##FJ804217|TSNAX-DISC1|100303453|TSNAX-DISC1 readthrough##FJ804218|TSNAX-DISC1|100303453|TSNAX-DISC1 readthrough##FJ804219|TSNAX-DISC1|100303453|TSNAX-DISC1 readthrough##FJ804220|TSNAX-DISC1|100303453|TSNAX-DISC1 readthrough##FJ804221|TSNAX-DISC1|100303453|TSNAX-DISC1 readthrough##FJ804222|TSNAX-DISC1|100303453|TSNAX-DISC1 readthrough##FJ804223|TSNAX-DISC1|100303453|TSNAX-DISC1 readthrough##FJ804224|TSNAX-DISC1|100303453|TSNAX-DISC1 readthrough##NM_005999|TSNAX|7257|translin-associated factor X##X95073|TSNAX|7257|translin-associated factor X##BC011797|TSNAX|7257|translin-associated factor X##BC010376|TSNAX|7257|translin-associated factor X##AK313068|TSNAX|7257|translin-associated factor X##NM_019090|KIAA1383|54627|KIAA1383##BC109122|KIAA1383|54627|KIAA1383##AK290216|KIAA1383|54627|KIAA1383##BC036663|KIAA1383|54627|KIAA1383##AB037804|KIAA1383|54627|KIAA1383	0.916784	denovo_WM_21:-40:0.917
chr2	113522248	113522361	reg1000706.p1	5.149	+	TSC_hg19_v1_chr2_-_113522187 AK316241 BC036217 AK097948 AK302875 AL832036 AK292530 NM_152515	-82	-	NM_005415 AK312738 TSC_hg19_v1_chr2_+_113403515 BC019944 L20859	-118784	+	AK096990 TSC_hg19_v1_chr2_+_113342182	-180115	+	NM_000575 BC035169	20668	-	X56087 X02532 K02770 M54933 TSC_hg19_v1_chr2_-_113594357 AK313983 BC008678 M15330 NM_000576	72040	-	AF167368 AF200496 NM_014439 NM_173202 NM_173203 NM_173204 BC020637 AB451333 AB451478 AB590279 AF251119 AF251120 AY071840 AY071841 CU676594 DQ891388	148264	+	AK316241|CKAP2L|150468|cytoskeleton associated protein 2-like##BC036217|CKAP2L|150468|cytoskeleton associated protein 2-like##AK097948|CKAP2L|150468|cytoskeleton associated protein 2-like##AK302875|CKAP2L|150468|cytoskeleton associated protein 2-like##AL832036|CKAP2L|150468|cytoskeleton associated protein 2-like##AK292530|CKAP2L|150468|cytoskeleton associated protein 2-like##NM_152515|CKAP2L|150468|cytoskeleton associated protein 2-like##NM_005415|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##AK312738|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##BC019944|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##L20859|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##AK096990|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##NM_000575|IL1A|3552|interleukin 1, alpha##BC035169|IL1A|3552|interleukin 1, alpha##X56087|IL1B|3553|interleukin 1, beta##X02532|IL1B|3553|interleukin 1, beta##K02770|IL1B|3553|interleukin 1, beta##M54933|IL1B|3553|interleukin 1, beta##AK313983|IL1B|3553|interleukin 1, beta##BC008678|IL1B|3553|interleukin 1, beta##M15330|IL1B|3553|interleukin 1, beta##NM_000576|IL1B|3553|interleukin 1, beta##AF167368|IL37|27178|interleukin 37##AF200496|IL37|27178|interleukin 37##NM_014439|IL37|27178|interleukin 37##NM_173202|IL37|27178|interleukin 37##NM_173203|IL37|27178|interleukin 37##NM_173204|IL37|27178|interleukin 37##BC020637|IL37|27178|interleukin 37##AB451333|IL37|27178|interleukin 37##AB451478|IL37|27178|interleukin 37##AF251119|IL37|27178|interleukin 37##AF251120|IL37|27178|interleukin 37##AY071840|IL37|27178|interleukin 37##AY071841|IL37|27178|interleukin 37##DQ891388|IL37|27178|interleukin 37	0.985932	denovo_WM_21:-51:0.894
chr18	56403802	56403873	reg1001160.p1	5.148	+	TSC_hg19_v1_chr18_+_56338830 AB528440 DQ892319 DQ895521	-64992	+	TSC_hg19_v1_chr18_+_56338790 AB026118	-65040	+	TSC_hg19_v1_chr18_+_56338693 AF130356 BC030143	-65109	+	NM_018181 AF295077 BC130618 BC130620	126282	+	TSC_hg19_v1_chr18_+_56530714 AB046849	127018	+	TSC_hg19_v1_chr18_+_56531281 BC036366	127512	+	DQ892319|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##DQ895521|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##AB026118|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##AF130356|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##BC030143|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##NM_018181|ZNF532|55205|zinc finger protein 532##AF295077|ZNF532|55205|zinc finger protein 532##BC130618|ZNF532|55205|zinc finger protein 532##BC130620|ZNF532|55205|zinc finger protein 532##AB046849|ZNF532|55205|zinc finger protein 532##BC036366|ZNF532|55205|zinc finger protein 532	0.0	
chr9	4792722	4792833	reg1000880.p1	5.139	+	AF183419 NM_001199853	-50735	-	NM_001199855	-50979	-	TSC_hg19_v1_chr9_-_4741309 NM_001199852 NM_016282	-51424	-	NM_005772 TSC_hg19_v1_chr9_+_4792833	56	+	TSC_hg19_v1_chr9_+_4792936 AK022904 BC001025 AK225872	146	+	TSC_hg19_v1_chr9_+_4792995 AJ276894 EU831474 EU831561 AF067172	266	+	AF183419|AK3|50808|adenylate kinase 3##NM_001199853|AK3|50808|adenylate kinase 3##NM_001199855|AK3|50808|adenylate kinase 3##NM_001199852|AK3|50808|adenylate kinase 3##NM_016282|AK3|50808|adenylate kinase 3##NM_005772|RCL1|10171|RNA terminal phosphate cyclase-like 1##AK022904|RCL1|10171|RNA terminal phosphate cyclase-like 1##BC001025|RCL1|10171|RNA terminal phosphate cyclase-like 1##AK225872|RCL1|10171|RNA terminal phosphate cyclase-like 1##AJ276894|RCL1|10171|RNA terminal phosphate cyclase-like 1##EU831474|RCL1|10171|RNA terminal phosphate cyclase-like 1##EU831561|RCL1|10171|RNA terminal phosphate cyclase-like 1##AF067172|RCL1|10171|RNA terminal phosphate cyclase-like 1	1.193815	denovo_WM_21:6:0.423	denovo_WM_21:-36:0.576
chr14	97263612	97263731	reg1000907.p2	5.128	+	TSC_hg19_v1_chr14_+_96968778 BX161482 BC015150	-294887	+	TSC_hg19_v1_chr14_+_96968726 BX248753 AK295020 AK307659 BC000927	-294925	+	TSC_hg19_v1_chr14_+_96968718 NM_001252006 NM_001252007 NM_032632 AK302406 BC036014	-294962	+	TSC_hg19_v1_chr14_+_97263749 NM_003384 AK290110 BC103761 AB000449 BC112075 BC113510 BC005970	44	+	AK098639 NM_182560	1914278	+	AY752976 AB043584 TSC_hg19_v1_chr14_-_99737679	2473946	-	BX161482|PAPOLA|10914|poly(A) polymerase alpha##BC015150|PAPOLA|10914|poly(A) polymerase alpha##BX248753|PAPOLA|10914|poly(A) polymerase alpha##AK295020|PAPOLA|10914|poly(A) polymerase alpha##AK307659|PAPOLA|10914|poly(A) polymerase alpha##BC000927|PAPOLA|10914|poly(A) polymerase alpha##NM_001252006|PAPOLA|10914|poly(A) polymerase alpha##NM_001252007|PAPOLA|10914|poly(A) polymerase alpha##NM_032632|PAPOLA|10914|poly(A) polymerase alpha##AK302406|PAPOLA|10914|poly(A) polymerase alpha##BC036014|PAPOLA|10914|poly(A) polymerase alpha##NM_003384|VRK1|7443|vaccinia related kinase 1##AK290110|VRK1|7443|vaccinia related kinase 1##BC103761|VRK1|7443|vaccinia related kinase 1##AB000449|VRK1|7443|vaccinia related kinase 1##BC112075|VRK1|7443|vaccinia related kinase 1##BC113510|VRK1|7443|vaccinia related kinase 1##BC005970|VRK1|7443|vaccinia related kinase 1##AK098639|C14orf177|283598|chromosome 14 open reading frame 177##NM_182560|C14orf177|283598|chromosome 14 open reading frame 177##AB043584|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)	0.967373	denovo_WM_21:-1:0.967
chr16	75498555	75498690	reg1000908.p1	5.128	+	TSC_hg19_v1_chr16_-_75498598 BC018082 NM_145254 AK298475 BX647432 BX648429 BX648484 AK311919	-21	-	AM392693 AM393662 AY302139 CU676164 TSC_hg19_v1_chr16_-_75498577	-84	-	TSC_hg19_v1_chr16_-_75498315 AK094930	-325	-	AF280086 NM_021615	30303	-	TSC_hg19_v1_chr16_-_75529279 AF219990	30657	-	TSC_hg19_v1_chr16_-_75529303 AK311527 AK093904	30675	-	BC018082|TMEM170A|124491|transmembrane protein 170A##NM_145254|TMEM170A|124491|transmembrane protein 170A##AK298475|TMEM170A|124491|transmembrane protein 170A##BX647432|TMEM170A|124491|transmembrane protein 170A##BX648429|TMEM170A|124491|transmembrane protein 170A##BX648484|TMEM170A|124491|transmembrane protein 170A##AK311919|TMEM170A|124491|transmembrane protein 170A##AY302139|TMEM170A|124491|transmembrane protein 170A##AK094930|TMEM170A|124491|transmembrane protein 170A##AF280086|CHST6|4166|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6##NM_021615|CHST6|4166|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6	0.094279	
chr7	99933627	99933743	reg1001247.p2	5.120	+	AB103084 TSC_hg19_v1_chr7_-_99933502 BC038996 D38435 D38499 BC110395 BC044214 BC067809	-144	-	BC056606 NM_001004351	-28361	+	BC065200 AK290510 TSC_hg19_v1_chr7_-_99869856 BC044886 BC090867 BC033723 BC053367 NM_178831	-63855	-	TSC_hg19_v1_chr7_+_99933747 AK056412 AK310352	70	+	TSC_hg19_v1_chr7_+_99933808 AL834317	137	+	AJ400845 NM_178238 AF161081	21946	+	BC038996|PMS2P1|5379|postmeiotic segregation increased 2 pseudogene 1##D38435|PMS2P1|5379|postmeiotic segregation increased 2 pseudogene 1##D38499|PMS2P1|5379|postmeiotic segregation increased 2 pseudogene 1##BC110395|PMS2P1|5379|postmeiotic segregation increased 2 pseudogene 1##BC044214|PMS2P1|5379|postmeiotic segregation increased 2 pseudogene 1##BC067809|PMS2P1|5379|postmeiotic segregation increased 2 pseudogene 1##BC056606|SPDYE3|441272|speedy homolog E3 (Xenopus laevis)##NM_001004351|SPDYE3|441272|speedy homolog E3 (Xenopus laevis)##BC065200|GATS|352954|GATS, stromal antigen 3 opposite strand##AK290510|GATS|352954|GATS, stromal antigen 3 opposite strand##BC044886|GATS|352954|GATS, stromal antigen 3 opposite strand##BC090867|GATS|352954|GATS, stromal antigen 3 opposite strand##BC033723|GATS|352954|GATS, stromal antigen 3 opposite strand##BC053367|GATS|352954|GATS, stromal antigen 3 opposite strand##NM_178831|GATS|352954|GATS, stromal antigen 3 opposite strand##AK056412|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AK310352|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AL834317|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AJ400845|PILRB|29990|paired immunoglobin-like type 2 receptor beta##NM_178238|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AF161081|PILRB|29990|paired immunoglobin-like type 2 receptor beta	0.992054	denovo_WM_21:5:0.981
chr11	71159447	71159597	reg1001123.p1	5.119	+	TSC_hg19_v1_chr11_-_71159471 AK303881 NM_001163817 NM_001360	-60	-	TSC_hg19_v1_chr11_-_71159417 AF034544 BC000054 AK312775 AK289497	-117	-	TSC_hg19_v1_chr11_-_70963627 AK096045	-195897	-	NM_018161 TSC_hg19_v1_chr11_+_71164256 AK022436 BC003638 BC003666	4714	+	AK225700 TSC_hg19_v1_chr11_+_71164286 AK001493 AB091316 CR457286	4780	+	AB126076 NM_001012503 BC136967 BC136968 AB528865 BC119736	78807	+	AK303881|DHCR7|1717|7-dehydrocholesterol reductase##NM_001163817|DHCR7|1717|7-dehydrocholesterol reductase##NM_001360|DHCR7|1717|7-dehydrocholesterol reductase##AF034544|DHCR7|1717|7-dehydrocholesterol reductase##BC000054|DHCR7|1717|7-dehydrocholesterol reductase##AK312775|DHCR7|1717|7-dehydrocholesterol reductase##AK289497|DHCR7|1717|7-dehydrocholesterol reductase##AK096045|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2##NM_018161|NADSYN1|55191|NAD synthetase 1##AK022436|NADSYN1|55191|NAD synthetase 1##BC003638|NADSYN1|55191|NAD synthetase 1##BC003666|NADSYN1|55191|NAD synthetase 1##AK225700|NADSYN1|55191|NAD synthetase 1##AK001493|NADSYN1|55191|NAD synthetase 1##AB091316|NADSYN1|55191|NAD synthetase 1##CR457286|NADSYN1|55191|NAD synthetase 1##AB126076|KRTAP5-7|440050|keratin associated protein 5-7##NM_001012503|KRTAP5-7|440050|keratin associated protein 5-7##BC136967|KRTAP5-7|440050|keratin associated protein 5-7##BC136968|KRTAP5-7|440050|keratin associated protein 5-7	0.602979	denovo_WM_21:7:0.432
chr2	47630099	47630261	reg1000902.p2	5.114	+	TSC_hg19_v1_chr2_+_47596449 AK026585 BC014785 M26481 M32325 X14758 M33011 M32306 DQ891338 DQ894520 CR542259 CR542283	-33635	+	NM_002354 TSC_hg19_v1_chr2_+_47596376	-33838	+	TSC_hg19_v1_chr2_-_47403685 NM_001743	-226471	-	TSC_hg19_v1_chr2_+_47630218 AK304496	24	+	TSC_hg19_v1_chr2_+_47630289 BC012599 NM_000251 U04045 AK222860 L47574 L47575 L47576 L47577 L47578 L47579 L47580 L47581 L47582 L47583	88	+	TSC_hg19_v1_chr2_+_47630294 AK223284 AK296831 AK297763 BX649122 BC021566 AK311330 DQ892558 DQ895772 AB489153 BC001122 U03911 CU692370 DQ648894	137	+	AK026585|EPCAM|4072|epithelial cell adhesion molecule##BC014785|EPCAM|4072|epithelial cell adhesion molecule##M26481|EPCAM|4072|epithelial cell adhesion molecule##M32325|EPCAM|4072|epithelial cell adhesion molecule##X14758|EPCAM|4072|epithelial cell adhesion molecule##M33011|EPCAM|4072|epithelial cell adhesion molecule##M32306|EPCAM|4072|epithelial cell adhesion molecule##DQ891338|EPCAM|4072|epithelial cell adhesion molecule##DQ894520|EPCAM|4072|epithelial cell adhesion molecule##CR542259|EPCAM|4072|epithelial cell adhesion molecule##CR542283|EPCAM|4072|epithelial cell adhesion molecule##NM_002354|EPCAM|4072|epithelial cell adhesion molecule##NM_001743|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##AK304496|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BC012599|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##NM_000251|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##U04045|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK222860|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47574|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47575|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47576|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47577|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47578|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47579|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47580|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47581|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47582|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47583|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK223284|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK296831|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK297763|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BX649122|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BC021566|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK311330|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##DQ892558|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##DQ895772|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BC001122|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##U03911|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##DQ648894|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)	0.615831	denovo_WM_21:-18:0.616
chr4	53588539	53588710	reg1001119.p1	5.108	+	TSC_hg19_v1_chr4_+_53578670 BC045566 BC015222 D28589	-9960	+	DQ896764 EU176797 GU455414 AK022614 TSC_hg19_v1_chr4_-_53525461 AK299883 BC037574 AK024318 AK296493 NM_022832	-63215	-	AK302438 NM_001134223	-65867	-	AY189288 TSC_hg19_v1_chr4_-_53617616	28966	-	AK095318 NM_001242690 NM_024534	29169	-	TSC_hg19_v1_chr4_+_53728483 AK021492 AK027267 AK314942 AY839725 AY839726 BC001087 BC001846 NM_023940 BC025694	139864	+	BC045566|SNHG13|57291|small nucleolar RNA host gene 13 (non-protein coding)##BC015222|SNHG13|57291|small nucleolar RNA host gene 13 (non-protein coding)##D28589|SNHG13|57291|small nucleolar RNA host gene 13 (non-protein coding)##DQ896764|USP46|64854|ubiquitin specific peptidase 46##EU176797|USP46|64854|ubiquitin specific peptidase 46##GU455414|USP46|64854|ubiquitin specific peptidase 46##AK022614|USP46|64854|ubiquitin specific peptidase 46##AK299883|USP46|64854|ubiquitin specific peptidase 46##BC037574|USP46|64854|ubiquitin specific peptidase 46##AK024318|USP46|64854|ubiquitin specific peptidase 46##AK296493|USP46|64854|ubiquitin specific peptidase 46##NM_022832|USP46|64854|ubiquitin specific peptidase 46##AK302438|USP46|64854|ubiquitin specific peptidase 46##NM_001134223|USP46|64854|ubiquitin specific peptidase 46##AY189288|ERVMER34-1|100288413|endogenous retrovirus group MER34, member 1##NM_001242690|ERVMER34-1|100288413|endogenous retrovirus group MER34, member 1##NM_024534|ERVMER34-1|100288413|endogenous retrovirus group MER34, member 1##AK027267|RASL11B|65997|RAS-like, family 11, member B##AK314942|RASL11B|65997|RAS-like, family 11, member B##AY839725|RASL11B|65997|RAS-like, family 11, member B##AY839726|RASL11B|65997|RAS-like, family 11, member B##BC001087|RASL11B|65997|RAS-like, family 11, member B##BC001846|RASL11B|65997|RAS-like, family 11, member B##NM_023940|RASL11B|65997|RAS-like, family 11, member B##BC025694|RASL11B|65997|RAS-like, family 11, member B	0.040893	
chr11	34460357	34460474	reg1000936.p1	5.105	+	TSC_hg19_v1_chr11_-_34379556 AK291744 NM_145804	-80860	-	TSC_hg19_v1_chr11_+_34127208 AK294044 AL136882 AK001636 BC014440 BC020205	-333165	+	NM_001144030 NM_024662 TSC_hg19_v1_chr11_+_34127175 AK022241 AK225341 BC035558 AB051496	-333258	+	TSC_hg19_v1_chr11_+_34460487 AK291585 NM_001752 BC110398 AK315350 X04076 BC112217 BC112219	59	+	TSC_hg19_v1_chr11_+_34460533 AB587573 AY028632 HQ258304	134	+	AB528439 AK290817 AF115402 NM_001243081 NM_198381	72816	-	AK291744|ABTB2|25841|ankyrin repeat and BTB (POZ) domain containing 2##NM_145804|ABTB2|25841|ankyrin repeat and BTB (POZ) domain containing 2##AK294044|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AL136882|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AK001636|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##BC014440|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##BC020205|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##NM_001144030|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##NM_024662|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AK022241|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AK225341|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##BC035558|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AB051496|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AK291585|CAT|847|catalase##NM_001752|CAT|847|catalase##BC110398|CAT|847|catalase##AK315350|CAT|847|catalase##X04076|CAT|847|catalase##BC112217|CAT|847|catalase##BC112219|CAT|847|catalase##AY028632|CAT|847|catalase##HQ258304|CAT|847|catalase##AK290817|ELF5|2001|E74-like factor 5 (ets domain transcription factor)##AF115402|ELF5|2001|E74-like factor 5 (ets domain transcription factor)##NM_001243081|ELF5|2001|E74-like factor 5 (ets domain transcription factor)##NM_198381|ELF5|2001|E74-like factor 5 (ets domain transcription factor)	1.952681	denovo_WM_21:-15:0.993	denovo_WM_21:31:0.960
chr17	45727014	45727137	reg1000354.p1	5.100	+	TSC_hg19_v1_chr17_+_45726838 AK316421	-234	+	TSC_hg19_v1_chr17_+_45608738 BC065294	-118324	+	TSC_hg19_v1_chr17_+_45608647 AK095877 AK296887 AJ132583	-118394	+	L38951 NM_002265 TSC_hg19_v1_chr17_+_45727284	209	+	BC036703 TSC_hg19_v1_chr17_+_45727323 AK314780 BC003572 BC024045	270	+	TSC_hg19_v1_chr17_+_45727579 DQ892863 DQ896112 AB384802 BT009797	509	+	AK316421|KPNB1|3837|karyopherin (importin) beta 1##BC065294|NPEPPS|9520|aminopeptidase puromycin sensitive##AK095877|NPEPPS|9520|aminopeptidase puromycin sensitive##AK296887|NPEPPS|9520|aminopeptidase puromycin sensitive##AJ132583|NPEPPS|9520|aminopeptidase puromycin sensitive##L38951|KPNB1|3837|karyopherin (importin) beta 1##NM_002265|KPNB1|3837|karyopherin (importin) beta 1##BC036703|KPNB1|3837|karyopherin (importin) beta 1##AK314780|KPNB1|3837|karyopherin (importin) beta 1##BC003572|KPNB1|3837|karyopherin (importin) beta 1##BC024045|KPNB1|3837|karyopherin (importin) beta 1##DQ892863|KPNB1|3837|karyopherin (importin) beta 1##DQ896112|KPNB1|3837|karyopherin (importin) beta 1##BT009797|KPNB1|3837|karyopherin (importin) beta 1	0.2041	
chr9	37027760	37027879	reg1001086.p1	5.081	+	TSC_hg19_v1_chr9_+_36572891 AK222811 AK296820 D79997 AK302374 AK293284 AK293423 AK300761 AK293447 AK309470 BC014039 NM_014791 AB183428 AK299164 AK300821 AB183427 AK301131	-454895	+	TSC_hg19_v1_chr9_-_36401191 NM_194330	-626644	-	TSC_hg19_v1_chr9_-_36400891 AK093480 AX748155 AF394047 NM_194328 NM_194332	-626922	-	TSC_hg19_v1_chr9_-_37034361 NM_016734	6597	-	TSC_hg19_v1_chr9_+_37079908 AK091718	52087	+	TSC_hg19_v1_chr9_+_37080004 BC032471 BC033624 BC080614 BC067112	52189	+	AK222811|MELK|9833|maternal embryonic leucine zipper kinase##AK296820|MELK|9833|maternal embryonic leucine zipper kinase##D79997|MELK|9833|maternal embryonic leucine zipper kinase##AK302374|MELK|9833|maternal embryonic leucine zipper kinase##AK293284|MELK|9833|maternal embryonic leucine zipper kinase##AK293423|MELK|9833|maternal embryonic leucine zipper kinase##AK300761|MELK|9833|maternal embryonic leucine zipper kinase##AK293447|MELK|9833|maternal embryonic leucine zipper kinase##AK309470|MELK|9833|maternal embryonic leucine zipper kinase##BC014039|MELK|9833|maternal embryonic leucine zipper kinase##NM_014791|MELK|9833|maternal embryonic leucine zipper kinase##AB183428|MELK|9833|maternal embryonic leucine zipper kinase##AK299164|MELK|9833|maternal embryonic leucine zipper kinase##AK300821|MELK|9833|maternal embryonic leucine zipper kinase##AB183427|MELK|9833|maternal embryonic leucine zipper kinase##AK301131|MELK|9833|maternal embryonic leucine zipper kinase##NM_194330|RNF38|152006|ring finger protein 38##AK093480|RNF38|152006|ring finger protein 38##AX748155|RNF38|152006|ring finger protein 38##AF394047|RNF38|152006|ring finger protein 38##NM_194328|RNF38|152006|ring finger protein 38##NM_194332|RNF38|152006|ring finger protein 38##NM_016734|PAX5|5079|paired box 5##AK091718|LOC100506710|100506710|endogenous Bornavirus-like nucleoprotein 2 pseudogene##BC032471|LOC100506710|100506710|endogenous Bornavirus-like nucleoprotein 2 pseudogene##BC033624|LOC100506710|100506710|endogenous Bornavirus-like nucleoprotein 2 pseudogene##BC080614|LOC100506710|100506710|endogenous Bornavirus-like nucleoprotein 2 pseudogene	1.043442	denovo_WM_21:-39:0.994
chrX	61913512	61913632	reg1001069.p1	5.072	+	EU446736 TSC_hg19_v1_chrX_-_57936884 BC059356 AK292686 AK122815 NM_007156	-3976613	-	TSC_hg19_v1_chrX_+_57618452 AK289766 AB384714	-4295112	+	NM_007157	-4295304	+	BC112360 TSC_hg19_v1_chrX_-_62571212 AK126931 AL833314 NM_001012968	657627	-	TSC_hg19_v1_chrX_-_62648209 BC048208 AK129670	734695	-	TSC_hg19_v1_chrX_-_62780938 AK001756 AL080202	867295	-	EU446736|ZXDA|7789|zinc finger, X-linked, duplicated A##BC059356|ZXDA|7789|zinc finger, X-linked, duplicated A##AK292686|ZXDA|7789|zinc finger, X-linked, duplicated A##AK122815|ZXDA|7789|zinc finger, X-linked, duplicated A##NM_007156|ZXDA|7789|zinc finger, X-linked, duplicated A##AK289766|ZXDB|158586|zinc finger, X-linked, duplicated B##NM_007157|ZXDB|158586|zinc finger, X-linked, duplicated B##BC112360|SPIN4|139886|spindlin family, member 4##AK126931|SPIN4|139886|spindlin family, member 4##AL833314|SPIN4|139886|spindlin family, member 4##NM_001012968|SPIN4|139886|spindlin family, member 4##BC048208|LOC92249|92249|uncharacterized LOC92249##AK129670|LOC92249|92249|uncharacterized LOC92249##AK001756|LOC92249|92249|uncharacterized LOC92249##AL080202|LOC92249|92249|uncharacterized LOC92249	0.0	
chr1	27191610	27191780	reg1000738.p1	5.069	+	BC023552 AF029082 NM_006142 TSC_hg19_v1_chr1_+_27189639 BC001550 BC000329 BC002995 BC000995 AB464718 M93010 DQ894162 CU674492 CR541905 CR541926	-2030	+	TSC_hg19_v1_chr1_+_27153178 BC066776 NM_032283	-38498	+	AK000484 AK225521 AK301626 NM_001202554 AK056539	-77014	+	CU675813 AY364261 TSC_hg19_v1_chr1_-_27216757 BC007815 BC008634 BC020272	24980	-	TSC_hg19_v1_chr1_-_27216775 AK022535 AY358864	25077	-	TSC_hg19_v1_chr1_-_27216794 AK001211 NM_018066	25131	-	BC023552|SFN|2810|stratifin##AF029082|SFN|2810|stratifin##NM_006142|SFN|2810|stratifin##BC001550|SFN|2810|stratifin##BC000329|SFN|2810|stratifin##BC002995|SFN|2810|stratifin##BC000995|SFN|2810|stratifin##M93010|SFN|2810|stratifin##DQ894162|SFN|2810|stratifin##CR541905|SFN|2810|stratifin##CR541926|SFN|2810|stratifin##BC066776|ZDHHC18|84243|zinc finger, DHHC-type containing 18##NM_032283|ZDHHC18|84243|zinc finger, DHHC-type containing 18##AK000484|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##AK225521|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##AK301626|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##NM_001202554|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##AK056539|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##AY364261|GPN2|54707|GPN-loop GTPase 2##BC007815|GPN2|54707|GPN-loop GTPase 2##BC008634|GPN2|54707|GPN-loop GTPase 2##BC020272|GPN2|54707|GPN-loop GTPase 2##AK022535|GPN2|54707|GPN-loop GTPase 2##AY358864|GPN2|54707|GPN-loop GTPase 2##AK001211|GPN2|54707|GPN-loop GTPase 2##NM_018066|GPN2|54707|GPN-loop GTPase 2	0.973906	denovo_WM_21:7:0.937
chr14	89882521	89882615	reg1000947.p2	5.063	+	TSC_hg19_v1_chr14_-_89878738 AB528050 CU675677 EU831970 EU832063	-3792	-	TSC_hg19_v1_chr14_+_89290970 AK315772 AK093891 AX748355 NM_144596 NM_198309 NM_198310 AK296077 AY366523 AY366524 AY373972 BC026351 BX248071 AK124675 BX161472 BC095433 AL833901 CU693230	-591575	+	BC150639 NM_183387 BC032685 TSC_hg19_v1_chr14_-_89259288	-623358	-	TSC_hg19_v1_chr14_-_89883455 BC007506 NM_005197	842	-	TSC_hg19_v1_chr14_-_90085494 AK225967 AK308053 NM_001085471	203027	-	BC001787 BX247991 AK298930 AK094740 NM_145231	538492	-	EU831970|FOXN3|1112|forkhead box N3##EU832063|FOXN3|1112|forkhead box N3##AK315772|TTC8|123016|tetratricopeptide repeat domain 8##AK093891|TTC8|123016|tetratricopeptide repeat domain 8##NM_144596|TTC8|123016|tetratricopeptide repeat domain 8##NM_198309|TTC8|123016|tetratricopeptide repeat domain 8##NM_198310|TTC8|123016|tetratricopeptide repeat domain 8##AK296077|TTC8|123016|tetratricopeptide repeat domain 8##AY366523|TTC8|123016|tetratricopeptide repeat domain 8##AY366524|TTC8|123016|tetratricopeptide repeat domain 8##AY373972|TTC8|123016|tetratricopeptide repeat domain 8##BC026351|TTC8|123016|tetratricopeptide repeat domain 8##BX248071|TTC8|123016|tetratricopeptide repeat domain 8##AK124675|TTC8|123016|tetratricopeptide repeat domain 8##BX161472|TTC8|123016|tetratricopeptide repeat domain 8##BC095433|TTC8|123016|tetratricopeptide repeat domain 8##AL833901|TTC8|123016|tetratricopeptide repeat domain 8##BC150639|EML5|161436|echinoderm microtubule associated protein like 5##NM_183387|EML5|161436|echinoderm microtubule associated protein like 5##BC032685|EML5|161436|echinoderm microtubule associated protein like 5##BC007506|FOXN3|1112|forkhead box N3##NM_005197|FOXN3|1112|forkhead box N3##AK225967|FOXN3|1112|forkhead box N3##AK308053|FOXN3|1112|forkhead box N3##NM_001085471|FOXN3|1112|forkhead box N3##BC001787|EFCAB11|90141|EF-hand calcium binding domain 11##BX247991|EFCAB11|90141|EF-hand calcium binding domain 11##AK298930|EFCAB11|90141|EF-hand calcium binding domain 11##AK094740|EFCAB11|90141|EF-hand calcium binding domain 11##NM_145231|EFCAB11|90141|EF-hand calcium binding domain 11	1.426248	denovo_WM_21:-15:0.554	denovo_WM_21:109:0.872
chr2	7521510	7521581	reg1001863.p1	5.059	+	TSC_hg19_v1_chr2_+_7057585 NM_014746 BC050373 AK293854 D79983	-463958	+	NM_080657 AK312670 AF442151 BC017969 TSC_hg19_v1_chr2_+_7017907 DQ891977 DQ895168 CU676130	-503682	+	TSC_hg19_v1_chr2_-_7006650 AK308509	-514842	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	1300658	+	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	1456174	-	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	1622276	-	NM_014746|RNF144A|9781|ring finger protein 144A##BC050373|RNF144A|9781|ring finger protein 144A##AK293854|RNF144A|9781|ring finger protein 144A##D79983|RNF144A|9781|ring finger protein 144A##NM_080657|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK312670|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AF442151|RSAD2|91543|radical S-adenosyl methionine domain containing 2##BC017969|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ891977|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ895168|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2	0.0	
chr1	249132260	249132390	reg1000987.p1	5.056	+	AY358453 TSC_hg19_v1_chr1_-_249120082 AK056382 NM_030645	-12217	-	NM_001004734 BC137188 BC137189	-286709	-	NM_001001824	-318141	-	TSC_hg19_v1_chr1_+_249132449 BC029310	132	+	TSC_hg19_v1_chr1_+_249132534 AK025954 NM_024836 AK298016	220	+	TSC_hg19_v1_chr1_+_249132593 BC068506 BC008872	321	+	AY358453|SH3BP5L|80851|SH3-binding domain protein 5-like##AK056382|SH3BP5L|80851|SH3-binding domain protein 5-like##NM_030645|SH3BP5L|80851|SH3-binding domain protein 5-like##NM_001004734|OR14I1|401994|olfactory receptor, family 14, subfamily I, member 1##BC137188|OR14I1|401994|olfactory receptor, family 14, subfamily I, member 1##BC137189|OR14I1|401994|olfactory receptor, family 14, subfamily I, member 1##NM_001001824|OR2T27|403239|olfactory receptor, family 2, subfamily T, member 27##BC029310|ZNF672|79894|zinc finger protein 672##AK025954|ZNF672|79894|zinc finger protein 672##NM_024836|ZNF672|79894|zinc finger protein 672##AK298016|ZNF672|79894|zinc finger protein 672##BC068506|ZNF672|79894|zinc finger protein 672##BC008872|ZNF672|79894|zinc finger protein 672	0.237106	denovo_WM_21:-35:0.237
chr19	11849795	11849932	reg1000934.p1	5.054	+	X51760 BC052597 AK308189 NM_001080493 AK300579 AK303213	-105	-	NM_145295 BC098416 AK095639 BC006279 AK074846 BC069232	-141572	+	BC111014 TSC_hg19_v1_chr19_-_11689776 AK307164 NM_001111035 NM_001111036	-160081	-	NM_152355 TSC_hg19_v1_chr19_+_11877884 AK095956	27997	+	AK297479 NM_152356 AK096593	59516	+	TSC_hg19_v1_chr19_+_11925098 AK095252 NM_152357 BC035760	75243	+	X51760|ZNF823|55552|zinc finger protein 823##BC052597|ZNF823|55552|zinc finger protein 823##AK308189|ZNF823|55552|zinc finger protein 823##NM_001080493|ZNF823|55552|zinc finger protein 823##AK300579|ZNF823|55552|zinc finger protein 823##AK303213|ZNF823|55552|zinc finger protein 823##NM_145295|ZNF627|199692|zinc finger protein 627##BC098416|ZNF627|199692|zinc finger protein 627##AK095639|ZNF627|199692|zinc finger protein 627##BC006279|ZNF627|199692|zinc finger protein 627##AK074846|ZNF627|199692|zinc finger protein 627##BC069232|ZNF627|199692|zinc finger protein 627##BC111014|ACP5|54|acid phosphatase 5, tartrate resistant##AK307164|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001111035|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001111036|ACP5|54|acid phosphatase 5, tartrate resistant##NM_152355|ZNF441|126068|zinc finger protein 441##AK095956|ZNF441|126068|zinc finger protein 441##AK297479|ZNF491|126069|zinc finger protein 491##NM_152356|ZNF491|126069|zinc finger protein 491##AK096593|ZNF491|126069|zinc finger protein 491##AK095252|ZNF440|126070|zinc finger protein 440##NM_152357|ZNF440|126070|zinc finger protein 440##BC035760|ZNF440|126070|zinc finger protein 440	0.847964	denovo_WM_21:-3:0.848
chr1	9749350	9749459	reg1000740.p2	5.054	+	TSC_hg19_v1_chr1_+_9711801 AK314191 NM_005026 U86453 Y10055 BC030263	-37600	+	BC137291 NM_001010866 NM_001130924 TSC_hg19_v1_chr1_+_9648968 BC121187	-100448	+	TSC_hg19_v1_chr1_+_9599547 BC004991 AF495714	-149768	+	AB587312 AY753301 DQ891263 DQ894450 AK289798 TSC_hg19_v1_chr1_-_9883992	134491	-	TSC_hg19_v1_chr1_-_9884023 AK304813	134617	-	TSC_hg19_v1_chr1_-_9884024 BC033902	134640	-	AK314191|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##NM_005026|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##U86453|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##Y10055|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##BC030263|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##BC137291|TMEM201|199953|transmembrane protein 201##NM_001010866|TMEM201|199953|transmembrane protein 201##NM_001130924|TMEM201|199953|transmembrane protein 201##BC121187|TMEM201|199953|transmembrane protein 201##BC004991|SLC25A33|84275|solute carrier family 25, member 33##AF495714|SLC25A33|84275|solute carrier family 25, member 33##AY753301|CLSTN1|22883|calsyntenin 1##DQ891263|CLSTN1|22883|calsyntenin 1##DQ894450|CLSTN1|22883|calsyntenin 1##AK289798|CLSTN1|22883|calsyntenin 1##AK304813|CLSTN1|22883|calsyntenin 1##BC033902|CLSTN1|22883|calsyntenin 1	0.0	
chr11	54961088	54961173	reg1000856.p1	5.053	+	NM_001004703	-3445849	+	BC140750 NM_001005272	-3548683	-	BC136850 BC136851 NM_001005270	-4957060	-	AF521869 BC001862 NM_024114	68527	+	BC140748 NM_001005274	149521	+	NM_001005275	174229	+	NM_001004703|OR4C46|119749|olfactory receptor, family 4, subfamily C, member 46##BC140750|OR4A5|81318|olfactory receptor, family 4, subfamily A, member 5##NM_001005272|OR4A5|81318|olfactory receptor, family 4, subfamily A, member 5##BC136850|OR4C12|283093|olfactory receptor, family 4, subfamily C, member 12##BC136851|OR4C12|283093|olfactory receptor, family 4, subfamily C, member 12##NM_001005270|OR4C12|283093|olfactory receptor, family 4, subfamily C, member 12##AF521869|TRIM48|79097|tripartite motif containing 48##BC001862|TRIM48|79097|tripartite motif containing 48##NM_024114|TRIM48|79097|tripartite motif containing 48##BC140748|OR4A16|81327|olfactory receptor, family 4, subfamily A, member 16##NM_001005274|OR4A16|81327|olfactory receptor, family 4, subfamily A, member 16##NM_001005275|OR4A15|81328|olfactory receptor, family 4, subfamily A, member 15	0.0	
chr11	3818790	3818891	reg1000536.p1	5.052	+	TSC_hg19_v1_chr11_-_3818785 AF231130 U41815 AK292882 BC041136 AB038155 AB040538 AK301512	-80	-	TSC_hg19_v1_chr11_-_3818730 AF071076 AF071077	-121	-	TSC_hg19_v1_chr11_-_3803317 EF071958	-15512	-	TSC_hg19_v1_chr11_-_3819023 NM_005387 NM_016320 NM_139131 NM_139132	161	-	AL096753 NM_001145438 TSC_hg19_v1_chr11_+_3819145 AK307359 AK308525 AK292181 BC009930 AK301991	245	+	NM_014489 AF159615	10934	+	AF231130|NUP98|4928|nucleoporin 98kDa##U41815|NUP98|4928|nucleoporin 98kDa##AK292882|NUP98|4928|nucleoporin 98kDa##BC041136|NUP98|4928|nucleoporin 98kDa##AB040538|NUP98|4928|nucleoporin 98kDa##AK301512|NUP98|4928|nucleoporin 98kDa##AF071076|NUP98|4928|nucleoporin 98kDa##AF071077|NUP98|4928|nucleoporin 98kDa##EF071958|NUP98|4928|nucleoporin 98kDa##NM_005387|NUP98|4928|nucleoporin 98kDa##NM_016320|NUP98|4928|nucleoporin 98kDa##NM_139131|NUP98|4928|nucleoporin 98kDa##NM_139132|NUP98|4928|nucleoporin 98kDa##AL096753|PGAP2|27315|post-GPI attachment to proteins 2##NM_001145438|PGAP2|27315|post-GPI attachment to proteins 2##AK307359|PGAP2|27315|post-GPI attachment to proteins 2##AK292181|PGAP2|27315|post-GPI attachment to proteins 2##BC009930|PGAP2|27315|post-GPI attachment to proteins 2##AK301991|PGAP2|27315|post-GPI attachment to proteins 2##NM_014489|PGAP2|27315|post-GPI attachment to proteins 2##AF159615|PGAP2|27315|post-GPI attachment to proteins 2	0.0	
chr1	113932880	113932986	reg1001117.p1	5.051	+	TSC_hg19_v1_chr1_+_113615865 BC117368 BC117370 AB527394	-316987	+	TSC_hg19_v1_chr1_+_113615809 AK291031 CR936669 AB018349 NM_014813 AL161998	-317118	+	TSC_hg19_v1_chr1_+_113499054 BC023568 BC047723 BC062295 BX648855	-433900	+	BC130409 BC144144 NM_001142782 NM_152900	541	+	TSC_hg19_v1_chr1_-_114301772 NM_006608	368838	-	TSC_hg19_v1_chr1_-_114302096 BC002447	369207	-	BC117368|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##BC117370|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##AK291031|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##CR936669|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##AB018349|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##NM_014813|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##AL161998|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##BC062295|LOC100506392|100506392|uncharacterized LOC100506392##BX648855|LOC100506392|100506392|uncharacterized LOC100506392##BC130409|MAGI3|260425|membrane associated guanylate kinase, WW and PDZ domain containing 3##BC144144|MAGI3|260425|membrane associated guanylate kinase, WW and PDZ domain containing 3##NM_001142782|MAGI3|260425|membrane associated guanylate kinase, WW and PDZ domain containing 3##NM_152900|MAGI3|260425|membrane associated guanylate kinase, WW and PDZ domain containing 3##NM_006608|PHTF1|10745|putative homeodomain transcription factor 1##BC002447|PHTF1|10745|putative homeodomain transcription factor 1	0.037846	
chr16	77224768	77224896	reg1000207.p2	5.051	+	NM_138994 AK057327 BC017266	-881077	+	AB051550 NM_033401 TSC_hg19_v1_chr16_+_76311298	-913592	+	AK307901 NM_018975 TSC_hg19_v1_chr16_+_75681715 AK000669 BC022428 BC004465 BC005841 BC016739 BC078171 AF289599 AF250393 AB464292 CU678732 AF262988	-1543125	+	TSC_hg19_v1_chr16_+_77224857 BC024277 NM_014940	10	+	AK023374 TSC_hg19_v1_chr16_+_77224865	53	+	TSC_hg19_v1_chr16_+_77225092 AK023896 AK296467	242	+	NM_138994|CNTNAP4|85445|contactin associated protein-like 4##AK057327|CNTNAP4|85445|contactin associated protein-like 4##BC017266|CNTNAP4|85445|contactin associated protein-like 4##AB051550|CNTNAP4|85445|contactin associated protein-like 4##NM_033401|CNTNAP4|85445|contactin associated protein-like 4##AK307901|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##NM_018975|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AK000669|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC022428|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC004465|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC005841|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC016739|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC078171|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AF289599|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AF250393|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AF262988|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC024277|MON1B|22879|MON1 homolog B (yeast)##NM_014940|MON1B|22879|MON1 homolog B (yeast)##AK023374|MON1B|22879|MON1 homolog B (yeast)##AK023896|MON1B|22879|MON1 homolog B (yeast)##AK296467|MON1B|22879|MON1 homolog B (yeast)	0.414056	denovo_WM_21:-82:0.381
chr19	4153482	4153597	reg1001095.p1	5.050	+	TSC_hg19_v1_chr19_-_4124145 BC000471 NM_030662	-29406	-	AB463893 DQ893601 DQ895060 L11285 BC018645 TSC_hg19_v1_chr19_-_4124114 BX538081	-29547	-	TSC_hg19_v1_chr19_-_4103205 AK093125	-50327	-	TSC_hg19_v1_chr19_+_4153636 AK313099 AB050902 AK172839 NM_032607 AB073612 BC101504 BC143609 BC143610 BC101508 EU446882	128	+	TSC_hg19_v1_chr19_-_4182561 DQ896358 EU176413 AB528632 CR457200 CU678868 BC005026 BC000090 BC004218 AK299420 BC028220 AK293348 AK315048 AK301247 AK074810 AK225567 AF233396 NM_001193285 NM_016539	29006	-	NM_133475	29811	+	BC000471|MAP2K2|5605|mitogen-activated protein kinase kinase 2##NM_030662|MAP2K2|5605|mitogen-activated protein kinase kinase 2##DQ893601|MAP2K2|5605|mitogen-activated protein kinase kinase 2##DQ895060|MAP2K2|5605|mitogen-activated protein kinase kinase 2##L11285|MAP2K2|5605|mitogen-activated protein kinase kinase 2##BC018645|MAP2K2|5605|mitogen-activated protein kinase kinase 2##BX538081|MAP2K2|5605|mitogen-activated protein kinase kinase 2##AK093125|MAP2K2|5605|mitogen-activated protein kinase kinase 2##AK313099|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##AB050902|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##AK172839|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##NM_032607|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##AB073612|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##BC101504|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##BC143609|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##BC143610|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##BC101508|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##EU446882|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##DQ896358|SIRT6|51548|sirtuin 6##EU176413|SIRT6|51548|sirtuin 6##CR457200|SIRT6|51548|sirtuin 6##BC005026|SIRT6|51548|sirtuin 6##BC004218|SIRT6|51548|sirtuin 6##AK299420|SIRT6|51548|sirtuin 6##BC028220|SIRT6|51548|sirtuin 6##AK293348|SIRT6|51548|sirtuin 6##AK315048|SIRT6|51548|sirtuin 6##AK301247|SIRT6|51548|sirtuin 6##AK074810|SIRT6|51548|sirtuin 6##AK225567|SIRT6|51548|sirtuin 6##AF233396|SIRT6|51548|sirtuin 6##NM_001193285|SIRT6|51548|sirtuin 6##NM_016539|SIRT6|51548|sirtuin 6##NM_133475|ANKRD24|170961|ankyrin repeat domain 24	0.243441	denovo_WM_21:27:0.243
chr17	76183176	76183285	reg1001234.p1	5.040	+	AB451268 AB451395 BT006941 AB591021 BC007872 BC007986 BC006484 AK314950 K02581 TSC_hg19_v1_chr17_-_76183133 NM_003258	-51	-	TSC_hg19_v1_chr17_+_76164661 AJ002308 AY358916 NM_004710 BC000407 BC105992 BC029755 DQ891832 DQ895019	-18570	+	AY358510 NM_001163075	-40797	+	BC132824 NM_001010982 NM_001145526 TSC_hg19_v1_chr17_+_76183442 BC020920 BC142973 BX647783 BX648442 EU832465 EU832546 HQ258157	193	+	NM_001012270 NM_001012271 NM_001168 TSC_hg19_v1_chr17_+_76210320 AK301793	27069	+	TSC_hg19_v1_chr17_+_76210353 AK223428 BC000784 BC034148 AY927772 BC002388 BC008718 HM625836 AB028869 AF077350 AK311917 BC065497 AB590059 AM393128 AB154416 AY830084 CR541740 DQ227257 DQ310375 DQ310376 DQ310377 DQ310378 DQ310379 DQ508249 DQ508245 DQ508246 DQ508247 DQ508248	27167	+	AB451268|TK1|7083|thymidine kinase 1, soluble##AB451395|TK1|7083|thymidine kinase 1, soluble##BT006941|TK1|7083|thymidine kinase 1, soluble##BC007872|TK1|7083|thymidine kinase 1, soluble##BC007986|TK1|7083|thymidine kinase 1, soluble##BC006484|TK1|7083|thymidine kinase 1, soluble##AK314950|TK1|7083|thymidine kinase 1, soluble##K02581|TK1|7083|thymidine kinase 1, soluble##NM_003258|TK1|7083|thymidine kinase 1, soluble##AJ002308|SYNGR2|9144|synaptogyrin 2##AY358916|SYNGR2|9144|synaptogyrin 2##NM_004710|SYNGR2|9144|synaptogyrin 2##BC000407|SYNGR2|9144|synaptogyrin 2##BC105992|SYNGR2|9144|synaptogyrin 2##BC029755|SYNGR2|9144|synaptogyrin 2##DQ891832|SYNGR2|9144|synaptogyrin 2##DQ895019|SYNGR2|9144|synaptogyrin 2##AY358510|C17orf99|100141515|chromosome 17 open reading frame 99##NM_001163075|C17orf99|100141515|chromosome 17 open reading frame 99##BC132824|AFMID|125061|arylformamidase##NM_001010982|AFMID|125061|arylformamidase##NM_001145526|AFMID|125061|arylformamidase##BC020920|AFMID|125061|arylformamidase##BC142973|AFMID|125061|arylformamidase##BX648442|AFMID|125061|arylformamidase##EU832465|AFMID|125061|arylformamidase##EU832546|AFMID|125061|arylformamidase##HQ258157|AFMID|125061|arylformamidase##NM_001012270|BIRC5|332|baculoviral IAP repeat containing 5##NM_001012271|BIRC5|332|baculoviral IAP repeat containing 5##NM_001168|BIRC5|332|baculoviral IAP repeat containing 5##AK301793|BIRC5|332|baculoviral IAP repeat containing 5##AK223428|BIRC5|332|baculoviral IAP repeat containing 5##BC000784|BIRC5|332|baculoviral IAP repeat containing 5##BC034148|BIRC5|332|baculoviral IAP repeat containing 5##AY927772|BIRC5|332|baculoviral IAP repeat containing 5##BC008718|BIRC5|332|baculoviral IAP repeat containing 5##HM625836|BIRC5|332|baculoviral IAP repeat containing 5##AB028869|BIRC5|332|baculoviral IAP repeat containing 5##AF077350|BIRC5|332|baculoviral IAP repeat containing 5##AK311917|BIRC5|332|baculoviral IAP repeat containing 5##BC065497|BIRC5|332|baculoviral IAP repeat containing 5##AM393128|BIRC5|332|baculoviral IAP repeat containing 5##AB154416|BIRC5|332|baculoviral IAP repeat containing 5##AY830084|BIRC5|332|baculoviral IAP repeat containing 5##CR541740|BIRC5|332|baculoviral IAP repeat containing 5##DQ227257|BIRC5|332|baculoviral IAP repeat containing 5##DQ310375|BIRC5|332|baculoviral IAP repeat containing 5##DQ310376|BIRC5|332|baculoviral IAP repeat containing 5##DQ310377|BIRC5|332|baculoviral IAP repeat containing 5##DQ310378|BIRC5|332|baculoviral IAP repeat containing 5##DQ310379|BIRC5|332|baculoviral IAP repeat containing 5##DQ508249|BIRC5|332|baculoviral IAP repeat containing 5##DQ508245|BIRC5|332|baculoviral IAP repeat containing 5##DQ508246|BIRC5|332|baculoviral IAP repeat containing 5##DQ508247|BIRC5|332|baculoviral IAP repeat containing 5##DQ508248|BIRC5|332|baculoviral IAP repeat containing 5	1.439683	denovo_WM_21:-20:0.934	denovo_WM_21:-51:0.506
chrX	73070881	73071017	reg1000931.p1	5.035	+	TSC_hg19_v1_chrX_+_72783126 AB529212 AK297768 BC050300 AL832095	-287723	+	TSC_hg19_v1_chrX_+_72783043 CR936642 BC127727 BC127728 BC136691 BC136692	-287894	+	TSC_hg19_v1_chrX_+_72782961 AK295903 NM_001039840	-287977	+	BC071776 TSC_hg19_v1_chrX_+_73164176 AK056172	93220	+	TSC_hg19_v1_chrX_-_73512419 AK057701	441456	-	TSC_hg19_v1_chrX_-_73513379 AK311345	442425	-	AK297768|CHIC1|53344|cysteine-rich hydrophobic domain 1##BC050300|CHIC1|53344|cysteine-rich hydrophobic domain 1##AL832095|CHIC1|53344|cysteine-rich hydrophobic domain 1##CR936642|CHIC1|53344|cysteine-rich hydrophobic domain 1##BC127727|CHIC1|53344|cysteine-rich hydrophobic domain 1##BC127728|CHIC1|53344|cysteine-rich hydrophobic domain 1##BC136691|CHIC1|53344|cysteine-rich hydrophobic domain 1##BC136692|CHIC1|53344|cysteine-rich hydrophobic domain 1##AK295903|CHIC1|53344|cysteine-rich hydrophobic domain 1##NM_001039840|CHIC1|53344|cysteine-rich hydrophobic domain 1##BC071776|JPX|554203|JPX transcript, XIST activator (non-protein coding)##AK056172|JPX|554203|JPX transcript, XIST activator (non-protein coding)##AK057701|FTX|100302692|FTX transcript, XIST regulator (non-protein coding)##AK311345|FTX|100302692|FTX transcript, XIST regulator (non-protein coding)	1.530105	denovo_WM_21:13:0.710	denovo_WM_21:-18:0.820
chr6	144416756	144416870	reg1001083.p1	5.031	+	NM_031287 TSC_hg19_v1_chr6_-_144416757	-51	-	AB528231 AM393071 BC000198 TSC_hg19_v1_chr6_-_144416703 AK312079 AK074417	-142	-	EF100438 EF100439 EF100440 EF100441 EF100442 EF100443 EF100444 EF100445 TSC_hg19_v1_chr6_-_144385724 NM_001080951 NM_001080955	-31123	-	TSC_hg19_v1_chr6_+_144471653 NM_003764 AF044309 BC033519 AF071504	54908	+	TSC_hg19_v1_chr6_+_144607461 AK292506	190667	+	NM_007124 X69086	196105	+	NM_031287|SF3B5|83443|splicing factor 3b, subunit 5, 10kDa##AM393071|SF3B5|83443|splicing factor 3b, subunit 5, 10kDa##BC000198|SF3B5|83443|splicing factor 3b, subunit 5, 10kDa##AK312079|SF3B5|83443|splicing factor 3b, subunit 5, 10kDa##AK074417|SF3B5|83443|splicing factor 3b, subunit 5, 10kDa##EF100438|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100439|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100440|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100441|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100442|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100443|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100444|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100445|PLAGL1|5325|pleiomorphic adenoma gene-like 1##NM_001080951|PLAGL1|5325|pleiomorphic adenoma gene-like 1##NM_001080955|PLAGL1|5325|pleiomorphic adenoma gene-like 1##NM_003764|STX11|8676|syntaxin 11##AF044309|STX11|8676|syntaxin 11##BC033519|STX11|8676|syntaxin 11##AF071504|STX11|8676|syntaxin 11##AK292506|UTRN|7402|utrophin##NM_007124|UTRN|7402|utrophin##X69086|UTRN|7402|utrophin	0.0	
chr14	24658091	24658243	reg1001333.p1	5.027	+	TSC_hg19_v1_chr14_-_24658018 AB208897 AK302097 AK094107 BC110804 AK095306 AK056527 AK057277 BC136759 BC144399 BC144400 NM_024658	-101	-	TSC_hg19_v1_chr14_-_24658004 AF411122 AK057044 AK056702 AK094897 AK314305 BX248267	-170	-	TSC_hg19_v1_chr14_+_24641288 AK001435 NM_001048205 NM_005132 BC010887 AL832973	-16894	+	TSC_hg19_v1_chr14_-_24664634 AK292110	6479	-	TSC_hg19_v1_chr14_-_24664891 BX161494 AK304642 BX161390 NM_001014842 NM_006405	6681	-	BC029918 AK131042 NM_001184739 NM_174944 BC111088 AY461663	16764	+	AB208897|IPO4|79711|importin 4##AK302097|IPO4|79711|importin 4##AK094107|IPO4|79711|importin 4##BC110804|IPO4|79711|importin 4##AK095306|IPO4|79711|importin 4##AK056527|IPO4|79711|importin 4##AK057277|IPO4|79711|importin 4##BC136759|IPO4|79711|importin 4##BC144399|IPO4|79711|importin 4##BC144400|IPO4|79711|importin 4##NM_024658|IPO4|79711|importin 4##AF411122|IPO4|79711|importin 4##AK057044|IPO4|79711|importin 4##AK056702|IPO4|79711|importin 4##AK094897|IPO4|79711|importin 4##AK314305|IPO4|79711|importin 4##BX248267|IPO4|79711|importin 4##AK001435|REC8|9985|REC8 homolog (yeast)##NM_001048205|REC8|9985|REC8 homolog (yeast)##NM_005132|REC8|9985|REC8 homolog (yeast)##BC010887|REC8|9985|REC8 homolog (yeast)##AL832973|REC8|9985|REC8 homolog (yeast)##AK292110|TM9SF1|10548|transmembrane 9 superfamily member 1##BX161494|TM9SF1|10548|transmembrane 9 superfamily member 1##AK304642|TM9SF1|10548|transmembrane 9 superfamily member 1##BX161390|TM9SF1|10548|transmembrane 9 superfamily member 1##NM_001014842|TM9SF1|10548|transmembrane 9 superfamily member 1##NM_006405|TM9SF1|10548|transmembrane 9 superfamily member 1##BC029918|TSSK4|283629|testis-specific serine kinase 4##AK131042|TSSK4|283629|testis-specific serine kinase 4##NM_001184739|TSSK4|283629|testis-specific serine kinase 4##NM_174944|TSSK4|283629|testis-specific serine kinase 4##BC111088|TSSK4|283629|testis-specific serine kinase 4##AY461663|TSSK4|283629|testis-specific serine kinase 4	0.0	
chr6	28048664	28048793	reg1001231.p1	5.024	+	NM_003447	-247	+	BC109251 BC110457 NM_012367	-123710	+	BC136881 BC136901 NM_033057	-168555	-	AK025844 AK294017 AK309837 NM_025231 TSC_hg19_v1_chr6_+_28092406 BC004255	43671	+	TSC_hg19_v1_chr6_-_28104623 AK309286 BC043177	55870	-	TSC_hg19_v1_chr6_+_28109660 AB208793 BC096282 BC096283 BC096284 BC130032 NM_006298 U57796	60963	+	NM_003447|ZNF165|7718|zinc finger protein 165##BC109251|OR2B6|26212|olfactory receptor, family 2, subfamily B, member 6##BC110457|OR2B6|26212|olfactory receptor, family 2, subfamily B, member 6##NM_012367|OR2B6|26212|olfactory receptor, family 2, subfamily B, member 6##BC136881|OR2B2|81697|olfactory receptor, family 2, subfamily B, member 2##BC136901|OR2B2|81697|olfactory receptor, family 2, subfamily B, member 2##NM_033057|OR2B2|81697|olfactory receptor, family 2, subfamily B, member 2##AK025844|ZSCAN16|80345|zinc finger and SCAN domain containing 16##AK294017|ZSCAN16|80345|zinc finger and SCAN domain containing 16##AK309837|ZSCAN16|80345|zinc finger and SCAN domain containing 16##NM_025231|ZSCAN16|80345|zinc finger and SCAN domain containing 16##BC004255|ZSCAN16|80345|zinc finger and SCAN domain containing 16##AK309286|LOC100129195|100129195|uncharacterized LOC100129195##BC043177|LOC100129195|100129195|uncharacterized LOC100129195##AB208793|ZNF192|7745|zinc finger protein 192##BC096282|ZNF192|7745|zinc finger protein 192##BC096283|ZNF192|7745|zinc finger protein 192##BC096284|ZNF192|7745|zinc finger protein 192##BC130032|ZNF192|7745|zinc finger protein 192##NM_006298|ZNF192|7745|zinc finger protein 192##U57796|ZNF192|7745|zinc finger protein 192	0.016512	
chr9	131798726	131798858	reg1000933.p2	5.021	+	EU832345 EU832430 TSC_hg19_v1_chr9_-_131790591 AF257319 AF258589 AB058751 BC014635 NM_020145	-8260	-	TSC_hg19_v1_chr9_+_131709992 BX537774 D79991	-88781	+	TSC_hg19_v1_chr9_+_131709977 NM_015354	-88812	+	TSC_hg19_v1_chr9_+_131798900 AK074127 AK075421 AK301241	138	+	AK303036 BC009114 NM_032809	440	+	TSC_hg19_v1_chr9_+_131843403 AY189675 AK290713 NM_001135917 NM_020438 BC067858 AK293627 BC033686 BC022553 BC009493 BC040152	44603	+	EU832345|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##EU832430|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##AF257319|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##AF258589|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##AB058751|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##BC014635|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##NM_020145|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##BX537774|NUP188|23511|nucleoporin 188kDa##D79991|NUP188|23511|nucleoporin 188kDa##NM_015354|NUP188|23511|nucleoporin 188kDa##AK074127|FAM73B|84895|family with sequence similarity 73, member B##AK075421|FAM73B|84895|family with sequence similarity 73, member B##AK301241|FAM73B|84895|family with sequence similarity 73, member B##AK303036|FAM73B|84895|family with sequence similarity 73, member B##BC009114|FAM73B|84895|family with sequence similarity 73, member B##NM_032809|FAM73B|84895|family with sequence similarity 73, member B##AY189675|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##AK290713|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##NM_001135917|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##NM_020438|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##BC067858|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##AK293627|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##BC033686|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##BC022553|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##BC009493|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##BC040152|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1	1.018955	denovo_WM_21:57:0.860
chr11	68227842	68227965	reg1000404.p1	5.018	+	AF088027 TSC_hg19_v1_chr11_+_68115450	-112467	+	TSC_hg19_v1_chr11_+_68080058 AB017498 NM_002335 AF077820 AF064548 BC150595 BC098397	-147814	+	TSC_hg19_v1_chr11_-_68039453 NM_022338	-188445	-	TSC_hg19_v1_chr11_+_68228219 NM_001164160 NM_001164161 NM_001164162 NM_001164163 NM_001164164 NM_018312 BC070121 AK298180 AK303315 AK315136 CR936718 CR749815 CR933658 AB046778	306	+	AK001920 TSC_hg19_v1_chr11_+_68367929	139973	+	TSC_hg19_v1_chr11_+_68451978 NM_015973	224080	+	AF088027|LRP5|4041|low density lipoprotein receptor-related protein 5##AB017498|LRP5|4041|low density lipoprotein receptor-related protein 5##NM_002335|LRP5|4041|low density lipoprotein receptor-related protein 5##AF077820|LRP5|4041|low density lipoprotein receptor-related protein 5##AF064548|LRP5|4041|low density lipoprotein receptor-related protein 5##BC150595|LRP5|4041|low density lipoprotein receptor-related protein 5##BC098397|LRP5|4041|low density lipoprotein receptor-related protein 5##NM_022338|C11orf24|53838|chromosome 11 open reading frame 24##NM_001164160|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164161|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164162|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164163|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164164|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_018312|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##BC070121|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK298180|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK303315|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK315136|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR936718|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR749815|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR933658|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AB046778|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK001920|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_015973|GAL|51083|galanin prepropeptide	0.179402	
chr17	74722683	74722825	reg1001232.p1	5.015	+	TSC_hg19_v1_chr17_-_74722680 BC047003 AK294816	-40	-	TSC_hg19_v1_chr17_-_74722636 AK021780	-111	-	TSC_hg19_v1_chr17_-_74722619 AK314541	-138	-	TSC_hg19_v1_chr17_-_74722857 EF527406 EF527407 NM_001081461 NM_015167	107	-	TSC_hg19_v1_chr17_+_74722935 NM_001080510 NM_001206983 NM_001206984 NM_001206985 NM_001206986 NM_001206987 BC033998 BC045819 BC106939	215	+	TSC_hg19_v1_chr17_+_74732715 AF015190 NM_001242534 AF015186 AF015187	10027	+	BC047003|JMJD6|23210|jumonji domain containing 6##AK294816|JMJD6|23210|jumonji domain containing 6##AK021780|JMJD6|23210|jumonji domain containing 6##AK314541|JMJD6|23210|jumonji domain containing 6##EF527406|JMJD6|23210|jumonji domain containing 6##EF527407|JMJD6|23210|jumonji domain containing 6##NM_001081461|JMJD6|23210|jumonji domain containing 6##NM_015167|JMJD6|23210|jumonji domain containing 6##NM_001080510|METTL23|124512|methyltransferase like 23##NM_001206983|METTL23|124512|methyltransferase like 23##NM_001206984|METTL23|124512|methyltransferase like 23##NM_001206985|METTL23|124512|methyltransferase like 23##NM_001206986|METTL23|124512|methyltransferase like 23##NM_001206987|METTL23|124512|methyltransferase like 23##BC033998|METTL23|124512|methyltransferase like 23##BC045819|METTL23|124512|methyltransferase like 23##BC106939|METTL23|124512|methyltransferase like 23##AF015190|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242534|MFSD11|79157|major facilitator superfamily domain containing 11##AF015186|MFSD11|79157|major facilitator superfamily domain containing 11##AF015187|MFSD11|79157|major facilitator superfamily domain containing 11	0.839039	denovo_WM_21:37:0.839
chr6_qbl_hap6	3407114	3407202	reg1000531.p2	5.010	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.391695	
chr15	70392005	70392163	reg1000918.p1	5.007	+	TSC_hg19_v1_chr15_-_70390231 BC012004 AB046767 AK315058 BC043247 NM_001105192 NM_005078 NM_020908	-1841	-	BC015729 TSC_hg19_v1_chr15_-_70390227 AK304459	-1857	-	BC015421 TSC_hg19_v1_chr15_-_70341948	-50175	-	TSC_hg19_v1_chr15_-_70878946 BC040579	486860	-	BC016881 AL834243 NM_001008224 AK055435	602543	-	AB046781 BC113407 BC113409 BC143266 BC143267 TSC_hg19_v1_chr15_-_71055898 AF322916 NM_018003	663758	-	BC012004|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AB046767|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AK315058|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC043247|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_001105192|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_005078|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_020908|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC015729|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AK304459|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC015421|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC016881|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##AL834243|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##NM_001008224|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##AK055435|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##AB046781|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC113407|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC113409|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC143266|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC143267|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##AF322916|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##NM_018003|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats	0.368505	denovo_WM_21:-8:0.337
chr22	29999425	29999534	reg1000198.p2	5.004	+	AJ001258 NM_003634	-22154	-	BC002371 BC006473 TSC_hg19_v1_chr22_-_29977083 AK290953 AK098367 AK298816 NM_001202502 AK314407	-22384	-	NM_001002878 NM_001002879 BC003615 TSC_hg19_v1_chr22_-_29949699 AK025385 AB023200 AK225752 NM_001002877 NM_003678	-49782	-	NM_000268 NM_016418 NM_181825 NM_181828 NM_181829 NM_181830 NM_181831 NM_181832 NM_181833 TSC_hg19_v1_chr22_+_29999554	72	+	TSC_hg19_v1_chr22_+_29999565 AF369657 AF369658 AF369659 AF369660	103	+	AK297116 TSC_hg19_v1_chr22_+_29999605	126	+	AJ001258|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##NM_003634|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##BC002371|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##BC006473|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##AK290953|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##AK098367|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##AK298816|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##NM_001202502|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##AK314407|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##NM_001002878|THOC5|8563|THO complex 5##NM_001002879|THOC5|8563|THO complex 5##BC003615|THOC5|8563|THO complex 5##AK025385|THOC5|8563|THO complex 5##AB023200|THOC5|8563|THO complex 5##AK225752|THOC5|8563|THO complex 5##NM_001002877|THOC5|8563|THO complex 5##NM_003678|THOC5|8563|THO complex 5##NM_000268|NF2|4771|neurofibromin 2 (merlin)##NM_016418|NF2|4771|neurofibromin 2 (merlin)##NM_181825|NF2|4771|neurofibromin 2 (merlin)##NM_181828|NF2|4771|neurofibromin 2 (merlin)##NM_181829|NF2|4771|neurofibromin 2 (merlin)##NM_181830|NF2|4771|neurofibromin 2 (merlin)##NM_181831|NF2|4771|neurofibromin 2 (merlin)##NM_181832|NF2|4771|neurofibromin 2 (merlin)##NM_181833|NF2|4771|neurofibromin 2 (merlin)##AF369657|NF2|4771|neurofibromin 2 (merlin)##AF369658|NF2|4771|neurofibromin 2 (merlin)##AF369659|NF2|4771|neurofibromin 2 (merlin)##AF369660|NF2|4771|neurofibromin 2 (merlin)##AK297116|NF2|4771|neurofibromin 2 (merlin)	0.9592	denovo_WM_21:-36:0.894
chr22	21400072	21400195	reg1001155.p1	5.002	+	BC062565 AJ000730 BC008814 NM_004173 TSC_hg19_v1_chr22_-_21386851	-13282	-	BC064805 NM_001159554 AB002058 CR456535 BC109209 AB528202 CU013135 CU013423 AK309079 NM_005446 BC047287 BC063553 BC033488	-30673	+	TSC_hg19_v1_chr22_+_21356508 AK096901 BC065749	-43652	+	NM_001128633	337529	+	NM_001128635	337906	+	TSC_hg19_v1_chr22_+_21771661 AB028943 NM_015094	371543	+	BC062565|SLC7A4|6545|solute carrier family 7 (orphan transporter), member 4##AJ000730|SLC7A4|6545|solute carrier family 7 (orphan transporter), member 4##BC008814|SLC7A4|6545|solute carrier family 7 (orphan transporter), member 4##NM_004173|SLC7A4|6545|solute carrier family 7 (orphan transporter), member 4##BC064805|P2RX6|9127|purinergic receptor P2X, ligand-gated ion channel, 6##NM_001159554|P2RX6|9127|purinergic receptor P2X, ligand-gated ion channel, 6##AB002058|P2RX6|9127|purinergic receptor P2X, ligand-gated ion channel, 6##CR456535|P2RX6|9127|purinergic receptor P2X, ligand-gated ion channel, 6##BC109209|P2RX6|9127|purinergic receptor P2X, ligand-gated ion channel, 6##CU013135|P2RX6|9127|purinergic receptor P2X, ligand-gated ion channel, 6##CU013423|P2RX6|9127|purinergic receptor P2X, ligand-gated ion channel, 6##AK309079|P2RX6|9127|purinergic receptor P2X, ligand-gated ion channel, 6##NM_005446|P2RX6|9127|purinergic receptor P2X, ligand-gated ion channel, 6##BC047287|P2RX6|9127|purinergic receptor P2X, ligand-gated ion channel, 6##BC063553|P2RX6|9127|purinergic receptor P2X, ligand-gated ion channel, 6##BC033488|P2RX6|9127|purinergic receptor P2X, ligand-gated ion channel, 6##AK096901|THAP7-AS1|439931|THAP7 antisense RNA 1 (non-protein coding)##BC065749|THAP7-AS1|439931|THAP7 antisense RNA 1 (non-protein coding)##NM_001128633|RIMBP3C|150221|RIMS binding protein 3C##NM_001128635|RIMBP3B|440804|RIMS binding protein 3B##AB028943|HIC2|23119|hypermethylated in cancer 2##NM_015094|HIC2|23119|hypermethylated in cancer 2	0.291413	denovo_WM_21:-3:0.291
chr5	68462841	68462947	reg1000927.p1	4.998	+	NM_031966 TSC_hg19_v1_chr5_+_68462937	-4	+	TSC_hg19_v1_chr5_+_68389916 BC000808 BC130452 BC130454 BC144349 AB527379 AY089991 BX537394 EU831923 EU832017	-72895	+	AK292925 TSC_hg19_v1_chr5_+_68389913	-72981	+	AK289431 TSC_hg19_v1_chr5_+_68462976	70	+	TSC_hg19_v1_chr5_+_68463001 BC006510 M25753 AB590575 DQ892975 BT020128	143	+	BC048127 TSC_hg19_v1_chr5_-_68485309 AK130675 BC039391	22410	-	NM_031966|CCNB1|891|cyclin B1##BC000808|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##BC130452|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##BC130454|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##BC144349|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##AY089991|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##BX537394|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##EU831923|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##EU832017|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##AK292925|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##AK289431|CCNB1|891|cyclin B1##BC006510|CCNB1|891|cyclin B1##M25753|CCNB1|891|cyclin B1##DQ892975|CCNB1|891|cyclin B1##BT020128|CCNB1|891|cyclin B1	1.185594	denovo_WM_21:0:0.387	denovo_WM_21:31:0.799
chr7	127292084	127292208	reg1000903.p2	4.996	+	AB528989 EU446646 BC074761 BC107149 BC107150 AF043978 NM_006193	-36470	-	AF281049 NM_020369 AK225867 AK300518 AK301765 AK314050 BC035606 DQ892069 DQ895262 CU690130	-58349	+	NM_001662 TSC_hg19_v1_chr7_+_127228469 AK307297 AK308548 BC033104 M57567 AK297026 AK312107 BC003043 AB528679 AF493884 BT007087	-63668	+	TSC_hg19_v1_chr7_+_127292198 NM_014390	36	+	TSC_hg19_v1_chr7_+_127292236 AY273894 U22055	90	+	BC017180 TSC_hg19_v1_chr7_+_127292247 AK096583 AK304181 AK312313 AB209510 AB384959 DQ893632 DQ895529 BT009785	190	+	EU446646|PAX4|5078|paired box 4##BC074761|PAX4|5078|paired box 4##BC107149|PAX4|5078|paired box 4##BC107150|PAX4|5078|paired box 4##AF043978|PAX4|5078|paired box 4##NM_006193|PAX4|5078|paired box 4##AF281049|FSCN3|29999|fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)##NM_020369|FSCN3|29999|fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)##AK225867|FSCN3|29999|fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)##AK300518|FSCN3|29999|fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)##AK314050|FSCN3|29999|fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)##BC035606|FSCN3|29999|fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)##DQ892069|FSCN3|29999|fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)##DQ895262|FSCN3|29999|fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)##NM_001662|ARF5|381|ADP-ribosylation factor 5##AK307297|ARF5|381|ADP-ribosylation factor 5##AK308548|ARF5|381|ADP-ribosylation factor 5##BC033104|ARF5|381|ADP-ribosylation factor 5##M57567|ARF5|381|ADP-ribosylation factor 5##AK297026|ARF5|381|ADP-ribosylation factor 5##AK312107|ARF5|381|ADP-ribosylation factor 5##BC003043|ARF5|381|ADP-ribosylation factor 5##AF493884|ARF5|381|ADP-ribosylation factor 5##BT007087|ARF5|381|ADP-ribosylation factor 5##NM_014390|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AY273894|SND1|27044|staphylococcal nuclease and tudor domain containing 1##U22055|SND1|27044|staphylococcal nuclease and tudor domain containing 1##BC017180|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AK096583|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AK304181|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AK312313|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AB209510|SND1|27044|staphylococcal nuclease and tudor domain containing 1##DQ893632|SND1|27044|staphylococcal nuclease and tudor domain containing 1##DQ895529|SND1|27044|staphylococcal nuclease and tudor domain containing 1##BT009785|SND1|27044|staphylococcal nuclease and tudor domain containing 1	0.707182	denovo_WM_21:-3:0.707
chr10	97803205	97803304	reg1001254.p1	4.995	+	NM_001001732 NM_001159747 AK302377 BC075861	-43390	+	AK294399 NM_001130446	-135533	+	NM_001164178 NM_001164181 AK301459 AK298648 AK098278 NM_001164179 NM_001164182 NM_001164183 NM_001776	-287714	+	TSC_hg19_v1_chr10_+_97803318 BC043175 NM_001134375 NM_001134376 NM_019084 AK092360 AK297264 AX747499	127	+	CU692146 TSC_hg19_v1_chr10_+_97804165	905	+	TSC_hg19_v1_chr10_-_97849968 AK096469 AK091396	46705	-	NM_001001732|CC2D2B|387707|coiled-coil and C2 domain containing 2B##NM_001159747|CC2D2B|387707|coiled-coil and C2 domain containing 2B##AK302377|CC2D2B|387707|coiled-coil and C2 domain containing 2B##BC075861|CC2D2B|387707|coiled-coil and C2 domain containing 2B##AK294399|C10orf131|100127889|chromosome 10 open reading frame 131##NM_001130446|C10orf131|100127889|chromosome 10 open reading frame 131##NM_001164178|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164181|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK301459|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK298648|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK098278|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164179|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164182|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164183|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001776|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##BC043175|CCNJ|54619|cyclin J##NM_001134375|CCNJ|54619|cyclin J##NM_001134376|CCNJ|54619|cyclin J##NM_019084|CCNJ|54619|cyclin J##AK092360|CCNJ|54619|cyclin J##AK297264|CCNJ|54619|cyclin J##AK096469|LOC728558|728558|uncharacterized LOC728558##AK091396|LOC728558|728558|uncharacterized LOC728558	0.045651	
chr19	47104082	47104203	reg1001125.p2	4.994	+	TSC_hg19_v1_chr19_-_46999149 AK124720 NM_020709	-104981	-	TSC_hg19_v1_chr19_-_46974789 BC032508 NM_001103149 NM_018215	-129337	-	AL834344 TSC_hg19_v1_chr19_-_46974751 AK290218 BC051688	-129420	-	TSC_hg19_v1_chr19_+_47104390 BC006182	255	+	AK094504 NM_001205281	314	-	TSC_hg19_v1_chr19_+_47104543 NM_005184	378	+	AK124720|PNMAL2|57469|PNMA-like 2##NM_020709|PNMAL2|57469|PNMA-like 2##BC032508|PNMAL1|55228|PNMA-like 1##NM_001103149|PNMAL1|55228|PNMA-like 1##NM_018215|PNMAL1|55228|PNMA-like 1##AL834344|PNMAL1|55228|PNMA-like 1##AK290218|PNMAL1|55228|PNMA-like 1##BC051688|PNMAL1|55228|PNMA-like 1##BC006182|CALM3|808|calmodulin 3 (phosphorylase kinase, delta)##AK094504|LOC100506012|100506012|serine/threonine-protein phosphatase 5-like##NM_001205281|LOC100506012|100506012|serine/threonine-protein phosphatase 5-like##NM_005184|CALM3|808|calmodulin 3 (phosphorylase kinase, delta)	0.656309	denovo_WM_21:57:0.656
chr12	67662544	67662706	reg1000744.p1	4.992	+	TSC_hg19_v1_chr12_-_67072881 AK095519 NM_001178074 NM_021150	-589723	-	BC115393 BC115394 TSC_hg19_v1_chr12_-_67072757 AK307576	-589869	-	TSC_hg19_v1_chr12_+_66696305 NM_033647 BC143409 BC143411 AK290894 AK024464 AB527324 AF319995	-966296	+	NM_018448 TSC_hg19_v1_chr12_+_67663121 AK292456	477	+	TSC_hg19_v1_chr12_+_67663165 AL136810 AK096010 AB020636 AK314358	547	+	BC050341 TSC_hg19_v1_chr12_+_67663413 AB384533 EU832277 EU832362	805	+	AK095519|GRIP1|23426|glutamate receptor interacting protein 1##NM_001178074|GRIP1|23426|glutamate receptor interacting protein 1##NM_021150|GRIP1|23426|glutamate receptor interacting protein 1##BC115393|GRIP1|23426|glutamate receptor interacting protein 1##BC115394|GRIP1|23426|glutamate receptor interacting protein 1##AK307576|GRIP1|23426|glutamate receptor interacting protein 1##NM_033647|HELB|92797|helicase (DNA) B##BC143409|HELB|92797|helicase (DNA) B##BC143411|HELB|92797|helicase (DNA) B##AK290894|HELB|92797|helicase (DNA) B##AF319995|HELB|92797|helicase (DNA) B##NM_018448|CAND1|55832|cullin-associated and neddylation-dissociated 1##AK292456|CAND1|55832|cullin-associated and neddylation-dissociated 1##AL136810|CAND1|55832|cullin-associated and neddylation-dissociated 1##AK096010|CAND1|55832|cullin-associated and neddylation-dissociated 1##AB020636|CAND1|55832|cullin-associated and neddylation-dissociated 1##AK314358|CAND1|55832|cullin-associated and neddylation-dissociated 1##BC050341|CAND1|55832|cullin-associated and neddylation-dissociated 1##EU832277|CAND1|55832|cullin-associated and neddylation-dissociated 1##EU832362|CAND1|55832|cullin-associated and neddylation-dissociated 1	1.512147	denovo_WM_21:2:0.618	denovo_WM_21:-25:0.894
chr17_ctg5_hap1	1170444	1170553	reg1001266.p1	4.975	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.751275	denovo_WM_21:-10:0.751
chr22	24372967	24373075	reg1000939.p2	4.971	+	BC146940 BC146943 NM_000854 AK312043 BC002415 BC146929 BC146936 BC071700 CR456374 CR456500 AB528145 CU013079 CU013097 CU013367 CU013385 DQ890742 CR456929 L38503	-50703	+	NM_001355 U49785	-51003	-	BT006970 CU012991 CU013279 DQ891571 DQ894765 U84143 AK298326 AK292044 CR456431 BC005971 AK296189 AK304122 AK315943 BC015508 NM_001084392	-56381	-	TSC_hg19_v1_chr22_+_24373110 NM_001144931	91	+	AF435971 BT019951 CU675529 X79389 DQ893480 DQ896757 CR456499 AJ867757 AJ867758 AJ874719 AL359937 TSC_hg19_v1_chr22_-_24384272 AK311138 BC007065 BC064833 NM_000853	11235	-	TSC_hg19_v1_chr22_+_24407753 AF072441 NM_001201429 NM_012295 AK307522 BC054497	34754	+	BC146940|GSTT2|2953|glutathione S-transferase theta 2##BC146943|GSTT2|2953|glutathione S-transferase theta 2##NM_000854|GSTT2|2953|glutathione S-transferase theta 2##AK312043|GSTT2|2953|glutathione S-transferase theta 2##BC002415|GSTT2|2953|glutathione S-transferase theta 2##BC146929|GSTT2|2953|glutathione S-transferase theta 2##BC146936|GSTT2B|653689|glutathione S-transferase theta 2B (gene/pseudogene)##BC071700|GSTT2B|653689|glutathione S-transferase theta 2B (gene/pseudogene)##CR456374|GSTT2|2953|glutathione S-transferase theta 2##CR456500|GSTT2|2953|glutathione S-transferase theta 2##CU013079|GSTT2|2953|glutathione S-transferase theta 2##CU013097|GSTT2|2953|glutathione S-transferase theta 2##CU013367|GSTT2|2953|glutathione S-transferase theta 2##CU013385|GSTT2|2953|glutathione S-transferase theta 2##DQ890742|GSTT2|2953|glutathione S-transferase theta 2##CR456929|GSTT2|2953|glutathione S-transferase theta 2##L38503|GSTT2|2953|glutathione S-transferase theta 2##NM_001355|DDT|1652|D-dopachrome tautomerase##U49785|DDT|1652|D-dopachrome tautomerase##BT006970|DDT|1652|D-dopachrome tautomerase##CU012991|DDT|1652|D-dopachrome tautomerase##CU013279|DDT|1652|D-dopachrome tautomerase##DQ891571|DDT|1652|D-dopachrome tautomerase##DQ894765|DDT|1652|D-dopachrome tautomerase##U84143|DDT|1652|D-dopachrome tautomerase##AK292044|DDT|1652|D-dopachrome tautomerase##CR456431|DDT|1652|D-dopachrome tautomerase##BC005971|DDT|1652|D-dopachrome tautomerase##BC015508|DDT|1652|D-dopachrome tautomerase##NM_001084392|DDT|1652|D-dopachrome tautomerase##NM_001144931|LOC391322|391322|D-dopachrome tautomerase-like##AF435971|GSTT1|2952|glutathione S-transferase theta 1##BT019951|GSTT1|2952|glutathione S-transferase theta 1##X79389|GSTT1|2952|glutathione S-transferase theta 1##DQ893480|GSTT1|2952|glutathione S-transferase theta 1##DQ896757|GSTT1|2952|glutathione S-transferase theta 1##CR456499|GSTT1|2952|glutathione S-transferase theta 1##AJ867757|GSTT1|2952|glutathione S-transferase theta 1##AJ867758|GSTT1|2952|glutathione S-transferase theta 1##AJ874719|GSTT1|2952|glutathione S-transferase theta 1##BC007065|GSTT1|2952|glutathione S-transferase theta 1##NM_000853|GSTT1|2952|glutathione S-transferase theta 1##AF072441|CABIN1|23523|calcineurin binding protein 1##NM_001201429|CABIN1|23523|calcineurin binding protein 1##NM_012295|CABIN1|23523|calcineurin binding protein 1##AK307522|CABIN1|23523|calcineurin binding protein 1##BC054497|CABIN1|23523|calcineurin binding protein 1	1.877005	denovo_WM_21:11:0.986	denovo_WM_21:-18:0.891
chr2	134877383	134877462	reg1000891.p1	4.970	+	AK057980 NM_207363 NM_207481 TSC_hg19_v1_chr2_-_134326043	-551384	-	TSC_hg19_v1_chr2_-_134179377 AK092189 AX747399	-698068	-	AK124659 TSC_hg19_v1_chr2_-_133539761	-1337728	-	NM_002410 D17716 AF113921	134463	+	TSC_hg19_v1_chr2_-_135476571 BC026170 NM_030923	599134	-	AK125008 NM_138326 BC016018 BC107420 AB071418	718796	+	AK057980|NCKAP5|344148|NCK-associated protein 5##NM_207363|NCKAP5|344148|NCK-associated protein 5##NM_207481|NCKAP5|344148|NCK-associated protein 5##AK092189|NCKAP5|344148|NCK-associated protein 5##AK124659|NCKAP5|344148|NCK-associated protein 5##NM_002410|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##D17716|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##AF113921|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##BC026170|TMEM163|81615|transmembrane protein 163##NM_030923|TMEM163|81615|transmembrane protein 163##AK125008|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##NM_138326|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##BC016018|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##BC107420|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##AB071418|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase	0.0	
chr16	72698862	72698986	reg1001181.p1	4.967	+	AK122925 NM_001160213	-492576	-	AL136795 AK315004 BC028423 AK093285 AX748032 NM_031293	-492881	-	NM_001142318	-570710	-	TSC_hg19_v1_chr16_+_72699031 AK021563	140	+	TSC_hg19_v1_chr16_-_72991733 BC029653	292781	-	TSC_hg19_v1_chr16_-_73082169 L32832 NM_006885	383297	-	AK122925|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##NM_001160213|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##AL136795|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##AK315004|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##BC028423|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##AK093285|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##NM_031293|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##NM_001142318|TXNL4B|54957|thioredoxin-like 4B##BC029653|ZFHX3|463|zinc finger homeobox 3##L32832|ZFHX3|463|zinc finger homeobox 3##NM_006885|ZFHX3|463|zinc finger homeobox 3	0.476127	denovo_WM_21:3:0.476
chr17	8113951	8114081	reg1000953.p1	4.964	+	BC009751 AB011446 BC080581 AB011450 AF004022 AF015254 BC000442 NM_004217 TSC_hg19_v1_chr17_-_8113894 AK314889 AK297976 BC013300	-133	-	TSC_hg19_v1_chr17_-_8093499 NM_017622	-20489	-	BC009261 AK000021 AK222506 TSC_hg19_v1_chr17_-_8093462 BC018880 BC070272	-20612	-	DQ451688 FJ790670 AL831955 TSC_hg19_v1_chr17_-_8151371 AK091077 AX746768 BC111783	37346	-	TSC_hg19_v1_chr17_-_8151373 NM_025099	37376	-	TSC_hg19_v1_chr17_+_8152624 AK292804 NM_012393 AK295895 AK292402 AB002359 BC146768 BC167158	38601	+	BC009751|AURKB|9212|aurora kinase B##AB011446|AURKB|9212|aurora kinase B##BC080581|AURKB|9212|aurora kinase B##AB011450|AURKB|9212|aurora kinase B##AF004022|AURKB|9212|aurora kinase B##AF015254|AURKB|9212|aurora kinase B##BC000442|AURKB|9212|aurora kinase B##NM_004217|AURKB|9212|aurora kinase B##AK314889|AURKB|9212|aurora kinase B##AK297976|AURKB|9212|aurora kinase B##BC013300|AURKB|9212|aurora kinase B##NM_017622|C17orf59|54785|chromosome 17 open reading frame 59##BC009261|C17orf59|54785|chromosome 17 open reading frame 59##AK000021|C17orf59|54785|chromosome 17 open reading frame 59##AK222506|C17orf59|54785|chromosome 17 open reading frame 59##BC018880|C17orf59|54785|chromosome 17 open reading frame 59##BC070272|C17orf59|54785|chromosome 17 open reading frame 59##DQ451688|CTC1|80169|CTS telomere maintenance complex component 1##FJ790670|CTC1|80169|CTS telomere maintenance complex component 1##AL831955|CTC1|80169|CTS telomere maintenance complex component 1##AK091077|CTC1|80169|CTS telomere maintenance complex component 1##BC111783|CTC1|80169|CTS telomere maintenance complex component 1##NM_025099|CTC1|80169|CTS telomere maintenance complex component 1##AK292804|PFAS|5198|phosphoribosylformylglycinamidine synthase##NM_012393|PFAS|5198|phosphoribosylformylglycinamidine synthase##AK295895|PFAS|5198|phosphoribosylformylglycinamidine synthase##AK292402|PFAS|5198|phosphoribosylformylglycinamidine synthase##AB002359|PFAS|5198|phosphoribosylformylglycinamidine synthase##BC146768|PFAS|5198|phosphoribosylformylglycinamidine synthase##BC167158|PFAS|5198|phosphoribosylformylglycinamidine synthase	0.990249	denovo_WM_21:-31:0.967
chr22	29137818	29137976	reg1001116.p1	4.960	+	BC004207 AK289360 CR456418 NM_001005735 NM_007194 NM_145862 AK290754 AB164374	-80	-	TSC_hg19_v1_chr22_-_29075801 NM_001145418	-62104	-	TSC_hg19_v1_chr22_-_28315245 BC018704 D30037 AK313064 CR456541 NM_012399	-822633	-	BC000004 TSC_hg19_v1_chr22_+_29138056 NM_172002 BC065569 CR456462 AY191719 AB528150 CU013013 CU013301	164	+	TSC_hg19_v1_chr22_-_29138399 AF217975	506	-	TSC_hg19_v1_chr22_+_29168630 AK289516 NM_173510	30747	+	BC004207|CHEK2|11200|checkpoint kinase 2##AK289360|CHEK2|11200|checkpoint kinase 2##CR456418|CHEK2|11200|checkpoint kinase 2##NM_001005735|CHEK2|11200|checkpoint kinase 2##NM_007194|CHEK2|11200|checkpoint kinase 2##NM_145862|CHEK2|11200|checkpoint kinase 2##AK290754|CHEK2|11200|checkpoint kinase 2##NM_001145418|TTC28|23331|tetratricopeptide repeat domain 28##BC018704|PITPNB|23760|phosphatidylinositol transfer protein, beta##D30037|PITPNB|23760|phosphatidylinositol transfer protein, beta##AK313064|PITPNB|23760|phosphatidylinositol transfer protein, beta##CR456541|PITPNB|23760|phosphatidylinositol transfer protein, beta##NM_012399|PITPNB|23760|phosphatidylinositol transfer protein, beta##NM_172002|HSCB|150274|HscB iron-sulfur cluster co-chaperone homolog (E. coli)##BC065569|HSCB|150274|HscB iron-sulfur cluster co-chaperone homolog (E. coli)##CR456462|HSCB|150274|HscB iron-sulfur cluster co-chaperone homolog (E. coli)##AY191719|HSCB|150274|HscB iron-sulfur cluster co-chaperone homolog (E. coli)##AF217975|CHEK2|11200|checkpoint kinase 2##AK289516|CCDC117|150275|coiled-coil domain containing 117##NM_173510|CCDC117|150275|coiled-coil domain containing 117	2.64843	denovo_WM_21:-19:0.728	denovo_WM_21:-49:0.960	denovo_WM_21:109:0.960
chr19	1260928	1261049	reg1000992.p1	4.957	+	TSC_hg19_v1_chr19_+_1249886 BC060848 BC094778	-11104	+	TSC_hg19_v1_chr19_+_1248581 NM_177401	-12414	+	TSC_hg19_v1_chr19_+_1241811 BC050458 BC018079 CR542218	-19155	+	TSC_hg19_v1_chr19_+_1269330 NM_001280 AK095781 AK304185 AK304470 AK311601 AK128423 AF021336 AK094781 D78134 BC000901 BC000403	8317	+	CU674448 AB528491 EU176219 EU176522 AB451225 AB451348 BT007210 TSC_hg19_v1_chr19_+_1270968	9961	+	TSC_hg19_v1_chr19_+_1275540 NM_017914 BC000890 BC012080	14579	+	BC060848|MIDN|90007|midnolin##BC094778|MIDN|90007|midnolin##NM_177401|MIDN|90007|midnolin##BC050458|ATP5D|513|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit##BC018079|ATP5D|513|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit##CR542218|ATP5D|513|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit##NM_001280|CIRBP|1153|cold inducible RNA binding protein##AK095781|CIRBP|1153|cold inducible RNA binding protein##AK304185|CIRBP|1153|cold inducible RNA binding protein##AK304470|CIRBP|1153|cold inducible RNA binding protein##AK311601|CIRBP|1153|cold inducible RNA binding protein##AK128423|CIRBP|1153|cold inducible RNA binding protein##AF021336|CIRBP|1153|cold inducible RNA binding protein##AK094781|CIRBP|1153|cold inducible RNA binding protein##D78134|CIRBP|1153|cold inducible RNA binding protein##BC000901|CIRBP|1153|cold inducible RNA binding protein##BC000403|CIRBP|1153|cold inducible RNA binding protein##EU176219|CIRBP|1153|cold inducible RNA binding protein##EU176522|CIRBP|1153|cold inducible RNA binding protein##AB451225|CIRBP|1153|cold inducible RNA binding protein##AB451348|CIRBP|1153|cold inducible RNA binding protein##BT007210|CIRBP|1153|cold inducible RNA binding protein##NM_017914|C19orf24|55009|chromosome 19 open reading frame 24##BC000890|C19orf24|55009|chromosome 19 open reading frame 24##BC012080|C19orf24|55009|chromosome 19 open reading frame 24	0.0	
chr12	54891340	54891524	reg1001110.p1	4.952	+	TSC_hg19_v1_chr12_-_54867387 BC105587 AK098819 NM_144594	-24048	-	BC021179 TSC_hg19_v1_chr12_-_54867359	-24080	-	TSC_hg19_v1_chr12_-_54813025 BC008786 AK312414 NM_002205	-78397	-	TSC_hg19_v1_chr12_+_54891516 NM_005337	73	+	TSC_hg19_v1_chr12_+_54891535 M58285	97	+	TSC_hg19_v1_chr12_+_54891545 BC093769 BC093771 BC143355	110	+	BC105587|GTSF1|121355|gametocyte specific factor 1##AK098819|GTSF1|121355|gametocyte specific factor 1##NM_144594|GTSF1|121355|gametocyte specific factor 1##BC021179|GTSF1|121355|gametocyte specific factor 1##BC008786|ITGA5|3678|integrin, alpha 5 (fibronectin receptor, alpha polypeptide)##AK312414|ITGA5|3678|integrin, alpha 5 (fibronectin receptor, alpha polypeptide)##NM_002205|ITGA5|3678|integrin, alpha 5 (fibronectin receptor, alpha polypeptide)##NM_005337|NCKAP1L|3071|NCK-associated protein 1-like##M58285|NCKAP1L|3071|NCK-associated protein 1-like##BC093769|NCKAP1L|3071|NCK-associated protein 1-like##BC093771|NCKAP1L|3071|NCK-associated protein 1-like##BC143355|NCKAP1L|3071|NCK-associated protein 1-like	0.191109	
chr19	36266249	36266346	reg1000905.p1	4.952	+	NM_001039887 TSC_hg19_v1_chr19_+_36249072 AL833894 AK055219 BC017947 AK124144 BC110893	-17220	+	BC068046 AK297852 TSC_hg19_v1_chr19_-_36247931 AK056951 AK300695 NM_144617	-18366	-	TSC_hg19_v1_chr19_-_36246416 AJ278121	-19834	-	TSC_hg19_v1_chr19_+_36266477 AK127255 NM_001172630 NM_052948 AK096338 BC128586	149	+	BC039710 TSC_hg19_v1_chr19_-_36303748	37439	-	TSC_hg19_v1_chr19_-_36303772 BC038853	37474	-	NM_001039887|C19orf55|148137|chromosome 19 open reading frame 55##AL833894|C19orf55|148137|chromosome 19 open reading frame 55##AK055219|C19orf55|148137|chromosome 19 open reading frame 55##BC017947|C19orf55|148137|chromosome 19 open reading frame 55##AK124144|C19orf55|148137|chromosome 19 open reading frame 55##BC110893|C19orf55|148137|chromosome 19 open reading frame 55##BC068046|HSPB6|126393|heat shock protein, alpha-crystallin-related, B6##AK297852|HSPB6|126393|heat shock protein, alpha-crystallin-related, B6##AK056951|HSPB6|126393|heat shock protein, alpha-crystallin-related, B6##NM_144617|HSPB6|126393|heat shock protein, alpha-crystallin-related, B6##AJ278121|HSPB6|126393|heat shock protein, alpha-crystallin-related, B6##AK127255|ARHGAP33|115703|Rho GTPase activating protein 33##NM_001172630|ARHGAP33|115703|Rho GTPase activating protein 33##NM_052948|ARHGAP33|115703|Rho GTPase activating protein 33##AK096338|ARHGAP33|115703|Rho GTPase activating protein 33##BC128586|ARHGAP33|115703|Rho GTPase activating protein 33##BC039710|PRODH2|58510|proline dehydrogenase (oxidase) 2##BC038853|PRODH2|58510|proline dehydrogenase (oxidase) 2	2.889269	denovo_WM_21:8:0.978	denovo_WM_21:61:0.986	denovo_WM_21:-79:0.925
chr17	48637933	48638064	reg1001109.p2	4.951	+	AK092731 TSC_hg19_v1_chr17_+_48624553 BC111029 AK025000 AK225189 AK291805 BC025255 NM_022827 BC065526 AK308616	-13440	+	TSC_hg19_v1_chr17_+_48610095 AK000785 AK291658 AK292977 AK295730 AK296346 AK300642 BC001038 BC051365 BC077722	-27895	+	TSC_hg19_v1_chr17_+_48610049 NM_017957	-27951	+	TSC_hg19_v1_chr17_+_48638339 BC110995 AF124351 NM_018896 NM_198376 NM_198377 NM_198378 NM_198379 NM_198380 NM_198382 NM_198383 NM_198384 NM_198385 NM_198386 NM_198387 NM_198388 NM_198396 NM_198397	395	+	TSC_hg19_v1_chr17_+_48712188 BC046126 NM_001144070 NM_003786 AF009670 Y17151 BC058907 AF085690 AF085691 AF085692 BC104952 BC137347 BC137348 AB208954 AF083552 AB010887 BC050370 AF104943 AB384796	74211	+	AK314010 CR627413 TSC_hg19_v1_chr17_-_48785180 BC012978 EU164539 NM_052855	147145	-	AK092731|SPATA20|64847|spermatogenesis associated 20##BC111029|SPATA20|64847|spermatogenesis associated 20##AK025000|SPATA20|64847|spermatogenesis associated 20##AK225189|SPATA20|64847|spermatogenesis associated 20##AK291805|SPATA20|64847|spermatogenesis associated 20##BC025255|SPATA20|64847|spermatogenesis associated 20##NM_022827|SPATA20|64847|spermatogenesis associated 20##BC065526|SPATA20|64847|spermatogenesis associated 20##AK308616|SPATA20|64847|spermatogenesis associated 20##AK000785|EPN3|55040|epsin 3##AK291658|EPN3|55040|epsin 3##AK292977|EPN3|55040|epsin 3##AK295730|EPN3|55040|epsin 3##AK296346|EPN3|55040|epsin 3##AK300642|EPN3|55040|epsin 3##BC001038|EPN3|55040|epsin 3##BC051365|EPN3|55040|epsin 3##BC077722|EPN3|55040|epsin 3##NM_017957|EPN3|55040|epsin 3##BC110995|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##AF124351|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_018896|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198376|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198377|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198378|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198379|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198380|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198382|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198383|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198384|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198385|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198386|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198387|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198388|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198396|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198397|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##BC046126|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##NM_001144070|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##NM_003786|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##AF009670|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##Y17151|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##BC058907|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##AF085690|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##AF085691|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##AF085692|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##BC104952|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##BC137347|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##BC137348|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##AB208954|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##AF083552|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##AB010887|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##BC050370|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##AF104943|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##AK314010|ANKRD40|91369|ankyrin repeat domain 40##CR627413|ANKRD40|91369|ankyrin repeat domain 40##BC012978|ANKRD40|91369|ankyrin repeat domain 40##EU164539|ANKRD40|91369|ankyrin repeat domain 40##NM_052855|ANKRD40|91369|ankyrin repeat domain 40	1.344236	denovo_WM_21:11:0.593	denovo_WM_21:-23:0.751
chr12	38197257	38197358	reg1001152.p1	4.949	+	TSC_hg19_v1_chr12_+_34175430 BC070347 BC033730 BC090948 AK292488 BC075807 DQ892056 DQ895250	-4021834	+	TSC_hg19_v1_chr12_+_34175402 BC022336	-4021921	+	AJ312278 NM_032834	-4022092	+	NM_001013620 TSC_hg19_v1_chr12_+_38710583 AK307955 BC137413 BC137414 BC144617 AY845858	513318	+	AB527319 AM392913 AY177785 BC048260 BC068040 AK307908 TSC_hg19_v1_chr12_-_39299394 BC110577 BC110578 NM_153634 BX538055	1102076	-	AB051495 AM177179 AB384627 AY368076 BC136414 BC041430 AF155117 AF450487 TSC_hg19_v1_chr12_-_39836923 AK000059 AB290166 NM_001173463 NM_001173464 NM_001173465 NM_017641	1639692	-	BC070347|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC033730|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC090948|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AK292488|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC075807|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ892056|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ895250|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC022336|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AJ312278|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##NM_032834|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##NM_001013620|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AK307955|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137413|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137414|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AY845858|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AM392913|CPNE8|144402|copine VIII##AY177785|CPNE8|144402|copine VIII##BC048260|CPNE8|144402|copine VIII##BC068040|CPNE8|144402|copine VIII##AK307908|CPNE8|144402|copine VIII##BC110577|CPNE8|144402|copine VIII##BC110578|CPNE8|144402|copine VIII##NM_153634|CPNE8|144402|copine VIII##BX538055|CPNE8|144402|copine VIII##AB051495|KIF21A|55605|kinesin family member 21A##AM177179|KIF21A|55605|kinesin family member 21A##AY368076|KIF21A|55605|kinesin family member 21A##BC136414|KIF21A|55605|kinesin family member 21A##BC041430|KIF21A|55605|kinesin family member 21A##AF155117|KIF21A|55605|kinesin family member 21A##AF450487|KIF21A|55605|kinesin family member 21A##AK000059|KIF21A|55605|kinesin family member 21A##AB290166|KIF21A|55605|kinesin family member 21A##NM_001173463|KIF21A|55605|kinesin family member 21A##NM_001173464|KIF21A|55605|kinesin family member 21A##NM_001173465|KIF21A|55605|kinesin family member 21A##NM_017641|KIF21A|55605|kinesin family member 21A	0.0	
chr19	58258050	58258177	reg1001440.p1	4.949	+	EU446533 BC025728 TSC_hg19_v1_chr19_-_58239010 AK027159 AK310074 AK293680 AK091421 AK225665 NM_024833	-19158	-	AB095924 BC152404 BC152426 BC152561 TSC_hg19_v1_chr19_-_58220573 AK092261 AX747437 NM_001085384	-37557	-	AK307670 TSC_hg19_v1_chr19_+_58193344 NM_138347 BX538151 AK300465 AK091273 AX746889 BC005868 BC041615 AB527717 CU692008	-64656	+	TSC_hg19_v1_chr19_+_58258182 AK299680 NM_173632	59	+	TSC_hg19_v1_chr19_+_58258208 BX957217 CR749390 CR936802 AK055448	99	+	AK302151 TSC_hg19_v1_chr19_+_58281007 NM_001077426 NM_001204814 NM_017652 AK095993 BC027922 AK000077 AB074270	22904	+	EU446533|ZNF671|79891|zinc finger protein 671##BC025728|ZNF671|79891|zinc finger protein 671##AK027159|ZNF671|79891|zinc finger protein 671##AK310074|ZNF671|79891|zinc finger protein 671##AK293680|ZNF671|79891|zinc finger protein 671##AK091421|ZNF671|79891|zinc finger protein 671##AK225665|ZNF671|79891|zinc finger protein 671##NM_024833|ZNF671|79891|zinc finger protein 671##AB095924|ZNF154|7710|zinc finger protein 154##BC152404|ZNF154|7710|zinc finger protein 154##BC152426|ZNF154|7710|zinc finger protein 154##BC152561|ZNF154|7710|zinc finger protein 154##AK092261|ZNF154|7710|zinc finger protein 154##NM_001085384|ZNF154|7710|zinc finger protein 154##AK307670|ZNF551|90233|zinc finger protein 551##NM_138347|ZNF551|90233|zinc finger protein 551##BX538151|ZNF551|90233|zinc finger protein 551##AK300465|ZNF551|90233|zinc finger protein 551##AK091273|ZNF551|90233|zinc finger protein 551##BC005868|ZNF551|90233|zinc finger protein 551##AK299680|ZNF776|284309|zinc finger protein 776##NM_173632|ZNF776|284309|zinc finger protein 776##BX957217|ZNF776|284309|zinc finger protein 776##CR749390|ZNF776|284309|zinc finger protein 776##CR936802|ZNF776|284309|zinc finger protein 776##AK302151|ZNF586|54807|zinc finger protein 586##NM_001077426|ZNF586|54807|zinc finger protein 586##NM_001204814|ZNF586|54807|zinc finger protein 586##NM_017652|ZNF586|54807|zinc finger protein 586##AK095993|ZNF586|54807|zinc finger protein 586##BC027922|ZNF586|54807|zinc finger protein 586##AK000077|ZNF586|54807|zinc finger protein 586##AB074270|ZNF586|54807|zinc finger protein 586	1.154361	denovo_WM_21:2:0.908	denovo_WM_21:83:0.246
chr4	100871473	100871580	reg1000973.p2	4.948	+	TSC_hg19_v1_chr4_-_100871513 AK056803 NM_002106 BC103743	-12	-	AY597416 BC018002 BC020936 D28450 TSC_hg19_v1_chr4_-_100871433	-70	-	BC039005 TSC_hg19_v1_chr4_-_100871430 AK315413 M37583 X52317	-102	-	TSC_hg19_v1_chr4_+_100871641 AK123926	120	+	AL832277 BC013592 TSC_hg19_v1_chr4_-_101111626 AK312926 AK094236 NM_145244	240104	-	CU676062 AB590686 AB034695 AK222741 AK304568 AK291831 BC017781 AF205940 AK026875 AK313504 NM_001159694 NM_016242	567634	-	AK056803|H2AFZ|3015|H2A histone family, member Z##NM_002106|H2AFZ|3015|H2A histone family, member Z##BC103743|H2AFZ|3015|H2A histone family, member Z##AY597416|H2AFZ|3015|H2A histone family, member Z##BC018002|H2AFZ|3015|H2A histone family, member Z##BC020936|H2AFZ|3015|H2A histone family, member Z##D28450|H2AFZ|3015|H2A histone family, member Z##BC039005|H2AFZ|3015|H2A histone family, member Z##AK315413|H2AFZ|3015|H2A histone family, member Z##M37583|H2AFZ|3015|H2A histone family, member Z##X52317|H2AFZ|3015|H2A histone family, member Z##AK123926|LOC256880|256880|uncharacterized LOC256880##AL832277|DDIT4L|115265|DNA-damage-inducible transcript 4-like##BC013592|DDIT4L|115265|DNA-damage-inducible transcript 4-like##AK312926|DDIT4L|115265|DNA-damage-inducible transcript 4-like##AK094236|DDIT4L|115265|DNA-damage-inducible transcript 4-like##NM_145244|DDIT4L|115265|DNA-damage-inducible transcript 4-like##AB034695|EMCN|51705|endomucin##AK222741|EMCN|51705|endomucin##AK304568|EMCN|51705|endomucin##AK291831|EMCN|51705|endomucin##BC017781|EMCN|51705|endomucin##AF205940|EMCN|51705|endomucin##AK026875|EMCN|51705|endomucin##AK313504|EMCN|51705|endomucin##NM_001159694|EMCN|51705|endomucin##NM_016242|EMCN|51705|endomucin	0.924249	denovo_WM_21:30:0.924
chr7	102389187	102389320	reg1000957.p1	4.947	+	BC056864 BC071870 TSC_hg19_v1_chr7_-_102312111 BC044209 BC050598 BC110985 BC086857 NM_032959	-77133	-	AK302217 NM_001031618 NM_001166339	-98482	+	EU341824 NM_001114403 AK296589	-105977	-	TSC_hg19_v1_chr7_+_102389473 NM_001145268 NM_001145269 BC029175 AK297455 AK298753 AK054745 DQ893359 DQ896678	237	+	NM_001031692 NM_005824 TSC_hg19_v1_chr7_+_102553446 AK226021 AK225701 U32907 AK290305 BC027903 AY358889	164179	+	AK097537 NM_145032	325761	-	BC056864|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC071870|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC044209|POLR2J3|548644|polymerase (RNA) II (DNA directed) polypeptide J3##BC050598|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC110985|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC086857|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##NM_032959|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##AK302217|SPDYE2|441273|speedy homolog E2 (Xenopus laevis)##NM_001031618|SPDYE2|441273|speedy homolog E2 (Xenopus laevis)##NM_001166339|SPDYE2L|100310812|WBSCR19-like protein 3##EU341824|UPK3BL|100134938|uroplakin 3B-like##NM_001114403|UPK3BL|100134938|uroplakin 3B-like##NM_001145268|FAM185A|222234|family with sequence similarity 185, member A##NM_001145269|FAM185A|222234|family with sequence similarity 185, member A##BC029175|FAM185A|222234|family with sequence similarity 185, member A##AK297455|FAM185A|222234|family with sequence similarity 185, member A##AK298753|FAM185A|222234|family with sequence similarity 185, member A##AK054745|FAM185A|222234|family with sequence similarity 185, member A##DQ893359|FAM185A|222234|family with sequence similarity 185, member A##DQ896678|FAM185A|222234|family with sequence similarity 185, member A##NM_001031692|LRRC17|10234|leucine rich repeat containing 17##NM_005824|LRRC17|10234|leucine rich repeat containing 17##AK226021|LRRC17|10234|leucine rich repeat containing 17##AK225701|LRRC17|10234|leucine rich repeat containing 17##U32907|LRRC17|10234|leucine rich repeat containing 17##AK290305|LRRC17|10234|leucine rich repeat containing 17##BC027903|LRRC17|10234|leucine rich repeat containing 17##AY358889|LRRC17|10234|leucine rich repeat containing 17##AK097537|FBXL13|222235|F-box and leucine-rich repeat protein 13##NM_145032|FBXL13|222235|F-box and leucine-rich repeat protein 13	0.936972	denovo_WM_21:-37:0.937
chr9	137029906	137030091	reg1000906.p2	4.947	+	AJ011376 NM_052821 AB464354	-25044	+	AK000552 TSC_hg19_v1_chr9_+_137001248 AK025810	-28749	+	TSC_hg19_v1_chr9_+_137001223 BC001635	-28773	+	TSC_hg19_v1_chr9_+_137218317 BC063827 NM_002957	188317	+	TSC_hg19_v1_chr9_+_137218326 BC110998 X52773 AB463220 EU446653 AB307705 HQ692843	188402	+	TSC_hg19_v1_chr9_+_137533652 AB371583 NM_000093	503649	+	AJ011376|WDR5|11091|WD repeat domain 5##NM_052821|WDR5|11091|WD repeat domain 5##AK000552|WDR5|11091|WD repeat domain 5##AK025810|WDR5|11091|WD repeat domain 5##BC001635|WDR5|11091|WD repeat domain 5##BC063827|RXRA|6256|retinoid X receptor, alpha##NM_002957|RXRA|6256|retinoid X receptor, alpha##BC110998|RXRA|6256|retinoid X receptor, alpha##X52773|RXRA|6256|retinoid X receptor, alpha##EU446653|RXRA|6256|retinoid X receptor, alpha##AB307705|RXRA|6256|retinoid X receptor, alpha##HQ692843|RXRA|6256|retinoid X receptor, alpha##AB371583|COL5A1|1289|collagen, type V, alpha 1##NM_000093|COL5A1|1289|collagen, type V, alpha 1	1.176732	denovo_WM_21:74:0.382	denovo_WM_21:-86:0.795
chr1	215417771	215417882	reg1001290.p1	4.946	+	NM_001017425 NM_014217 AK294780 AK291483 BC143586 BC101693 BC101695 AF004711 EF165334 AF171068 BC069462 EF165335	-161216	+	NM_001017424	-238942	+	TSC_hg19_v1_chr1_+_214776585 U30872	-641208	+	TSC_hg19_v1_chr1_+_215740717 BC013868 NM_016121 BC094879 BC117188 BC126173 BC143963 HQ258497	323037	+	AF055580 AY481573 NM_007123 NM_206933	1178911	-	HQ692853 AF117255 BC008218 AY388456 AK291647 TSC_hg19_v1_chr1_-_216896791 AB020639 AK290945 BC064700 NM_001243515 NM_001243518 NM_001243519 NM_001438	1478900	-	NM_001017425|KCNK2|3776|potassium channel, subfamily K, member 2##NM_014217|KCNK2|3776|potassium channel, subfamily K, member 2##AK294780|KCNK2|3776|potassium channel, subfamily K, member 2##AK291483|KCNK2|3776|potassium channel, subfamily K, member 2##BC143586|KCNK2|3776|potassium channel, subfamily K, member 2##BC101693|KCNK2|3776|potassium channel, subfamily K, member 2##BC101695|KCNK2|3776|potassium channel, subfamily K, member 2##AF004711|KCNK2|3776|potassium channel, subfamily K, member 2##EF165334|KCNK2|3776|potassium channel, subfamily K, member 2##AF171068|KCNK2|3776|potassium channel, subfamily K, member 2##BC069462|KCNK2|3776|potassium channel, subfamily K, member 2##EF165335|KCNK2|3776|potassium channel, subfamily K, member 2##NM_001017424|KCNK2|3776|potassium channel, subfamily K, member 2##U30872|CENPF|1063|centromere protein F, 350/400kDa (mitosin)##BC013868|KCTD3|51133|potassium channel tetramerisation domain containing 3##NM_016121|KCTD3|51133|potassium channel tetramerisation domain containing 3##BC094879|KCTD3|51133|potassium channel tetramerisation domain containing 3##BC117188|KCTD3|51133|potassium channel tetramerisation domain containing 3##BC126173|KCTD3|51133|potassium channel tetramerisation domain containing 3##BC143963|KCTD3|51133|potassium channel tetramerisation domain containing 3##HQ258497|KCTD3|51133|potassium channel tetramerisation domain containing 3##AF055580|USH2A|7399|Usher syndrome 2A (autosomal recessive, mild)##AY481573|USH2A|7399|Usher syndrome 2A (autosomal recessive, mild)##NM_007123|USH2A|7399|Usher syndrome 2A (autosomal recessive, mild)##NM_206933|USH2A|7399|Usher syndrome 2A (autosomal recessive, mild)##HQ692853|ESRRG|2104|estrogen-related receptor gamma##AF117255|ESRRG|2104|estrogen-related receptor gamma##BC008218|ESRRG|2104|estrogen-related receptor gamma##AY388456|ESRRG|2104|estrogen-related receptor gamma##AK291647|ESRRG|2104|estrogen-related receptor gamma##AB020639|ESRRG|2104|estrogen-related receptor gamma##AK290945|ESRRG|2104|estrogen-related receptor gamma##BC064700|ESRRG|2104|estrogen-related receptor gamma##NM_001243515|ESRRG|2104|estrogen-related receptor gamma##NM_001243518|ESRRG|2104|estrogen-related receptor gamma##NM_001243519|ESRRG|2104|estrogen-related receptor gamma##NM_001438|ESRRG|2104|estrogen-related receptor gamma	0.034266	
chr3	90408496	90408595	reg1000898.p1	4.941	+	M83941 AF213460 BC026247 TSC_hg19_v1_chr3_+_89156840 AK291411 AB384708	-1251695	+	AF213459 NM_005233 NM_182644 BC063282 TSC_hg19_v1_chr3_+_89156770	-1251824	+	AL832398 NM_173824 TSC_hg19_v1_chr3_+_88199126 BC024188 AK297719 AK313547	-2209517	+	AB590252 DQ892389 DQ895602 TSC_hg19_v1_chr3_-_93692741 Y00692 AK292994	3284131	-	TSC_hg19_v1_chr3_-_93692932 BC015801 NM_000313	3284373	-	TSC_hg19_v1_chr3_+_93698998 BC073842 NM_001174150 NM_001174151 NM_144996 NM_182896 CR936753 BC094725 BC104033 BC104034 BC104035 BC104036 AK299284 BC031093 AK296994 BC062993 BC015439 CR936763 AL713789 CR936756	3290482	+	M83941|EPHA3|2042|EPH receptor A3##AF213460|EPHA3|2042|EPH receptor A3##BC026247|EPHA3|2042|EPH receptor A3##AK291411|EPHA3|2042|EPH receptor A3##AF213459|EPHA3|2042|EPH receptor A3##NM_005233|EPHA3|2042|EPH receptor A3##NM_182644|EPHA3|2042|EPH receptor A3##BC063282|EPHA3|2042|EPH receptor A3##AL832398|C3orf38|285237|chromosome 3 open reading frame 38##NM_173824|C3orf38|285237|chromosome 3 open reading frame 38##BC024188|C3orf38|285237|chromosome 3 open reading frame 38##AK297719|C3orf38|285237|chromosome 3 open reading frame 38##AK313547|C3orf38|285237|chromosome 3 open reading frame 38##DQ892389|PROS1|5627|protein S (alpha)##DQ895602|PROS1|5627|protein S (alpha)##Y00692|PROS1|5627|protein S (alpha)##AK292994|PROS1|5627|protein S (alpha)##BC015801|PROS1|5627|protein S (alpha)##NM_000313|PROS1|5627|protein S (alpha)##BC073842|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_001174150|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_001174151|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_144996|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_182896|ARL13B|200894|ADP-ribosylation factor-like 13B##CR936753|ARL13B|200894|ADP-ribosylation factor-like 13B##BC094725|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104033|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104034|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104035|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104036|ARL13B|200894|ADP-ribosylation factor-like 13B##AK299284|ARL13B|200894|ADP-ribosylation factor-like 13B##BC031093|ARL13B|200894|ADP-ribosylation factor-like 13B##AK296994|ARL13B|200894|ADP-ribosylation factor-like 13B##BC062993|ARL13B|200894|ADP-ribosylation factor-like 13B##BC015439|ARL13B|200894|ADP-ribosylation factor-like 13B##CR936763|ARL13B|200894|ADP-ribosylation factor-like 13B##AL713789|ARL13B|200894|ADP-ribosylation factor-like 13B##CR936756|ARL13B|200894|ADP-ribosylation factor-like 13B	0.0	
chr11	129872771	129872911	reg1000809.p1	4.940	+	TSC_hg19_v1_chr11_-_129872731 BC112934 AL833172 BX648944 NM_020228 NM_199437	-107	-	AK310354 TSC_hg19_v1_chr11_-_129872691	-152	-	AB033057 AB385439 BC117415 BC143612 BC143613 AF503171 AF275817 NM_199438 NM_199439	-55433	-	TSC_hg19_v1_chr11_+_129939755 NM_001142276 NM_001142277 NM_001142278 NM_001642	66873	+	TSC_hg19_v1_chr11_+_129939788 AK056883 AK225283 AK296765 AK300378 AK304736 AK308248	66948	+	TSC_hg19_v1_chr11_+_129939792 L09209 S60099 L19597 Z22572 L27631	66958	+	BC112934|PRDM10|56980|PR domain containing 10##AL833172|PRDM10|56980|PR domain containing 10##BX648944|PRDM10|56980|PR domain containing 10##NM_020228|PRDM10|56980|PR domain containing 10##NM_199437|PRDM10|56980|PR domain containing 10##AK310354|PRDM10|56980|PR domain containing 10##AB033057|PRDM10|56980|PR domain containing 10##BC117415|PRDM10|56980|PR domain containing 10##BC143612|PRDM10|56980|PR domain containing 10##BC143613|PRDM10|56980|PR domain containing 10##AF503171|PRDM10|56980|PR domain containing 10##AF275817|PRDM10|56980|PR domain containing 10##NM_199438|PRDM10|56980|PR domain containing 10##NM_199439|PRDM10|56980|PR domain containing 10##NM_001142276|APLP2|334|amyloid beta (A4) precursor-like protein 2##NM_001142277|APLP2|334|amyloid beta (A4) precursor-like protein 2##NM_001142278|APLP2|334|amyloid beta (A4) precursor-like protein 2##NM_001642|APLP2|334|amyloid beta (A4) precursor-like protein 2##AK056883|APLP2|334|amyloid beta (A4) precursor-like protein 2##AK225283|APLP2|334|amyloid beta (A4) precursor-like protein 2##AK296765|APLP2|334|amyloid beta (A4) precursor-like protein 2##AK300378|APLP2|334|amyloid beta (A4) precursor-like protein 2##AK304736|APLP2|334|amyloid beta (A4) precursor-like protein 2##AK308248|APLP2|334|amyloid beta (A4) precursor-like protein 2##L09209|APLP2|334|amyloid beta (A4) precursor-like protein 2##S60099|APLP2|334|amyloid beta (A4) precursor-like protein 2##L19597|APLP2|334|amyloid beta (A4) precursor-like protein 2##Z22572|APLP2|334|amyloid beta (A4) precursor-like protein 2##L27631|APLP2|334|amyloid beta (A4) precursor-like protein 2	0.193904	
chr12	120933739	120933855	reg1001062.p2	4.940	+	TSC_hg19_v1_chr12_+_120907672 NM_001037494	-26152	+	TSC_hg19_v1_chr12_-_120907535 NM_003769	-26223	-	TSC_hg19_v1_chr12_-_120907522 AK294254 AK309778	-26277	-	TSC_hg19_v1_chr12_+_120933890 NM_001037495 NM_003746	70	+	TSC_hg19_v1_chr12_+_120933915 AK311790 AK309022	116	+	TSC_hg19_v1_chr12_+_120933916 BC100289 U32944 BC104244 BC104245	137	+	NM_001037494|DYNLL1|8655|dynein, light chain, LC8-type 1##NM_003769|SRSF9|8683|serine/arginine-rich splicing factor 9##AK294254|SRSF9|8683|serine/arginine-rich splicing factor 9##NM_001037495|DYNLL1|8655|dynein, light chain, LC8-type 1##NM_003746|DYNLL1|8655|dynein, light chain, LC8-type 1##AK311790|DYNLL1|8655|dynein, light chain, LC8-type 1##BC100289|DYNLL1|8655|dynein, light chain, LC8-type 1##U32944|DYNLL1|8655|dynein, light chain, LC8-type 1##BC104244|DYNLL1|8655|dynein, light chain, LC8-type 1##BC104245|DYNLL1|8655|dynein, light chain, LC8-type 1	0.900132	denovo_WM_21:3:0.660	denovo_WM_21:34:0.241
chr12	53746417	53746546	reg1001205.p1	4.940	+	AY150674 NM_001173467	-16478	-	AB527932 EU446563 BC101549 BC113613 AY150673 AF477981 NM_152860 AF466179	-16998	-	TSC_hg19_v1_chr12_-_53715374 AK293342 BC000659 BC018836 AY237818 NM_001173466 NM_015665	-31104	-	TSC_hg19_v1_chr12_+_53773935 BC062539 NM_001251825 NM_138473 AF255682 AJ272134	27509	+	BC043224 NM_003109	27943	+	NM_001164690 NM_001164691 NM_020547 AK313593 AF172932 BC126316 BC136356 AY714878 HQ258327	71197	+	AY150674|SP7|121340|Sp7 transcription factor##NM_001173467|SP7|121340|Sp7 transcription factor##EU446563|SP7|121340|Sp7 transcription factor##BC101549|SP7|121340|Sp7 transcription factor##BC113613|SP7|121340|Sp7 transcription factor##AY150673|SP7|121340|Sp7 transcription factor##AF477981|SP7|121340|Sp7 transcription factor##NM_152860|SP7|121340|Sp7 transcription factor##AF466179|SP7|121340|Sp7 transcription factor##AK293342|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##BC000659|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##BC018836|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##AY237818|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##NM_001173466|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##NM_015665|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##BC062539|SP1|6667|Sp1 transcription factor##NM_001251825|SP1|6667|Sp1 transcription factor##NM_138473|SP1|6667|Sp1 transcription factor##AF255682|SP1|6667|Sp1 transcription factor##AJ272134|SP1|6667|Sp1 transcription factor##BC043224|SP1|6667|Sp1 transcription factor##NM_003109|SP1|6667|Sp1 transcription factor##NM_001164690|AMHR2|269|anti-Mullerian hormone receptor, type II##NM_001164691|AMHR2|269|anti-Mullerian hormone receptor, type II##NM_020547|AMHR2|269|anti-Mullerian hormone receptor, type II##AK313593|AMHR2|269|anti-Mullerian hormone receptor, type II##AF172932|AMHR2|269|anti-Mullerian hormone receptor, type II##BC126316|AMHR2|269|anti-Mullerian hormone receptor, type II##BC136356|AMHR2|269|anti-Mullerian hormone receptor, type II##AY714878|AMHR2|269|anti-Mullerian hormone receptor, type II##HQ258327|AMHR2|269|anti-Mullerian hormone receptor, type II	0.0	
chr10	73137147	73137224	reg1001088.p1	4.938	+	BC063019 TSC_hg19_v1_chr10_+_73079044 AY288928	-58139	+	AX775915 AX775917 AX775919 AX775921 NM_001174098 NM_018344 TSC_hg19_v1_chr10_+_73079015 AK316152 AY358686 BC120996 BC120997 AK304503 BC050589 AK314497	-58160	+	TSC_hg19_v1_chr10_+_72972326 AK128132 NM_001244889 NM_170744 AY358351 AB096256	-164805	+	TSC_hg19_v1_chr10_+_73156683 BC011570 NM_001171930 NM_001171931 NM_001171932 NM_022124 NM_052836 BC032581 BC139903 BC108254 BC065284 BC136976 BC136977	19553	+	AK123442 BC071608 NM_001164375 TSC_hg19_v1_chr10_-_73479685	342407	-	AK074172 NM_001168390	360395	-	BC063019|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AY288928|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AX775915|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AX775917|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AX775919|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AX775921|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##NM_001174098|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##NM_018344|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AK316152|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AY358686|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##BC120996|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##BC120997|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AK304503|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##BC050589|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AK314497|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AK128132|UNC5B|219699|unc-5 homolog B (C. elegans)##NM_001244889|UNC5B|219699|unc-5 homolog B (C. elegans)##NM_170744|UNC5B|219699|unc-5 homolog B (C. elegans)##AY358351|UNC5B|219699|unc-5 homolog B (C. elegans)##AB096256|UNC5B|219699|unc-5 homolog B (C. elegans)##BC011570|CDH23|64072|cadherin-related 23##NM_001171930|CDH23|64072|cadherin-related 23##NM_001171931|CDH23|64072|cadherin-related 23##NM_001171932|CDH23|64072|cadherin-related 23##NM_022124|CDH23|64072|cadherin-related 23##NM_052836|CDH23|64072|cadherin-related 23##BC032581|CDH23|64072|cadherin-related 23##BC139903|CDH23|64072|cadherin-related 23##BC108254|CDH23|64072|cadherin-related 23##BC065284|CDH23|64072|cadherin-related 23##BC136976|CDH23|64072|cadherin-related 23##BC136977|CDH23|64072|cadherin-related 23##AK123442|C10orf105|414152|chromosome 10 open reading frame 105##BC071608|C10orf105|414152|chromosome 10 open reading frame 105##NM_001164375|C10orf105|414152|chromosome 10 open reading frame 105##AK074172|C10orf105|414152|chromosome 10 open reading frame 105##NM_001168390|C10orf105|414152|chromosome 10 open reading frame 105	0.024649	
chr10	46168225	46168347	reg1001107.p1	4.937	+	TSC_hg19_v1_chr10_-_46168221 AK090704 AX746581 BC017591 AK292420 AK292469 AK314395 AK097924 NM_001128324 NM_174890 BC045587	-72	-	TSC_hg19_v1_chr10_-_46090318 BC066988 NM_001002265 NM_145021	-77992	-	AK313340 BC025394 NM_001002266 AK307667	-137467	-	NM_001169106 NM_001169107 NM_015262 TSC_hg19_v1_chr10_+_46222703 AK291430 AB011164 BC150611 AK303048 AK293929 BC053887	54421	+	BC171820 BC171833 AF411132 NM_133446	174627	-	AB464105 AY704146 AY704149 AY704151 AY704155 BC093750 BC113473 BC143394 BC171725 NM_001042357 NM_001042389	451710	-	AK090704|ZFAND4|93550|zinc finger, AN1-type domain 4##BC017591|ZFAND4|93550|zinc finger, AN1-type domain 4##AK292420|ZFAND4|93550|zinc finger, AN1-type domain 4##AK292469|ZFAND4|93550|zinc finger, AN1-type domain 4##AK314395|ZFAND4|93550|zinc finger, AN1-type domain 4##AK097924|ZFAND4|93550|zinc finger, AN1-type domain 4##NM_001128324|ZFAND4|93550|zinc finger, AN1-type domain 4##NM_174890|ZFAND4|93550|zinc finger, AN1-type domain 4##BC045587|ZFAND4|93550|zinc finger, AN1-type domain 4##BC066988|MARCH8|220972|membrane-associated ring finger (C3HC4) 8##NM_001002265|MARCH8|220972|membrane-associated ring finger (C3HC4) 8##NM_145021|MARCH8|220972|membrane-associated ring finger (C3HC4) 8##AK313340|MARCH8|220972|membrane-associated ring finger (C3HC4) 8##BC025394|MARCH8|220972|membrane-associated ring finger (C3HC4) 8##NM_001002266|MARCH8|220972|membrane-associated ring finger (C3HC4) 8##AK307667|MARCH8|220972|membrane-associated ring finger (C3HC4) 8##NM_001169106|FAM21C|253725|family with sequence similarity 21, member C##NM_001169107|FAM21C|253725|family with sequence similarity 21, member C##NM_015262|FAM21C|253725|family with sequence similarity 21, member C##AK291430|FAM21C|253725|family with sequence similarity 21, member C##AB011164|FAM21C|253725|family with sequence similarity 21, member C##BC150611|FAM21C|253725|family with sequence similarity 21, member C##AK303048|FAM21C|253725|family with sequence similarity 21, member C##AK293929|FAM21C|253725|family with sequence similarity 21, member C##BC053887|FAM21C|253725|family with sequence similarity 21, member C##BC171833|AGAP4|119016|ArfGAP with GTPase domain, ankyrin repeat and PH domain 4##AF411132|AGAP4|119016|ArfGAP with GTPase domain, ankyrin repeat and PH domain 4##NM_133446|AGAP4|119016|ArfGAP with GTPase domain, ankyrin repeat and PH domain 4##AY704146|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704149|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704151|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704155|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BC093750|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BC113473|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BC143394|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BC171725|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042357|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042389|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A	0.146328	
chr6_qbl_hap6	2422058	2422149	reg1000965.p1	4.936	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.927042	denovo_WM_21:13:0.778
chr15	86338152	86338245	reg1001118.p1	4.933	+	TSC_hg19_v1_chr15_-_86338178 NM_022480	-3	-	TSC_hg19_v1_chr15_-_86338156 AL136796 BC028100 AK056663 AK315541 AK092231 AX747419 AY764034	-101	-	AF127481 NM_144767	-117931	+	NM_152336	347043	+	NM_001007156 NM_001012338 NM_001243101 NM_002530 TSC_hg19_v1_chr15_-_88799971	2461768	-	CU676098 AF205435 TSC_hg19_v1_chr15_-_89010620 AK315434 AF210056 BC017883 NM_022163	2672430	-	NM_022480|KLHL25|64410|kelch-like 25 (Drosophila)##AL136796|KLHL25|64410|kelch-like 25 (Drosophila)##BC028100|KLHL25|64410|kelch-like 25 (Drosophila)##AK056663|KLHL25|64410|kelch-like 25 (Drosophila)##AK315541|KLHL25|64410|kelch-like 25 (Drosophila)##AK092231|KLHL25|64410|kelch-like 25 (Drosophila)##AY764034|KLHL25|64410|kelch-like 25 (Drosophila)##NM_144767|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_152336|AGBL1|123624|ATP/GTP binding protein-like 1##NM_001007156|NTRK3|4916|neurotrophic tyrosine kinase, receptor, type 3##NM_001012338|NTRK3|4916|neurotrophic tyrosine kinase, receptor, type 3##NM_001243101|NTRK3|4916|neurotrophic tyrosine kinase, receptor, type 3##NM_002530|NTRK3|4916|neurotrophic tyrosine kinase, receptor, type 3##AF205435|MRPL46|26589|mitochondrial ribosomal protein L46##AK315434|MRPL46|26589|mitochondrial ribosomal protein L46##AF210056|MRPL46|26589|mitochondrial ribosomal protein L46##BC017883|MRPL46|26589|mitochondrial ribosomal protein L46##NM_022163|MRPL46|26589|mitochondrial ribosomal protein L46	0.993855	denovo_WM_21:2:0.994
chr17	66453844	66453966	reg1000948.p1	4.933	+	AY691424 CU691786 TSC_hg19_v1_chr17_-_66453638 BC039867 AK301830 AK000917 NM_017983	-294	-	AX750577 AX750581 U79745 AK313121 AK290417 BC064832 NM_001174166 NM_004694	-166575	-	TSC_hg19_v1_chr17_+_66255280 AY358380 NM_014960	-198571	+	TSC_hg19_v1_chr17_+_66508140 NM_212471 Y07642	54218	+	TSC_hg19_v1_chr17_+_66508161 BC093042	54261	+	TSC_hg19_v1_chr17_+_66508546 NM_002734 NM_212472	54630	+	AY691424|WIPI1|55062|WD repeat domain, phosphoinositide interacting 1##BC039867|WIPI1|55062|WD repeat domain, phosphoinositide interacting 1##AK301830|WIPI1|55062|WD repeat domain, phosphoinositide interacting 1##AK000917|WIPI1|55062|WD repeat domain, phosphoinositide interacting 1##NM_017983|WIPI1|55062|WD repeat domain, phosphoinositide interacting 1##AX750581|SLC16A6|9120|solute carrier family 16, member 6 (monocarboxylic acid transporter 7)##U79745|SLC16A6|9120|solute carrier family 16, member 6 (monocarboxylic acid transporter 7)##AK313121|SLC16A6|9120|solute carrier family 16, member 6 (monocarboxylic acid transporter 7)##AK290417|SLC16A6|9120|solute carrier family 16, member 6 (monocarboxylic acid transporter 7)##BC064832|SLC16A6|9120|solute carrier family 16, member 6 (monocarboxylic acid transporter 7)##NM_001174166|SLC16A6|9120|solute carrier family 16, member 6 (monocarboxylic acid transporter 7)##NM_004694|SLC16A6|9120|solute carrier family 16, member 6 (monocarboxylic acid transporter 7)##AY358380|ARSG|22901|arylsulfatase G##NM_014960|ARSG|22901|arylsulfatase G##NM_212471|PRKAR1A|5573|protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)##Y07642|PRKAR1A|5573|protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)##BC093042|PRKAR1A|5573|protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)##NM_002734|PRKAR1A|5573|protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)##NM_212472|PRKAR1A|5573|protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)	0.169557	
chr2	25640799	25640929	reg1001070.p2	4.932	+	TSC_hg19_v1_chr2_-_25565458 BC032392 NM_175629 NM_175630	-75402	-	TSC_hg19_v1_chr2_-_25565353 AB208833	-75501	-	TSC_hg19_v1_chr2_-_25565338 BC051864 AF331856	-75536	-	AK294357 TSC_hg19_v1_chr2_-_25896434 AK300019 BC016655 AF022728 Y12712 AK225724 AK294174 AK094494 BC049366 NM_021907 NM_033147 NM_033148 NM_183360 NM_183361	255537	-	AB385496 TSC_hg19_v1_chr2_-_26101159	460265	-	TSC_hg19_v1_chr2_-_26101174 AB084279	460309	-	BC032392|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_175629|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_175630|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AB208833|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##BC051864|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AF331856|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AK294357|DTNB|1838|dystrobrevin, beta##AK300019|DTNB|1838|dystrobrevin, beta##BC016655|DTNB|1838|dystrobrevin, beta##AF022728|DTNB|1838|dystrobrevin, beta##Y12712|DTNB|1838|dystrobrevin, beta##AK225724|DTNB|1838|dystrobrevin, beta##AK294174|DTNB|1838|dystrobrevin, beta##AK094494|DTNB|1838|dystrobrevin, beta##BC049366|DTNB|1838|dystrobrevin, beta##NM_021907|DTNB|1838|dystrobrevin, beta##NM_033147|DTNB|1838|dystrobrevin, beta##NM_033148|DTNB|1838|dystrobrevin, beta##NM_183360|DTNB|1838|dystrobrevin, beta##NM_183361|DTNB|1838|dystrobrevin, beta##AB084279|ASXL2|55252|additional sex combs like 2 (Drosophila)	0.371037	denovo_WM_21:-25:0.371
chr5	46093400	46093521	reg1001341.p1	4.929	+	AF488549 NM_021072	-397241	-	AF064876 TSC_hg19_v1_chr5_-_45695947	-397569	-	TSC_hg19_v1_chr5_+_44809056 AF146192 AL355715 NM_016640 AK222704 BC007735 AK222894 AL136706 AK074777 CU675783 BC002460	-1284433	+	AK300860 TSC_hg19_v1_chr5_-_49737200 BC059398	3643739	-	TSC_hg19_v1_chr5_-_49737229 NM_198449	3643783	-	AK298680 AK314466 BC105789 NM_001178055	3868272	+	AF488549|HCN1|348980|hyperpolarization activated cyclic nucleotide-gated potassium channel 1##NM_021072|HCN1|348980|hyperpolarization activated cyclic nucleotide-gated potassium channel 1##AF064876|HCN1|348980|hyperpolarization activated cyclic nucleotide-gated potassium channel 1##AF146192|MRPS30|10884|mitochondrial ribosomal protein S30##AL355715|MRPS30|10884|mitochondrial ribosomal protein S30##NM_016640|MRPS30|10884|mitochondrial ribosomal protein S30##AK222704|MRPS30|10884|mitochondrial ribosomal protein S30##BC007735|MRPS30|10884|mitochondrial ribosomal protein S30##AK222894|MRPS30|10884|mitochondrial ribosomal protein S30##AL136706|MRPS30|10884|mitochondrial ribosomal protein S30##AK074777|MRPS30|10884|mitochondrial ribosomal protein S30##BC002460|MRPS30|10884|mitochondrial ribosomal protein S30##AK300860|EMB|133418|embigin##BC059398|EMB|133418|embigin##NM_198449|EMB|133418|embigin##AK298680|PARP8|79668|poly (ADP-ribose) polymerase family, member 8##AK314466|PARP8|79668|poly (ADP-ribose) polymerase family, member 8##BC105789|PARP8|79668|poly (ADP-ribose) polymerase family, member 8##NM_001178055|PARP8|79668|poly (ADP-ribose) polymerase family, member 8	0.0	
chr2	85152048	85152180	reg1001090.p1	4.927	+	TSC_hg19_v1_chr2_+_85133055 M92381	-19052	+	NM_021103 AK130949 D28363 TSC_hg19_v1_chr2_+_85132779 AK311952 BC016731 BC107889 S54005 BC016025 M20259 AY453400	-19319	+	TSC_hg19_v1_chr2_-_85108241 NM_001080824 BC051789	-43811	-	TSC_hg19_v1_chr2_+_85198299 NM_020122	46170	+	BC000178 TSC_hg19_v1_chr2_+_85198470 AK314761 AB083199 AF155652 AK023403	46377	+	TSC_hg19_v1_chr2_+_85360536 BC058894 NM_031283 AB031046 AB590638	208545	+	M92381|TMSB10|9168|thymosin beta 10##NM_021103|TMSB10|9168|thymosin beta 10##AK130949|TMSB10|9168|thymosin beta 10##AK311952|TMSB10|9168|thymosin beta 10##BC016731|TMSB10|9168|thymosin beta 10##BC107889|TMSB10|9168|thymosin beta 10##S54005|TMSB10|9168|thymosin beta 10##BC016025|TMSB10|9168|thymosin beta 10##M20259|TMSB10|9168|thymosin beta 10##AY453400|TMSB10|9168|thymosin beta 10##NM_001080824|C2orf89|129293|chromosome 2 open reading frame 89##BC051789|C2orf89|129293|chromosome 2 open reading frame 89##NM_020122|KCMF1|56888|potassium channel modulatory factor 1##BC000178|KCMF1|56888|potassium channel modulatory factor 1##AK314761|KCMF1|56888|potassium channel modulatory factor 1##AB083199|KCMF1|56888|potassium channel modulatory factor 1##AF155652|KCMF1|56888|potassium channel modulatory factor 1##AK023403|KCMF1|56888|potassium channel modulatory factor 1##BC058894|TCF7L1|83439|transcription factor 7-like 1 (T-cell specific, HMG-box)##NM_031283|TCF7L1|83439|transcription factor 7-like 1 (T-cell specific, HMG-box)##AB031046|TCF7L1|83439|transcription factor 7-like 1 (T-cell specific, HMG-box)	3.537045	denovo_WM_21:-24:0.283	denovo_WM_21:27:0.990	denovo_WM_21:-45:0.990	denovo_WM_21:48:0.283	denovo_WM_21:-112:0.990
chr21	45175088	45175219	reg1001261.p1	4.926	+	TSC_hg19_v1_chr21_+_45161415 AY303972	-13765	+	U89606 CU674050 AB529123 TSC_hg19_v1_chr21_+_45139241	-35946	+	TSC_hg19_v1_chr21_+_45139035 AB621819	-36120	+	AL110184 TSC_hg19_v1_chr21_+_45178006	2781	+	BT007040 CR542148 DQ890923 DQ894073 TSC_hg19_v1_chr21_-_45196190 AK312133 BC003370	21018	-	TSC_hg19_v1_chr21_-_45196227 BC010532 L03558 NM_000100	21076	-	AY303972|PDXK|8566|pyridoxal (pyridoxine, vitamin B6) kinase##U89606|PDXK|8566|pyridoxal (pyridoxine, vitamin B6) kinase##AL110184|PDXK|8566|pyridoxal (pyridoxine, vitamin B6) kinase##BT007040|CSTB|1476|cystatin B (stefin B)##CR542148|CSTB|1476|cystatin B (stefin B)##DQ890923|CSTB|1476|cystatin B (stefin B)##DQ894073|CSTB|1476|cystatin B (stefin B)##AK312133|CSTB|1476|cystatin B (stefin B)##BC003370|CSTB|1476|cystatin B (stefin B)##BC010532|CSTB|1476|cystatin B (stefin B)##L03558|CSTB|1476|cystatin B (stefin B)##NM_000100|CSTB|1476|cystatin B (stefin B)	1.52662	denovo_WM_21:-8:0.305	denovo_WM_21:23:0.305	denovo_WM_21:-40:0.305	denovo_WM_21:55:0.305	denovo_WM_21:-72:0.305
chr10	3215016	3215111	reg1001193.p2	4.923	+	TSC_hg19_v1_chr10_-_3214979 BC111987 BC113369 AK002061 NM_001242307 NM_001242309 NM_014889	-58	-	CU678866 TSC_hg19_v1_chr10_-_3214975 AB384562 BC005025 AK225084 AK293788 AK315117 AK294865 AK299464 AK303406 BC095422 BX649017 AF061243	-93	-	BC045577 TSC_hg19_v1_chr10_-_3214936	-138	-	BT006778 AB528304 CU674150 DQ890752 FJ619623 U44975 AF001461 TSC_hg19_v1_chr10_-_3827402 AB017493 BC004301 BC000311 AK316596 AK293259	612248	-	TSC_hg19_v1_chr10_-_3827432 NM_001160124 NM_001160125 NM_001300	612446	-	TSC_hg19_v1_chr10_+_4868471 BC023972 AK074211 NM_001040177 BC002862 AK302155 AB040820 AB040821 AB040822 AF263242 CU678252 AB055603	1653355	+	BC111987|PITRM1|10531|pitrilysin metallopeptidase 1##BC113369|PITRM1|10531|pitrilysin metallopeptidase 1##AK002061|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242307|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242309|PITRM1|10531|pitrilysin metallopeptidase 1##NM_014889|PITRM1|10531|pitrilysin metallopeptidase 1##BC005025|PITRM1|10531|pitrilysin metallopeptidase 1##AK225084|PITRM1|10531|pitrilysin metallopeptidase 1##AK293788|PITRM1|10531|pitrilysin metallopeptidase 1##AK315117|PITRM1|10531|pitrilysin metallopeptidase 1##AK294865|PITRM1|10531|pitrilysin metallopeptidase 1##AK299464|PITRM1|10531|pitrilysin metallopeptidase 1##AK303406|PITRM1|10531|pitrilysin metallopeptidase 1##BC095422|PITRM1|10531|pitrilysin metallopeptidase 1##BX649017|PITRM1|10531|pitrilysin metallopeptidase 1##AF061243|PITRM1|10531|pitrilysin metallopeptidase 1##BC045577|PITRM1|10531|pitrilysin metallopeptidase 1##BT006778|KLF6|1316|Kruppel-like factor 6##DQ890752|KLF6|1316|Kruppel-like factor 6##FJ619623|KLF6|1316|Kruppel-like factor 6##U44975|KLF6|1316|Kruppel-like factor 6##AF001461|KLF6|1316|Kruppel-like factor 6##AB017493|KLF6|1316|Kruppel-like factor 6##BC004301|KLF6|1316|Kruppel-like factor 6##BC000311|KLF6|1316|Kruppel-like factor 6##AK316596|KLF6|1316|Kruppel-like factor 6##AK293259|KLF6|1316|Kruppel-like factor 6##NM_001160124|KLF6|1316|Kruppel-like factor 6##NM_001160125|KLF6|1316|Kruppel-like factor 6##NM_001300|KLF6|1316|Kruppel-like factor 6##BC023972|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK074211|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001040177|AKR1E2|83592|aldo-keto reductase family 1, member E2##BC002862|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK302155|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040820|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040821|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040822|AKR1E2|83592|aldo-keto reductase family 1, member E2##AF263242|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB055603|AKR1E2|83592|aldo-keto reductase family 1, member E2	0.928246	denovo_WM_21:-7:0.912
chr12	56521614	56521704	reg1000553.p1	4.920	+	TSC_hg19_v1_chr12_+_56512049 AK027357 NM_032786 BC018708	-9650	+	NM_001035267 NM_021104 Z12962 BC102007 BC102008 BC102009 D28462 BC014383 BC070254 BC105286 BC015984 BC070252 BC070253 BC070255 BC105279 BC105296 BC105794 BC105795 BC105799 TSC_hg19_v1_chr12_+_56510418 BC017820 BC062462 BC064907 BC142666 BC142726 BC082759 BC066328 BC032611 BC070483	-11191	+	TSC_hg19_v1_chr12_+_56498422 BC011718 BC032111 BC072007 U59435 BC069786 AB464072 CU675707 DQ893446 DQ896751	-23192	+	TSC_hg19_v1_chr12_+_56522018 NM_001184796 NM_015292 AK022790	338	+	TSC_hg19_v1_chr12_+_56522044 AK128730	385	+	TSC_hg19_v1_chr12_+_56522050 AK225035 AK290337 BC004998 BC013880	398	+	AK027357|ZC3H10|84872|zinc finger CCCH-type containing 10##NM_032786|ZC3H10|84872|zinc finger CCCH-type containing 10##BC018708|ZC3H10|84872|zinc finger CCCH-type containing 10##NM_001035267|RPL41|6171|ribosomal protein L41##NM_021104|RPL41|6171|ribosomal protein L41##Z12962|RPL41|6171|ribosomal protein L41##BC102007|RPL41|6171|ribosomal protein L41##BC102008|RPL41|6171|ribosomal protein L41##BC102009|RPL41|6171|ribosomal protein L41##D28462|RPL41|6171|ribosomal protein L41##BC014383|RPL41|6171|ribosomal protein L41##BC070254|RPL41|6171|ribosomal protein L41##BC105286|RPL41|6171|ribosomal protein L41##BC015984|RPL41|6171|ribosomal protein L41##BC070252|RPL41|6171|ribosomal protein L41##BC070253|RPL41|6171|ribosomal protein L41##BC070255|RPL41|6171|ribosomal protein L41##BC105279|RPL41|6171|ribosomal protein L41##BC105296|RPL41|6171|ribosomal protein L41##BC105794|RPL41|6171|ribosomal protein L41##BC105795|RPL41|6171|ribosomal protein L41##BC105799|RPL41|6171|ribosomal protein L41##BC017820|RPL41|6171|ribosomal protein L41##BC062462|RPL41|6171|ribosomal protein L41##BC064907|RPL41|6171|ribosomal protein L41##BC142666|RPL41|6171|ribosomal protein L41##BC142726|RPL41|6171|ribosomal protein L41##BC082759|RPL41|6171|ribosomal protein L41##BC066328|RPL41|6171|ribosomal protein L41##BC032611|RPL41|6171|ribosomal protein L41##BC070483|RPL41|6171|ribosomal protein L41##BC032111|PA2G4|5036|proliferation-associated 2G4, 38kDa##BC072007|PA2G4|5036|proliferation-associated 2G4, 38kDa##U59435|PA2G4|5036|proliferation-associated 2G4, 38kDa##BC069786|PA2G4|5036|proliferation-associated 2G4, 38kDa##DQ893446|PA2G4|5036|proliferation-associated 2G4, 38kDa##DQ896751|PA2G4|5036|proliferation-associated 2G4, 38kDa##NM_001184796|ESYT1|23344|extended synaptotagmin-like protein 1##NM_015292|ESYT1|23344|extended synaptotagmin-like protein 1##AK022790|ESYT1|23344|extended synaptotagmin-like protein 1##AK128730|ESYT1|23344|extended synaptotagmin-like protein 1##AK225035|ESYT1|23344|extended synaptotagmin-like protein 1##AK290337|ESYT1|23344|extended synaptotagmin-like protein 1##BC004998|ESYT1|23344|extended synaptotagmin-like protein 1##BC013880|ESYT1|23344|extended synaptotagmin-like protein 1	0.0	
chr20	60877910	60877999	reg1000682.p2	4.917	+	TSC_hg19_v1_chr20_+_60813616 AB018315 AY028168 BC000296 BC004455 BC018812	-64333	+	TSC_hg19_v1_chr20_+_60813579 AF392447 AK000230 AK296595 AK315576 NM_014835 NM_144498	-64374	+	AK291851 TSC_hg19_v1_chr20_+_60813576	-64378	+	TSC_hg19_v1_chr20_+_60878021 AK307459	26	+	TSC_hg19_v1_chr20_+_60878032 NM_007002 NM_175573	81	+	TSC_hg19_v1_chr20_+_60878052 BC017245 BC093021 BC003059 AK297567 D64154	106	+	AB018315|OSBPL2|9885|oxysterol binding protein-like 2##AY028168|OSBPL2|9885|oxysterol binding protein-like 2##BC000296|OSBPL2|9885|oxysterol binding protein-like 2##BC004455|OSBPL2|9885|oxysterol binding protein-like 2##BC018812|OSBPL2|9885|oxysterol binding protein-like 2##AF392447|OSBPL2|9885|oxysterol binding protein-like 2##AK000230|OSBPL2|9885|oxysterol binding protein-like 2##AK296595|OSBPL2|9885|oxysterol binding protein-like 2##AK315576|OSBPL2|9885|oxysterol binding protein-like 2##NM_014835|OSBPL2|9885|oxysterol binding protein-like 2##NM_144498|OSBPL2|9885|oxysterol binding protein-like 2##AK291851|OSBPL2|9885|oxysterol binding protein-like 2##AK307459|ADRM1|11047|adhesion regulating molecule 1##NM_007002|ADRM1|11047|adhesion regulating molecule 1##NM_175573|ADRM1|11047|adhesion regulating molecule 1##BC017245|ADRM1|11047|adhesion regulating molecule 1##BC093021|ADRM1|11047|adhesion regulating molecule 1##BC003059|ADRM1|11047|adhesion regulating molecule 1##AK297567|ADRM1|11047|adhesion regulating molecule 1##D64154|ADRM1|11047|adhesion regulating molecule 1	0.0	
chr8	28347821	28347921	reg1001485.p1	4.913	+	BC074986 AF453435 TSC_hg19_v1_chr8_-_28347805 BC102026 BC102027 BC102028 AK098243 NM_172366	-92	-	AK002050 AK023418 NM_018660 AB057659 AB073627	-103910	-	BC001237 TSC_hg19_v1_chr8_-_28243694	-104229	-	TSC_hg19_v1_chr8_+_28351764 NM_017412 NM_145866 AK291480 AB039723	3894	+	TSC_hg19_v1_chr8_+_28559032 AB011091	211204	+	TSC_hg19_v1_chr8_+_28559149 AF001690 AB007042 AF083551 NM_001440	211279	+	BC074986|FBXO16|157574|F-box protein 16##AF453435|FBXO16|157574|F-box protein 16##BC102026|FBXO16|157574|F-box protein 16##BC102027|FBXO16|157574|F-box protein 16##BC102028|FBXO16|157574|F-box protein 16##AK098243|ZNF395|55893|zinc finger protein 395##NM_172366|FBXO16|157574|F-box protein 16##AK002050|ZNF395|55893|zinc finger protein 395##AK023418|ZNF395|55893|zinc finger protein 395##NM_018660|ZNF395|55893|zinc finger protein 395##AB057659|ZNF395|55893|zinc finger protein 395##AB073627|ZNF395|55893|zinc finger protein 395##BC001237|ZNF395|55893|zinc finger protein 395##NM_017412|FZD3|7976|frizzled family receptor 3##NM_145866|FZD3|7976|frizzled family receptor 3##AK291480|FZD3|7976|frizzled family receptor 3##AB039723|FZD3|7976|frizzled family receptor 3##AB011091|EXTL3|2137|exostoses (multiple)-like 3##AF001690|EXTL3|2137|exostoses (multiple)-like 3##AB007042|EXTL3|2137|exostoses (multiple)-like 3##AF083551|EXTL3|2137|exostoses (multiple)-like 3##NM_001440|EXTL3|2137|exostoses (multiple)-like 3	0.892543	denovo_WM_21:16:0.893
chr16	18812938	18813093	reg1001122.p2	4.911	+	AK301636 CU679669 TSC_hg19_v1_chr16_-_18812870 BC010281 D31885 NM_015161 AK291137 AK308092 BX648446 AK300825 AK300869 AK307315	-233	-	BC001697 TSC_hg19_v1_chr16_-_18801657 BC030569 BC032115 AK023088 AK130967 AK291988 AK311976 D28347 NM_001019 NM_001030009 BC105273 BC105292	-11360	-	TSC_hg19_v1_chr16_-_18798077 AK127316	-14919	-	TSC_hg19_v1_chr16_-_18937724 NM_015092 AB061371	124716	-	AK094664 NM_024847 TSC_hg19_v1_chr16_+_18995296 AY236498 BC047719 AY263165 BC036205 AK293874 CU690480	182304	+	TSC_hg19_v1_chr16_+_18995511 CR933669 NM_001160364	182543	+	AK301636|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BC010281|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##D31885|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##NM_015161|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK291137|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK308092|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BX648446|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK300825|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK300869|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK307315|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BC001697|RPS15A|6210|ribosomal protein S15a##BC030569|RPS15A|6210|ribosomal protein S15a##BC032115|RPS15A|6210|ribosomal protein S15a##AK023088|RPS15A|6210|ribosomal protein S15a##AK130967|RPS15A|6210|ribosomal protein S15a##AK291988|RPS15A|6210|ribosomal protein S15a##AK311976|RPS15A|6210|ribosomal protein S15a##NM_001019|RPS15A|6210|ribosomal protein S15a##NM_001030009|RPS15A|6210|ribosomal protein S15a##BC105273|RPS15A|6210|ribosomal protein S15a##BC105292|RPS15A|6210|ribosomal protein S15a##NM_015092|SMG1|23049|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)##AB061371|SMG1|23049|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)##AK094664|TMC7|79905|transmembrane channel-like 7##NM_024847|TMC7|79905|transmembrane channel-like 7##AY236498|TMC7|79905|transmembrane channel-like 7##BC047719|TMC7|79905|transmembrane channel-like 7##AY263165|TMC7|79905|transmembrane channel-like 7##BC036205|TMC7|79905|transmembrane channel-like 7##AK293874|TMC7|79905|transmembrane channel-like 7##CR933669|TMC7|79905|transmembrane channel-like 7##NM_001160364|TMC7|79905|transmembrane channel-like 7	0.657348	denovo_WM_21:-70:0.549
chr11	11643598	11643703	reg1001172.p2	4.903	+	AK055111 BC037341 TSC_hg19_v1_chr11_-_11643550 BC060864 NM_198516	-72	-	TSC_hg19_v1_chr11_+_10879769 BC014360 BC036635	-763864	+	AK123233 TSC_hg19_v1_chr11_-_10879580 AK315033 BC047754 AF205600 BC017803 BC038508 NM_001143667 NM_021211	-764132	-	TSC_hg19_v1_chr11_+_11863036 AK127264 NM_017944	219366	+	TSC_hg19_v1_chr11_+_11863515 AK309240 CR749502	219841	+	TSC_hg19_v1_chr11_+_11863521 BC071559 AK027362 AK092290 AX747455	219918	+	AK055111|GALNTL4|374378|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4##BC037341|GALNTL4|374378|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4##BC060864|GALNTL4|374378|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4##NM_198516|GALNTL4|374378|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4##BC014360|LOC729013|729013|uncharacterized LOC729013##BC036635|LOC729013|729013|uncharacterized LOC729013##AK123233|ZBED5|58486|zinc finger, BED-type containing 5##AK315033|ZBED5|58486|zinc finger, BED-type containing 5##BC047754|ZBED5|58486|zinc finger, BED-type containing 5##AF205600|ZBED5|58486|zinc finger, BED-type containing 5##BC017803|ZBED5|58486|zinc finger, BED-type containing 5##BC038508|ZBED5|58486|zinc finger, BED-type containing 5##NM_001143667|ZBED5|58486|zinc finger, BED-type containing 5##NM_021211|ZBED5|58486|zinc finger, BED-type containing 5##AK127264|USP47|55031|ubiquitin specific peptidase 47##NM_017944|USP47|55031|ubiquitin specific peptidase 47##AK309240|USP47|55031|ubiquitin specific peptidase 47##BC071559|USP47|55031|ubiquitin specific peptidase 47##AK027362|USP47|55031|ubiquitin specific peptidase 47##AK092290|USP47|55031|ubiquitin specific peptidase 47	0.011266	
chr1	172501577	172501738	reg1001221.p2	4.900	+	TSC_hg19_v1_chr1_-_172413210 AL035301 BC063473 NM_002642 NM_153747	-88429	-	TSC_hg19_v1_chr1_-_172413207 AK308201	-88450	-	TSC_hg19_v1_chr1_-_172413202 BC006539	-88469	-	TSC_hg19_v1_chr1_+_172502152 AK302949 AJ250075 NM_014283	485	+	TSC_hg19_v1_chr1_+_172502291 NM_016227 AK302509 AL035291 BC137125 BC144487	724	+	D38122 AK314874 NM_000639 X89102 BC017502 U08137 AF288573 U11821 AB528416 DQ893466 DQ896147 CU675998 AY225406 AY858799	126592	+	AL035301|PIGC|5279|phosphatidylinositol glycan anchor biosynthesis, class C##BC063473|PIGC|5279|phosphatidylinositol glycan anchor biosynthesis, class C##NM_002642|PIGC|5279|phosphatidylinositol glycan anchor biosynthesis, class C##NM_153747|PIGC|5279|phosphatidylinositol glycan anchor biosynthesis, class C##AK308201|PIGC|5279|phosphatidylinositol glycan anchor biosynthesis, class C##BC006539|PIGC|5279|phosphatidylinositol glycan anchor biosynthesis, class C##AK302949|C1orf9|51430|chromosome 1 open reading frame 9##AJ250075|C1orf9|51430|chromosome 1 open reading frame 9##NM_014283|C1orf9|51430|chromosome 1 open reading frame 9##NM_016227|C1orf9|51430|chromosome 1 open reading frame 9##AK302509|C1orf9|51430|chromosome 1 open reading frame 9##AL035291|C1orf9|51430|chromosome 1 open reading frame 9##BC137125|C1orf9|51430|chromosome 1 open reading frame 9##BC144487|C1orf9|51430|chromosome 1 open reading frame 9##D38122|FASLG|356|Fas ligand (TNF superfamily, member 6)##AK314874|FASLG|356|Fas ligand (TNF superfamily, member 6)##NM_000639|FASLG|356|Fas ligand (TNF superfamily, member 6)##X89102|FASLG|356|Fas ligand (TNF superfamily, member 6)##BC017502|FASLG|356|Fas ligand (TNF superfamily, member 6)##U08137|FASLG|356|Fas ligand (TNF superfamily, member 6)##AF288573|FASLG|356|Fas ligand (TNF superfamily, member 6)##U11821|FASLG|356|Fas ligand (TNF superfamily, member 6)##DQ893466|FASLG|356|Fas ligand (TNF superfamily, member 6)##DQ896147|FASLG|356|Fas ligand (TNF superfamily, member 6)##AY225406|FASLG|356|Fas ligand (TNF superfamily, member 6)##AY858799|FASLG|356|Fas ligand (TNF superfamily, member 6)	0.892357	denovo_WM_21:-48:0.892
chr6	42952121	42952242	reg1000725.p1	4.895	+	AB208906 TSC_hg19_v1_chr6_-_42946954 D83703 NM_000287	-5220	-	AB051076 AB051077 AB051078 AB590555 BC033487 TSC_hg19_v1_chr6_-_42946920 BC048331 AK314237 AK225704	-5272	-	TSC_hg19_v1_chr6_+_42928491 BC032627 NM_018960 AF101477 AB590322 DQ890819 DQ893974	-23697	+	TSC_hg19_v1_chr6_+_42952307 AK299696	103	+	TSC_hg19_v1_chr6_+_42952326 AK290604	145	+	AK291797 TSC_hg19_v1_chr6_+_42952346 BC001175 NM_006245 NM_180976 NM_180977 D78360 BC010692 BC001095 AK122701 AB000635 AB000634 AB451342 AB451357 AB527701 EU446999	190	+	AB208906|PEX6|5190|peroxisomal biogenesis factor 6##D83703|PEX6|5190|peroxisomal biogenesis factor 6##NM_000287|PEX6|5190|peroxisomal biogenesis factor 6##AB051076|PEX6|5190|peroxisomal biogenesis factor 6##AB051077|PEX6|5190|peroxisomal biogenesis factor 6##AB051078|PEX6|5190|peroxisomal biogenesis factor 6##BC033487|PEX6|5190|peroxisomal biogenesis factor 6##BC048331|PEX6|5190|peroxisomal biogenesis factor 6##AK314237|PEX6|5190|peroxisomal biogenesis factor 6##AK225704|PEX6|5190|peroxisomal biogenesis factor 6##BC032627|GNMT|27232|glycine N-methyltransferase##NM_018960|GNMT|27232|glycine N-methyltransferase##AF101477|GNMT|27232|glycine N-methyltransferase##DQ890819|GNMT|27232|glycine N-methyltransferase##DQ893974|GNMT|27232|glycine N-methyltransferase##AK299696|PPP2R5D|5528|protein phosphatase 2, regulatory subunit B', delta##AK290604|PPP2R5D|5528|protein phosphatase 2, regulatory subunit B', delta##AK291797|PPP2R5D|5528|protein phosphatase 2, regulatory subunit B', delta##BC001175|PPP2R5D|5528|protein phosphatase 2, regulatory subunit B', delta##NM_006245|PPP2R5D|5528|protein phosphatase 2, regulatory subunit B', delta##NM_180976|PPP2R5D|5528|protein phosphatase 2, regulatory subunit B', delta##NM_180977|PPP2R5D|5528|protein phosphatase 2, regulatory subunit B', delta##D78360|PPP2R5D|5528|protein phosphatase 2, regulatory subunit B', delta##BC010692|PPP2R5D|5528|protein phosphatase 2, regulatory subunit B', delta##BC001095|PPP2R5D|5528|protein phosphatase 2, regulatory subunit B', delta##AK122701|PPP2R5D|5528|protein phosphatase 2, regulatory subunit B', delta##AB000635|PPP2R5D|5528|protein phosphatase 2, regulatory subunit B', delta##AB000634|PPP2R5D|5528|protein phosphatase 2, regulatory subunit B', delta##AB451342|PPP2R5D|5528|protein phosphatase 2, regulatory subunit B', delta##AB451357|PPP2R5D|5528|protein phosphatase 2, regulatory subunit B', delta##EU446999|PPP2R5D|5528|protein phosphatase 2, regulatory subunit B', delta	0.965698	denovo_WM_21:44:0.421	denovo_WM_21:96:0.490
chr11	105948037	105948140	reg1001053.p1	4.892	+	TSC_hg19_v1_chr11_-_105892952 AL834523 BC041118 AB058729 NM_032424	-55129	-	BC015199 NM_001112812 BC146816	-466658	+	NM_000829 NM_001077243 NM_001077244 TSC_hg19_v1_chr11_+_105480799 BC045546 BC142654 BC150209 BC035610	-467199	+	AF136978 AF151057 AF151838 AF302110 NM_015423 TSC_hg19_v1_chr11_+_105948388 BC016728 AK312529 BC015470 AK293362 AB463408 CU677695 DQ891342 DQ894524	277	+	NM_152433 NM_198439	376	-	BC085622 TSC_hg19_v1_chr11_-_106889260 BC130484 BC130488 BC144033 NM_000855 X63282 Z50053	941000	-	AL834523|KIAA1826|84437|KIAA1826##BC041118|KIAA1826|84437|KIAA1826##AB058729|KIAA1826|84437|KIAA1826##NM_032424|KIAA1826|84437|KIAA1826##BC015199|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##NM_001112812|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##BC146816|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##NM_000829|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##NM_001077243|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##NM_001077244|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##BC045546|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##BC142654|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##BC150209|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##BC035610|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##AF136978|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AF151057|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AF151838|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AF302110|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##NM_015423|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##BC016728|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AK312529|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##BC015470|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AK293362|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##DQ891342|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##DQ894524|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##NM_152433|KBTBD3|143879|kelch repeat and BTB (POZ) domain containing 3##NM_198439|KBTBD3|143879|kelch repeat and BTB (POZ) domain containing 3##BC130484|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##BC130488|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##BC144033|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##NM_000855|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##X63282|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##Z50053|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2	0.782441	denovo_WM_21:12:0.782
chr2	201936542	201936692	reg1000901.p2	4.889	+	NM_002491 BC018183 AF047183 AF035839 TSC_hg19_v1_chr2_+_201936724	-9	+	TSC_hg19_v1_chr2_-_201936395 AK124184 BC039295 NM_173822	-215	-	AK315104 TSC_hg19_v1_chr2_-_201936386 AL832346	-230	-	TSC_hg19_v1_chr2_-_201967706 D28373	31087	-	TSC_hg19_v1_chr2_+_201980874 AK296036 NM_001127184 NM_001202516 NM_001202517 NM_001202519 NM_003879 AK297387 AF005774	44278	+	AF009616 TSC_hg19_v1_chr2_+_201981056 AF010127 U97074 AK315924 BC001602 AB209600	44424	+	NM_002491|NDUFB3|4709|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa##BC018183|NDUFB3|4709|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa##AF047183|NDUFB3|4709|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa##AF035839|NDUFB3|4709|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa##AK124184|FAM126B|285172|family with sequence similarity 126, member B##BC039295|FAM126B|285172|family with sequence similarity 126, member B##NM_173822|FAM126B|285172|family with sequence similarity 126, member B##AK315104|FAM126B|285172|family with sequence similarity 126, member B##AL832346|FAM126B|285172|family with sequence similarity 126, member B##AK296036|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001127184|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001202516|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001202517|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001202519|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_003879|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AK297387|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AF005774|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AF009616|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AF010127|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##U97074|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AK315924|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##BC001602|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AB209600|CFLAR|8837|CASP8 and FADD-like apoptosis regulator	0.0	
chr15	89164421	89164560	reg1000926.p1	4.886	+	BC109060 BC109061 BC073867 AK054603 BC064591 AB073887 NM_001144074 NM_017996	-74639	-	TSC_hg19_v1_chr15_+_89010935 BC032378 BC012489 AK027059 AK026165 AK222933 AK315407 AK223152 BC000200 CU680342 CU689362 DQ891586 DQ894780 BC009451	-153564	+	AB049944 NM_022839 NM_176805	-153807	+	TSC_hg19_v1_chr15_+_89164583 NM_022767 AK308119 BC020988 AF318330	80	+	BC007922 NM_002201 AK307769 TSC_hg19_v1_chr15_+_89182194 BC016341 U88964	17696	+	TSC_hg19_v1_chr15_+_89346707 U13192 AK290723 NM_001135 NM_013227 BC036445	182196	+	BC109060|DET1|55070|de-etiolated homolog 1 (Arabidopsis)##BC109061|DET1|55070|de-etiolated homolog 1 (Arabidopsis)##BC073867|DET1|55070|de-etiolated homolog 1 (Arabidopsis)##AK054603|DET1|55070|de-etiolated homolog 1 (Arabidopsis)##BC064591|DET1|55070|de-etiolated homolog 1 (Arabidopsis)##AB073887|DET1|55070|de-etiolated homolog 1 (Arabidopsis)##NM_001144074|DET1|55070|de-etiolated homolog 1 (Arabidopsis)##NM_017996|DET1|55070|de-etiolated homolog 1 (Arabidopsis)##BC032378|MRPS11|64963|mitochondrial ribosomal protein S11##BC012489|MRPS11|64963|mitochondrial ribosomal protein S11##AK027059|MRPS11|64963|mitochondrial ribosomal protein S11##AK026165|MRPS11|64963|mitochondrial ribosomal protein S11##AK222933|MRPS11|64963|mitochondrial ribosomal protein S11##AK315407|MRPS11|64963|mitochondrial ribosomal protein S11##AK223152|MRPS11|64963|mitochondrial ribosomal protein S11##BC000200|MRPS11|64963|mitochondrial ribosomal protein S11##DQ891586|MRPS11|64963|mitochondrial ribosomal protein S11##DQ894780|MRPS11|64963|mitochondrial ribosomal protein S11##BC009451|MRPS11|64963|mitochondrial ribosomal protein S11##AB049944|MRPS11|64963|mitochondrial ribosomal protein S11##NM_022839|MRPS11|64963|mitochondrial ribosomal protein S11##NM_176805|MRPS11|64963|mitochondrial ribosomal protein S11##NM_022767|AEN|64782|apoptosis enhancing nuclease##AK308119|AEN|64782|apoptosis enhancing nuclease##BC020988|AEN|64782|apoptosis enhancing nuclease##AF318330|AEN|64782|apoptosis enhancing nuclease##BC007922|ISG20|3669|interferon stimulated exonuclease gene 20kDa##NM_002201|ISG20|3669|interferon stimulated exonuclease gene 20kDa##AK307769|ISG20|3669|interferon stimulated exonuclease gene 20kDa##BC016341|ISG20|3669|interferon stimulated exonuclease gene 20kDa##U88964|ISG20|3669|interferon stimulated exonuclease gene 20kDa##U13192|ACAN|176|aggrecan##AK290723|ACAN|176|aggrecan##NM_001135|ACAN|176|aggrecan##NM_013227|ACAN|176|aggrecan##BC036445|ACAN|176|aggrecan	1.827117	denovo_WM_21:-14:0.978	denovo_WM_21:27:0.849
chr17	21187866	21187983	reg1000924.p2	4.884	+	AK126856 NM_152914 BC029527 TSC_hg19_v1_chr17_-_21156754	-31258	-	TSC_hg19_v1_chr17_-_21117911 BC005268 NM_003876	-70019	-	TSC_hg19_v1_chr17_-_21117651 X51804	-70248	-	NM_145109 TSC_hg19_v1_chr17_+_21188018	68	+	TSC_hg19_v1_chr17_+_21188022 AK315505	100	+	BC032478 TSC_hg19_v1_chr17_+_21188087 AK093838 AK223490 D87116 CU689390 DQ894188 AB451226 AB451349 CR536514 CR541793 GQ225578	208	+	AK126856|C17orf103|256302|chromosome 17 open reading frame 103##NM_152914|C17orf103|256302|chromosome 17 open reading frame 103##BC029527|C17orf103|256302|chromosome 17 open reading frame 103##BC005268|TMEM11|8834|transmembrane protein 11##NM_003876|TMEM11|8834|transmembrane protein 11##X51804|TMEM11|8834|transmembrane protein 11##NM_145109|MAP2K3|5606|mitogen-activated protein kinase kinase 3##AK315505|MAP2K3|5606|mitogen-activated protein kinase kinase 3##BC032478|MAP2K3|5606|mitogen-activated protein kinase kinase 3##AK093838|MAP2K3|5606|mitogen-activated protein kinase kinase 3##AK223490|MAP2K3|5606|mitogen-activated protein kinase kinase 3##D87116|MAP2K3|5606|mitogen-activated protein kinase kinase 3##DQ894188|MAP2K3|5606|mitogen-activated protein kinase kinase 3##AB451226|MAP2K3|5606|mitogen-activated protein kinase kinase 3##AB451349|MAP2K3|5606|mitogen-activated protein kinase kinase 3##CR536514|MAP2K3|5606|mitogen-activated protein kinase kinase 3##CR541793|MAP2K3|5606|mitogen-activated protein kinase kinase 3##GQ225578|MAP2K3|5606|mitogen-activated protein kinase kinase 3	0.0	
chr19	46148872	46149026	reg1001303.p2	4.883	+	AK308580 AK296258 AK294668 NM_001193268 BC029304	-226	-	AK295905 NM_001193269	-1965	-	NM_001242348 BC007358	-4023	+	NM_000164 U39231 BC093723 BC101673 BC143300 BC143302 S79852	22558	+	BC000486 TSC_hg19_v1_chr19_-_46195193 U15008 AK291912	46247	-	NM_004597 NM_177542	46493	-	AK296258|EML2|24139|echinoderm microtubule associated protein like 2##AK294668|EML2|24139|echinoderm microtubule associated protein like 2##NM_001193268|EML2|24139|echinoderm microtubule associated protein like 2##BC029304|EML2|24139|echinoderm microtubule associated protein like 2##AK295905|EML2|24139|echinoderm microtubule associated protein like 2##NM_001193269|EML2|24139|echinoderm microtubule associated protein like 2##NM_001242348|LOC100287177|100287177|uncharacterized LOC100287177##BC007358|LOC100287177|100287177|uncharacterized LOC100287177##NM_000164|GIPR|2696|gastric inhibitory polypeptide receptor##U39231|GIPR|2696|gastric inhibitory polypeptide receptor##BC093723|GIPR|2696|gastric inhibitory polypeptide receptor##BC101673|GIPR|2696|gastric inhibitory polypeptide receptor##BC143300|GIPR|2696|gastric inhibitory polypeptide receptor##BC143302|GIPR|2696|gastric inhibitory polypeptide receptor##S79852|GIPR|2696|gastric inhibitory polypeptide receptor##BC000486|SNRPD2|6633|small nuclear ribonucleoprotein D2 polypeptide 16.5kDa##U15008|SNRPD2|6633|small nuclear ribonucleoprotein D2 polypeptide 16.5kDa##AK291912|SNRPD2|6633|small nuclear ribonucleoprotein D2 polypeptide 16.5kDa##NM_004597|SNRPD2|6633|small nuclear ribonucleoprotein D2 polypeptide 16.5kDa##NM_177542|SNRPD2|6633|small nuclear ribonucleoprotein D2 polypeptide 16.5kDa	1.024104	denovo_WM_21:-21:0.981
chr7	100136728	100136830	reg1000322.p2	4.883	+	AK124773 NM_173564	-55230	+	BC001966 BC031622 AK314824 TSC_hg19_v1_chr7_-_100076802 BC002972 BC010406 AK296580 AK297702 AK310800 BC001486 NM_030935	-59952	-	BC031966 NM_001004323	-74886	-	TSC_hg19_v1_chr7_+_100136826 NM_006076 BC009393	32	+	TSC_hg19_v1_chr7_+_100136847 AK314954 BC017329 AB527774 CU675942	128	+	NM_001168682	34490	-	AK124773|NYAP1|222950|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1##NM_173564|NYAP1|222950|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1##BC001966|TSC22D4|81628|TSC22 domain family, member 4##BC031622|TSC22D4|81628|TSC22 domain family, member 4##AK314824|TSC22D4|81628|TSC22 domain family, member 4##BC002972|TSC22D4|81628|TSC22 domain family, member 4##BC010406|TSC22D4|81628|TSC22 domain family, member 4##AK296580|TSC22D4|81628|TSC22 domain family, member 4##AK297702|TSC22D4|81628|TSC22 domain family, member 4##BC001486|TSC22D4|81628|TSC22 domain family, member 4##NM_030935|TSC22D4|81628|TSC22 domain family, member 4##BC031966|C7orf61|402573|chromosome 7 open reading frame 61##NM_001004323|C7orf61|402573|chromosome 7 open reading frame 61##NM_006076|AGFG2|3268|ArfGAP with FG repeats 2##BC009393|AGFG2|3268|ArfGAP with FG repeats 2##AK314954|AGFG2|3268|ArfGAP with FG repeats 2##BC017329|AGFG2|3268|ArfGAP with FG repeats 2##NM_001168682|SAP25|100316904|Sin3A-associated protein, 25kDa	2.793844	denovo_WM_21:-12:0.972	denovo_WM_21:19:0.880	denovo_WM_21:-93:0.942
chr16	1876841	1876934	reg1001114.p1	4.882	+	TSC_hg19_v1_chr16_-_1876812 AK308825 BC000840 AK299173 AK298174 AK299993	-59	-	TSC_hg19_v1_chr16_-_1876574 AK290155	-313	-	AB464593 DQ891534 DQ894723 AK292182 AK313198 M86826 AK315808 AK309598 AK303146 BC025681 NM_001146006 NM_004970	-33195	-	BC002627 AY576804 NM_001040427 NM_005326	280	-	TSC_hg19_v1_chr16_+_1877223 BC063017 AL136720 NM_001018104 NM_001142398 NM_031208 AK094199 AB528126 AM392782 CR533499 CU687630	360	+	TSC_hg19_v1_chr16_-_1922086 NM_152764	45203	-	AK308825|HAGH|3029|hydroxyacylglutathione hydrolase##BC000840|HAGH|3029|hydroxyacylglutathione hydrolase##AK299173|HAGH|3029|hydroxyacylglutathione hydrolase##AK298174|HAGH|3029|hydroxyacylglutathione hydrolase##AK299993|HAGH|3029|hydroxyacylglutathione hydrolase##AK290155|HAGH|3029|hydroxyacylglutathione hydrolase##DQ891534|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##DQ894723|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##AK292182|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##AK313198|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##M86826|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##AK315808|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##AK303146|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##BC025681|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##NM_001146006|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##NM_004970|IGFALS|3483|insulin-like growth factor binding protein, acid labile subunit##BC002627|HAGH|3029|hydroxyacylglutathione hydrolase##AY576804|HAGH|3029|hydroxyacylglutathione hydrolase##NM_001040427|HAGH|3029|hydroxyacylglutathione hydrolase##NM_005326|HAGH|3029|hydroxyacylglutathione hydrolase##BC063017|FAHD1|81889|fumarylacetoacetate hydrolase domain containing 1##AL136720|FAHD1|81889|fumarylacetoacetate hydrolase domain containing 1##NM_001018104|FAHD1|81889|fumarylacetoacetate hydrolase domain containing 1##NM_001142398|FAHD1|81889|fumarylacetoacetate hydrolase domain containing 1##NM_031208|FAHD1|81889|fumarylacetoacetate hydrolase domain containing 1##AK094199|FAHD1|81889|fumarylacetoacetate hydrolase domain containing 1##AM392782|FAHD1|81889|fumarylacetoacetate hydrolase domain containing 1##CR533499|FAHD1|81889|fumarylacetoacetate hydrolase domain containing 1##NM_152764|C16orf73|254528|chromosome 16 open reading frame 73	2.688211	denovo_WM_21:2:0.966	denovo_WM_21:-28:0.966	denovo_WM_21:34:0.757
chr15	65186277	65186399	reg1001040.p1	4.881	+	AK311036 NM_001195059 NM_025201 TSC_hg19_v1_chr15_+_65134113 AK096203 BC008744 AF494534	-52231	+	BC137503 BC137504 TSC_hg19_v1_chr15_-_65117814 BC018978 AK026345 EU084033 NM_025049 AB185926 AB185927	-68503	-	BC131612 BC148208 AY369207 NM_194272 TSC_hg19_v1_chr15_-_65067789 AK127873	-118592	-	TSC_hg19_v1_chr15_+_65204100 AK098736 NM_182703 AK075298 BC110610 AK307698	17751	+	TSC_hg19_v1_chr15_-_65281780 AF212231 NM_001127889	95471	-	TSC_hg19_v1_chr15_-_65282170 AK172849 AK225527 AK312943 BC000244	95796	-	NM_001195059|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##NM_025201|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##AK096203|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##BC008744|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##AF494534|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##BC137503|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##BC137504|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##BC018978|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AK026345|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##EU084033|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##NM_025049|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AB185926|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AB185927|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##BC131612|RBPMS2|348093|RNA binding protein with multiple splicing 2##BC148208|RBPMS2|348093|RNA binding protein with multiple splicing 2##AY369207|RBPMS2|348093|RNA binding protein with multiple splicing 2##NM_194272|RBPMS2|348093|RNA binding protein with multiple splicing 2##AK127873|RBPMS2|348093|RNA binding protein with multiple splicing 2##AK098736|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##NM_182703|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##AK075298|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##BC110610|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##AK307698|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##AF212231|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##NM_001127889|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##AK172849|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##AK225527|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##AK312943|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##BC000244|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)	0.0	
chr16	33293902	33294007	reg1000722.p1	4.878	+	AB023508 BC096733 BC098165 NM_001099687 NM_001205259 NM_001205260 NM_001205265 AK312220 CR541650	-31821	+	AL133588 NM_016212	-32440	+	AB023508 BC096733 BC098165 NM_001099687 NM_001205259 NM_001205260 NM_001205265 AK312220 CR541650	-88356	+	TSC_hg19_v1_chr16_-_46655275 EU176232 EU176536 EU176544 AK292164 AK310430 AK315706 AK055931 BC030699	13361318	-	TSC_hg19_v1_chr16_-_46655304 NM_024745	13361352	-	BC041367 BC010362 AK223218 AF191298 TSC_hg19_v1_chr16_-_46723091 AK001614 AF175265 AF186382 BC093036 AL136888	13429108	-	AB023508|TP53TG3|24150|TP53 target 3##BC096733|TP53TG3|24150|TP53 target 3##BC098165|TP53TG3|24150|TP53 target 3##NM_001099687|TP53TG3B|729355|TP53 target 3B##NM_001205259|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205260|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205265|TP53TG3B|729355|TP53 target 3B##AK312220|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##AL133588|TP53TG3|24150|TP53 target 3##NM_016212|TP53TG3|24150|TP53 target 3##AB023508|TP53TG3|24150|TP53 target 3##BC096733|TP53TG3|24150|TP53 target 3##BC098165|TP53TG3|24150|TP53 target 3##NM_001099687|TP53TG3B|729355|TP53 target 3B##NM_001205259|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205260|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205265|TP53TG3B|729355|TP53 target 3B##AK312220|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##EU176232|SHCBP1|79801|SHC SH2-domain binding protein 1##EU176536|SHCBP1|79801|SHC SH2-domain binding protein 1##EU176544|SHCBP1|79801|SHC SH2-domain binding protein 1##AK292164|SHCBP1|79801|SHC SH2-domain binding protein 1##AK310430|SHCBP1|79801|SHC SH2-domain binding protein 1##AK315706|SHCBP1|79801|SHC SH2-domain binding protein 1##AK055931|SHCBP1|79801|SHC SH2-domain binding protein 1##BC030699|SHCBP1|79801|SHC SH2-domain binding protein 1##NM_024745|SHCBP1|79801|SHC SH2-domain binding protein 1##BC041367|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##BC010362|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AK223218|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF191298|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AK001614|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF175265|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF186382|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##BC093036|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AL136888|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)	0.0	
chr22	23412295	23412379	reg1000798.p1	4.873	+	AJ318021 AJ318022 NM_001178126 AJ319670 BC012159 AJ319671 AJ319669	-182254	+	TSC_hg19_v1_chr22_+_23222900 AK127411 S77601 X57802 X57803 X57816 X57818 AB369252 AF026919 AF026925 AY190825 L26400 AF490955 AF490961	-189408	+	TSC_hg19_v1_chr22_+_23213675 BC020236 CU676520	-198644	+	TSC_hg19_v1_chr22_+_23412527 BC037333 BC026342 NM_002073	179	+	AK312519 TSC_hg19_v1_chr22_+_23412728 AK293653	392	+	BC008986 AF133587 NM_014433 AK299530 AK310327	71906	-	AJ318021|IGLL5|100423062|immunoglobulin lambda-like polypeptide 5##AJ318022|IGLL5|100423062|immunoglobulin lambda-like polypeptide 5##NM_001178126|IGLL5|100423062|immunoglobulin lambda-like polypeptide 5##AJ319670|IGLL5|100423062|immunoglobulin lambda-like polypeptide 5##BC012159|IGLC1|3537|immunoglobulin lambda constant 1 (Mcg marker)##AJ319671|IGLL5|100423062|immunoglobulin lambda-like polypeptide 5##AJ319669|IGLL5|100423062|immunoglobulin lambda-like polypeptide 5##AB369252|CYAT1|100290481|immunoglobulin lambda light chain-like##BC020236|IGLV4-3|28786|immunoglobulin lambda variable 4-3##BC037333|GNAZ|2781|guanine nucleotide binding protein (G protein), alpha z polypeptide##BC026342|GNAZ|2781|guanine nucleotide binding protein (G protein), alpha z polypeptide##NM_002073|GNAZ|2781|guanine nucleotide binding protein (G protein), alpha z polypeptide##AK312519|GNAZ|2781|guanine nucleotide binding protein (G protein), alpha z polypeptide##AK293653|GNAZ|2781|guanine nucleotide binding protein (G protein), alpha z polypeptide##BC008986|RTDR1|27156|rhabdoid tumor deletion region gene 1##AF133587|RTDR1|27156|rhabdoid tumor deletion region gene 1##NM_014433|RTDR1|27156|rhabdoid tumor deletion region gene 1##AK299530|RTDR1|27156|rhabdoid tumor deletion region gene 1##AK310327|RTDR1|27156|rhabdoid tumor deletion region gene 1	0.0	
chr1	77630338	77630420	reg1001839.p2	4.872	+	TSC_hg19_v1_chr1_+_77333164 AK095758 AK300902 AK295019 BC001201 NM_030965	-297208	+	TSC_hg19_v1_chr1_+_77333125 AK056241	-297252	+	TSC_hg19_v1_chr1_+_77165439 D28460	-464939	+	Y07596 CU676676 AF022913 BC020737 TSC_hg19_v1_chr1_-_77685112 BC026186 AK304340 AK313015 BX648473 NM_005482	54724	-	TSC_hg19_v1_chr1_+_77747603 AF445193 NM_174858	117252	+	TSC_hg19_v1_chr1_+_77747727 BC036666 AK090967 AX746708	117355	+	AK095758|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##AK300902|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##AK295019|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##BC001201|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##NM_030965|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##AK056241|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##D28460|TPI1|7167|triosephosphate isomerase 1##Y07596|PIGK|10026|phosphatidylinositol glycan anchor biosynthesis, class K##AF022913|PIGK|10026|phosphatidylinositol glycan anchor biosynthesis, class K##BC020737|PIGK|10026|phosphatidylinositol glycan anchor biosynthesis, class K##BC026186|PIGK|10026|phosphatidylinositol glycan anchor biosynthesis, class K##AK304340|PIGK|10026|phosphatidylinositol glycan anchor biosynthesis, class K##AK313015|PIGK|10026|phosphatidylinositol glycan anchor biosynthesis, class K##BX648473|PIGK|10026|phosphatidylinositol glycan anchor biosynthesis, class K##NM_005482|PIGK|10026|phosphatidylinositol glycan anchor biosynthesis, class K##AF445193|AK5|26289|adenylate kinase 5##NM_174858|AK5|26289|adenylate kinase 5##BC036666|AK5|26289|adenylate kinase 5##AK090967|AK5|26289|adenylate kinase 5	0.0	
chr5	108084532	108084638	reg1000859.p1	4.872	+	AK293376 J03358 NM_005246 AK296874	-1023	+	BC011940 TSC_hg19_v1_chr5_-_108063984 AB593118 AK126449	-20605	-	BC063316 NM_001163315	-366787	-	TSC_hg19_v1_chr5_+_108084650 AK299855 BC058030	87	+	BC030826 AB007898 TSC_hg19_v1_chr5_-_108745619 AK291759 NM_014819	661036	-	TSC_hg19_v1_chr5_+_109025072 BC031659	940479	+	AK293376|FER|2241|fer (fps/fes related) tyrosine kinase##J03358|FER|2241|fer (fps/fes related) tyrosine kinase##NM_005246|FER|2241|fer (fps/fes related) tyrosine kinase##AK296874|FER|2241|fer (fps/fes related) tyrosine kinase##AB593118|HP07349|100652853|uncharacterized protein HP07349##BC063316|FBXL17|64839|F-box and leucine-rich repeat protein 17##NM_001163315|FBXL17|64839|F-box and leucine-rich repeat protein 17##AK299855|FER|2241|fer (fps/fes related) tyrosine kinase##BC058030|FER|2241|fer (fps/fes related) tyrosine kinase##BC030826|PJA2|9867|praja ring finger 2##AB007898|PJA2|9867|praja ring finger 2##AK291759|PJA2|9867|praja ring finger 2##NM_014819|PJA2|9867|praja ring finger 2##BC031659|MAN2A1|4124|mannosidase, alpha, class 2A, member 1	1.686592	denovo_WM_21:33:0.849	denovo_WM_21:-43:0.837
chr19	49298535	49298605	reg1001197.p1	4.870	+	AY359086 NM_019113 AB021975 AB590410 DQ891786 DQ894970	-39152	+	D87935 D87936 D87937 NM_000148	-39924	-	AB195682 BC034769 NM_182575 AK301750	-48475	-	AK310243 U68418 CU674922 DQ892350 DQ895554 AF268047 AF268048 TSC_hg19_v1_chr19_-_49314287 BC001900 AK093627 AK309428 AK223522 AK310101 AK314548 NM_001164773 NM_001190	15678	-	AB528622 CU675337 TSC_hg19_v1_chr19_-_49339769 BC006283 BC006294 AK307437 AF126781	41204	-	TSC_hg19_v1_chr19_-_49339923 NM_016246	41353	-	AY359086|FGF21|26291|fibroblast growth factor 21##NM_019113|FGF21|26291|fibroblast growth factor 21##AB021975|FGF21|26291|fibroblast growth factor 21##DQ891786|FGF21|26291|fibroblast growth factor 21##DQ894970|FGF21|26291|fibroblast growth factor 21##D87935|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##D87936|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##D87937|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##NM_000148|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##AB195682|IZUMO1|284359|izumo sperm-egg fusion 1##BC034769|IZUMO1|284359|izumo sperm-egg fusion 1##NM_182575|IZUMO1|284359|izumo sperm-egg fusion 1##AK301750|IZUMO1|284359|izumo sperm-egg fusion 1##AK310243|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##U68418|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##DQ892350|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##DQ895554|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AF268047|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AF268048|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##BC001900|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK093627|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK309428|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK223522|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK310101|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK314548|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##NM_001164773|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##NM_001190|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##BC006283|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##BC006294|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##AK307437|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##AF126781|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##NM_016246|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14	0.0	
chr1	151227059	151227200	reg1000765.p1	4.865	+	TSC_hg19_v1_chr1_+_151171050 AK309826 NM_001135636 NM_001135637 NM_001135638 NM_003557 AK295691 BC007833 U78576 BC007005 U78577 U78575 AK291015	-56096	+	TSC_hg19_v1_chr1_-_151162674 AK310045 DQ655941	-64456	-	DQ892940 DQ896189 AB464341 BT019356 BT019357 AK222935 AK222939 TSC_hg19_v1_chr1_-_151162644 BC003151 D43642 NM_005997 AK225130 AK297565	-64508	-	TSC_hg19_v1_chr1_+_151227206 NM_002810 U24704	68	+	TSC_hg19_v1_chr1_+_151227209 BC072008	92	+	TSC_hg19_v1_chr1_+_151227240 AB033605 BC002365 AB527552	118	+	AK309826|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##NM_001135636|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##NM_001135637|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##NM_001135638|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##NM_003557|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##AK295691|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##BC007833|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##U78576|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##U78577|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##U78575|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##AK291015|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##AK310045|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##DQ655941|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##DQ892940|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##DQ896189|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##BT019356|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##BT019357|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##AK222935|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##AK222939|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##BC003151|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##D43642|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##NM_005997|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##AK225130|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##AK297565|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##NM_002810|PSMD4|5710|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4##U24704|PSMD4|5710|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4##BC072008|PSMD4|5710|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4##AB033605|PSMD4|5710|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4##BC002365|PSMD4|5710|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	0.701523	denovo_WM_21:47:0.212	denovo_WM_21:69:0.490
chr1	31769712	31769820	reg1001033.p1	4.858	+	DQ893627 DQ895442 TSC_hg19_v1_chr1_-_31769633 AK313800 AF090988 AK074516 EF011621 BC001494 NM_004814 AK298823	-136	-	NM_024522 TSC_hg19_v1_chr1_-_31712735	-57031	-	AK299507 TSC_hg19_v1_chr1_-_31712475	-57326	-	TSC_hg19_v1_chr1_+_31769844 AK022506 NM_016505	69	+	TSC_hg19_v1_chr1_+_31769878 AK024049 AK307478 AF151085 AK001929 AK302248 AK302343 BC050609 BC007446 AF151077 BC000685 AF247661	157	+	S67314 AK314122 BT006727 CR456867 DQ893154 DQ896449 Y10255 X56549 BC007021 NM_004102	76104	-	DQ893627|SNRNP40|9410|small nuclear ribonucleoprotein 40kDa (U5)##DQ895442|SNRNP40|9410|small nuclear ribonucleoprotein 40kDa (U5)##AK313800|SNRNP40|9410|small nuclear ribonucleoprotein 40kDa (U5)##AF090988|SNRNP40|9410|small nuclear ribonucleoprotein 40kDa (U5)##AK074516|SNRNP40|9410|small nuclear ribonucleoprotein 40kDa (U5)##EF011621|SNRNP40|9410|small nuclear ribonucleoprotein 40kDa (U5)##BC001494|SNRNP40|9410|small nuclear ribonucleoprotein 40kDa (U5)##NM_004814|SNRNP40|9410|small nuclear ribonucleoprotein 40kDa (U5)##AK298823|SNRNP40|9410|small nuclear ribonucleoprotein 40kDa (U5)##NM_024522|NKAIN1|79570|Na+/K+ transporting ATPase interacting 1##AK299507|NKAIN1|79570|Na+/K+ transporting ATPase interacting 1##AK022506|ZCCHC17|51538|zinc finger, CCHC domain containing 17##NM_016505|ZCCHC17|51538|zinc finger, CCHC domain containing 17##AK024049|ZCCHC17|51538|zinc finger, CCHC domain containing 17##AK307478|ZCCHC17|51538|zinc finger, CCHC domain containing 17##AF151085|ZCCHC17|51538|zinc finger, CCHC domain containing 17##AK001929|ZCCHC17|51538|zinc finger, CCHC domain containing 17##AK302248|ZCCHC17|51538|zinc finger, CCHC domain containing 17##AK302343|ZCCHC17|51538|zinc finger, CCHC domain containing 17##BC050609|ZCCHC17|51538|zinc finger, CCHC domain containing 17##BC007446|ZCCHC17|51538|zinc finger, CCHC domain containing 17##AF151077|ZCCHC17|51538|zinc finger, CCHC domain containing 17##BC000685|ZCCHC17|51538|zinc finger, CCHC domain containing 17##AF247661|ZCCHC17|51538|zinc finger, CCHC domain containing 17##S67314|FABP3|2170|fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor)##AK314122|FABP3|2170|fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor)##BT006727|FABP3|2170|fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor)##CR456867|FABP3|2170|fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor)##DQ893154|FABP3|2170|fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor)##DQ896449|FABP3|2170|fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor)##Y10255|FABP3|2170|fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor)##X56549|FABP3|2170|fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor)##BC007021|FABP3|2170|fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor)##NM_004102|FABP3|2170|fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor)	0.392452	denovo_WM_21:-54:0.377
chr1	43824536	43824643	reg1001308.p1	4.856	+	NM_005373 AB463906 DQ234353 M90102 M90103	-21093	+	NM_001253357 NM_005424 AK307639 BC038239 AK300399 AK225560 AF217976 AK300623 X60957 AB385197 CU691552 EU826586 EU826587 EU826588 EU826589 EU826590	-57936	+	BC041633 NM_182517 NM_001164829	-73327	-	AK303844 TSC_hg19_v1_chr1_+_43824652 BC001088 BC012827 NM_001255 AK302539 U05340 BC010044 BC009425 BC009426 BC012803 BC013303 BC024257 BC031294 AK225504 AK312780 BC015998 BC110321 BC000624 BC006272 AF099644 AB590358 DQ892290 DQ895489 EU831627 EU831712 CU674302 CU675321 CU679585 BT007388	153	+	TSC_hg19_v1_chr1_-_43833649 AK130174 BC000618	9046	-	TSC_hg19_v1_chr1_-_43833683 AF336793 AK001653 BC095456 AK298163	9088	-	NM_005373|MPL|4352|myeloproliferative leukemia virus oncogene##DQ234353|MPL|4352|myeloproliferative leukemia virus oncogene##M90102|MPL|4352|myeloproliferative leukemia virus oncogene##M90103|MPL|4352|myeloproliferative leukemia virus oncogene##NM_001253357|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##NM_005424|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##AK307639|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##BC038239|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##AK300399|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##AK225560|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##AF217976|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##AK300623|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##X60957|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##EU826586|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##EU826587|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##EU826588|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##EU826589|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##EU826590|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##BC041633|C1orf210|149466|chromosome 1 open reading frame 210##NM_182517|C1orf210|149466|chromosome 1 open reading frame 210##NM_001164829|C1orf210|149466|chromosome 1 open reading frame 210##AK303844|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BC001088|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BC012827|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##NM_001255|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##AK302539|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##U05340|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BC010044|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BC009425|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BC009426|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BC012803|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BC013303|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BC024257|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BC031294|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##AK225504|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##AK312780|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BC015998|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BC110321|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BC000624|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BC006272|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##AF099644|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##DQ892290|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##DQ895489|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##EU831627|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##EU831712|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BT007388|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##AK130174|ELOVL1|64834|ELOVL fatty acid elongase 1##BC000618|ELOVL1|64834|ELOVL fatty acid elongase 1##AF336793|ELOVL1|64834|ELOVL fatty acid elongase 1##AK001653|ELOVL1|64834|ELOVL fatty acid elongase 1##BC095456|ELOVL1|64834|ELOVL fatty acid elongase 1##AK298163|ELOVL1|64834|ELOVL fatty acid elongase 1	1.04621	denovo_WM_21:11:0.849
chr8	37619981	37620112	reg1001129.p1	4.852	+	TSC_hg19_v1_chr8_+_37595372 AB463029 AM393041 AM393068 CU690572	-24643	+	TSC_hg19_v1_chr8_+_37594200 BC067765 NM_001003790 BC048308	-25819	+	TSC_hg19_v1_chr8_+_37594171 BC005950	-25874	+	NM_007198 TSC_hg19_v1_chr8_+_37620111 BC012334 AK021923	63	+	TSC_hg19_v1_chr8_+_37620124 AL136616	76	+	TSC_hg19_v1_chr8_+_37620162 AK291135 CR533532 EU831636 EU831720	130	+	BC067765|ERLIN2|11160|ER lipid raft associated 2##NM_001003790|ERLIN2|11160|ER lipid raft associated 2##BC048308|ERLIN2|11160|ER lipid raft associated 2##BC005950|ERLIN2|11160|ER lipid raft associated 2##NM_007198|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##BC012334|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##AK021923|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##AL136616|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##AK291135|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##CR533532|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##EU831636|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##EU831720|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)	0.094341	
chr16	74729824	74729966	reg1001287.p1	4.850	+	TSC_hg19_v1_chr16_-_74700775 NM_018124	-29118	-	TSC_hg19_v1_chr16_-_74700758 AK291200	-29143	-	TSC_hg19_v1_chr16_-_74700738 BC059371	-29165	-	BC028141 AK091708 AX747141 NM_001142497 NM_152649	4842	-	TSC_hg19_v1_chr16_-_74808693 AK315512 BC002679 BC004263	78690	-	BC017049 TSC_hg19_v1_chr16_-_74808722 AK058016 AK303878 NM_024306	78829	-	NM_018124|RFWD3|55159|ring finger and WD repeat domain 3##AK291200|RFWD3|55159|ring finger and WD repeat domain 3##BC059371|RFWD3|55159|ring finger and WD repeat domain 3##BC028141|MLKL|197259|mixed lineage kinase domain-like##AK091708|MLKL|197259|mixed lineage kinase domain-like##NM_001142497|MLKL|197259|mixed lineage kinase domain-like##NM_152649|MLKL|197259|mixed lineage kinase domain-like##AK315512|FA2H|79152|fatty acid 2-hydroxylase##BC002679|FA2H|79152|fatty acid 2-hydroxylase##BC004263|FA2H|79152|fatty acid 2-hydroxylase##BC017049|FA2H|79152|fatty acid 2-hydroxylase##AK058016|FA2H|79152|fatty acid 2-hydroxylase##AK303878|FA2H|79152|fatty acid 2-hydroxylase##NM_024306|FA2H|79152|fatty acid 2-hydroxylase	0.033302	
chrX	103588508	103588633	reg1001043.p2	4.849	+	BC042633 AY114148 BC053599 NM_153448 AK097704	-88984	-	TSC_hg19_v1_chrX_+_103411251 BC017665	-177303	+	TSC_hg19_v1_chrX_+_103411133 AK091221 AX746858 BC057847 NM_207318	-177446	+	AK290196 TSC_hg19_v1_chrX_+_103810879	222309	+	TSC_hg19_v1_chrX_+_103810991 AJ272208 NM_017416	222422	+	BC108734 AF285597 BC042547 NM_031274	876783	-	BC042633|ESX1|80712|ESX homeobox 1##AY114148|ESX1|80712|ESX homeobox 1##BC053599|ESX1|80712|ESX homeobox 1##NM_153448|ESX1|80712|ESX homeobox 1##AK097704|ESX1|80712|ESX homeobox 1##BC017665|FAM199X|139231|family with sequence similarity 199, X-linked##AK091221|FAM199X|139231|family with sequence similarity 199, X-linked##BC057847|FAM199X|139231|family with sequence similarity 199, X-linked##NM_207318|FAM199X|139231|family with sequence similarity 199, X-linked##AK290196|IL1RAPL2|26280|interleukin 1 receptor accessory protein-like 2##AJ272208|IL1RAPL2|26280|interleukin 1 receptor accessory protein-like 2##NM_017416|IL1RAPL2|26280|interleukin 1 receptor accessory protein-like 2##BC108734|TEX13A|56157|testis expressed 13A##AF285597|TEX13A|56157|testis expressed 13A##BC042547|TEX13A|56157|testis expressed 13A##NM_031274|TEX13A|56157|testis expressed 13A	0.0	
chr17	21179091	21179276	reg1001022.p2	4.845	+	AK126856 NM_152914 BC029527 TSC_hg19_v1_chr17_-_21156754	-22517	-	TSC_hg19_v1_chr17_-_21117911 BC005268 NM_003876	-61278	-	TSC_hg19_v1_chr17_-_21117651 X51804	-61507	-	NM_145109 TSC_hg19_v1_chr17_+_21188018	8809	+	TSC_hg19_v1_chr17_+_21188022 AK315505	8841	+	BC032478 TSC_hg19_v1_chr17_+_21188087 AK093838 AK223490 D87116 CU689390 DQ894188 AB451226 AB451349 CR536514 CR541793 GQ225578	8949	+	AK126856|C17orf103|256302|chromosome 17 open reading frame 103##NM_152914|C17orf103|256302|chromosome 17 open reading frame 103##BC029527|C17orf103|256302|chromosome 17 open reading frame 103##BC005268|TMEM11|8834|transmembrane protein 11##NM_003876|TMEM11|8834|transmembrane protein 11##X51804|TMEM11|8834|transmembrane protein 11##NM_145109|MAP2K3|5606|mitogen-activated protein kinase kinase 3##AK315505|MAP2K3|5606|mitogen-activated protein kinase kinase 3##BC032478|MAP2K3|5606|mitogen-activated protein kinase kinase 3##AK093838|MAP2K3|5606|mitogen-activated protein kinase kinase 3##AK223490|MAP2K3|5606|mitogen-activated protein kinase kinase 3##D87116|MAP2K3|5606|mitogen-activated protein kinase kinase 3##DQ894188|MAP2K3|5606|mitogen-activated protein kinase kinase 3##AB451226|MAP2K3|5606|mitogen-activated protein kinase kinase 3##AB451349|MAP2K3|5606|mitogen-activated protein kinase kinase 3##CR536514|MAP2K3|5606|mitogen-activated protein kinase kinase 3##CR541793|MAP2K3|5606|mitogen-activated protein kinase kinase 3##GQ225578|MAP2K3|5606|mitogen-activated protein kinase kinase 3	0.993855	denovo_WM_21:-2:0.994
chr10	97453703	97453842	reg1000964.p1	4.844	+	BC061582 TSC_hg19_v1_chr10_-_97453684 CU686635 AY359022 AL050022 AK299141 AK075357 AK098295	-126	-	TSC_hg19_v1_chr10_-_97416598 NM_001017423 NM_002860	-37191	-	TSC_hg19_v1_chr10_-_97416472 U68758 U76542 BC106054 AK225455 AK225465 AK226032 AK295487 X94453 AK299557 AK312271 BC117240 BC117242 BC143930	-37335	-	BC068449 DQ278872 NM_001143973 NM_015631	127	-	AJ133133 AJ133134 NM_001098175	17763	+	NM_001164178 NM_001164181 AK301459 AK298648 AK098278 NM_001164179 NM_001164182 NM_001164183 NM_001776	61768	+	BC061582|TCTN3|26123|tectonic family member 3##AY359022|TCTN3|26123|tectonic family member 3##AL050022|TCTN3|26123|tectonic family member 3##AK299141|TCTN3|26123|tectonic family member 3##AK075357|TCTN3|26123|tectonic family member 3##AK098295|TCTN3|26123|tectonic family member 3##NM_001017423|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##NM_002860|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##U68758|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##U76542|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##BC106054|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##AK225455|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##AK225465|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##AK226032|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##AK295487|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##X94453|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##AK299557|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##AK312271|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##BC117240|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##BC117242|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##BC143930|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##BC068449|TCTN3|26123|tectonic family member 3##DQ278872|TCTN3|26123|tectonic family member 3##NM_001143973|TCTN3|26123|tectonic family member 3##NM_015631|TCTN3|26123|tectonic family member 3##AJ133133|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AJ133134|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001098175|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164178|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164181|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK301459|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK298648|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK098278|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164179|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164182|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164183|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001776|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1	1.85199	denovo_WM_21:0:0.986	denovo_WM_21:34:0.866
chr1	67390473	67390585	reg1000923.p1	4.844	+	TSC_hg19_v1_chr1_-_67390540 BC032406 HQ258529 AK292830 BC126379 BC126381 AK091603 BX648840 NM_024763 NM_207014	0	-	BC101646 BC101648 AF133816 AY359030 NM_005478	-123594	-	TSC_hg19_v1_chr1_+_67218151 BC106885 AK307100 AK307878	-172364	+	AK302061 NM_001077700 NM_001077702 NM_001077703 NM_001146110 NM_001146111 NM_001146112 NM_001146113 NM_020948 TSC_hg19_v1_chr1_+_67390672 AL831987 AF515447 AF515448 AY124186 AY124187 AY124189 AY124190 AY124192 AY124193 BC066898 AK307717 BC108726 CR627441 AB590466	130	+	TSC_hg19_v1_chr1_+_67395952 AF515446 AY124188 AY124191 AY124194 NM_001077701 NM_001077704 BC017423	5438	+	AB385301 BC093786 BC112031 AB044343 TSC_hg19_v1_chr1_-_67519828 D87449	129247	-	BC032406|WDR78|79819|WD repeat domain 78##HQ258529|WDR78|79819|WD repeat domain 78##AK292830|WDR78|79819|WD repeat domain 78##BC126379|WDR78|79819|WD repeat domain 78##BC126381|WDR78|79819|WD repeat domain 78##AK091603|WDR78|79819|WD repeat domain 78##BX648840|WDR78|79819|WD repeat domain 78##NM_024763|WDR78|79819|WD repeat domain 78##NM_207014|WDR78|79819|WD repeat domain 78##BC101646|INSL5|10022|insulin-like 5##BC101648|INSL5|10022|insulin-like 5##AF133816|INSL5|10022|insulin-like 5##AY359030|INSL5|10022|insulin-like 5##NM_005478|INSL5|10022|insulin-like 5##BC106885|TCTEX1D1|200132|Tctex1 domain containing 1##AK307100|TCTEX1D1|200132|Tctex1 domain containing 1##AK307878|TCTEX1D1|200132|Tctex1 domain containing 1##AK302061|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##NM_001077700|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##NM_001077702|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##NM_001077703|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##NM_001146110|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##NM_001146111|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##NM_001146112|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##NM_001146113|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##NM_020948|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AL831987|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AF515447|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AF515448|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AY124186|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AY124187|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AY124189|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AY124190|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AY124192|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AY124193|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##BC066898|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AK307717|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##BC108726|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##CR627441|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AF515446|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AY124188|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AY124191|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AY124194|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##NM_001077701|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##NM_001077704|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##BC017423|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##BC093786|SLC35D1|23169|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1##BC112031|SLC35D1|23169|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1##AB044343|SLC35D1|23169|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1##D87449|SLC35D1|23169|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	0.013585	
chrY	58833965	58834048	reg1000864.p1	4.839	+	AK292375 BC033041 NM_001003894 NM_001003895 NM_004680 NM_170723 AK292318 AF000981 AF080597	-31065732	+	AF000980 NM_001002760 NM_001002761 NM_004678	-31635756	-	NM_001005375 NM_020364 NM_020420 NM_001005785 NM_001005786 AF414184 BC047480 BC036648 BC047617 U21663 AF248480 AF248482 AF248481 BC113005 BC113006	-31853933	+	AK289543 AK311508 NM_005840 AK125483	266434	+	NM_001145149 NM_001185183 NM_005638 BC056141 AK312658 AK295605 X92396 AK293525 AK297385 AJ549301 AJ295938 AK222794 BC020969	379991	+	M84747 NM_002186 AK303178 BC025298 BC051337 S71404 CU690808	496341	+	AK292375|CDY1|9085|chromodomain protein, Y-linked, 1##BC033041|CDY1|9085|chromodomain protein, Y-linked, 1##NM_001003894|CDY1B|253175|chromodomain protein, Y-linked, 1B##NM_001003895|CDY1B|253175|chromodomain protein, Y-linked, 1B##NM_004680|CDY1|9085|chromodomain protein, Y-linked, 1##NM_170723|CDY1|9085|chromodomain protein, Y-linked, 1##AK292318|CDY1B|253175|chromodomain protein, Y-linked, 1B##AF000981|CDY1|9085|chromodomain protein, Y-linked, 1##AF080597|CDY1|9085|chromodomain protein, Y-linked, 1##AF000980|BPY2|9083|basic charge, Y-linked, 2##NM_001002760|BPY2B|442867|basic charge, Y-linked, 2B##NM_001002761|BPY2C|442868|basic charge, Y-linked, 2C##NM_004678|BPY2|9083|basic charge, Y-linked, 2##NM_001005375|DAZ4|57135|deleted in azoospermia 4##NM_020364|DAZ3|57054|deleted in azoospermia 3##NM_020420|DAZ4|57135|deleted in azoospermia 4##NM_001005785|DAZ2|57055|deleted in azoospermia 2##NM_001005786|DAZ2|57055|deleted in azoospermia 2##AF414184|DAZ2|57055|deleted in azoospermia 2##BC047480|DAZ4|57135|deleted in azoospermia 4##BC036648|DAZ3|57054|deleted in azoospermia 3##BC047617|DAZ4|57135|deleted in azoospermia 4##U21663|DAZ2|57055|deleted in azoospermia 2##AF248480|DAZ2|57055|deleted in azoospermia 2##AF248482|DAZ4|57135|deleted in azoospermia 4##AF248481|DAZ3|57054|deleted in azoospermia 3##BC113005|DAZ3|57054|deleted in azoospermia 3##BC113006|DAZ2|57055|deleted in azoospermia 2##AK289543|SPRY3|10251|sprouty homolog 3 (Drosophila)##NM_005840|SPRY3|10251|sprouty homolog 3 (Drosophila)##AK125483|SPRY3|10251|sprouty homolog 3 (Drosophila)##NM_001145149|VAMP7|6845|vesicle-associated membrane protein 7##NM_001185183|VAMP7|6845|vesicle-associated membrane protein 7##NM_005638|VAMP7|6845|vesicle-associated membrane protein 7##BC056141|VAMP7|6845|vesicle-associated membrane protein 7##AK312658|VAMP7|6845|vesicle-associated membrane protein 7##AK295605|VAMP7|6845|vesicle-associated membrane protein 7##X92396|VAMP7|6845|vesicle-associated membrane protein 7##AK293525|VAMP7|6845|vesicle-associated membrane protein 7##AK297385|VAMP7|6845|vesicle-associated membrane protein 7##AJ549301|VAMP7|6845|vesicle-associated membrane protein 7##AJ295938|VAMP7|6845|vesicle-associated membrane protein 7##AK222794|VAMP7|6845|vesicle-associated membrane protein 7##M84747|IL9R|3581|interleukin 9 receptor##NM_002186|IL9R|3581|interleukin 9 receptor##AK303178|IL9R|3581|interleukin 9 receptor##BC025298|IL9R|3581|interleukin 9 receptor##BC051337|IL9R|3581|interleukin 9 receptor##S71404|IL9R|3581|interleukin 9 receptor	0.124626	
chr17	60143279	60143378	reg1001242.p2	4.837	+	TSC_hg19_v1_chr17_-_60142600 BC140891 AF117754 NM_005121	-701	-	TSC_hg19_v1_chr17_-_60005339 AB033113 AK308307 AK299032 AL136800 NM_020748	-137986	-	BC101472 BC101474 AF360549 TSC_hg19_v1_chr17_-_59940873 NM_032043	-202534	-	NM_001144933	304250	+	AK098684 NM_173503 BC101752 BC101778	314598	+	TSC_hg19_v1_chr17_+_60501257 NM_181725 BC006985 AB590991 AF161384 AK022822 AF161385	357935	+	BC140891|MED13|9969|mediator complex subunit 13##AF117754|MED13|9969|mediator complex subunit 13##NM_005121|MED13|9969|mediator complex subunit 13##AB033113|INTS2|57508|integrator complex subunit 2##AK308307|INTS2|57508|integrator complex subunit 2##AK299032|INTS2|57508|integrator complex subunit 2##AL136800|INTS2|57508|integrator complex subunit 2##NM_020748|INTS2|57508|integrator complex subunit 2##BC101472|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##BC101474|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##AF360549|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##NM_032043|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##NM_001144933|EFCAB3|146779|EF-hand calcium binding domain 3##AK098684|EFCAB3|146779|EF-hand calcium binding domain 3##NM_173503|EFCAB3|146779|EF-hand calcium binding domain 3##BC101752|EFCAB3|146779|EF-hand calcium binding domain 3##BC101778|EFCAB3|146779|EF-hand calcium binding domain 3##NM_181725|METTL2A|339175|methyltransferase like 2A##BC006985|METTL2A|339175|methyltransferase like 2A##AF161384|METTL2A|339175|methyltransferase like 2A##AK022822|METTL2A|339175|methyltransferase like 2A##AF161385|METTL2A|339175|methyltransferase like 2A	0.441342	denovo_WM_21:11:0.441
chr11	118663487	118663639	reg1000791.p1	4.833	+	TSC_hg19_v1_chr11_-_118661898 NM_004397	-1629	-	TSC_hg19_v1_chr11_-_118661865 Z11685	-1684	-	TSC_hg19_v1_chr11_-_118661860 BC026228	-1704	-	AK291512 NM_001716 BC110352 X68149 AB464488	90997	+	NM_032966 X68829	100537	+	AB094091 NM_182557	118049	-	NM_004397|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##Z11685|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##BC026228|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##AK291512|CXCR5|643|chemokine (C-X-C motif) receptor 5##NM_001716|CXCR5|643|chemokine (C-X-C motif) receptor 5##BC110352|CXCR5|643|chemokine (C-X-C motif) receptor 5##X68149|CXCR5|643|chemokine (C-X-C motif) receptor 5##NM_032966|CXCR5|643|chemokine (C-X-C motif) receptor 5##X68829|CXCR5|643|chemokine (C-X-C motif) receptor 5##AB094091|BCL9L|283149|B-cell CLL/lymphoma 9-like##NM_182557|BCL9L|283149|B-cell CLL/lymphoma 9-like	0.987822	denovo_WM_21:50:0.988
chr17	61228635	61228707	reg1001860.p2	4.824	+	NM_025185	-141774	+	AK122947 AK093076 AX747906 BX648705 NM_152598	-342994	-	NM_001100875 BC035021	-344660	-	BC144357 TSC_hg19_v1_chr17_+_61271368	42690	+	BC091485 NM_001017917	289519	-	AK095244 NM_001017916 TSC_hg19_v1_chr17_-_61523715 AK301541 AK294403 BC002976 AK303177 AK316606 NM_001915	294965	-	NM_025185|TANC2|26115|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2##AK122947|MARCH10|162333|membrane-associated ring finger (C3HC4) 10##AK093076|MARCH10|162333|membrane-associated ring finger (C3HC4) 10##BX648705|MARCH10|162333|membrane-associated ring finger (C3HC4) 10##NM_152598|MARCH10|162333|membrane-associated ring finger (C3HC4) 10##NM_001100875|MARCH10|162333|membrane-associated ring finger (C3HC4) 10##BC035021|MARCH10|162333|membrane-associated ring finger (C3HC4) 10##BC144357|TANC2|26115|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2##BC091485|CYB561|1534|cytochrome b-561##NM_001017917|CYB561|1534|cytochrome b-561##AK095244|CYB561|1534|cytochrome b-561##NM_001017916|CYB561|1534|cytochrome b-561##AK301541|CYB561|1534|cytochrome b-561##AK294403|CYB561|1534|cytochrome b-561##BC002976|CYB561|1534|cytochrome b-561##AK303177|CYB561|1534|cytochrome b-561##AK316606|CYB561|1534|cytochrome b-561##NM_001915|CYB561|1534|cytochrome b-561	0.0	
chrX	151999297	151999448	reg1000729.p1	4.824	+	TSC_hg19_v1_chrX_-_151999272 AK311940 BC013873 BC005334 NM_004344 X72964	-91	-	BC017389 BC016803 BC000340 AK292384 BC005963 NM_005362	-61156	-	AF080246 AF136715 NM_001080848 NM_001129828 NM_004909 BC119735 BC119734 NM_001129826	-71601	+	NM_001129765 NM_015922 U47105 BC007816 TSC_hg19_v1_chrX_+_151999551	162	+	TSC_hg19_v1_chrX_+_151999576 BC000245	205	+	TSC_hg19_v1_chrX_+_151999606 AK026549	240	+	AK311940|CETN2|1069|centrin, EF-hand protein, 2##BC013873|CETN2|1069|centrin, EF-hand protein, 2##BC005334|CETN2|1069|centrin, EF-hand protein, 2##NM_004344|CETN2|1069|centrin, EF-hand protein, 2##X72964|CETN2|1069|centrin, EF-hand protein, 2##BC017389|MAGEA3|4102|melanoma antigen family A, 3##BC016803|MAGEA3|4102|melanoma antigen family A, 3##BC000340|MAGEA3|4102|melanoma antigen family A, 3##AK292384|MAGEA3|4102|melanoma antigen family A, 3##BC005963|MAGEA3|4102|melanoma antigen family A, 3##NM_005362|MAGEA3|4102|melanoma antigen family A, 3##AF080246|CSAG3|389903|CSAG family, member 3##AF136715|CSAG3|389903|CSAG family, member 3##NM_001080848|CSAG2|728461|CSAG family, member 2##NM_001129828|CSAG3|389903|CSAG family, member 3##NM_004909|CSAG2|728461|CSAG family, member 2##BC119735|CSAG3|389903|CSAG family, member 3##BC119734|CSAG3|389903|CSAG family, member 3##NM_001129826|CSAG3|389903|CSAG family, member 3##NM_001129765|NSDHL|50814|NAD(P) dependent steroid dehydrogenase-like##NM_015922|NSDHL|50814|NAD(P) dependent steroid dehydrogenase-like##U47105|NSDHL|50814|NAD(P) dependent steroid dehydrogenase-like##BC007816|NSDHL|50814|NAD(P) dependent steroid dehydrogenase-like##BC000245|NSDHL|50814|NAD(P) dependent steroid dehydrogenase-like##AK026549|NSDHL|50814|NAD(P) dependent steroid dehydrogenase-like	0.683772	denovo_WM_21:-23:0.641
chr10	73137361	73137439	reg1001088.p2	4.823	+	BC063019 TSC_hg19_v1_chr10_+_73079044 AY288928	-58354	+	AX775915 AX775917 AX775919 AX775921 NM_001174098 NM_018344 TSC_hg19_v1_chr10_+_73079015 AK316152 AY358686 BC120996 BC120997 AK304503 BC050589 AK314497	-58375	+	TSC_hg19_v1_chr10_+_72972326 AK128132 NM_001244889 NM_170744 AY358351 AB096256	-165020	+	TSC_hg19_v1_chr10_+_73156683 BC011570 NM_001171930 NM_001171931 NM_001171932 NM_022124 NM_052836 BC032581 BC139903 BC108254 BC065284 BC136976 BC136977	19338	+	AK123442 BC071608 NM_001164375 TSC_hg19_v1_chr10_-_73479685	342192	-	AK074172 NM_001168390	360180	-	BC063019|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AY288928|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AX775915|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AX775917|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AX775919|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AX775921|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##NM_001174098|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##NM_018344|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AK316152|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AY358686|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##BC120996|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##BC120997|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AK304503|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##BC050589|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AK314497|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AK128132|UNC5B|219699|unc-5 homolog B (C. elegans)##NM_001244889|UNC5B|219699|unc-5 homolog B (C. elegans)##NM_170744|UNC5B|219699|unc-5 homolog B (C. elegans)##AY358351|UNC5B|219699|unc-5 homolog B (C. elegans)##AB096256|UNC5B|219699|unc-5 homolog B (C. elegans)##BC011570|CDH23|64072|cadherin-related 23##NM_001171930|CDH23|64072|cadherin-related 23##NM_001171931|CDH23|64072|cadherin-related 23##NM_001171932|CDH23|64072|cadherin-related 23##NM_022124|CDH23|64072|cadherin-related 23##NM_052836|CDH23|64072|cadherin-related 23##BC032581|CDH23|64072|cadherin-related 23##BC139903|CDH23|64072|cadherin-related 23##BC108254|CDH23|64072|cadherin-related 23##BC065284|CDH23|64072|cadherin-related 23##BC136976|CDH23|64072|cadherin-related 23##BC136977|CDH23|64072|cadherin-related 23##AK123442|C10orf105|414152|chromosome 10 open reading frame 105##BC071608|C10orf105|414152|chromosome 10 open reading frame 105##NM_001164375|C10orf105|414152|chromosome 10 open reading frame 105##AK074172|C10orf105|414152|chromosome 10 open reading frame 105##NM_001168390|C10orf105|414152|chromosome 10 open reading frame 105	0.024649	
chr9	104295757	104295868	reg1000966.p1	4.823	+	TSC_hg19_v1_chr9_-_104249468 AK313981 BC006115 NM_032342	-46365	-	X01098 TSC_hg19_v1_chr9_-_104198057 AK026411 AK290795 BC029399 NM_000035 X02747	-97738	-	TSC_hg19_v1_chr9_+_104161232 AK290163 AK313655 AK308935 NM_003452 NM_197977 BC065718 BC092425 AF025770 U75454 U95992 BC126120 BC143876 BC143877	-134568	+	TSC_hg19_v1_chr9_+_104296134 AF265230 NM_019592 AK022532 BC110584 BC110585 BC152309	318	+	TSC_hg19_v1_chr9_+_104296143 BC016691 BC063115	335	+	TSC_hg19_v1_chr9_+_104296175 AK314401	358	+	AK313981|C9orf125|84302|chromosome 9 open reading frame 125##BC006115|C9orf125|84302|chromosome 9 open reading frame 125##NM_032342|C9orf125|84302|chromosome 9 open reading frame 125##X01098|ALDOB|229|aldolase B, fructose-bisphosphate##AK026411|ALDOB|229|aldolase B, fructose-bisphosphate##AK290795|ALDOB|229|aldolase B, fructose-bisphosphate##BC029399|ALDOB|229|aldolase B, fructose-bisphosphate##NM_000035|ALDOB|229|aldolase B, fructose-bisphosphate##X02747|ALDOB|229|aldolase B, fructose-bisphosphate##AK290163|ZNF189|7743|zinc finger protein 189##AK313655|ZNF189|7743|zinc finger protein 189##AK308935|ZNF189|7743|zinc finger protein 189##NM_003452|ZNF189|7743|zinc finger protein 189##NM_197977|ZNF189|7743|zinc finger protein 189##BC065718|ZNF189|7743|zinc finger protein 189##BC092425|ZNF189|7743|zinc finger protein 189##AF025770|ZNF189|7743|zinc finger protein 189##U75454|ZNF189|7743|zinc finger protein 189##U95992|ZNF189|7743|zinc finger protein 189##BC126120|ZNF189|7743|zinc finger protein 189##BC143876|ZNF189|7743|zinc finger protein 189##BC143877|ZNF189|7743|zinc finger protein 189##AF265230|RNF20|56254|ring finger protein 20##NM_019592|RNF20|56254|ring finger protein 20##AK022532|RNF20|56254|ring finger protein 20##BC110584|RNF20|56254|ring finger protein 20##BC110585|RNF20|56254|ring finger protein 20##BC152309|RNF20|56254|ring finger protein 20##BC016691|RNF20|56254|ring finger protein 20##BC063115|RNF20|56254|ring finger protein 20##AK314401|RNF20|56254|ring finger protein 20	0.043604	
chr21	35347828	35347917	reg1001309.p1	4.810	+	DQ656021 DQ656022 BT019836 CR456822 BC021233 AK124187 TSC_hg19_v1_chr21_-_35288097 AK222962 AK311796 BC022865 X83218 AK222608 NM_001697	-59780	-	TSC_hg19_v1_chr21_+_35190587 AY340592 AY340593 AF180522 AY138139	-157202	+	TSC_hg19_v1_chr21_+_35014896 AK027846 BC058925 AF114487 AF114488 NM_001001132 NM_003024 AK075290 BC046162 BC039036 BC117560 AK300274 BC073744 AK074554 BC020269 BC013578 AF064243 AF064244 DQ679754 DQ679755 DQ679756 DQ679757 EU107386 EU120735 EU120736 EU140799 EU191901 BC116185 BC116186	-333017	+	TSC_hg19_v1_chr21_+_35445875 AY061855 NM_032476 AX750578 NM_006933	97969	+	AB049942 AK312084 TSC_hg19_v1_chr21_+_35445877 BC004976 BC010076 BC000547 BC051302	98057	+	AF302095 DQ192290 NM_172201 BC112087 BC093892	388474	+	BT019836|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##CR456822|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC021233|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK124187|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222962|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK311796|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC022865|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##X83218|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222608|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##NM_001697|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AY340592|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY340593|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF180522|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY138139|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK027846|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC058925|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114487|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114488|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_001001132|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_003024|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK075290|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC039036|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC117560|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK300274|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC073744|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK074554|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC020269|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC013578|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064243|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064244|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679754|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679755|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679756|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679757|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU107386|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120735|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120736|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU140799|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU191901|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116185|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116186|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY061855|MRPS6|64968|mitochondrial ribosomal protein S6##NM_032476|MRPS6|64968|mitochondrial ribosomal protein S6##AX750578|SLC5A3|6526|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3##NM_006933|SLC5A3|6526|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3##AB049942|MRPS6|64968|mitochondrial ribosomal protein S6##AK312084|MRPS6|64968|mitochondrial ribosomal protein S6##BC004976|MRPS6|64968|mitochondrial ribosomal protein S6##BC010076|MRPS6|64968|mitochondrial ribosomal protein S6##BC000547|MRPS6|64968|mitochondrial ribosomal protein S6##BC051302|MRPS6|64968|mitochondrial ribosomal protein S6##AF302095|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##DQ192290|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##NM_172201|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##BC112087|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##BC093892|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2	0.0	
chr16	75182214	75182324	reg1001265.p2	4.809	+	AY092767 BC047902 NM_153486 NM_194436 TSC_hg19_v1_chr16_-_75150679	-31590	-	CU690528 TSC_hg19_v1_chr16_-_75150650 BC040279	-31632	-	TSC_hg19_v1_chr16_+_75033257 AK294434 BC007235 AF378524 AL136903	-149009	+	AK296560 TSC_hg19_v1_chr16_+_75182389 AK291372 NM_153688 AK094761 AK308134 BC064604	165	+	TSC_hg19_v1_chr16_-_75241062 AK124403 AK291822 AK225933 NM_001025200	58813	-	TSC_hg19_v1_chr16_+_75252885 NM_001906	70617	+	AY092767|LDHD|197257|lactate dehydrogenase D##BC047902|LDHD|197257|lactate dehydrogenase D##NM_153486|LDHD|197257|lactate dehydrogenase D##NM_194436|LDHD|197257|lactate dehydrogenase D##BC040279|LDHD|197257|lactate dehydrogenase D##AK294434|ZNRF1|84937|zinc and ring finger 1##BC007235|ZNRF1|84937|zinc and ring finger 1##AF378524|ZNRF1|84937|zinc and ring finger 1##AL136903|ZNRF1|84937|zinc and ring finger 1##AK296560|ZFP1|162239|zinc finger protein 1 homolog (mouse)##AK291372|ZFP1|162239|zinc finger protein 1 homolog (mouse)##NM_153688|ZFP1|162239|zinc finger protein 1 homolog (mouse)##AK094761|ZFP1|162239|zinc finger protein 1 homolog (mouse)##AK308134|ZFP1|162239|zinc finger protein 1 homolog (mouse)##BC064604|ZFP1|162239|zinc finger protein 1 homolog (mouse)##AK124403|CTRB1|1504|chymotrypsinogen B1##AK291822|CTRB2|440387|chymotrypsinogen B2##AK225933|CTRB2|440387|chymotrypsinogen B2##NM_001025200|CTRB2|440387|chymotrypsinogen B2##NM_001906|CTRB1|1504|chymotrypsinogen B1	0.0	
chr15	43982237	43982349	reg1001203.p1	4.807	+	BC028728 NM_054020 NM_172095 NM_172097 AK122607 BC064387 BX648099 TSC_hg19_v1_chr15_-_43941088	-41231	-	AK308370 BC129931 NM_153700	-71315	-	NM_020990 AK311698 AK316124	-97021	+	NM_001015001 AK311698 AK316124	2811	+	TSC_hg19_v1_chr15_+_44038635 NM_005313 AK075481 AK293249 BC036000 Z49835 BC071878 BC014433	56272	+	TSC_hg19_v1_chr15_+_44038656 AK075455	56360	+	BC028728|CATSPER2|117155|cation channel, sperm associated 2##NM_054020|CATSPER2|117155|cation channel, sperm associated 2##NM_172095|CATSPER2|117155|cation channel, sperm associated 2##NM_172097|CATSPER2|117155|cation channel, sperm associated 2##AK122607|CATSPER2|117155|cation channel, sperm associated 2##BC064387|CATSPER2|117155|cation channel, sperm associated 2##BX648099|CATSPER2|117155|cation channel, sperm associated 2##AK308370|STRC|161497|stereocilin##BC129931|STRC|161497|stereocilin##NM_153700|STRC|161497|stereocilin##NM_020990|CKMT1B|1159|creatine kinase, mitochondrial 1B##AK316124|CKMT1A|548596|creatine kinase, mitochondrial 1A##NM_001015001|CKMT1A|548596|creatine kinase, mitochondrial 1A##AK316124|CKMT1A|548596|creatine kinase, mitochondrial 1A##NM_005313|PDIA3|2923|protein disulfide isomerase family A, member 3##AK075481|PDIA3|2923|protein disulfide isomerase family A, member 3##AK293249|PDIA3|2923|protein disulfide isomerase family A, member 3##BC036000|PDIA3|2923|protein disulfide isomerase family A, member 3##Z49835|PDIA3|2923|protein disulfide isomerase family A, member 3##BC071878|PDIA3|2923|protein disulfide isomerase family A, member 3##BC014433|PDIA3|2923|protein disulfide isomerase family A, member 3##AK075455|PDIA3|2923|protein disulfide isomerase family A, member 3	0.325659	denovo_WM_21:-1:0.274
chr20	54967317	54967414	reg1001054.p1	4.806	+	BC002499 TSC_hg19_v1_chr20_-_54967272 BC006423 AF011468 BC001280 D84212 AK312776 BC027464 AK301769 NM_003600 NM_198433 NM_198434 NM_198435 NM_198436 NM_198437	-80	-	NM_080821 TSC_hg19_v1_chr20_+_54934029 AK314768 AJ311123 BC017725 AK075565	-33341	+	BC069105 NM_019888 AB529241 AY227893 BC069591 BC069599 BC096702 BC096737 BC098169 BC098351 CU686926	-143578	+	TSC_hg19_v1_chr20_+_54967443 NM_001033521 AK307144	59	+	TSC_hg19_v1_chr20_+_54967593 NM_001324 L02547	232	+	TSC_hg19_v1_chr20_+_54967709 AK293182 AK312774 NM_001033522 BC001011 BC007425	352	+	BC002499|AURKA|6790|aurora kinase A##BC006423|AURKA|6790|aurora kinase A##AF011468|AURKA|6790|aurora kinase A##BC001280|AURKA|6790|aurora kinase A##D84212|AURKA|6790|aurora kinase A##AK312776|AURKA|6790|aurora kinase A##BC027464|AURKA|6790|aurora kinase A##AK301769|AURKA|6790|aurora kinase A##NM_003600|AURKA|6790|aurora kinase A##NM_198433|AURKA|6790|aurora kinase A##NM_198434|AURKA|6790|aurora kinase A##NM_198435|AURKA|6790|aurora kinase A##NM_198436|AURKA|6790|aurora kinase A##NM_198437|AURKA|6790|aurora kinase A##NM_080821|FAM210B|116151|family with sequence similarity 210, member B##AK314768|FAM210B|116151|family with sequence similarity 210, member B##AJ311123|FAM210B|116151|family with sequence similarity 210, member B##BC017725|FAM210B|116151|family with sequence similarity 210, member B##AK075565|FAM210B|116151|family with sequence similarity 210, member B##BC069105|MC3R|4159|melanocortin 3 receptor##NM_019888|MC3R|4159|melanocortin 3 receptor##AY227893|MC3R|4159|melanocortin 3 receptor##BC069591|MC3R|4159|melanocortin 3 receptor##BC069599|MC3R|4159|melanocortin 3 receptor##BC096702|MC3R|4159|melanocortin 3 receptor##BC096737|MC3R|4159|melanocortin 3 receptor##BC098169|MC3R|4159|melanocortin 3 receptor##BC098351|MC3R|4159|melanocortin 3 receptor##NM_001033521|CSTF1|1477|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa##NM_001324|CSTF1|1477|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa##L02547|CSTF1|1477|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa##AK293182|CSTF1|1477|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa##AK312774|CSTF1|1477|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa##NM_001033522|CSTF1|1477|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa##BC001011|CSTF1|1477|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa##BC007425|CSTF1|1477|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa	1.239399	denovo_WM_21:-11:0.915	denovo_WM_21:-43:0.324
chr6	82957471	82957596	reg1001202.p2	4.803	+	TSC_hg19_v1_chr6_-_82957441 NM_015525 DQ005633 DQ005634	-65	-	BC112929 TSC_hg19_v1_chr6_-_82957431 BC012551	-120	-	TSC_hg19_v1_chr6_-_82462399 AJ420592 BC000683 AK000044 BX648876 AF350451 BC007351 AK056057 AK292109 NM_017633	-495122	-	AK291170 NM_006670	115389	+	TSC_hg19_v1_chr6_+_83073565 BC037161 AK074786	116000	+	TSC_hg19_v1_chr6_+_83073996 AK074790 NM_001166392	116444	+	NM_015525|IBTK|25998|inhibitor of Bruton agammaglobulinemia tyrosine kinase##DQ005633|IBTK|25998|inhibitor of Bruton agammaglobulinemia tyrosine kinase##DQ005634|IBTK|25998|inhibitor of Bruton agammaglobulinemia tyrosine kinase##BC112929|IBTK|25998|inhibitor of Bruton agammaglobulinemia tyrosine kinase##BC012551|IBTK|25998|inhibitor of Bruton agammaglobulinemia tyrosine kinase##AJ420592|FAM46A|55603|family with sequence similarity 46, member A##BC000683|FAM46A|55603|family with sequence similarity 46, member A##AK000044|FAM46A|55603|family with sequence similarity 46, member A##BX648876|FAM46A|55603|family with sequence similarity 46, member A##AF350451|FAM46A|55603|family with sequence similarity 46, member A##BC007351|FAM46A|55603|family with sequence similarity 46, member A##AK056057|FAM46A|55603|family with sequence similarity 46, member A##AK292109|FAM46A|55603|family with sequence similarity 46, member A##NM_017633|FAM46A|55603|family with sequence similarity 46, member A##AK291170|TPBG|7162|trophoblast glycoprotein##NM_006670|TPBG|7162|trophoblast glycoprotein##BC037161|TPBG|7162|trophoblast glycoprotein##AK074786|TPBG|7162|trophoblast glycoprotein##AK074790|TPBG|7162|trophoblast glycoprotein##NM_001166392|TPBG|7162|trophoblast glycoprotein	0.526015	denovo_WM_21:9:0.305	denovo_WM_21:-21:0.221
chr3	113775515	113775615	reg1001200.p2	4.802	+	AK125304 AK295855 AK302488 BC150592 AF509494 NM_020817	-154	-	TSC_hg19_v1_chr3_+_113666756 BC035230 NM_173570 AK127996 AK127025	-108838	+	AK304142 NM_001172105 AY358725 AK292964	-159206	+	TSC_hg19_v1_chr3_+_113775628 AK299313 BC039265 NM_024638 AL833709 AK296938	41	+	TSC_hg19_v1_chr3_+_113775661 AK023022	109	+	AY228457 AY228458 NM_000796 NM_033663 AY228454	122351	-	AK125304|KIAA1407|57577|KIAA1407##AK295855|KIAA1407|57577|KIAA1407##AK302488|KIAA1407|57577|KIAA1407##BC150592|KIAA1407|57577|KIAA1407##AF509494|KIAA1407|57577|KIAA1407##NM_020817|KIAA1407|57577|KIAA1407##BC035230|ZDHHC23|254887|zinc finger, DHHC-type containing 23##NM_173570|ZDHHC23|254887|zinc finger, DHHC-type containing 23##AK127996|ZDHHC23|254887|zinc finger, DHHC-type containing 23##AK127025|ZDHHC23|254887|zinc finger, DHHC-type containing 23##AK304142|GRAMD1C|54762|GRAM domain containing 1C##NM_001172105|GRAMD1C|54762|GRAM domain containing 1C##AY358725|GRAMD1C|54762|GRAM domain containing 1C##AK292964|GRAMD1C|54762|GRAM domain containing 1C##AK299313|QTRTD1|79691|queuine tRNA-ribosyltransferase domain containing 1##BC039265|QTRTD1|79691|queuine tRNA-ribosyltransferase domain containing 1##NM_024638|QTRTD1|79691|queuine tRNA-ribosyltransferase domain containing 1##AL833709|QTRTD1|79691|queuine tRNA-ribosyltransferase domain containing 1##AK296938|QTRTD1|79691|queuine tRNA-ribosyltransferase domain containing 1##AK023022|QTRTD1|79691|queuine tRNA-ribosyltransferase domain containing 1##AY228457|DRD3|1814|dopamine receptor D3##AY228458|DRD3|1814|dopamine receptor D3##NM_000796|DRD3|1814|dopamine receptor D3##NM_033663|DRD3|1814|dopamine receptor D3##AY228454|DRD3|1814|dopamine receptor D3	0.962801	denovo_WM_21:30:0.951
chr11	3818965	3819150	reg1000536.p2	4.801	+	TSC_hg19_v1_chr11_-_3819023 NM_005387 NM_016320 NM_139131 NM_139132	-56	-	TSC_hg19_v1_chr11_-_3818785 AF231130 U41815 AK292882 BC041136 AB038155 AB040538 AK301512	-297	-	TSC_hg19_v1_chr11_-_3818730 AF071076 AF071077	-338	-	AL096753 NM_001145438 TSC_hg19_v1_chr11_+_3819145 AK307359 AK308525 AK292181 BC009930 AK301991	28	+	NM_014489 AF159615	10717	+	BC104177 BC104178 TSC_hg19_v1_chr11_-_3862161	43098	-	NM_005387|NUP98|4928|nucleoporin 98kDa##NM_016320|NUP98|4928|nucleoporin 98kDa##NM_139131|NUP98|4928|nucleoporin 98kDa##NM_139132|NUP98|4928|nucleoporin 98kDa##AF231130|NUP98|4928|nucleoporin 98kDa##U41815|NUP98|4928|nucleoporin 98kDa##AK292882|NUP98|4928|nucleoporin 98kDa##BC041136|NUP98|4928|nucleoporin 98kDa##AB040538|NUP98|4928|nucleoporin 98kDa##AK301512|NUP98|4928|nucleoporin 98kDa##AF071076|NUP98|4928|nucleoporin 98kDa##AF071077|NUP98|4928|nucleoporin 98kDa##AL096753|PGAP2|27315|post-GPI attachment to proteins 2##NM_001145438|PGAP2|27315|post-GPI attachment to proteins 2##AK307359|PGAP2|27315|post-GPI attachment to proteins 2##AK292181|PGAP2|27315|post-GPI attachment to proteins 2##BC009930|PGAP2|27315|post-GPI attachment to proteins 2##AK301991|PGAP2|27315|post-GPI attachment to proteins 2##NM_014489|PGAP2|27315|post-GPI attachment to proteins 2##AF159615|PGAP2|27315|post-GPI attachment to proteins 2##BC104177|RHOG|391|ras homolog gene family, member G (rho G)##BC104178|RHOG|391|ras homolog gene family, member G (rho G)	0.032993	
chr4	78077912	78078008	reg1000886.p1	4.800	+	TSC_hg19_v1_chr4_-_77997145 BC000420 BC004975 NM_006835 AB209766 AK301111 AK312632	-80808	-	AK124592 CR627457 TSC_hg19_v1_chr4_+_77954068	-123955	+	TSC_hg19_v1_chr4_+_77871005 AK001711 AL110300 AK302700 BC063615 GU727629 AB587498	-206960	+	TSC_hg19_v1_chr4_+_78078359 NM_004354 AK292029 BC032518	401	+	TSC_hg19_v1_chr4_+_78078398 U47414	500	+	TSC_hg19_v1_chr4_+_78079302 L49506 AK293899 AB529093 BT019503 CR542181 CR542200 CU689406 DQ890836 DQ893991	1533	+	BC000420|CCNI|10983|cyclin I##BC004975|CCNI|10983|cyclin I##NM_006835|CCNI|10983|cyclin I##AB209766|CCNI|10983|cyclin I##AK301111|CCNI|10983|cyclin I##AK312632|CCNI|10983|cyclin I##AK124592|SEPT11|55752|septin 11##AK001711|SEPT11|55752|septin 11##AL110300|SEPT11|55752|septin 11##AK302700|SEPT11|55752|septin 11##BC063615|SEPT11|55752|septin 11##GU727629|SEPT11|55752|septin 11##NM_004354|CCNG2|901|cyclin G2##AK292029|CCNG2|901|cyclin G2##BC032518|CCNG2|901|cyclin G2##U47414|CCNG2|901|cyclin G2##L49506|CCNG2|901|cyclin G2##AK293899|CCNG2|901|cyclin G2##BT019503|CCNG2|901|cyclin G2##CR542181|CCNG2|901|cyclin G2##CR542200|CCNG2|901|cyclin G2##DQ890836|CCNG2|901|cyclin G2##DQ893991|CCNG2|901|cyclin G2	2.023139	denovo_WM_21:-34:0.994	denovo_WM_21:54:0.979
chr1	220263273	220263414	reg1000881.p2	4.797	+	AJ249339 TSC_hg19_v1_chr1_-_220263167 AK315962 NM_006085	-169	-	TSC_hg19_v1_chr1_-_220263112 AF125042 AK291943 BC017801 AK298476 AK300777	-222	-	TSC_hg19_v1_chr1_-_220219923 BC046156 NM_004446	-43407	-	TSC_hg19_v1_chr1_+_220267461 AY267462 NM_018060 BC137438	4109	+	TSC_hg19_v1_chr1_+_220267495 AY952883 D28500 AK291432 BC040376	4263	+	AB020646 BC146760 TSC_hg19_v1_chr1_-_220445745 BC050630 AF004828 BC131573	182369	-	AJ249339|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK315962|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##NM_006085|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AF125042|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK291943|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##BC017801|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK298476|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK300777|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##BC046156|EPRS|2058|glutamyl-prolyl-tRNA synthetase##NM_004446|EPRS|2058|glutamyl-prolyl-tRNA synthetase##AY267462|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##NM_018060|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##BC137438|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##AY952883|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##D28500|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##AK291432|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##BC040376|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##AB020646|RAB3GAP2|25782|RAB3 GTPase activating protein subunit 2 (non-catalytic)##BC146760|RAB3GAP2|25782|RAB3 GTPase activating protein subunit 2 (non-catalytic)##BC050630|AURKAPS1|6791|aurora kinase A pseudogene 1##AF004828|RAB3GAP2|25782|RAB3 GTPase activating protein subunit 2 (non-catalytic)##BC131573|RAB3GAP2|25782|RAB3 GTPase activating protein subunit 2 (non-catalytic)	0.0	
chr19	1507830	1507914	reg1000805.p1	4.797	+	TSC_hg19_v1_chr19_+_1491191 AX775999 BC008201 NM_138393 AK058112 AK315744 AK293919 CU678889 AY562244	-16738	+	AK302079 AY358963 NM_017573 BC142942 TSC_hg19_v1_chr19_-_1490440	-17450	-	AK057235 TSC_hg19_v1_chr19_-_1490352	-17526	-	TSC_hg19_v1_chr19_-_1513019 AK302020 AK131571	5142	-	BC040620 NM_213604	5315	-	AK054808 NM_001243079	16200	+	AX775999|REEP6|92840|receptor accessory protein 6##BC008201|REEP6|92840|receptor accessory protein 6##NM_138393|REEP6|92840|receptor accessory protein 6##AK058112|REEP6|92840|receptor accessory protein 6##AK315744|REEP6|92840|receptor accessory protein 6##AK293919|REEP6|92840|receptor accessory protein 6##AY562244|REEP6|92840|receptor accessory protein 6##AK302079|PCSK4|54760|proprotein convertase subtilisin/kexin type 4##AY358963|PCSK4|54760|proprotein convertase subtilisin/kexin type 4##NM_017573|PCSK4|54760|proprotein convertase subtilisin/kexin type 4##BC142942|PCSK4|54760|proprotein convertase subtilisin/kexin type 4##AK057235|PCSK4|54760|proprotein convertase subtilisin/kexin type 4##AK302020|ADAMTSL5|339366|ADAMTS-like 5##AK131571|ADAMTSL5|339366|ADAMTS-like 5##BC040620|ADAMTSL5|339366|ADAMTS-like 5##NM_213604|ADAMTSL5|339366|ADAMTS-like 5##AK054808|PLK5|126520|polo-like kinase 5##NM_001243079|PLK5|126520|polo-like kinase 5	1.866117	denovo_WM_21:-1:0.943	denovo_WM_21:40:0.923
chr20	49116041	49116154	reg1001207.p1	4.795	+	TSC_hg19_v1_chr20_+_48807463 AB464474 EU832661 EU832739	-308467	+	TSC_hg19_v1_chr20_+_48807366 AK291536 BC021931 AF289608 BC007538	-308716	+	NM_005194 TSC_hg19_v1_chr20_+_48807197	-308904	+	TSC_hg19_v1_chr20_+_49126895 AK290638 NM_002827	10779	+	TSC_hg19_v1_chr20_+_49126916 AK316563	10816	+	AK299830 TSC_hg19_v1_chr20_+_49126919	10822	+	EU832661|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##EU832739|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##AK291536|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##BC021931|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##AF289608|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##BC007538|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##NM_005194|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##AK290638|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##NM_002827|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK316563|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK299830|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1	0.038329	
chr7	62333369	62333481	reg1001170.p1	4.793	+	AK131575 NM_001159279	-4823543	+	AF277624 NM_033273	-5125855	-	Y10275 TSC_hg19_v1_chr7_-_56184079 BC043523 NM_001145712	-6149382	-	NM_001159522	1172395	+	NM_001159524	1334155	+	BC033523 NM_153363	1355426	+	AK131575|ZNF716|441234|zinc finger protein 716##NM_001159279|ZNF716|441234|zinc finger protein 716##AF277624|ZNF479|90827|zinc finger protein 479##NM_033273|ZNF479|90827|zinc finger protein 479##BC043523|LOC389493|389493|uncharacterized protein LOC389493##NM_001145712|LOC389493|389493|uncharacterized protein LOC389493##NM_001159522|ZNF727|442319|zinc finger protein 727##NM_001159524|ZNF735|730291|zinc finger protein 735##BC033523|ZNF679|168417|zinc finger protein 679##NM_153363|ZNF679|168417|zinc finger protein 679	0.105979	
chr14	23790243	23790428	reg1000138.p1	4.792	+	NM_004643	-939	+	NM_001199864 NM_004050 AK289519 TSC_hg19_v1_chr14_+_23776072 BC104789 BC113522 D87461 BC011637 NM_001199839	-14291	+	NM_020834 TSC_hg19_v1_chr14_-_23755308	-35010	-	TSC_hg19_v1_chr14_+_23790671 BX247976 BC010939	339	+	AB529096 DQ658848 BC020565 NM_020372	31115	-	TSC_hg19_v1_chr14_-_23822095 BX161416 NM_016609 BC030559	31740	-	NM_004643|PABPN1|8106|poly(A) binding protein, nuclear 1##NM_001199864|BCL2L2-PABPN1|100529063|BCL2L2-PABPN1 readthrough##NM_004050|BCL2L2|599|BCL2-like 2##AK289519|BCL2L2|599|BCL2-like 2##BC104789|BCL2L2|599|BCL2-like 2##BC113522|BCL2L2|599|BCL2-like 2##D87461|BCL2L2|599|BCL2-like 2##BC011637|BCL2L2-PABPN1|100529063|BCL2L2-PABPN1 readthrough##NM_001199839|BCL2L2|599|BCL2-like 2##NM_020834|HOMEZ|57594|homeobox and leucine zipper encoding##BX247976|PABPN1|8106|poly(A) binding protein, nuclear 1##BC010939|PABPN1|8106|poly(A) binding protein, nuclear 1##DQ658848|SLC22A17|51310|solute carrier family 22, member 17##BC020565|SLC22A17|51310|solute carrier family 22, member 17##NM_020372|SLC22A17|51310|solute carrier family 22, member 17##BX161416|SLC22A17|51310|solute carrier family 22, member 17##NM_016609|SLC22A17|51310|solute carrier family 22, member 17##BC030559|SLC22A17|51310|solute carrier family 22, member 17	1.455337	denovo_WM_21:23:0.546	denovo_WM_21:-51:0.910
chr19	12273771	12273908	reg1001001.p2	4.791	+	BC007868 AK096560 AK292455 NM_145233 TSC_hg19_v1_chr19_-_12267555	-6293	-	AL080125 AK023094 BC036714 TSC_hg19_v1_chr19_-_12251166 NM_001203250 NM_021143	-22683	-	AK128700 TSC_hg19_v1_chr19_+_12203111 AK124155	-70726	+	TSC_hg19_v1_chr19_+_12273910 NM_003437 AK291242 BC006421 AK299601 U09367	70	+	AK023304 TSC_hg19_v1_chr19_+_12305836	31994	+	TSC_hg19_v1_chr19_+_12305871 AK093188 AX721123	32067	+	BC007868|ZNF625|90589|zinc finger protein 625##AK096560|ZNF625-ZNF20|100529855|ZNF625-ZNF20 readthrough##AK292455|ZNF625-ZNF20|100529855|ZNF625-ZNF20 readthrough##NM_145233|ZNF625|90589|zinc finger protein 625##AL080125|ZNF20|7568|zinc finger protein 20##AK023094|ZNF20|7568|zinc finger protein 20##BC036714|ZNF20|7568|zinc finger protein 20##NM_001203250|ZNF20|7568|zinc finger protein 20##NM_021143|ZNF20|7568|zinc finger protein 20##AK128700|ZNF788|388507|zinc finger family member 788##NM_003437|ZNF136|7695|zinc finger protein 136##AK291242|ZNF136|7695|zinc finger protein 136##BC006421|ZNF136|7695|zinc finger protein 136##AK299601|ZNF136|7695|zinc finger protein 136##U09367|ZNF136|7695|zinc finger protein 136##AK023304|LOC100289333|100289333|uncharacterized LOC100289333	0.079846	
chr17	43138537	43138701	reg1000501.p1	4.789	+	TSC_hg19_v1_chr17_-_43138397 BC006472 BC006546 NM_024819	-207	-	TSC_hg19_v1_chr17_-_43128979 AK290755 NM_001128631 AK026608	-9690	-	TSC_hg19_v1_chr17_-_43045715 BC008798 NM_006688	-92921	-	TSC_hg19_v1_chr17_+_43138673 Y17208 Y17209	38	+	TSC_hg19_v1_chr17_+_43138687 BC006538 BC006569 NM_021079 AF043324 AK291936 AK303517 AB527516 BC008579 AF020500	73	+	AB075844 AL834392 AB384653 TSC_hg19_v1_chr17_-_43209885 BC072384 AK074240 NM_133373	71196	-	BC006472|DCAKD|79877|dephospho-CoA kinase domain containing##BC006546|DCAKD|79877|dephospho-CoA kinase domain containing##NM_024819|DCAKD|79877|dephospho-CoA kinase domain containing##AK290755|DCAKD|79877|dephospho-CoA kinase domain containing##NM_001128631|DCAKD|79877|dephospho-CoA kinase domain containing##AK026608|DCAKD|79877|dephospho-CoA kinase domain containing##BC008798|C1QL1|10882|complement component 1, q subcomponent-like 1##NM_006688|C1QL1|10882|complement component 1, q subcomponent-like 1##Y17208|NMT1|4836|N-myristoyltransferase 1##Y17209|NMT1|4836|N-myristoyltransferase 1##BC006538|NMT1|4836|N-myristoyltransferase 1##BC006569|NMT1|4836|N-myristoyltransferase 1##NM_021079|NMT1|4836|N-myristoyltransferase 1##AF043324|NMT1|4836|N-myristoyltransferase 1##AK291936|NMT1|4836|N-myristoyltransferase 1##AK303517|NMT1|4836|N-myristoyltransferase 1##BC008579|NMT1|4836|N-myristoyltransferase 1##AF020500|NMT1|4836|N-myristoyltransferase 1##AB075844|PLCD3|113026|phospholipase C, delta 3##AL834392|PLCD3|113026|phospholipase C, delta 3##BC072384|PLCD3|113026|phospholipase C, delta 3##AK074240|PLCD3|113026|phospholipase C, delta 3##NM_133373|PLCD3|113026|phospholipase C, delta 3	0.800142	denovo_WM_21:28:0.800
chr1	212965130	212965212	reg1001482.p1	4.787	+	AB528354 CU675531 DQ892899 DQ896149 AK222996 AF201941 TSC_hg19_v1_chr1_-_212965111 BC007067 AK223260 AK303250 BC036048 AF255793 AK313730 NM_001042549 NM_015471	-50	-	TSC_hg19_v1_chr1_-_212873317 AF255346 NM_018664	-91851	-	TSC_hg19_v1_chr1_-_212873221 BC117489 BC117491	-91941	-	AK293129 NM_001042552 NM_001042553 NM_001146169 NM_001146170 NM_001146171 AK304557 TSC_hg19_v1_chr1_+_212965255 BC113638 BC117485 BC143956 BC143957 AL832248 BC048115 HQ258161	47	+	AY640234 BC035742 NM_001024601	55797	-	TSC_hg19_v1_chr1_-_213031441 AY030238 AY030239 AK092887	66293	-	DQ892899|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##DQ896149|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK222996|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AF201941|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##BC007067|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK223260|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK303250|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##BC036048|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AF255793|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK313730|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_001042549|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_015471|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AF255346|BATF3|55509|basic leucine zipper transcription factor, ATF-like 3##NM_018664|BATF3|55509|basic leucine zipper transcription factor, ATF-like 3##BC117489|BATF3|55509|basic leucine zipper transcription factor, ATF-like 3##BC117491|BATF3|55509|basic leucine zipper transcription factor, ATF-like 3##AK293129|TATDN3|128387|TatD DNase domain containing 3##NM_001042552|TATDN3|128387|TatD DNase domain containing 3##NM_001042553|TATDN3|128387|TatD DNase domain containing 3##NM_001146169|TATDN3|128387|TatD DNase domain containing 3##NM_001146170|TATDN3|128387|TatD DNase domain containing 3##NM_001146171|TATDN3|128387|TatD DNase domain containing 3##AK304557|TATDN3|128387|TatD DNase domain containing 3##BC113638|TATDN3|128387|TatD DNase domain containing 3##BC117485|TATDN3|128387|TatD DNase domain containing 3##BC143956|TATDN3|128387|TatD DNase domain containing 3##BC143957|TATDN3|128387|TatD DNase domain containing 3##AL832248|TATDN3|128387|TatD DNase domain containing 3##BC048115|TATDN3|128387|TatD DNase domain containing 3##HQ258161|TATDN3|128387|TatD DNase domain containing 3##AY640234|C1orf227|149643|chromosome 1 open reading frame 227##BC035742|C1orf227|149643|chromosome 1 open reading frame 227##NM_001024601|C1orf227|149643|chromosome 1 open reading frame 227##AY030238|FLVCR1-AS1|642946|FLVCR1 antisense RNA 1 (non-protein coding)##AY030239|FLVCR1-AS1|642946|FLVCR1 antisense RNA 1 (non-protein coding)	0.0	
chr17	17184022	17184140	reg1001198.p1	4.786	+	AK302304 NM_001199125 AK316400	-31	-	TSC_hg19_v1_chr17_-_17140506 AK309336 AK127912 NM_144606 NM_144997	-43571	-	TSC_hg19_v1_chr17_-_17140464 AF517523 BC015687	-43636	-	AB529019 CU674916 AK297706 AF031647 TSC_hg19_v1_chr17_-_17184588 AF098109 AK312476	463	-	TSC_hg19_v1_chr17_-_17184612 BC001891 NM_003653	524	-	TSC_hg19_v1_chr17_+_17206686 AF210652 NM_020201 BC035838	22584	+	AK302304|COPS3|8533|COP9 constitutive photomorphogenic homolog subunit 3 (Arabidopsis)##NM_001199125|COPS3|8533|COP9 constitutive photomorphogenic homolog subunit 3 (Arabidopsis)##AK316400|COPS3|8533|COP9 constitutive photomorphogenic homolog subunit 3 (Arabidopsis)##AK309336|FLCN|201163|folliculin##AK127912|FLCN|201163|folliculin##NM_144606|FLCN|201163|folliculin##NM_144997|FLCN|201163|folliculin##AF517523|FLCN|201163|folliculin##BC015687|FLCN|201163|folliculin##AK297706|COPS3|8533|COP9 constitutive photomorphogenic homolog subunit 3 (Arabidopsis)##AF031647|COPS3|8533|COP9 constitutive photomorphogenic homolog subunit 3 (Arabidopsis)##AF098109|COPS3|8533|COP9 constitutive photomorphogenic homolog subunit 3 (Arabidopsis)##AK312476|COPS3|8533|COP9 constitutive photomorphogenic homolog subunit 3 (Arabidopsis)##BC001891|COPS3|8533|COP9 constitutive photomorphogenic homolog subunit 3 (Arabidopsis)##NM_003653|COPS3|8533|COP9 constitutive photomorphogenic homolog subunit 3 (Arabidopsis)##AF210652|NT5M|56953|5',3'-nucleotidase, mitochondrial##NM_020201|NT5M|56953|5',3'-nucleotidase, mitochondrial##BC035838|NT5M|56953|5',3'-nucleotidase, mitochondrial	0.130058	
chr8	47304209	47304309	reg1001099.p1	4.786	+	AY462869 AY462870 NM_001002920 NM_001005365 AB464430	-4156654	+	TSC_hg19_v1_chr8_+_42995654 BC042037	-4308612	+	TSC_hg19_v1_chr8_+_42995639 AK304441	-4308626	+	TSC_hg19_v1_chr8_+_48173495 NM_001080394	869236	+	TSC_hg19_v1_chr8_+_48173521 AK303579	869260	+	TSC_hg19_v1_chr8_+_48173532 AK294248 AK309842	869273	+	AY462869|POTEA|340441|POTE ankyrin domain family, member A##AY462870|POTEA|340441|POTE ankyrin domain family, member A##NM_001002920|POTEA|340441|POTE ankyrin domain family, member A##NM_001005365|POTEA|340441|POTE ankyrin domain family, member A##BC042037|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase##AK304441|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase##NM_001080394|KIAA0146|23514|KIAA0146##AK303579|KIAA0146|23514|KIAA0146##AK294248|KIAA0146|23514|KIAA0146##AK309842|KIAA0146|23514|KIAA0146	0.0	
chrX	47510042	47510196	reg1001128.p1	4.783	+	TSC_hg19_v1_chrX_-_47510001 NM_001114123 NM_005229	-111	-	BC048296 AB016193 TSC_hg19_v1_chrX_-_47509984 AK312984 AF000672 M25269	-192	-	NM_002621	-20416	-	TSC_hg19_v1_chrX_-_47518534 AF083242 AK223320	8392	-	TSC_hg19_v1_chrX_-_47518553 AF083241 AK312072 AF092737 NM_004182 NM_153477	8445	-	TSC_hg19_v1_chrX_+_47696313 AK126949 NM_007137	186178	+	NM_001114123|ELK1|2002|ELK1, member of ETS oncogene family##NM_005229|ELK1|2002|ELK1, member of ETS oncogene family##BC048296|ELK1|2002|ELK1, member of ETS oncogene family##AB016193|ELK1|2002|ELK1, member of ETS oncogene family##AK312984|ELK1|2002|ELK1, member of ETS oncogene family##AF000672|ELK1|2002|ELK1, member of ETS oncogene family##M25269|ELK1|2002|ELK1, member of ETS oncogene family##NM_002621|CFP|5199|complement factor properdin##AF083242|UXT|8409|ubiquitously-expressed, prefoldin-like chaperone##AK223320|UXT|8409|ubiquitously-expressed, prefoldin-like chaperone##AF083241|UXT|8409|ubiquitously-expressed, prefoldin-like chaperone##AK312072|UXT|8409|ubiquitously-expressed, prefoldin-like chaperone##AF092737|UXT|8409|ubiquitously-expressed, prefoldin-like chaperone##NM_004182|UXT|8409|ubiquitously-expressed, prefoldin-like chaperone##NM_153477|UXT|8409|ubiquitously-expressed, prefoldin-like chaperone##AK126949|ZNF81|347344|zinc finger protein 81##NM_007137|ZNF81|347344|zinc finger protein 81	1.904002	denovo_WM_21:79:0.922	denovo_WM_21:-83:0.934
chr1	201377320	201377459	reg1001050.p1	4.780	+	TSC_hg19_v1_chr1_-_201368726 BC071890	-8648	-	BX647307 U42408 TSC_hg19_v1_chr1_-_201368661 BC009742 NM_005558	-8744	-	DQ893656 DQ895808 TSC_hg19_v1_chr1_-_201368483 AK310917 AK313388	-8923	-	AJ315823 BC012601 TSC_hg19_v1_chr1_-_201390859 AK223588 J04760 AK311896 AL831820 AL831975 BC012600 BX510903 NM_003281	13470	-	BC014390 TSC_hg19_v1_chr1_-_201438317 AF151100 AK075179 AK222644 BC068273 NM_012396	60876	-	AK293053 NM_001193572	88311	-	BC071890|LAD1|3898|ladinin 1##BX647307|LAD1|3898|ladinin 1##U42408|LAD1|3898|ladinin 1##BC009742|LAD1|3898|ladinin 1##NM_005558|LAD1|3898|ladinin 1##DQ893656|LAD1|3898|ladinin 1##DQ895808|LAD1|3898|ladinin 1##AK310917|LAD1|3898|ladinin 1##AK313388|LAD1|3898|ladinin 1##AJ315823|TNNI1|7135|troponin I type 1 (skeletal, slow)##BC012601|TNNI1|7135|troponin I type 1 (skeletal, slow)##AK223588|TNNI1|7135|troponin I type 1 (skeletal, slow)##J04760|TNNI1|7135|troponin I type 1 (skeletal, slow)##AK311896|TNNI1|7135|troponin I type 1 (skeletal, slow)##AL831820|TNNI1|7135|troponin I type 1 (skeletal, slow)##AL831975|TNNI1|7135|troponin I type 1 (skeletal, slow)##BC012600|TNNI1|7135|troponin I type 1 (skeletal, slow)##BX510903|TNNI1|7135|troponin I type 1 (skeletal, slow)##NM_003281|TNNI1|7135|troponin I type 1 (skeletal, slow)##BC014390|PHLDA3|23612|pleckstrin homology-like domain, family A, member 3##AF151100|PHLDA3|23612|pleckstrin homology-like domain, family A, member 3##AK075179|PHLDA3|23612|pleckstrin homology-like domain, family A, member 3##AK222644|PHLDA3|23612|pleckstrin homology-like domain, family A, member 3##BC068273|PHLDA3|23612|pleckstrin homology-like domain, family A, member 3##NM_012396|PHLDA3|23612|pleckstrin homology-like domain, family A, member 3##AK293053|CSRP1|1465|cysteine and glycine-rich protein 1##NM_001193572|CSRP1|1465|cysteine and glycine-rich protein 1	0.0	
chr3	16288779	16288850	reg1001718.p1	4.779	+	AL831925 AK225673 AK312425 NM_054110 AY358443 AL832736 BC014789	-72620	+	AB002377 NM_015199 TSC_hg19_v1_chr3_-_15901096	-387802	-	TSC_hg19_v1_chr3_-_15839678 AK293770 NM_001195098	-449132	-	AK311618 BC010181 AK092040 TSC_hg19_v1_chr3_-_16306451 AK022970 NM_001047434 NM_206831	17575	-	NM_138381 TSC_hg19_v1_chr3_+_16306718 DQ364598 AK307258 BC008322	17894	+	TSC_hg19_v1_chr3_-_16555030 BC051336 BC069209 AK074446 BC098270 BC100667 BC100669 BC121795	266204	-	AL831925|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AK312425|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##NM_054110|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AY358443|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AL832736|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##BC014789|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AB002377|ANKRD28|23243|ankyrin repeat domain 28##NM_015199|ANKRD28|23243|ankyrin repeat domain 28##AK293770|ANKRD28|23243|ankyrin repeat domain 28##NM_001195098|ANKRD28|23243|ankyrin repeat domain 28##AK311618|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##BC010181|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##AK092040|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##AK022970|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##NM_001047434|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##NM_206831|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##NM_138381|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##DQ364598|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##AK307258|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##BC008322|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##BC051336|RFTN1|23180|raftlin, lipid raft linker 1##BC069209|RFTN1|23180|raftlin, lipid raft linker 1##AK074446|RFTN1|23180|raftlin, lipid raft linker 1##BC098270|RFTN1|23180|raftlin, lipid raft linker 1##BC100667|RFTN1|23180|raftlin, lipid raft linker 1##BC100669|RFTN1|23180|raftlin, lipid raft linker 1##BC121795|RFTN1|23180|raftlin, lipid raft linker 1	0.0	
chr17	61503056	61503146	reg1000896.p2	4.778	+	BC144357 TSC_hg19_v1_chr17_+_61271368	-231740	+	NM_025185	-416204	+	AK122947 AK093076 AX747906 BX648705 NM_152598	-617424	-	BC091485 NM_001017917	15089	-	AK095244 NM_001017916 TSC_hg19_v1_chr17_-_61523715 AK301541 AK294403 BC002976 AK303177 AK316606 NM_001915	20535	-	TSC_hg19_v1_chr17_+_61554421 AK296566 AK309514 NM_000789 AK300516 AB208971 J04144	51327	+	BC144357|TANC2|26115|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2##NM_025185|TANC2|26115|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2##AK122947|MARCH10|162333|membrane-associated ring finger (C3HC4) 10##AK093076|MARCH10|162333|membrane-associated ring finger (C3HC4) 10##BX648705|MARCH10|162333|membrane-associated ring finger (C3HC4) 10##NM_152598|MARCH10|162333|membrane-associated ring finger (C3HC4) 10##BC091485|CYB561|1534|cytochrome b-561##NM_001017917|CYB561|1534|cytochrome b-561##AK095244|CYB561|1534|cytochrome b-561##NM_001017916|CYB561|1534|cytochrome b-561##AK301541|CYB561|1534|cytochrome b-561##AK294403|CYB561|1534|cytochrome b-561##BC002976|CYB561|1534|cytochrome b-561##AK303177|CYB561|1534|cytochrome b-561##AK316606|CYB561|1534|cytochrome b-561##NM_001915|CYB561|1534|cytochrome b-561##AK296566|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##AK309514|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##NM_000789|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##AK300516|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##AB208971|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##J04144|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	0.0	
chr19	23457028	23457135	reg1001112.p2	4.778	+	TSC_hg19_v1_chr19_-_23457022 AK023040	-63	-	AK301230 TSC_hg19_v1_chr19_-_23433196	-23882	-	AK131472 TSC_hg19_v1_chr19_+_23299828	-157275	+	TSC_hg19_v1_chr19_-_23578274 AK300294 L11672 AK291256 NM_003430	121183	-	TSC_hg19_v1_chr19_-_23598839 AK022793	141763	-	TSC_hg19_v1_chr19_-_23598867 BC041431	141788	-	AK023040|LOC100132815|100132815|importin 5 pseudogene##AK301230|ZNF724P|440519|zinc finger protein 724, pseudogene##AK131472|ZNF730|100129543|zinc finger protein 730##AK300294|ZNF91|7644|zinc finger protein 91##L11672|ZNF91|7644|zinc finger protein 91##AK291256|ZNF91|7644|zinc finger protein 91##NM_003430|ZNF91|7644|zinc finger protein 91	0.678148	denovo_WM_21:24:0.678
chrX	100662995	100663119	reg1001296.p1	4.764	+	TSC_hg19_v1_chrX_-_100662914 AK222627 AK297148 X05790 AK291095 NM_000169	-102	-	TSC_hg19_v1_chrX_-_100662901 D00039 BT006864 CU678122 X16889 DQ890721 DQ893899 BC002689	-212	-	NM_001199972 NM_001199973 NM_001199974 NM_021029 TSC_hg19_v1_chrX_+_100646002 BC062219 BC001781 AK096711 BC031015 BC070204 AY927233	-17112	+	NM_001032393 NM_019597 TSC_hg19_v1_chrX_+_100663178	92	+	TSC_hg19_v1_chrX_+_100663209 AK294144 BC030103	151	+	AK298133 TSC_hg19_v1_chrX_+_100663213	162	+	AK222627|GLA|2717|galactosidase, alpha##AK297148|GLA|2717|galactosidase, alpha##X05790|GLA|2717|galactosidase, alpha##AK291095|GLA|2717|galactosidase, alpha##NM_000169|GLA|2717|galactosidase, alpha##D00039|GLA|2717|galactosidase, alpha##BT006864|GLA|2717|galactosidase, alpha##X16889|GLA|2717|galactosidase, alpha##DQ890721|GLA|2717|galactosidase, alpha##DQ893899|GLA|2717|galactosidase, alpha##BC002689|GLA|2717|galactosidase, alpha##NM_001199972|RPL36A|6173|ribosomal protein L36a##NM_001199973|RPL36A-HNRNPH2|100529097|RPL36A-HNRNPH2 readthrough##NM_001199974|RPL36A-HNRNPH2|100529097|RPL36A-HNRNPH2 readthrough##NM_021029|RPL36A|6173|ribosomal protein L36a##BC062219|RPL36A|6173|ribosomal protein L36a##BC001781|RPL36A|6173|ribosomal protein L36a##AK096711|RPL36A|6173|ribosomal protein L36a##BC031015|RPL36A|6173|ribosomal protein L36a##BC070204|RPL36A|6173|ribosomal protein L36a##AY927233|RPL36A|6173|ribosomal protein L36a##NM_001032393|HNRNPH2|3188|heterogeneous nuclear ribonucleoprotein H2 (H')##NM_019597|HNRNPH2|3188|heterogeneous nuclear ribonucleoprotein H2 (H')##AK294144|HNRNPH2|3188|heterogeneous nuclear ribonucleoprotein H2 (H')##AK298133|HNRNPH2|3188|heterogeneous nuclear ribonucleoprotein H2 (H')	0.585458	denovo_WM_21:-90:0.523
chr1	98052705	98052867	reg1001451.p1	4.763	+	BC030757 TSC_hg19_v1_chr1_+_97260652	-792203	+	NM_021190 TSC_hg19_v1_chr1_+_97187343 AK092216 AB051232 AK299755 AK299922 AB209266 AF530580 AF530581 AF176085 AK299897 BC016582 AB051233	-865502	+	AB055763 TSC_hg19_v1_chr1_-_97145197	-907590	-	TSC_hg19_v1_chr1_-_98386512 AB003063 BT006740 CU678939 BC008379	333703	-	TSC_hg19_v1_chr1_-_98386557 BC131777 BC131778 BC064027 AK297515 U09178 BC108742 U20938 AK291217	333773	-	TSC_hg19_v1_chr1_-_98386605 NM_000110 NM_001160301	333820	-	NM_021190|PTBP2|58155|polypyrimidine tract binding protein 2##AK092216|PTBP2|58155|polypyrimidine tract binding protein 2##AB051232|PTBP2|58155|polypyrimidine tract binding protein 2##AK299755|PTBP2|58155|polypyrimidine tract binding protein 2##AK299922|PTBP2|58155|polypyrimidine tract binding protein 2##AB209266|PTBP2|58155|polypyrimidine tract binding protein 2##AF530580|PTBP2|58155|polypyrimidine tract binding protein 2##AF530581|PTBP2|58155|polypyrimidine tract binding protein 2##AF176085|PTBP2|58155|polypyrimidine tract binding protein 2##AK299897|PTBP2|58155|polypyrimidine tract binding protein 2##BC016582|PTBP2|58155|polypyrimidine tract binding protein 2##AB051233|PTBP2|58155|polypyrimidine tract binding protein 2##AB003063|DPYD|1806|dihydropyrimidine dehydrogenase##BT006740|DPYD|1806|dihydropyrimidine dehydrogenase##BC008379|DPYD|1806|dihydropyrimidine dehydrogenase##BC131777|DPYD|1806|dihydropyrimidine dehydrogenase##BC131778|DPYD|1806|dihydropyrimidine dehydrogenase##BC064027|DPYD|1806|dihydropyrimidine dehydrogenase##AK297515|DPYD|1806|dihydropyrimidine dehydrogenase##U09178|DPYD|1806|dihydropyrimidine dehydrogenase##BC108742|DPYD|1806|dihydropyrimidine dehydrogenase##U20938|DPYD|1806|dihydropyrimidine dehydrogenase##AK291217|DPYD|1806|dihydropyrimidine dehydrogenase##NM_000110|DPYD|1806|dihydropyrimidine dehydrogenase##NM_001160301|DPYD|1806|dihydropyrimidine dehydrogenase	0.0	
chr2	50389031	50389102	reg1001864.p1	4.760	+	AY429104 BC096831 X68044 JN003607 BC118548 BC125270 M65085 S59900 M95489 AK292562 AK310367 NM_000145 NM_181446	-1007456	-	S57793 M63108 M73746 AK123498 NM_000233	-1406222	-	AK302220 NM_001193487 NM_006872 BC025991 AK223350 AF106857 CU693090 DQ891566 DQ894756 BC064585	-1544091	+	AF064842 NM_138735 TSC_hg19_v1_chr2_-_50574946	185856	-	TSC_hg19_v1_chr2_-_51259258 BC046631	870192	-	EF539882 AK124726 NM_001135659 NM_004801	870538	-	AY429104|FSHR|2492|follicle stimulating hormone receptor##BC096831|FSHR|2492|follicle stimulating hormone receptor##X68044|FSHR|2492|follicle stimulating hormone receptor##JN003607|FSHR|2492|follicle stimulating hormone receptor##BC118548|FSHR|2492|follicle stimulating hormone receptor##BC125270|FSHR|2492|follicle stimulating hormone receptor##M65085|FSHR|2492|follicle stimulating hormone receptor##S59900|FSHR|2492|follicle stimulating hormone receptor##M95489|FSHR|2492|follicle stimulating hormone receptor##AK292562|FSHR|2492|follicle stimulating hormone receptor##AK310367|FSHR|2492|follicle stimulating hormone receptor##NM_000145|FSHR|2492|follicle stimulating hormone receptor##NM_181446|FSHR|2492|follicle stimulating hormone receptor##S57793|LHCGR|3973|luteinizing hormone/choriogonadotropin receptor##M63108|LHCGR|3973|luteinizing hormone/choriogonadotropin receptor##M73746|LHCGR|3973|luteinizing hormone/choriogonadotropin receptor##AK123498|LHCGR|3973|luteinizing hormone/choriogonadotropin receptor##NM_000233|LHCGR|3973|luteinizing hormone/choriogonadotropin receptor##AK302220|GTF2A1L|11036|general transcription factor IIA, 1-like##NM_001193487|GTF2A1L|11036|general transcription factor IIA, 1-like##NM_006872|GTF2A1L|11036|general transcription factor IIA, 1-like##BC025991|GTF2A1L|11036|general transcription factor IIA, 1-like##AK223350|GTF2A1L|11036|general transcription factor IIA, 1-like##AF106857|GTF2A1L|11036|general transcription factor IIA, 1-like##DQ891566|GTF2A1L|11036|general transcription factor IIA, 1-like##DQ894756|GTF2A1L|11036|general transcription factor IIA, 1-like##BC064585|GTF2A1L|11036|general transcription factor IIA, 1-like##AF064842|NRXN1|9378|neurexin 1##NM_138735|NRXN1|9378|neurexin 1##BC046631|NRXN1|9378|neurexin 1##EF539882|NRXN1|9378|neurexin 1##AK124726|NRXN1|9378|neurexin 1##NM_001135659|NRXN1|9378|neurexin 1##NM_004801|NRXN1|9378|neurexin 1	0.0	
chr19	18439331	18439449	reg1000995.p1	4.758	+	TSC_hg19_v1_chr19_-_18433953 AF117235 NM_001252129 NM_012321	-5424	-	TSC_hg19_v1_chr19_-_18433887 AJ238096 AF251218 BC023665 AF182290 BC003652 BC022198 BC000387	-5503	-	TSC_hg19_v1_chr19_-_18392451 X56681	-46922	-	TSC_hg19_v1_chr19_+_18451449 AK289968 NM_017712 AK294497 BC042138 BC028063 AJ278828 AK000215	12017	+	TSC_hg19_v1_chr19_+_18496967 AB000584 AK225425 AK225431 AK291530 NM_004864 BC008962 U88323 BC000529 AF019770 U51731 BT019465	57592	+	BC025744 TSC_hg19_v1_chr19_-_18508433 NM_145256 BC053659 BC033825	69030	-	AF117235|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_001252129|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_012321|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AJ238096|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF251218|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC023665|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF182290|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC003652|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC022198|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC000387|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##X56681|JUND|3727|jun D proto-oncogene##AK289968|PGPEP1|54858|pyroglutamyl-peptidase I##NM_017712|PGPEP1|54858|pyroglutamyl-peptidase I##AK294497|PGPEP1|54858|pyroglutamyl-peptidase I##BC042138|PGPEP1|54858|pyroglutamyl-peptidase I##BC028063|PGPEP1|54858|pyroglutamyl-peptidase I##AJ278828|PGPEP1|54858|pyroglutamyl-peptidase I##AK000215|PGPEP1|54858|pyroglutamyl-peptidase I##AB000584|GDF15|9518|growth differentiation factor 15##AK225431|GDF15|9518|growth differentiation factor 15##AK291530|GDF15|9518|growth differentiation factor 15##NM_004864|GDF15|9518|growth differentiation factor 15##BC008962|GDF15|9518|growth differentiation factor 15##U88323|GDF15|9518|growth differentiation factor 15##BC000529|GDF15|9518|growth differentiation factor 15##AF019770|GDF15|9518|growth differentiation factor 15##U51731|GDF15|9518|growth differentiation factor 15##BT019465|GDF15|9518|growth differentiation factor 15##BC025744|LRRC25|126364|leucine rich repeat containing 25##NM_145256|LRRC25|126364|leucine rich repeat containing 25##BC053659|LRRC25|126364|leucine rich repeat containing 25##BC033825|LRRC25|126364|leucine rich repeat containing 25	1.703959	denovo_WM_21:-17:0.934	denovo_WM_21:50:0.770
chr19	39832860	39832963	reg1001139.p1	4.752	+	BC143548 BC143546 TSC_hg19_v1_chr19_-_39826684 BC093799 BC101818 BC143543 NM_004877	-6211	-	AB001993 BC022207 BC061922 BC080180 TSC_hg19_v1_chr19_-_39826665	-6265	-	NM_020862	-26936	-	TSC_hg19_v1_chr19_+_39833098 AK001073	186	+	TSC_hg19_v1_chr19_+_39833101 BC054518 NM_018028 EF601121	204	+	TSC_hg19_v1_chr19_+_39833151 BC080641	247	+	BC143548|GMFG|9535|glia maturation factor, gamma##BC143546|GMFG|9535|glia maturation factor, gamma##BC093799|GMFG|9535|glia maturation factor, gamma##BC101818|GMFG|9535|glia maturation factor, gamma##BC143543|GMFG|9535|glia maturation factor, gamma##NM_004877|GMFG|9535|glia maturation factor, gamma##AB001993|GMFG|9535|glia maturation factor, gamma##BC022207|GMFG|9535|glia maturation factor, gamma##BC061922|GMFG|9535|glia maturation factor, gamma##BC080180|GMFG|9535|glia maturation factor, gamma##NM_020862|LRFN1|57622|leucine rich repeat and fibronectin type III domain containing 1##AK001073|SAMD4B|55095|sterile alpha motif domain containing 4B##BC054518|SAMD4B|55095|sterile alpha motif domain containing 4B##NM_018028|SAMD4B|55095|sterile alpha motif domain containing 4B##EF601121|SAMD4B|55095|sterile alpha motif domain containing 4B##BC080641|SAMD4B|55095|sterile alpha motif domain containing 4B	0.057349	
chr4	84377007	84377191	reg1001208.p1	4.744	+	BC095473 BC011863 BC065814 BC111502 TSC_hg19_v1_chr4_-_84376999 AK308395 AF436845 AK312725 AK128665 BC015428 NM_133636	-116	-	AF155510 BC051321 FJ517659 FJ517660 GQ337901 GQ337902 HM187643 NM_001166498 NM_006665	-120795	-	TSC_hg19_v1_chr4_-_84256033 AF144325 NM_001098540	-121043	-	AK026620 NM_016067 AF151892 BC005186 TSC_hg19_v1_chr4_+_84377213 AK002008 CU675033	74	+	BC016905 TSC_hg19_v1_chr4_-_84406254 EF531340 BC039573 AY358576 AK022704 AK023676 NM_139076	29175	-	TSC_hg19_v1_chr4_+_84457260 AK055749 AK223543	80173	+	BC095473|HELQ|113510|helicase, POLQ-like##BC011863|HELQ|113510|helicase, POLQ-like##BC065814|HELQ|113510|helicase, POLQ-like##BC111502|HELQ|113510|helicase, POLQ-like##AK308395|HELQ|113510|helicase, POLQ-like##AF436845|HELQ|113510|helicase, POLQ-like##AK312725|HELQ|113510|helicase, POLQ-like##AK128665|HELQ|113510|helicase, POLQ-like##BC015428|HELQ|113510|helicase, POLQ-like##NM_133636|HELQ|113510|helicase, POLQ-like##AF155510|HPSE|10855|heparanase##BC051321|HPSE|10855|heparanase##FJ517659|HPSE|10855|heparanase##FJ517660|HPSE|10855|heparanase##GQ337901|HPSE|10855|heparanase##GQ337902|HPSE|10855|heparanase##HM187643|HPSE|10855|heparanase##NM_001166498|HPSE|10855|heparanase##NM_006665|HPSE|10855|heparanase##AF144325|HPSE|10855|heparanase##NM_001098540|HPSE|10855|heparanase##AK026620|MRPS18C|51023|mitochondrial ribosomal protein S18C##NM_016067|MRPS18C|51023|mitochondrial ribosomal protein S18C##AF151892|MRPS18C|51023|mitochondrial ribosomal protein S18C##BC005186|MRPS18C|51023|mitochondrial ribosomal protein S18C##AK002008|MRPS18C|51023|mitochondrial ribosomal protein S18C##BC016905|FAM175A|84142|family with sequence similarity 175, member A##EF531340|FAM175A|84142|family with sequence similarity 175, member A##BC039573|FAM175A|84142|family with sequence similarity 175, member A##AY358576|FAM175A|84142|family with sequence similarity 175, member A##AK022704|FAM175A|84142|family with sequence similarity 175, member A##AK023676|FAM175A|84142|family with sequence similarity 175, member A##NM_139076|FAM175A|84142|family with sequence similarity 175, member A##AK055749|AGPAT9|84803|1-acylglycerol-3-phosphate O-acyltransferase 9##AK223543|AGPAT9|84803|1-acylglycerol-3-phosphate O-acyltransferase 9	0.26763	denovo_WM_21:-76:0.268
chr11	73472327	73472451	reg1001738.p2	4.743	+	BC034996 TSC_hg19_v1_chr11_-_73472120 BC003617 AK309311 AK223551 AK289748 BC096818 AK057157 BC068486 NM_001243718 NM_002869 NM_198896	-242	-	AK301534 NM_001243719	-1253	-	AK290109 NM_001130036	-112655	+	AF161408 TSC_hg19_v1_chr11_+_73498935 AK297746 NM_016055 BC009764 AK309219 AK310005	26537	+	TSC_hg19_v1_chr11_-_73587892 AL359618 AK000434 NM_016565 BC106036	115507	-	BC028677 TSC_hg19_v1_chr11_+_73588043 AK021910 AK222501 NM_025155 AK316394 AK225520 BC045774 BC021541 BC028628 BC006142 CU675271 AF087895	115656	+	BC034996|RAB6A|5870|RAB6A, member RAS oncogene family##BC003617|RAB6A|5870|RAB6A, member RAS oncogene family##AK309311|RAB6A|5870|RAB6A, member RAS oncogene family##AK223551|RAB6A|5870|RAB6A, member RAS oncogene family##AK289748|RAB6A|5870|RAB6A, member RAS oncogene family##BC096818|RAB6A|5870|RAB6A, member RAS oncogene family##AK057157|RAB6A|5870|RAB6A, member RAS oncogene family##BC068486|RAB6A|5870|RAB6A, member RAS oncogene family##NM_001243718|RAB6A|5870|RAB6A, member RAS oncogene family##NM_002869|RAB6A|5870|RAB6A, member RAS oncogene family##NM_198896|RAB6A|5870|RAB6A, member RAS oncogene family##AK301534|RAB6A|5870|RAB6A, member RAS oncogene family##NM_001243719|RAB6A|5870|RAB6A, member RAS oncogene family##AK290109|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##NM_001130036|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AF161408|MRPL48|51642|mitochondrial ribosomal protein L48##AK297746|MRPL48|51642|mitochondrial ribosomal protein L48##NM_016055|MRPL48|51642|mitochondrial ribosomal protein L48##BC009764|MRPL48|51642|mitochondrial ribosomal protein L48##AK309219|MRPL48|51642|mitochondrial ribosomal protein L48##AK310005|MRPL48|51642|mitochondrial ribosomal protein L48##AL359618|CHCHD8|51287|coiled-coil-helix-coiled-coil-helix domain containing 8##AK000434|CHCHD8|51287|coiled-coil-helix-coiled-coil-helix domain containing 8##NM_016565|CHCHD8|51287|coiled-coil-helix-coiled-coil-helix domain containing 8##BC106036|CHCHD8|51287|coiled-coil-helix-coiled-coil-helix domain containing 8##BC028677|PAAF1|80227|proteasomal ATPase-associated factor 1##AK021910|PAAF1|80227|proteasomal ATPase-associated factor 1##AK222501|PAAF1|80227|proteasomal ATPase-associated factor 1##NM_025155|PAAF1|80227|proteasomal ATPase-associated factor 1##AK316394|PAAF1|80227|proteasomal ATPase-associated factor 1##AK225520|PAAF1|80227|proteasomal ATPase-associated factor 1##BC045774|PAAF1|80227|proteasomal ATPase-associated factor 1##BC021541|PAAF1|80227|proteasomal ATPase-associated factor 1##BC028628|PAAF1|80227|proteasomal ATPase-associated factor 1##BC006142|PAAF1|80227|proteasomal ATPase-associated factor 1##AF087895|PAAF1|80227|proteasomal ATPase-associated factor 1	0.983089	denovo_WM_21:0:0.983
chr13	72392551	72392686	reg1001094.p2	4.736	+	AF252283 TSC_hg19_v1_chr13_-_70682585 AB040923 AK291435 NM_020866	-1710077	-	TSC_hg19_v1_chr13_-_67804469 BX537422 AK054661 NM_020403 NM_203487 BC150296	-4588114	-	AK289924 NM_022843	-10402964	-	TSC_hg19_v1_chr13_-_72440143 AK001000 BC021219 AF069509	47641	-	TSC_hg19_v1_chr13_-_72440621 AJ005670 AL079278	48145	-	TSC_hg19_v1_chr13_-_72441343 AF102546 AF356492 NM_004392 NM_080759 NM_080760	48816	-	AF252283|KLHL1|57626|kelch-like 1 (Drosophila)##AB040923|KLHL1|57626|kelch-like 1 (Drosophila)##AK291435|KLHL1|57626|kelch-like 1 (Drosophila)##NM_020866|KLHL1|57626|kelch-like 1 (Drosophila)##BX537422|PCDH9|5101|protocadherin 9##AK054661|PCDH9|5101|protocadherin 9##NM_020403|PCDH9|5101|protocadherin 9##NM_203487|PCDH9|5101|protocadherin 9##BC150296|PCDH9|5101|protocadherin 9##AK289924|PCDH20|64881|protocadherin 20##NM_022843|PCDH20|64881|protocadherin 20##AK001000|DACH1|1602|dachshund homolog 1 (Drosophila)##BC021219|DACH1|1602|dachshund homolog 1 (Drosophila)##AF069509|DACH1|1602|dachshund homolog 1 (Drosophila)##AJ005670|DACH1|1602|dachshund homolog 1 (Drosophila)##AL079278|DACH1|1602|dachshund homolog 1 (Drosophila)##AF102546|DACH1|1602|dachshund homolog 1 (Drosophila)##AF356492|DACH1|1602|dachshund homolog 1 (Drosophila)##NM_004392|DACH1|1602|dachshund homolog 1 (Drosophila)##NM_080759|DACH1|1602|dachshund homolog 1 (Drosophila)##NM_080760|DACH1|1602|dachshund homolog 1 (Drosophila)	0.0	
chr8	26240819	26240932	reg1001310.p2	4.736	+	NM_004331 TSC_hg19_v1_chr8_+_26240583 AF452712 AK300286 AL132665 BC009603 AF067396 AF079221 AF060922 AK307195 AK300727 AF536326 AB004788 AK290213 BC001559 AB527613 BT019500 BT019501 CR456701 EU831983 EU832076	-291	+	AK303981 NM_001177591	-90144	+	TSC_hg19_v1_chr8_+_26149092 M64929 AY189686	-91681	+	BC047515 TSC_hg19_v1_chr8_-_26371389 BC036489 AK055325 NM_007257	130559	-	TSC_hg19_v1_chr8_+_26371546 AK092377 NM_001197293 AB370195	130753	+	NM_001386 TSC_hg19_v1_chr8_+_26435441 BX647115 BC067109	194526	+	NM_004331|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AF452712|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AK300286|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AL132665|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##BC009603|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AF067396|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AF079221|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AF060922|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AK307195|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AK300727|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AF536326|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AB004788|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AK290213|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##BC001559|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##BT019500|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##BT019501|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##CR456701|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##EU831983|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##EU832076|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AK303981|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##NM_001177591|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##M64929|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##AY189686|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##BC047515|PNMA2|10687|paraneoplastic antigen MA2##BC036489|PNMA2|10687|paraneoplastic antigen MA2##AK055325|PNMA2|10687|paraneoplastic antigen MA2##NM_007257|PNMA2|10687|paraneoplastic antigen MA2##AK092377|DPYSL2|1808|dihydropyrimidinase-like 2##NM_001197293|DPYSL2|1808|dihydropyrimidinase-like 2##AB370195|DPYSL2|1808|dihydropyrimidinase-like 2##NM_001386|DPYSL2|1808|dihydropyrimidinase-like 2##BX647115|DPYSL2|1808|dihydropyrimidinase-like 2##BC067109|DPYSL2|1808|dihydropyrimidinase-like 2	0.53691	denovo_WM_21:-26:0.537
chr19	13001649	13001792	reg1000996.p1	4.735	+	AB463820 BC033580 BC040000 U65404 NM_006563	-3734	-	AK075449 TSC_hg19_v1_chr19_-_12992251 AF047016 AB004574 AK297493 AF045937 AK315358 BC065209 AF060222 AK311145 NM_001375	-9429	-	FJ752529 BT007047 BC010419 TSC_hg19_v1_chr19_-_12992222	-9533	-	TSC_hg19_v1_chr19_+_13001973 AK098370 AK290407 AK298772 NM_000159 NM_013976 AK296446 BC002579 AK300841 AK309892 U69141 CU678052 BT006706 S77773	344	+	TSC_hg19_v1_chr19_-_13030085 AK302373 NM_001105578	28364	-	TSC_hg19_v1_chr19_-_13044521 BC043565 AF042347 BT007198 CR456740 AB528515 CU675431 DQ890745 DQ893915 BC006495 D84471 U07424 AK092093	42771	-	BC033580|KLF1|10661|Kruppel-like factor 1 (erythroid)##BC040000|KLF1|10661|Kruppel-like factor 1 (erythroid)##U65404|KLF1|10661|Kruppel-like factor 1 (erythroid)##NM_006563|KLF1|10661|Kruppel-like factor 1 (erythroid)##AK075449|DNASE2|1777|deoxyribonuclease II, lysosomal##AF047016|DNASE2|1777|deoxyribonuclease II, lysosomal##AB004574|DNASE2|1777|deoxyribonuclease II, lysosomal##AK297493|DNASE2|1777|deoxyribonuclease II, lysosomal##AF045937|DNASE2|1777|deoxyribonuclease II, lysosomal##AK315358|DNASE2|1777|deoxyribonuclease II, lysosomal##BC065209|DNASE2|1777|deoxyribonuclease II, lysosomal##AF060222|DNASE2|1777|deoxyribonuclease II, lysosomal##AK311145|DNASE2|1777|deoxyribonuclease II, lysosomal##NM_001375|DNASE2|1777|deoxyribonuclease II, lysosomal##FJ752529|DNASE2|1777|deoxyribonuclease II, lysosomal##BT007047|DNASE2|1777|deoxyribonuclease II, lysosomal##BC010419|DNASE2|1777|deoxyribonuclease II, lysosomal##AK098370|GCDH|2639|glutaryl-CoA dehydrogenase##AK290407|GCDH|2639|glutaryl-CoA dehydrogenase##AK298772|GCDH|2639|glutaryl-CoA dehydrogenase##NM_000159|GCDH|2639|glutaryl-CoA dehydrogenase##NM_013976|GCDH|2639|glutaryl-CoA dehydrogenase##AK296446|GCDH|2639|glutaryl-CoA dehydrogenase##BC002579|GCDH|2639|glutaryl-CoA dehydrogenase##AK300841|GCDH|2639|glutaryl-CoA dehydrogenase##AK309892|GCDH|2639|glutaryl-CoA dehydrogenase##U69141|GCDH|2639|glutaryl-CoA dehydrogenase##BT006706|GCDH|2639|glutaryl-CoA dehydrogenase##S77773|GCDH|2639|glutaryl-CoA dehydrogenase##AK302373|SYCE2|256126|synaptonemal complex central element protein 2##NM_001105578|SYCE2|256126|synaptonemal complex central element protein 2##BC043565|FARSA|2193|phenylalanyl-tRNA synthetase, alpha subunit##AF042347|FARSA|2193|phenylalanyl-tRNA synthetase, alpha subunit##BT007198|FARSA|2193|phenylalanyl-tRNA synthetase, alpha subunit##CR456740|FARSA|2193|phenylalanyl-tRNA synthetase, alpha subunit##DQ890745|FARSA|2193|phenylalanyl-tRNA synthetase, alpha subunit##DQ893915|FARSA|2193|phenylalanyl-tRNA synthetase, alpha subunit##BC006495|FARSA|2193|phenylalanyl-tRNA synthetase, alpha subunit##D84471|FARSA|2193|phenylalanyl-tRNA synthetase, alpha subunit##U07424|FARSA|2193|phenylalanyl-tRNA synthetase, alpha subunit##AK092093|FARSA|2193|phenylalanyl-tRNA synthetase, alpha subunit	1.136797	denovo_WM_21:13:0.975
chr10	14880044	14880226	reg1001190.p1	4.732	+	TSC_hg19_v1_chr10_-_14880025 BC133042 BC133044 BC144619 NM_001029954 AK301259	-113	-	AK127413 NM_031453	-63240	-	TSC_hg19_v1_chr10_-_14646423 BC072452	-233706	-	TSC_hg19_v1_chr10_+_14880314 BC108738 NM_016299 AK225265 AK225651 AK302452 AK000880 BC065281 BC038845	100	+	TSC_hg19_v1_chr10_+_14880335 AF112210 BC119690 BC119691	203	+	TSC_hg19_v1_chr10_+_14880343 AF143723 AK292323 AB528152 AB587406	236	+	BC133042|CDNF|441549|cerebral dopamine neurotrophic factor##BC133044|CDNF|441549|cerebral dopamine neurotrophic factor##BC144619|CDNF|441549|cerebral dopamine neurotrophic factor##NM_001029954|CDNF|441549|cerebral dopamine neurotrophic factor##AK127413|FAM107B|83641|family with sequence similarity 107, member B##NM_031453|FAM107B|83641|family with sequence similarity 107, member B##BC072452|FAM107B|83641|family with sequence similarity 107, member B##BC108738|HSPA14|51182|heat shock 70kDa protein 14##NM_016299|HSPA14|51182|heat shock 70kDa protein 14##AK225265|HSPA14|51182|heat shock 70kDa protein 14##AK225651|HSPA14|51182|heat shock 70kDa protein 14##AK302452|HSPA14|51182|heat shock 70kDa protein 14##AK000880|HSPA14|51182|heat shock 70kDa protein 14##BC065281|HSPA14|51182|heat shock 70kDa protein 14##BC038845|HSPA14|51182|heat shock 70kDa protein 14##AF112210|HSPA14|51182|heat shock 70kDa protein 14##BC119690|HSPA14|51182|heat shock 70kDa protein 14##BC119691|HSPA14|51182|heat shock 70kDa protein 14##AF143723|HSPA14|51182|heat shock 70kDa protein 14##AK292323|HSPA14|51182|heat shock 70kDa protein 14	1.212705	denovo_WM_21:-46:0.839	denovo_WM_21:112:0.374
chr11	809835	809924	reg1001449.p2	4.718	+	TSC_hg19_v1_chr11_-_809502 AB208832	-363	-	AB209529 TSC_hg19_v1_chr11_-_805240 AB208949 AF274972 NM_145886 NM_145887	-4689	-	TSC_hg19_v1_chr11_-_798268 BC019033 NM_001191061	-11608	-	TSC_hg19_v1_chr11_+_809967 NM_001004 BC005354 BC005920 D28411 AK130959 AK311954 M17887	70	+	TSC_hg19_v1_chr11_+_809996 BC062314 BC007573 AK056066	115	+	TSC_hg19_v1_chr11_+_818913 HQ651812 NM_020376 BC017280	9021	+	AB208832|PIDD|55367|p53-induced death domain protein##AB209529|PIDD|55367|p53-induced death domain protein##AB208949|PIDD|55367|p53-induced death domain protein##AF274972|PIDD|55367|p53-induced death domain protein##NM_145886|PIDD|55367|p53-induced death domain protein##NM_145887|PIDD|55367|p53-induced death domain protein##BC019033|SLC25A22|79751|solute carrier family 25 (mitochondrial carrier: glutamate), member 22##NM_001191061|SLC25A22|79751|solute carrier family 25 (mitochondrial carrier: glutamate), member 22##NM_001004|RPLP2|6181|ribosomal protein, large, P2##BC005354|RPLP2|6181|ribosomal protein, large, P2##BC005920|RPLP2|6181|ribosomal protein, large, P2##D28411|RPLP2|6181|ribosomal protein, large, P2##AK311954|RPLP2|6181|ribosomal protein, large, P2##M17887|RPLP2|6181|ribosomal protein, large, P2##BC062314|RPLP2|6181|ribosomal protein, large, P2##BC007573|RPLP2|6181|ribosomal protein, large, P2##HQ651812|PNPLA2|57104|patatin-like phospholipase domain containing 2##NM_020376|PNPLA2|57104|patatin-like phospholipase domain containing 2##BC017280|PNPLA2|57104|patatin-like phospholipase domain containing 2	0.510292	denovo_WM_21:-21:0.510
chr15	67432897	67433018	reg1001325.p1	4.717	+	AK298139 NM_001145103	-2599	+	NM_001145102 AK316017	-14834	+	NM_005902 TSC_hg19_v1_chr15_+_67358197 BC050743 U68019 U76622 AB464213 EU446487 AB209616	-74556	+	NM_001145104 AK300614 AK301348	25539	+	AB528136 AM393020 AM393411 CR533540 CU691322 TSC_hg19_v1_chr15_-_67547000 AK021568 AL136715 BC058886 BC047026 BC035852 NM_024666	114063	-	TSC_hg19_v1_chr15_+_67547171 BC039463 NM_001031715 NM_022784 AY014282 AK292478 AK304303 BC031041 BC048964 BC039292 AK022538 CU690588	114217	+	AK298139|SMAD3|4088|SMAD family member 3##NM_001145103|SMAD3|4088|SMAD family member 3##NM_001145102|SMAD3|4088|SMAD family member 3##AK316017|SMAD3|4088|SMAD family member 3##NM_005902|SMAD3|4088|SMAD family member 3##BC050743|SMAD3|4088|SMAD family member 3##U68019|SMAD3|4088|SMAD family member 3##U76622|SMAD3|4088|SMAD family member 3##EU446487|SMAD3|4088|SMAD family member 3##AB209616|SMAD3|4088|SMAD family member 3##NM_001145104|SMAD3|4088|SMAD family member 3##AK300614|SMAD3|4088|SMAD family member 3##AK301348|SMAD3|4088|SMAD family member 3##AM393020|AAGAB|79719|alpha- and gamma-adaptin binding protein##AM393411|AAGAB|79719|alpha- and gamma-adaptin binding protein##CR533540|AAGAB|79719|alpha- and gamma-adaptin binding protein##AK021568|AAGAB|79719|alpha- and gamma-adaptin binding protein##AL136715|AAGAB|79719|alpha- and gamma-adaptin binding protein##BC058886|AAGAB|79719|alpha- and gamma-adaptin binding protein##BC047026|AAGAB|79719|alpha- and gamma-adaptin binding protein##BC035852|AAGAB|79719|alpha- and gamma-adaptin binding protein##NM_024666|AAGAB|79719|alpha- and gamma-adaptin binding protein##BC039463|IQCH|64799|IQ motif containing H##NM_001031715|IQCH|64799|IQ motif containing H##NM_022784|IQCH|64799|IQ motif containing H##AY014282|IQCH|64799|IQ motif containing H##AK292478|IQCH|64799|IQ motif containing H##AK304303|IQCH|64799|IQ motif containing H##BC031041|IQCH|64799|IQ motif containing H##BC048964|IQCH|64799|IQ motif containing H##BC039292|IQCH|64799|IQ motif containing H##AK022538|IQCH|64799|IQ motif containing H	0.0	
chr19	47164676	47164812	reg1001098.p1	4.715	+	TSC_hg19_v1_chr19_-_47164311 BC034052 NM_145056	-374	-	AF493875 NM_033258 BC095514	-26805	-	BC017857 L29016 D29634 BC110342 BC075814 D25418 TSC_hg19_v1_chr19_-_47128333 AK315278 NM_000960	-36421	-	BC015472 TSC_hg19_v1_chr19_-_47197232	32455	-	NM_001079882	52832	-	TSC_hg19_v1_chr19_-_47220370 AK300339 AK095884 NM_001079880 NM_001079881 NM_016457	55638	-	BC034052|DACT3|147906|dapper, antagonist of beta-catenin, homolog 3 (Xenopus laevis)##NM_145056|DACT3|147906|dapper, antagonist of beta-catenin, homolog 3 (Xenopus laevis)##AF493875|GNG8|94235|guanine nucleotide binding protein (G protein), gamma 8##NM_033258|GNG8|94235|guanine nucleotide binding protein (G protein), gamma 8##BC095514|GNG8|94235|guanine nucleotide binding protein (G protein), gamma 8##L29016|PTGIR|5739|prostaglandin I2 (prostacyclin) receptor (IP)##D29634|PTGIR|5739|prostaglandin I2 (prostacyclin) receptor (IP)##BC110342|PTGIR|5739|prostaglandin I2 (prostacyclin) receptor (IP)##BC075814|PTGIR|5739|prostaglandin I2 (prostacyclin) receptor (IP)##D25418|PTGIR|5739|prostaglandin I2 (prostacyclin) receptor (IP)##AK315278|PTGIR|5739|prostaglandin I2 (prostacyclin) receptor (IP)##NM_000960|PTGIR|5739|prostaglandin I2 (prostacyclin) receptor (IP)##BC015472|PRKD2|25865|protein kinase D2##NM_001079882|PRKD2|25865|protein kinase D2##AK300339|PRKD2|25865|protein kinase D2##AK095884|PRKD2|25865|protein kinase D2##NM_001079880|PRKD2|25865|protein kinase D2##NM_001079881|PRKD2|25865|protein kinase D2##NM_016457|PRKD2|25865|protein kinase D2	0.183504	
chr19	57988922	57989037	reg1001222.p1	4.712	+	AK294941 AK293825 AK302574 AK301562 CR749225 BC150292 BX647068 NM_001024596 NM_001144068	-65	-	NM_020633	-20873	-	TSC_hg19_v1_chr19_+_57946689 NM_001023561 AK122794	-42290	+	NM_001098491 NM_001098492 NM_001098493 NM_001098494 NM_001098495 NM_001098496 NM_024691 TSC_hg19_v1_chr19_+_57999117 AK316297 AK309427 AK307802 AK026886 AK302135 AK316156 AK304569 BC008297 BC024259 AB209371	10226	+	TSC_hg19_v1_chr19_+_58011305 AK057209 AK160372 BC005167 NM_198542	22325	+	TSC_hg19_v1_chr19_+_58011340 EU446945	22414	+	AK294941|ZNF772|400720|zinc finger protein 772##AK293825|ZNF772|400720|zinc finger protein 772##AK302574|ZNF772|400720|zinc finger protein 772##AK301562|ZNF772|400720|zinc finger protein 772##CR749225|ZNF772|400720|zinc finger protein 772##BC150292|ZNF772|400720|zinc finger protein 772##BX647068|ZNF772|400720|zinc finger protein 772##NM_001024596|ZNF772|400720|zinc finger protein 772##NM_001144068|ZNF772|400720|zinc finger protein 772##NM_020633|VN1R1|57191|vomeronasal 1 receptor 1##NM_001023561|ZNF749|388567|zinc finger protein 749##AK122794|ZNF749|388567|zinc finger protein 749##NM_001098491|ZNF419|79744|zinc finger protein 419##NM_001098492|ZNF419|79744|zinc finger protein 419##NM_001098493|ZNF419|79744|zinc finger protein 419##NM_001098494|ZNF419|79744|zinc finger protein 419##NM_001098495|ZNF419|79744|zinc finger protein 419##NM_001098496|ZNF419|79744|zinc finger protein 419##NM_024691|ZNF419|79744|zinc finger protein 419##AK316297|ZNF419|79744|zinc finger protein 419##AK309427|ZNF419|79744|zinc finger protein 419##AK307802|ZNF419|79744|zinc finger protein 419##AK026886|ZNF419|79744|zinc finger protein 419##AK302135|ZNF419|79744|zinc finger protein 419##AK316156|ZNF419|79744|zinc finger protein 419##AK304569|ZNF419|79744|zinc finger protein 419##BC008297|ZNF419|79744|zinc finger protein 419##BC024259|ZNF419|79744|zinc finger protein 419##AB209371|ZNF419|79744|zinc finger protein 419##AK057209|ZNF773|374928|zinc finger protein 773##AK160372|ZNF773|374928|zinc finger protein 773##BC005167|ZNF773|374928|zinc finger protein 773##NM_198542|ZNF773|374928|zinc finger protein 773##EU446945|ZNF773|374928|zinc finger protein 773	0.877692	denovo_WM_21:5:0.861
chr19	58919879	58919984	reg1001124.p1	4.712	+	NM_001195135	-12475	+	TSC_hg19_v1_chr19_+_58898635 AK223106 AK311938 D28455 NM_001009 BC015405 BC018828 BC018151 BC035830 U14970	-21279	+	TSC_hg19_v1_chr19_-_58892398 BC029960 NM_001129730 NM_138466	-27515	-	TSC_hg19_v1_chr19_+_58920045 AK290068 BC033149 NM_173548	116	+	BC017651 TSC_hg19_v1_chr19_+_58920143 AK298929	199	+	AK057460 NM_003433	31657	-	NM_001195135|LOC646862|646862|uncharacterized LOC646862##AK223106|RPS5|6193|ribosomal protein S5##AK311938|RPS5|6193|ribosomal protein S5##D28455|RPS5|6193|ribosomal protein S5##NM_001009|RPS5|6193|ribosomal protein S5##BC015405|RPS5|6193|ribosomal protein S5##BC018828|RPS5|6193|ribosomal protein S5##BC018151|RPS5|6193|ribosomal protein S5##BC035830|RPS5|6193|ribosomal protein S5##U14970|RPS5|6193|ribosomal protein S5##BC029960|ZNF837|116412|zinc finger protein 837##NM_001129730|ZNF837|116412|zinc finger protein 837##NM_138466|ZNF837|116412|zinc finger protein 837##AK290068|ZNF584|201514|zinc finger protein 584##BC033149|ZNF584|201514|zinc finger protein 584##NM_173548|ZNF584|201514|zinc finger protein 584##BC017651|ZNF584|201514|zinc finger protein 584##AK298929|ZNF584|201514|zinc finger protein 584##AK057460|ZNF132|7691|zinc finger protein 132##NM_003433|ZNF132|7691|zinc finger protein 132	0.205063	denovo_WM_21:-6:0.205
chr11	329563	329687	reg1001217.p2	4.711	+	TSC_hg19_v1_chr11_-_320925 X57352	-8638	-	TSC_hg19_v1_chr11_-_320849 BT006892 AM392723 AM393694 DQ891098 DQ894280 BC070243 BC008417 AK292173 BC022439 BC006794 NM_021034	-8781	-	J04164 NM_003641 TSC_hg19_v1_chr11_+_314039 AK290480 BC000897 X84958 AB590121 BT007173 DQ891094 DQ894276	-15614	+	TSC_hg19_v1_chr11_+_369724 NM_178537 AB089939 BC131528	40140	+	TSC_hg19_v1_chr11_+_394208 BC000081 NM_007183 AK025067 AK223511 Z98265	64587	+	AF053719 TSC_hg19_v1_chr11_+_394242 DQ891692 DQ894875 CU674026	64639	+	X57352|IFITM3|10410|interferon induced transmembrane protein 3##BT006892|IFITM3|10410|interferon induced transmembrane protein 3##AM392723|IFITM3|10410|interferon induced transmembrane protein 3##AM393694|IFITM3|10410|interferon induced transmembrane protein 3##DQ891098|IFITM3|10410|interferon induced transmembrane protein 3##DQ894280|IFITM3|10410|interferon induced transmembrane protein 3##BC070243|IFITM3|10410|interferon induced transmembrane protein 3##BC008417|IFITM3|10410|interferon induced transmembrane protein 3##AK292173|IFITM3|10410|interferon induced transmembrane protein 3##BC022439|IFITM3|10410|interferon induced transmembrane protein 3##BC006794|IFITM3|10410|interferon induced transmembrane protein 3##NM_021034|IFITM3|10410|interferon induced transmembrane protein 3##J04164|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##NM_003641|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##AK290480|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##BC000897|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##X84958|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##BT007173|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##DQ891094|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##DQ894276|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##NM_178537|B4GALNT4|338707|beta-1,4-N-acetyl-galactosaminyl transferase 4##AB089939|B4GALNT4|338707|beta-1,4-N-acetyl-galactosaminyl transferase 4##BC131528|B4GALNT4|338707|beta-1,4-N-acetyl-galactosaminyl transferase 4##BC000081|PKP3|11187|plakophilin 3##NM_007183|PKP3|11187|plakophilin 3##AK025067|PKP3|11187|plakophilin 3##AK223511|PKP3|11187|plakophilin 3##Z98265|PKP3|11187|plakophilin 3##AF053719|PKP3|11187|plakophilin 3##DQ891692|PKP3|11187|plakophilin 3##DQ894875|PKP3|11187|plakophilin 3	0.965996	denovo_WM_21:-8:0.949
chr12	50505520	50505646	reg1000566.p1	4.710	+	AK130162 TSC_hg19_v1_chr12_+_50497790 BC032234 NM_005276 AK295911 L34041 AK312516 DQ890626 DQ893793 CU689308	-7772	+	TSC_hg19_v1_chr12_+_50479124 AK292700 AK293932 AK130517 AB527887 CU679327 EU447009 BC000063 AF109733	-26470	+	TSC_hg19_v1_chr12_+_50479018 NM_003076 NM_139071 U66617 BC009368	-26596	+	TSC_hg19_v1_chr12_+_50506018 BC007849 NM_032901 AK312180	333	+	AB527479 TSC_hg19_v1_chr12_-_50561095 AK294521 BC014637 AK300937 NM_147190 BC033558	55508	-	TSC_hg19_v1_chr12_-_50561112 AK026014	55542	-	AK130162|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##BC032234|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##NM_005276|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##AK295911|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##L34041|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##AK312516|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##DQ890626|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##DQ893793|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##AK292700|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##AK293932|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##AK130517|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##EU447009|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##BC000063|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##AF109733|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##NM_003076|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##NM_139071|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##U66617|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##BC009368|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##BC007849|C12orf62|84987|chromosome 12 open reading frame 62##NM_032901|C12orf62|84987|chromosome 12 open reading frame 62##AK312180|C12orf62|84987|chromosome 12 open reading frame 62##AK294521|CERS5|91012|ceramide synthase 5##BC014637|CERS5|91012|ceramide synthase 5##AK300937|CERS5|91012|ceramide synthase 5##NM_147190|CERS5|91012|ceramide synthase 5##BC033558|CERS5|91012|ceramide synthase 5##AK026014|CERS5|91012|ceramide synthase 5	0.0	
chr14	102414528	102414659	reg1001106.p1	4.706	+	AB451341 CU677587 D26445 AB463199 L42375 TSC_hg19_v1_chr14_+_102276338	-138284	+	TSC_hg19_v1_chr14_+_102276171 NM_002719 NM_178586 NM_178587 AK295449 AK315072 Z69030 U37352 BC016183	-138410	+	NM_001161725 NM_001161726 TSC_hg19_v1_chr14_+_102228166 AL834350 BC051442 AK131391 AK302470	-186407	+	TSC_hg19_v1_chr14_+_102430876 AB290157 NM_001376 AK299878	16235	+	TSC_hg19_v1_chr14_+_102430909 AB002323 AB527134	16368	+	TSC_hg19_v1_chr14_-_102553382 AJ890083 X07270 BC017233 BC001695 AK129557 AK291115 AK291607 AK300126 AK310595 BC121062 X15183	138771	-	AB451341|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##D26445|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##L42375|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_002719|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_178586|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_178587|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK315072|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##Z69030|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##U37352|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##BC016183|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_001161725|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_001161726|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AL834350|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##BC051442|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK131391|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK302470|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AB290157|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##NM_001376|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##AK299878|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##AB002323|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##AJ890083|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##X07270|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC017233|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC001695|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK129557|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK291115|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK291607|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK300126|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK310595|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC121062|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##X15183|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1	0.978262	denovo_WM_21:4:0.895
chrX	48380012	48380171	reg1001120.p1	4.694	+	AK316378 NM_203474 NM_203475 AF317058 AF317059 AF317060 AF317061 AB529146 CU676372 DQ892632 DQ895869	-11956	+	TSC_hg19_v1_chrX_+_48367379 NM_022825 NM_203473 AK293347 AK056340 BC019080 AK057727 AK314745	-12680	+	AF063015 NM_177434 AB590908 CU692806	-43684	+	NM_006579 TSC_hg19_v1_chrX_+_48380224 BC001549 BC001572 Z37986	118	+	TSC_hg19_v1_chrX_+_48398116 NM_002536 AK298884 AK293521 AK293875 AK316199 BC052609 BC101817 BC101819 BC143395 BC041614 BC064334 BC082255 BC125088 BC125089	18012	+	TSC_hg19_v1_chrX_+_48398162 AB449912 AK294776	18113	+	AK316378|PORCN|64840|porcupine homolog (Drosophila)##NM_203474|PORCN|64840|porcupine homolog (Drosophila)##NM_203475|PORCN|64840|porcupine homolog (Drosophila)##AF317058|PORCN|64840|porcupine homolog (Drosophila)##AF317059|PORCN|64840|porcupine homolog (Drosophila)##AF317060|PORCN|64840|porcupine homolog (Drosophila)##AF317061|PORCN|64840|porcupine homolog (Drosophila)##DQ892632|PORCN|64840|porcupine homolog (Drosophila)##DQ895869|PORCN|64840|porcupine homolog (Drosophila)##NM_022825|PORCN|64840|porcupine homolog (Drosophila)##NM_203473|PORCN|64840|porcupine homolog (Drosophila)##AK293347|PORCN|64840|porcupine homolog (Drosophila)##AK056340|PORCN|64840|porcupine homolog (Drosophila)##BC019080|PORCN|64840|porcupine homolog (Drosophila)##AK057727|PORCN|64840|porcupine homolog (Drosophila)##AK314745|PORCN|64840|porcupine homolog (Drosophila)##AF063015|FTSJ1|24140|FtsJ homolog 1 (E. coli)##NM_177434|FTSJ1|24140|FtsJ homolog 1 (E. coli)##NM_006579|EBP|10682|emopamil binding protein (sterol isomerase)##BC001549|EBP|10682|emopamil binding protein (sterol isomerase)##BC001572|EBP|10682|emopamil binding protein (sterol isomerase)##Z37986|EBP|10682|emopamil binding protein (sterol isomerase)##NM_002536|TBC1D25|4943|TBC1 domain family, member 25##AK298884|TBC1D25|4943|TBC1 domain family, member 25##AK293521|TBC1D25|4943|TBC1 domain family, member 25##AK293875|TBC1D25|4943|TBC1 domain family, member 25##AK316199|TBC1D25|4943|TBC1 domain family, member 25##BC052609|TBC1D25|4943|TBC1 domain family, member 25##BC101817|TBC1D25|4943|TBC1 domain family, member 25##BC101819|TBC1D25|4943|TBC1 domain family, member 25##BC143395|TBC1D25|4943|TBC1 domain family, member 25##BC041614|TBC1D25|4943|TBC1 domain family, member 25##BC064334|TBC1D25|4943|TBC1 domain family, member 25##BC082255|TBC1D25|4943|TBC1 domain family, member 25##BC125088|TBC1D25|4943|TBC1 domain family, member 25##BC125089|TBC1D25|4943|TBC1 domain family, member 25##AB449912|TBC1D25|4943|TBC1 domain family, member 25##AK294776|TBC1D25|4943|TBC1 domain family, member 25	0.47419	denovo_WM_21:35:0.349
chr16	69458405	69458590	reg1001003.p2	4.693	+	TSC_hg19_v1_chr16_-_69419884 AF002999 BC024890 NM_005652	-38637	-	TSC_hg19_v1_chr16_-_69419641 U95970	-38862	-	DQ891397 DQ894576 CU676736 AY358268 TSC_hg19_v1_chr16_-_69385690 BC020827 NM_144676	-72814	-	TSC_hg19_v1_chr16_+_69458522 AB009282 NM_030579 BX647922 BC014431	19	+	BC004373 AK291576 TSC_hg19_v1_chr16_+_69458565	67	+	NM_001113178 NM_006599 NM_138713 NM_138714 NM_173214 NM_173215 TSC_hg19_v1_chr16_+_69599868	141371	+	AF002999|TERF2|7014|telomeric repeat binding factor 2##BC024890|TERF2|7014|telomeric repeat binding factor 2##NM_005652|TERF2|7014|telomeric repeat binding factor 2##U95970|TERF2|7014|telomeric repeat binding factor 2##DQ891397|TMED6|146456|transmembrane emp24 protein transport domain containing 6##DQ894576|TMED6|146456|transmembrane emp24 protein transport domain containing 6##AY358268|TMED6|146456|transmembrane emp24 protein transport domain containing 6##BC020827|TMED6|146456|transmembrane emp24 protein transport domain containing 6##NM_144676|TMED6|146456|transmembrane emp24 protein transport domain containing 6##AB009282|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##NM_030579|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##BX647922|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##BC014431|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##BC004373|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##AK291576|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##NM_001113178|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_006599|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_138713|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_138714|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_173214|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_173215|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive	0.094407	
chr19	18314986	18315076	reg1000090.p1	4.689	+	M28210 TSC_hg19_v1_chr19_-_18314858 AF254795 BC011782 AK293467 AK289559 NM_002866	-227	-	TSC_hg19_v1_chr19_+_18304077 NM_032683 BC093008 BC005064 BC028146 AF320622 AF416712 AK094091	-10996	+	TSC_hg19_v1_chr19_+_18284633 AB590284 CU676848 CU689078 DQ884410 DQ892016 DQ895206	-30390	+	NM_001098819 U88712	20271	-	AK300888 AK300983 TSC_hg19_v1_chr19_-_18337249 NM_001098818 U88713	22228	-	NM_000923 U66346	43978	-	M28210|RAB3A|5864|RAB3A, member RAS oncogene family##AF254795|RAB3A|5864|RAB3A, member RAS oncogene family##BC011782|RAB3A|5864|RAB3A, member RAS oncogene family##AK293467|RAB3A|5864|RAB3A, member RAS oncogene family##AK289559|RAB3A|5864|RAB3A, member RAS oncogene family##NM_002866|RAB3A|5864|RAB3A, member RAS oncogene family##NM_032683|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##BC093008|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##BC005064|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##BC028146|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##AF320622|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##AF416712|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##AK094091|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##DQ884410|IFI30|10437|interferon, gamma-inducible protein 30##DQ892016|IFI30|10437|interferon, gamma-inducible protein 30##DQ895206|IFI30|10437|interferon, gamma-inducible protein 30##NM_001098819|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##U88712|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##AK300888|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##AK300983|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##NM_001098818|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##U88713|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##NM_000923|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##U66346|PDE4C|5143|phosphodiesterase 4C, cAMP-specific	1.135724	
chr2	46925882	46926026	reg1000825.p1	4.688	+	TSC_hg19_v1_chr2_+_46844353 NM_014171 AK291298 AF161488 BC018653 BC006980 BC006979	-81601	+	TSC_hg19_v1_chr2_-_46844187 BC021725 BC029408 AK291108 NM_002643 NM_173074	-81737	-	BC010864 D13435 TSC_hg19_v1_chr2_-_46844167 BC039303	-81792	-	TSC_hg19_v1_chr2_+_46926049 AK290194 AK296796 AB014571 AL136896 NM_014011	119	+	TSC_hg19_v1_chr2_+_46926340 BC032862 AF073958 NM_144949	447	+	TSC_hg19_v1_chr2_-_47134945 M23161	209057	-	NM_014171|CRIPT|9419|cysteine-rich PDZ-binding protein##AK291298|CRIPT|9419|cysteine-rich PDZ-binding protein##AF161488|CRIPT|9419|cysteine-rich PDZ-binding protein##BC018653|CRIPT|9419|cysteine-rich PDZ-binding protein##BC006980|CRIPT|9419|cysteine-rich PDZ-binding protein##BC006979|CRIPT|9419|cysteine-rich PDZ-binding protein##BC021725|PIGF|5281|phosphatidylinositol glycan anchor biosynthesis, class F##BC029408|PIGF|5281|phosphatidylinositol glycan anchor biosynthesis, class F##AK291108|PIGF|5281|phosphatidylinositol glycan anchor biosynthesis, class F##NM_002643|PIGF|5281|phosphatidylinositol glycan anchor biosynthesis, class F##NM_173074|PIGF|5281|phosphatidylinositol glycan anchor biosynthesis, class F##D13435|PIGF|5281|phosphatidylinositol glycan anchor biosynthesis, class F##AK290194|SOCS5|9655|suppressor of cytokine signaling 5##AB014571|SOCS5|9655|suppressor of cytokine signaling 5##AL136896|SOCS5|9655|suppressor of cytokine signaling 5##NM_014011|SOCS5|9655|suppressor of cytokine signaling 5##BC032862|SOCS5|9655|suppressor of cytokine signaling 5##AF073958|SOCS5|9655|suppressor of cytokine signaling 5##NM_144949|SOCS5|9655|suppressor of cytokine signaling 5##M23161|MCFD2|90411|multiple coagulation factor deficiency 2	0.0	
chr15	99791451	99791540	reg1001322.p2	4.687	+	TSC_hg19_v1_chr15_-_99791423 AK023230 AK291690	-79	-	TSC_hg19_v1_chr15_-_99789787 BC015728 AF411456 NM_001040655 NM_001040656 NM_001040657 NM_001040658 NM_001040659 NM_001040660 NM_022905	-1789	-	TSC_hg19_v1_chr15_+_99645285 BC151243 AB002351 AJ310521 AJ310522 AJ697971 NM_015286 NM_145728 AF359284	-146255	+	TSC_hg19_v1_chr15_+_99791696 BC047306 NM_144598 AK091588 AK296352 AX747076 AK295161 AK292887 AK293832 AY358082 BC019704	147	+	NM_001130926 NM_001130927 NM_001171894 NM_005587 TSC_hg19_v1_chr15_+_100106173 AB208985	314658	+	TSC_hg19_v1_chr15_+_100106196 AL831995 AK294207	314699	+	AK023230|TTC23|64927|tetratricopeptide repeat domain 23##AK291690|TTC23|64927|tetratricopeptide repeat domain 23##BC015728|TTC23|64927|tetratricopeptide repeat domain 23##AF411456|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040655|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040656|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040657|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040658|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040659|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040660|TTC23|64927|tetratricopeptide repeat domain 23##NM_022905|TTC23|64927|tetratricopeptide repeat domain 23##BC151243|SYNM|23336|synemin, intermediate filament protein##AB002351|SYNM|23336|synemin, intermediate filament protein##AJ310521|SYNM|23336|synemin, intermediate filament protein##AJ310522|SYNM|23336|synemin, intermediate filament protein##AJ697971|SYNM|23336|synemin, intermediate filament protein##NM_015286|SYNM|23336|synemin, intermediate filament protein##NM_145728|SYNM|23336|synemin, intermediate filament protein##AF359284|SYNM|23336|synemin, intermediate filament protein##BC047306|LRRC28|123355|leucine rich repeat containing 28##NM_144598|LRRC28|123355|leucine rich repeat containing 28##AK091588|LRRC28|123355|leucine rich repeat containing 28##AK296352|LRRC28|123355|leucine rich repeat containing 28##AK295161|LRRC28|123355|leucine rich repeat containing 28##AK292887|LRRC28|123355|leucine rich repeat containing 28##AK293832|LRRC28|123355|leucine rich repeat containing 28##AY358082|LRRC28|123355|leucine rich repeat containing 28##BC019704|LRRC28|123355|leucine rich repeat containing 28##NM_001130926|MEF2A|4205|myocyte enhancer factor 2A##NM_001130927|MEF2A|4205|myocyte enhancer factor 2A##NM_001171894|MEF2A|4205|myocyte enhancer factor 2A##NM_005587|MEF2A|4205|myocyte enhancer factor 2A##AB208985|MEF2A|4205|myocyte enhancer factor 2A##AL831995|MEF2A|4205|myocyte enhancer factor 2A##AK294207|MEF2A|4205|myocyte enhancer factor 2A	0.01424	
chr7	6144321	6144439	reg1000879.p2	4.687	+	TSC_hg19_v1_chr7_-_6098822 NM_001134335 NM_014413	-45533	-	TSC_hg19_v1_chr7_-_6098807 AF255050	-45575	-	TSC_hg19_v1_chr7_-_6098780 AM392648 AM393276 CU675439 AF100784 AF183414 AL136563 AL834494 AF181071 AB037790 AF147094 AK075192 BC006524 AK290327 AK295712	-45647	-	TSC_hg19_v1_chr7_+_6144564 NM_032172 AK298164	163	+	TSC_hg19_v1_chr7_+_6144605 AK022759 AY618868 BC060846 AK309375	218	+	AB528964 DQ891736 DQ894912 EU176610 AJ223957 TSC_hg19_v1_chr7_-_6312242 AJ005197 NM_004227 AK313728 BC028717	167851	-	NM_001134335|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##NM_014413|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##AF255050|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##AM392648|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##AM393276|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##AF100784|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##AF183414|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##AL136563|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##AL834494|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##AB037790|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##AF147094|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##AK075192|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##BC006524|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##AK290327|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##AK295712|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##NM_032172|USP42|84132|ubiquitin specific peptidase 42##AK298164|USP42|84132|ubiquitin specific peptidase 42##AK022759|USP42|84132|ubiquitin specific peptidase 42##AY618868|USP42|84132|ubiquitin specific peptidase 42##BC060846|USP42|84132|ubiquitin specific peptidase 42##AK309375|USP42|84132|ubiquitin specific peptidase 42##DQ891736|CYTH3|9265|cytohesin 3##DQ894912|CYTH3|9265|cytohesin 3##EU176610|CYTH3|9265|cytohesin 3##AJ223957|CYTH3|9265|cytohesin 3##AJ005197|CYTH3|9265|cytohesin 3##NM_004227|CYTH3|9265|cytohesin 3##AK313728|CYTH3|9265|cytohesin 3##BC028717|CYTH3|9265|cytohesin 3	0.96556	denovo_WM_21:-55:0.966
chr11	64902513	64902627	reg1001073.p2	4.684	+	TSC_hg19_v1_chr11_-_64902005 AK126912 AL834262 NM_032431 NM_172230	-566	-	BC030530 TSC_hg19_v1_chr11_-_64901988 AB058713 AK074148	-602	-	TSC_hg19_v1_chr11_+_64889802 U39400 BC004378 AB062395	-12762	+	BC137244 BC137246 BC144548 AY820305 NM_001008778	35095	+	NM_001198868 AK315556 TSC_hg19_v1_chr11_+_64948825	46246	+	NM_001198869 TSC_hg19_v1_chr11_+_64949220 BC075862	46627	+	AK126912|SYVN1|84447|synovial apoptosis inhibitor 1, synoviolin##AL834262|SYVN1|84447|synovial apoptosis inhibitor 1, synoviolin##NM_032431|SYVN1|84447|synovial apoptosis inhibitor 1, synoviolin##NM_172230|SYVN1|84447|synovial apoptosis inhibitor 1, synoviolin##BC030530|SYVN1|84447|synovial apoptosis inhibitor 1, synoviolin##AB058713|SYVN1|84447|synovial apoptosis inhibitor 1, synoviolin##AK074148|SYVN1|84447|synovial apoptosis inhibitor 1, synoviolin##U39400|MRPL49|740|mitochondrial ribosomal protein L49##BC004378|MRPL49|740|mitochondrial ribosomal protein L49##AB062395|MRPL49|740|mitochondrial ribosomal protein L49##BC137244|SPDYC|387778|speedy homolog C (Xenopus laevis)##BC137246|SPDYC|387778|speedy homolog C (Xenopus laevis)##BC144548|SPDYC|387778|speedy homolog C (Xenopus laevis)##AY820305|SPDYC|387778|speedy homolog C (Xenopus laevis)##NM_001008778|SPDYC|387778|speedy homolog C (Xenopus laevis)##NM_001198868|CAPN1|823|calpain 1, (mu/I) large subunit##AK315556|CAPN1|823|calpain 1, (mu/I) large subunit##NM_001198869|CAPN1|823|calpain 1, (mu/I) large subunit##BC075862|CAPN1|823|calpain 1, (mu/I) large subunit	0.954011	denovo_WM_21:-25:0.823
chr17	16945543	16945658	reg1001019.p1	4.682	+	AY302137 AK301032 AX772740 AK303298 BC109392 AF023614 AK223453 AX766384 NM_012452 AK313302	-70196	-	TSC_hg19_v1_chr17_+_16593572 EF553518 BC133019 BC144224 BC144225 NM_014695	-351996	+	AK131401 NM_020787	-388439	-	TSC_hg19_v1_chr17_+_16945770 NM_015134 NM_201274 BC136479 AB098507 AB384537 AB189741 AY296247	364	+	TSC_hg19_v1_chr17_-_17109624 AK090899 AX746668	164013	-	TSC_hg19_v1_chr17_-_17109636 BC031263 AK295282 NM_178836	164057	-	AY302137|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##BC109392|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AF023614|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AK223453|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AX766384|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##NM_012452|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AK313302|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##EF553518|CCDC144B|284047|coiled-coil domain containing 144B (pseudogene)##BC133019|CCDC144A|9720|coiled-coil domain containing 144A##BC144224|CCDC144A|9720|coiled-coil domain containing 144A##BC144225|CCDC144A|9720|coiled-coil domain containing 144A##NM_014695|CCDC144A|9720|coiled-coil domain containing 144A##AK131401|ZNF624|57547|zinc finger protein 624##NM_020787|ZNF624|57547|zinc finger protein 624##NM_015134|MPRIP|23164|myosin phosphatase Rho interacting protein##NM_201274|MPRIP|23164|myosin phosphatase Rho interacting protein##BC136479|MPRIP|23164|myosin phosphatase Rho interacting protein##AB098507|MPRIP|23164|myosin phosphatase Rho interacting protein##AB189741|MPRIP|23164|myosin phosphatase Rho interacting protein##AY296247|MPRIP|23164|myosin phosphatase Rho interacting protein##AK090899|PLD6|201164|phospholipase D family, member 6##BC031263|PLD6|201164|phospholipase D family, member 6##AK295282|PLD6|201164|phospholipase D family, member 6##NM_178836|PLD6|201164|phospholipase D family, member 6	0.827489	denovo_WM_21:23:0.683
chr1	236260533	236260680	reg1000777.p2	4.676	+	TSC_hg19_v1_chr1_-_236228670 BC012501	-31866	-	TSC_hg19_v1_chr1_-_236228496 AK297234	-32108	-	TSC_hg19_v1_chr1_-_236228477 NM_002508	-32128	-	BC012100 NM_003272 TSC_hg19_v1_chr1_+_236305838 AK295408 AK312908 AK223632 AK301552 AF027826 AY242135 CR541770	45270	+	CU689552 BC032823 AF252538 AK315351 TSC_hg19_v1_chr1_-_236445259 BC044573	184582	-	TSC_hg19_v1_chr1_-_236445302 AK293941 NM_019891	184710	-	BC012501|NID1|4811|nidogen 1##AK297234|NID1|4811|nidogen 1##NM_002508|NID1|4811|nidogen 1##BC012100|GPR137B|7107|G protein-coupled receptor 137B##NM_003272|GPR137B|7107|G protein-coupled receptor 137B##AK295408|GPR137B|7107|G protein-coupled receptor 137B##AK312908|GPR137B|7107|G protein-coupled receptor 137B##AK223632|GPR137B|7107|G protein-coupled receptor 137B##AK301552|GPR137B|7107|G protein-coupled receptor 137B##AF027826|GPR137B|7107|G protein-coupled receptor 137B##AY242135|GPR137B|7107|G protein-coupled receptor 137B##CR541770|GPR137B|7107|G protein-coupled receptor 137B##BC032823|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AF252538|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK315351|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##BC044573|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK293941|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##NM_019891|ERO1LB|56605|ERO1-like beta (S. cerevisiae)	0.0	
chr6	122720601	122720697	reg1000755.p2	4.676	+	NM_000165 AK312324 AK297764 AK223289 AK294670 AK297402 TSC_hg19_v1_chr6_+_121756792 AK309377 AK316159 AK295460 AK297761 AK309490 M65188 X52947 BC026329	-963824	+	TSC_hg19_v1_chr6_-_121655627 AK131446 AK091554 AX747057 NM_152730	-1065006	-	TSC_hg19_v1_chr6_-_119670927 BC065827 AK025599 AK307383 NM_005907	-3049728	-	TSC_hg19_v1_chr6_+_122720699 NM_001135564 NM_001243094 NM_004506	46	+	TSC_hg19_v1_chr6_+_122720796 AK225593 AK225594 BC112323 M65217 AK294624 BC005329 BC064622 BC121050 BC121051 BC128420 AK316377 AB463722 CU675115 EU446897	167	+	CU688532 CU689596 AL137261 TSC_hg19_v1_chr6_-_122792947 AF164794 AB033079 BC014412 BC028607 BC033029 NM_020755 AK075339 AY358429 AK128781 AF087902	72304	-	NM_000165|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK312324|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK297764|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK223289|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK294670|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK309377|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK295460|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK297761|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK309490|GJA1|2697|gap junction protein, alpha 1, 43kDa##M65188|GJA1|2697|gap junction protein, alpha 1, 43kDa##X52947|GJA1|2697|gap junction protein, alpha 1, 43kDa##BC026329|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK131446|C6orf170|221322|chromosome 6 open reading frame 170##AK091554|C6orf170|221322|chromosome 6 open reading frame 170##NM_152730|C6orf170|221322|chromosome 6 open reading frame 170##BC065827|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##AK025599|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##AK307383|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##NM_005907|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##NM_001135564|HSF2|3298|heat shock transcription factor 2##NM_001243094|HSF2|3298|heat shock transcription factor 2##NM_004506|HSF2|3298|heat shock transcription factor 2##AK225593|HSF2|3298|heat shock transcription factor 2##AK225594|HSF2|3298|heat shock transcription factor 2##BC112323|HSF2|3298|heat shock transcription factor 2##M65217|HSF2|3298|heat shock transcription factor 2##AK294624|HSF2|3298|heat shock transcription factor 2##BC005329|HSF2|3298|heat shock transcription factor 2##BC064622|HSF2|3298|heat shock transcription factor 2##BC121050|HSF2|3298|heat shock transcription factor 2##BC121051|HSF2|3298|heat shock transcription factor 2##BC128420|HSF2|3298|heat shock transcription factor 2##AK316377|HSF2|3298|heat shock transcription factor 2##EU446897|HSF2|3298|heat shock transcription factor 2##AL137261|SERINC1|57515|serine incorporator 1##AF164794|SERINC1|57515|serine incorporator 1##AB033079|SERINC1|57515|serine incorporator 1##BC014412|SERINC1|57515|serine incorporator 1##BC028607|SERINC1|57515|serine incorporator 1##BC033029|SERINC1|57515|serine incorporator 1##NM_020755|SERINC1|57515|serine incorporator 1##AK075339|SERINC1|57515|serine incorporator 1##AY358429|SERINC1|57515|serine incorporator 1##AF087902|SERINC1|57515|serine incorporator 1	0.155352	
chr16	84314742	84314907	reg1001429.p1	4.670	+	BC109203 BC008969 NM_172347	-41495	-	NM_001145400 NM_139174 AK093046 AX747882 AF447586 BC033491 AK315171 CU689630	-90046	+	TSC_hg19_v1_chr16_-_84220644 AK304739 L39059 AB209594 AK299060 AK097031 AK299347 BC028131 AK304261 AK315982 NM_001243156 NM_001243157 NM_001243158 NM_001243159 NM_001243160 NM_005679 NM_139353	-94200	-	AF302109 NM_021197 AF169631 TSC_hg19_v1_chr16_+_84328440 AK075061 BC029159 DQ893365 DQ896682	13664	+	TSC_hg19_v1_chr16_+_84402143 AK300526 AY791884 BX648333 NM_014861 AK316128 CR749829	87318	+	BC023251 TSC_hg19_v1_chr16_-_84538263 AB046829 BC060844 AK291237 NM_020947 AK300132 AK310887	223467	-	BC109203|KCNG4|93107|potassium voltage-gated channel, subfamily G, member 4##BC008969|KCNG4|93107|potassium voltage-gated channel, subfamily G, member 4##NM_172347|KCNG4|93107|potassium voltage-gated channel, subfamily G, member 4##NM_001145400|ADAD2|161931|adenosine deaminase domain containing 2##NM_139174|ADAD2|161931|adenosine deaminase domain containing 2##AK093046|ADAD2|161931|adenosine deaminase domain containing 2##AF447586|ADAD2|161931|adenosine deaminase domain containing 2##BC033491|ADAD2|161931|adenosine deaminase domain containing 2##AK315171|ADAD2|161931|adenosine deaminase domain containing 2##AK304739|TAF1C|9013|TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa##L39059|TAF1C|9013|TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa##AB209594|TAF1C|9013|TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa##AK299060|TAF1C|9013|TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa##AK097031|TAF1C|9013|TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa##AK299347|TAF1C|9013|TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa##BC028131|TAF1C|9013|TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa##AK304261|TAF1C|9013|TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa##AK315982|TAF1C|9013|TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa##NM_001243156|TAF1C|9013|TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa##NM_001243157|TAF1C|9013|TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa##NM_001243158|TAF1C|9013|TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa##NM_001243159|TAF1C|9013|TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa##NM_001243160|TAF1C|9013|TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa##NM_005679|TAF1C|9013|TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa##NM_139353|TAF1C|9013|TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa##AF302109|WFDC1|58189|WAP four-disulfide core domain 1##NM_021197|WFDC1|58189|WAP four-disulfide core domain 1##AF169631|WFDC1|58189|WAP four-disulfide core domain 1##AK075061|WFDC1|58189|WAP four-disulfide core domain 1##BC029159|WFDC1|58189|WAP four-disulfide core domain 1##DQ893365|WFDC1|58189|WAP four-disulfide core domain 1##DQ896682|WFDC1|58189|WAP four-disulfide core domain 1##AK300526|ATP2C2|9914|ATPase, Ca++ transporting, type 2C, member 2##AY791884|ATP2C2|9914|ATPase, Ca++ transporting, type 2C, member 2##BX648333|ATP2C2|9914|ATPase, Ca++ transporting, type 2C, member 2##NM_014861|ATP2C2|9914|ATPase, Ca++ transporting, type 2C, member 2##AK316128|ATP2C2|9914|ATPase, Ca++ transporting, type 2C, member 2##CR749829|ATP2C2|9914|ATPase, Ca++ transporting, type 2C, member 2##BC023251|KIAA1609|57707|KIAA1609##AB046829|KIAA1609|57707|KIAA1609##BC060844|KIAA1609|57707|KIAA1609##AK291237|KIAA1609|57707|KIAA1609##NM_020947|KIAA1609|57707|KIAA1609##AK300132|KIAA1609|57707|KIAA1609##AK310887|KIAA1609|57707|KIAA1609	0.890475	denovo_WM_21:20:0.203	denovo_WM_21:58:0.612
chr19	40315318	40315503	reg1000922.p2	4.669	+	NM_001143832	-48177	+	FJ613334 BC119711 BC119712 FJ613335 L01664 NM_001828	-86771	-	AF267852 AF367430 AF367431 AF367432 NM_020129 NM_203471 BC022257 AK312040 FJ613341 FJ613342	-120367	+	TSC_hg19_v1_chr19_-_40324779 AF205861 BC025291 AK074971 BC009688 AK302127 BC018751 NM_004714 NM_006483 NM_006484 Y17999	9388	-	BC019609 BC015218 TSC_hg19_v1_chr19_-_40331308 AB451384 BT006830 BT020144 CR457069	15881	-	AB463635 M59849 TSC_hg19_v1_chr19_-_40336992	21558	-	NM_001143832|LEUTX|342900|leucine twenty homeobox##FJ613334|CLC|1178|Charcot-Leyden crystal protein##BC119711|CLC|1178|Charcot-Leyden crystal protein##BC119712|CLC|1178|Charcot-Leyden crystal protein##FJ613335|CLC|1178|Charcot-Leyden crystal protein##L01664|CLC|1178|Charcot-Leyden crystal protein##NM_001828|CLC|1178|Charcot-Leyden crystal protein##AF267852|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367430|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367431|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367432|LGALS14|56891|lectin, galactoside-binding, soluble, 14##NM_020129|LGALS14|56891|lectin, galactoside-binding, soluble, 14##NM_203471|LGALS14|56891|lectin, galactoside-binding, soluble, 14##BC022257|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AK312040|LGALS14|56891|lectin, galactoside-binding, soluble, 14##FJ613341|LGALS14|56891|lectin, galactoside-binding, soluble, 14##FJ613342|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF205861|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC025291|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##AK074971|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC009688|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##AK302127|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC018751|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##NM_004714|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##NM_006483|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##NM_006484|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##Y17999|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC019609|FBL|2091|fibrillarin##BC015218|FBL|2091|fibrillarin##AB451384|FBL|2091|fibrillarin##BT006830|FBL|2091|fibrillarin##BT020144|FBL|2091|fibrillarin##CR457069|FBL|2091|fibrillarin##M59849|FBL|2091|fibrillarin	0.593601	denovo_WM_21:16:0.594
chr18	56403917	56404020	reg1001160.p2	4.658	+	TSC_hg19_v1_chr18_+_56338830 AB528440 DQ892319 DQ895521	-65123	+	TSC_hg19_v1_chr18_+_56338790 AB026118	-65171	+	TSC_hg19_v1_chr18_+_56338693 AF130356 BC030143	-65240	+	NM_018181 AF295077 BC130618 BC130620	126151	+	TSC_hg19_v1_chr18_+_56530714 AB046849	126887	+	TSC_hg19_v1_chr18_+_56531281 BC036366	127381	+	DQ892319|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##DQ895521|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##AB026118|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##AF130356|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##BC030143|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##NM_018181|ZNF532|55205|zinc finger protein 532##AF295077|ZNF532|55205|zinc finger protein 532##BC130618|ZNF532|55205|zinc finger protein 532##BC130620|ZNF532|55205|zinc finger protein 532##AB046849|ZNF532|55205|zinc finger protein 532##BC036366|ZNF532|55205|zinc finger protein 532	0.0	
chr1	153936071	153936177	reg1001142.p2	4.656	+	BC047288 BC069261 TSC_hg19_v1_chr1_-_153936009 BC007886 BC002563 AJ243649 AJ271671 AK293389 AK297983 AK300244 AK075257	-126	-	CR457217 DQ893619 DQ895350 CU675849 CU678404 BC003152 AF132942 TSC_hg19_v1_chr1_-_153935228	-915	-	TSC_hg19_v1_chr1_-_153931120 AY360172 NM_181715	-5007	-	BC014303 NM_014437	4063	-	AK297703 TSC_hg19_v1_chr1_+_153940377 AY049977 AK309767 AK304665 AB052778 NM_130898 BC038962	4250	+	AF151056 AF131797 TSC_hg19_v1_chr1_-_153950108 BC001667 BC019277 BC000996	13938	-	BC047288|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##BC069261|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##BC007886|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##BC002563|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##AJ243649|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##AJ271671|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##AK293389|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##AK297983|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##AK300244|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##AK075257|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##CR457217|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##DQ893619|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##DQ895350|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##BC003152|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##AF132942|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##AY360172|CRTC2|200186|CREB regulated transcription coactivator 2##NM_181715|CRTC2|200186|CREB regulated transcription coactivator 2##BC014303|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##NM_014437|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##AK297703|CREB3L4|148327|cAMP responsive element binding protein 3-like 4##AY049977|CREB3L4|148327|cAMP responsive element binding protein 3-like 4##AK304665|CREB3L4|148327|cAMP responsive element binding protein 3-like 4##AB052778|CREB3L4|148327|cAMP responsive element binding protein 3-like 4##NM_130898|CREB3L4|148327|cAMP responsive element binding protein 3-like 4##BC038962|CREB3L4|148327|cAMP responsive element binding protein 3-like 4##AF151056|JTB|10899|jumping translocation breakpoint##AF131797|JTB|10899|jumping translocation breakpoint##BC001667|JTB|10899|jumping translocation breakpoint##BC019277|JTB|10899|jumping translocation breakpoint##BC000996|JTB|10899|jumping translocation breakpoint	0.106053	
chr20	56004893	56005078	reg1001047.p2	4.650	+	TSC_hg19_v1_chr20_+_55966453 NM_017495 NM_183425 AF432218	-38528	+	NM_001190472	-70108	-	AK292247 AY349350 NM_001015885	-78384	+	BC130486 AF336042 DQ778111 DQ778124 DQ778125 DQ778126 DQ778127 DQ778128 DQ778129 NM_080618 BC060763 AK313990 AK128070	95216	-	NM_002591 AK290802 TSC_hg19_v1_chr20_+_56136165 AK300072 BC023978 BX648510 L05144	131172	+	BC131706 AK314062 AK290918 BC028218 AJ300575 AX775973 AX775975 AK122761 NM_001160417 NM_001160418 NM_001160419 NM_030776	190553	-	NM_017495|RBM38|55544|RNA binding motif protein 38##NM_183425|RBM38|55544|RNA binding motif protein 38##AF432218|RBM38|55544|RNA binding motif protein 38##NM_001190472|MTRNR2L3|100462983|MT-RNR2-like 3##AK292247|RAE1|8480|RAE1 RNA export 1 homolog (S. pombe)##AY349350|RAE1|8480|RAE1 RNA export 1 homolog (S. pombe)##NM_001015885|RAE1|8480|RAE1 RNA export 1 homolog (S. pombe)##BC130486|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##AF336042|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778111|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778124|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778125|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778126|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778127|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778128|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778129|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##NM_080618|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##BC060763|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##AK313990|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##AK128070|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##NM_002591|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##AK290802|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##AK300072|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##BC023978|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##BX648510|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##L05144|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##BC131706|ZBP1|81030|Z-DNA binding protein 1##AK314062|ZBP1|81030|Z-DNA binding protein 1##AK290918|ZBP1|81030|Z-DNA binding protein 1##BC028218|ZBP1|81030|Z-DNA binding protein 1##AJ300575|ZBP1|81030|Z-DNA binding protein 1##AX775973|ZBP1|81030|Z-DNA binding protein 1##AX775975|ZBP1|81030|Z-DNA binding protein 1##AK122761|ZBP1|81030|Z-DNA binding protein 1##NM_001160417|ZBP1|81030|Z-DNA binding protein 1##NM_001160418|ZBP1|81030|Z-DNA binding protein 1##NM_001160419|ZBP1|81030|Z-DNA binding protein 1##NM_030776|ZBP1|81030|Z-DNA binding protein 1	0.210679	
chr12	51566900	51567014	reg1001037.p2	4.648	+	TSC_hg19_v1_chr12_-_51566921 U03494 NM_001173452 NM_001173453 NM_005653	-51	-	TSC_hg19_v1_chr12_-_51566607 BC003634	-326	-	TSC_hg19_v1_chr12_-_51566577 M84810 AK291264 AK308087	-390	-	AL832881 NM_002702	24992	-	AK095191 TSC_hg19_v1_chr12_-_51611589	44576	-	NM_001136264 NM_001136266 NM_001136267 NM_001136268 NM_001136269 NM_014764 TSC_hg19_v1_chr12_+_51632559	65589	+	U03494|TFCP2|7024|transcription factor CP2##NM_001173452|TFCP2|7024|transcription factor CP2##NM_001173453|TFCP2|7024|transcription factor CP2##NM_005653|TFCP2|7024|transcription factor CP2##BC003634|TFCP2|7024|transcription factor CP2##M84810|TFCP2|7024|transcription factor CP2##AK291264|TFCP2|7024|transcription factor CP2##AK308087|TFCP2|7024|transcription factor CP2##AL832881|POU6F1|5463|POU class 6 homeobox 1##NM_002702|POU6F1|5463|POU class 6 homeobox 1##AK095191|POU6F1|5463|POU class 6 homeobox 1##NM_001136264|DAZAP2|9802|DAZ associated protein 2##NM_001136266|DAZAP2|9802|DAZ associated protein 2##NM_001136267|DAZAP2|9802|DAZ associated protein 2##NM_001136268|DAZAP2|9802|DAZ associated protein 2##NM_001136269|DAZAP2|9802|DAZ associated protein 2##NM_014764|DAZAP2|9802|DAZ associated protein 2	0.183966	
chr3	44903242	44903371	reg1000851.p1	4.648	+	TSC_hg19_v1_chr3_+_44803285 AB035898 AK307674 BC117174 BC143752	-99993	+	NM_020242 TSC_hg19_v1_chr3_+_44803265	-100069	+	TSC_hg19_v1_chr3_-_44803112 BC016790 BC070360 AK289549 BC008468 NM_020696	-100173	-	TSC_hg19_v1_chr3_+_44903403 AL834253 BC019851 NM_144638	85	+	NM_003241 AK125536 AK312936 AK300523 BC007003 L34840 U31905 U79008 Y09559 CU675487 DQ896505 EU176444	12827	+	BC015467 TSC_hg19_v1_chr3_-_45017670 AF247703 NM_001135179 NM_016598	114335	-	AB035898|KIF15|56992|kinesin family member 15##AK307674|KIF15|56992|kinesin family member 15##BC117174|KIF15|56992|kinesin family member 15##BC143752|KIF15|56992|kinesin family member 15##NM_020242|KIF15|56992|kinesin family member 15##BC016790|KIAA1143|57456|KIAA1143##BC070360|KIAA1143|57456|KIAA1143##AK289549|KIAA1143|57456|KIAA1143##BC008468|KIAA1143|57456|KIAA1143##NM_020696|KIAA1143|57456|KIAA1143##AL834253|TMEM42|131616|transmembrane protein 42##BC019851|TMEM42|131616|transmembrane protein 42##NM_144638|TMEM42|131616|transmembrane protein 42##NM_003241|TGM4|7047|transglutaminase 4 (prostate)##AK125536|TGM4|7047|transglutaminase 4 (prostate)##AK312936|TGM4|7047|transglutaminase 4 (prostate)##AK300523|TGM4|7047|transglutaminase 4 (prostate)##BC007003|TGM4|7047|transglutaminase 4 (prostate)##L34840|TGM4|7047|transglutaminase 4 (prostate)##U31905|TGM4|7047|transglutaminase 4 (prostate)##U79008|TGM4|7047|transglutaminase 4 (prostate)##Y09559|TGM4|7047|transglutaminase 4 (prostate)##DQ896505|TGM4|7047|transglutaminase 4 (prostate)##EU176444|TGM4|7047|transglutaminase 4 (prostate)##BC015467|ZDHHC3|51304|zinc finger, DHHC-type containing 3##AF247703|ZDHHC3|51304|zinc finger, DHHC-type containing 3##NM_001135179|ZDHHC3|51304|zinc finger, DHHC-type containing 3##NM_016598|ZDHHC3|51304|zinc finger, DHHC-type containing 3	0.224686	denovo_WM_21:51:0.225
chr8	119511891	119511961	reg1001646.p2	4.644	+	AK313129 S79639 TSC_hg19_v1_chr8_-_119124066 NM_000127	-387965	-	TSC_hg19_v1_chr8_+_118532970 BC008226 FM179284 AB463866 DQ891518 DQ894708 AY083305	-978884	+	TSC_hg19_v1_chr8_+_118532964 NM_080651	-978968	+	BC121818 BC124554 AK096777 TSC_hg19_v1_chr8_-_119634135	122199	-	TSC_hg19_v1_chr8_-_119634214 NM_001101676 NM_207506 AK311704	122281	-	AB002146 AB528441 CU688830 DQ892264 DQ895466 AK223155 AK308524 TSC_hg19_v1_chr8_-_119964125 U94332 BC011023 BC030155 NM_002546	452294	-	AK313129|EXT1|2131|exostosin 1##S79639|EXT1|2131|exostosin 1##NM_000127|EXT1|2131|exostosin 1##BC008226|MED30|90390|mediator complex subunit 30##FM179284|MED30|90390|mediator complex subunit 30##DQ891518|MED30|90390|mediator complex subunit 30##DQ894708|MED30|90390|mediator complex subunit 30##AY083305|MED30|90390|mediator complex subunit 30##NM_080651|MED30|90390|mediator complex subunit 30##BC121818|SAMD12|401474|sterile alpha motif domain containing 12##BC124554|SAMD12|401474|sterile alpha motif domain containing 12##AK096777|SAMD12|401474|sterile alpha motif domain containing 12##NM_001101676|SAMD12|401474|sterile alpha motif domain containing 12##NM_207506|SAMD12|401474|sterile alpha motif domain containing 12##AK311704|SAMD12|401474|sterile alpha motif domain containing 12##AB002146|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ892264|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ895466|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK223155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK308524|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##U94332|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC011023|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC030155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##NM_002546|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b	0.0	
chr7	58021855	58021926	reg1001195.p2	4.643	+	AK131575 NM_001159279	-512008	+	AF277624 NM_033273	-814320	-	Y10275 TSC_hg19_v1_chr7_-_56184079 BC043523 NM_001145712	-1837847	-	NM_001159522	5483930	+	NM_001159524	5645690	+	BC033523 NM_153363	5666961	+	AK131575|ZNF716|441234|zinc finger protein 716##NM_001159279|ZNF716|441234|zinc finger protein 716##AF277624|ZNF479|90827|zinc finger protein 479##NM_033273|ZNF479|90827|zinc finger protein 479##BC043523|LOC389493|389493|uncharacterized protein LOC389493##NM_001145712|LOC389493|389493|uncharacterized protein LOC389493##NM_001159522|ZNF727|442319|zinc finger protein 727##NM_001159524|ZNF735|730291|zinc finger protein 735##BC033523|ZNF679|168417|zinc finger protein 679##NM_153363|ZNF679|168417|zinc finger protein 679	0.0	
chr19	42927760	42927875	reg1001430.p2	4.638	+	TSC_hg19_v1_chr19_+_42901325 AK311181	-26505	+	BC101197 BC101198 AB049591 AK312080 NM_032488	-33386	-	AB011541 BC153880 NM_001410 TSC_hg19_v1_chr19_+_42829786	-98031	+	TSC_hg19_v1_chr19_-_42928157 BC029301	396	-	AK309893 AK292482 BC029961 BC070041 NM_005357 U40002	3721	-	BC093946 BC112095 AK292985 AY358433 NM_198477 AY598464	19307	-	BC101197|CNFN|84518|cornifelin##BC101198|CNFN|84518|cornifelin##AB049591|CNFN|84518|cornifelin##AK312080|CNFN|84518|cornifelin##NM_032488|CNFN|84518|cornifelin##AB011541|MEGF8|1954|multiple EGF-like-domains 8##BC153880|MEGF8|1954|multiple EGF-like-domains 8##NM_001410|MEGF8|1954|multiple EGF-like-domains 8##BC029301|LIPE|3991|lipase, hormone-sensitive##AK292482|LIPE|3991|lipase, hormone-sensitive##BC029961|LIPE|3991|lipase, hormone-sensitive##BC070041|LIPE|3991|lipase, hormone-sensitive##NM_005357|LIPE|3991|lipase, hormone-sensitive##U40002|LIPE|3991|lipase, hormone-sensitive##BC093946|CXCL17|284340|chemokine (C-X-C motif) ligand 17##BC112095|CXCL17|284340|chemokine (C-X-C motif) ligand 17##AK292985|CXCL17|284340|chemokine (C-X-C motif) ligand 17##AY358433|CXCL17|284340|chemokine (C-X-C motif) ligand 17##NM_198477|CXCL17|284340|chemokine (C-X-C motif) ligand 17##AY598464|CXCL17|284340|chemokine (C-X-C motif) ligand 17	0.055497	
chr11	65479426	65479525	reg1001002.p2	4.637	+	TSC_hg19_v1_chr11_-_65430567 U88316	-48918	-	TSC_hg19_v1_chr11_-_65430427 NM_001145138 NM_001243984 NM_001243985 NM_021975	-49034	-	TSC_hg19_v1_chr11_-_65430388 BC033522 BC011603 BC110830 BC014095 M62399 BC069248 AK308020 AK308478 AK303262	-49161	-	NM_001206833 NM_006388 NM_182709 NM_182710 AK313297 U74667 AK225100 AK226002	22	+	BC117167 BC143290 BC143296 BC093032 TSC_hg19_v1_chr11_+_65479722 AK304664 BC064912 U67734 AB463743 HQ258620 BC013211 BC000166 U40989	300	+	TSC_hg19_v1_chr11_-_65487976 L08647	8494	-	NM_001145138|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##NM_001243984|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##NM_001243985|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##NM_021975|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##BC033522|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##BC011603|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##BC110830|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##BC014095|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##M62399|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##BC069248|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##AK308020|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##AK308478|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##AK303262|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##NM_001206833|KAT5|10524|K(lysine) acetyltransferase 5##NM_006388|KAT5|10524|K(lysine) acetyltransferase 5##NM_182709|KAT5|10524|K(lysine) acetyltransferase 5##NM_182710|KAT5|10524|K(lysine) acetyltransferase 5##AK313297|KAT5|10524|K(lysine) acetyltransferase 5##U74667|KAT5|10524|K(lysine) acetyltransferase 5##AK225100|KAT5|10524|K(lysine) acetyltransferase 5##AK226002|KAT5|10524|K(lysine) acetyltransferase 5##BC117167|KAT5|10524|K(lysine) acetyltransferase 5##BC143290|KAT5|10524|K(lysine) acetyltransferase 5##BC143296|KAT5|10524|K(lysine) acetyltransferase 5##BC093032|KAT5|10524|K(lysine) acetyltransferase 5##AK304664|KAT5|10524|K(lysine) acetyltransferase 5##BC064912|KAT5|10524|K(lysine) acetyltransferase 5##U67734|KAT5|10524|K(lysine) acetyltransferase 5##HQ258620|KAT5|10524|K(lysine) acetyltransferase 5##BC013211|KAT5|10524|K(lysine) acetyltransferase 5##BC000166|KAT5|10524|K(lysine) acetyltransferase 5##U40989|KAT5|10524|K(lysine) acetyltransferase 5##L08647|RNASEH2C|84153|ribonuclease H2, subunit C	0.0	
chr1	235491585	235491699	reg1001214.p1	4.634	+	TSC_hg19_v1_chr1_-_235491495 AF214114 AK057552 NM_016374 NM_031371	-130	-	TSC_hg19_v1_chr1_-_235491491 BC048959	-151	-	BC130418 BC143719 TSC_hg19_v1_chr1_-_235491484 BC062536 BX648820	-175	-	NM_001037277 TSC_hg19_v1_chr1_+_235491884 AF057698 AK025139 BC005252 AK293278 AB019036 AB016043 AF125394	219	+	AK309831 TSC_hg19_v1_chr1_+_235492306	653	+	NM_001079515 NM_003193 TSC_hg19_v1_chr1_+_235530744 AK296185 AK298050	39101	+	AF214114|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##AK057552|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##NM_016374|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##NM_031371|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##BC048959|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##BC130418|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##BC143719|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##BC062536|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##BX648820|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##NM_001037277|GGPS1|9453|geranylgeranyl diphosphate synthase 1##AF057698|GGPS1|9453|geranylgeranyl diphosphate synthase 1##AK025139|GGPS1|9453|geranylgeranyl diphosphate synthase 1##BC005252|GGPS1|9453|geranylgeranyl diphosphate synthase 1##AK293278|GGPS1|9453|geranylgeranyl diphosphate synthase 1##AB019036|GGPS1|9453|geranylgeranyl diphosphate synthase 1##AB016043|GGPS1|9453|geranylgeranyl diphosphate synthase 1##AF125394|GGPS1|9453|geranylgeranyl diphosphate synthase 1##NM_001079515|TBCE|6905|tubulin folding cofactor E##NM_003193|TBCE|6905|tubulin folding cofactor E##AK296185|TBCE|6905|tubulin folding cofactor E##AK298050|TBCE|6905|tubulin folding cofactor E	1.102889	denovo_WM_21:3:0.898	denovo_WM_21:-37:0.205
chr1	112938720	112938832	reg1000985.p1	4.633	+	AY863198 AF120491 NM_004980 NM_172198	-407054	-	TSC_hg19_v1_chr1_+_112298524 AK301697 AK001506 BC031062 BC011556 AF106019 AF155803 AK314312 DQ892249 DQ895449 CU679958	-640227	+	AL137199 NM_198926 AK293989 TSC_hg19_v1_chr1_-_112298450	-640341	-	NM_018704 TSC_hg19_v1_chr1_+_112938844 AK023340	50	+	TSC_hg19_v1_chr1_+_112938871 BC016029 AK022544 AK092791 AX747733	92	+	AB045116 NM_004185	71263	+	AF120491|KCND3|3752|potassium voltage-gated channel, Shal-related subfamily, member 3##NM_004980|KCND3|3752|potassium voltage-gated channel, Shal-related subfamily, member 3##NM_172198|KCND3|3752|potassium voltage-gated channel, Shal-related subfamily, member 3##AK301697|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AK001506|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##BC031062|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##BC011556|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AF106019|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AF155803|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AK314312|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##DQ892249|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##DQ895449|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AL137199|FAM212B|55924|family with sequence similarity 212, member B##NM_198926|FAM212B|55924|family with sequence similarity 212, member B##AK293989|FAM212B|55924|family with sequence similarity 212, member B##NM_018704|CTTNBP2NL|55917|CTTNBP2 N-terminal like##AK023340|CTTNBP2NL|55917|CTTNBP2 N-terminal like##BC016029|CTTNBP2NL|55917|CTTNBP2 N-terminal like##AK022544|CTTNBP2NL|55917|CTTNBP2 N-terminal like##AK092791|LOC100129406|100129406|uncharacterized LOC100129406##AB045116|WNT2B|7482|wingless-type MMTV integration site family, member 2B##NM_004185|WNT2B|7482|wingless-type MMTV integration site family, member 2B	0.0	
chr6	9528343	9528461	reg1001569.p2	4.623	+	TSC_hg19_v1_chr6_+_8435870 BC040612	-1092514	+	BC006973 TSC_hg19_v1_chr6_-_8435751 BX647208 AK309222 AK304250 BX648022 AK303940 AK313522 BX538271 BX641086 NM_001142540 NM_001142541 NM_015948	-1092694	-	AB011079 BT007306 CU675089 DQ893502 EU176776 TSC_hg19_v1_chr6_-_8102773 AF054186 BC005291 NM_001135650 NM_004280	-1425612	-	BC017754 NM_001032280 TSC_hg19_v1_chr6_-_10412623	884214	-	FJ794945 M61156 M36711 X52611 TSC_hg19_v1_chr6_-_10415305	886873	-	BC071713 NM_003220 TSC_hg19_v1_chr6_-_10415496	887066	-	BC040612|LOC100506207|100506207|uncharacterized LOC100506207##BC006973|SLC35B3|51000|solute carrier family 35, member B3##BX647208|SLC35B3|51000|solute carrier family 35, member B3##AK304250|SLC35B3|51000|solute carrier family 35, member B3##BX648022|SLC35B3|51000|solute carrier family 35, member B3##AK303940|SLC35B3|51000|solute carrier family 35, member B3##AK313522|SLC35B3|51000|solute carrier family 35, member B3##BX538271|SLC35B3|51000|solute carrier family 35, member B3##BX641086|SLC35B3|51000|solute carrier family 35, member B3##NM_001142540|SLC35B3|51000|solute carrier family 35, member B3##NM_001142541|SLC35B3|51000|solute carrier family 35, member B3##NM_015948|SLC35B3|51000|solute carrier family 35, member B3##AB011079|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##BT007306|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##DQ893502|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##EU176776|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##AF054186|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##BC005291|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##NM_001135650|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##NM_004280|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##BC017754|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##NM_001032280|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##FJ794945|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##M61156|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##M36711|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##X52611|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##BC071713|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##NM_003220|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)	0.0	
chr12	53746631	53746702	reg1001205.p2	4.622	+	AY150674 NM_001173467	-16663	-	AB527932 EU446563 BC101549 BC113613 AY150673 AF477981 NM_152860 AF466179	-17183	-	TSC_hg19_v1_chr12_-_53715374 AK293342 BC000659 BC018836 AY237818 NM_001173466 NM_015665	-31289	-	TSC_hg19_v1_chr12_+_53773935 BC062539 NM_001251825 NM_138473 AF255682 AJ272134	27324	+	BC043224 NM_003109	27758	+	NM_001164690 NM_001164691 NM_020547 AK313593 AF172932 BC126316 BC136356 AY714878 HQ258327	71012	+	AY150674|SP7|121340|Sp7 transcription factor##NM_001173467|SP7|121340|Sp7 transcription factor##EU446563|SP7|121340|Sp7 transcription factor##BC101549|SP7|121340|Sp7 transcription factor##BC113613|SP7|121340|Sp7 transcription factor##AY150673|SP7|121340|Sp7 transcription factor##AF477981|SP7|121340|Sp7 transcription factor##NM_152860|SP7|121340|Sp7 transcription factor##AF466179|SP7|121340|Sp7 transcription factor##AK293342|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##BC000659|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##BC018836|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##AY237818|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##NM_001173466|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##NM_015665|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##BC062539|SP1|6667|Sp1 transcription factor##NM_001251825|SP1|6667|Sp1 transcription factor##NM_138473|SP1|6667|Sp1 transcription factor##AF255682|SP1|6667|Sp1 transcription factor##AJ272134|SP1|6667|Sp1 transcription factor##BC043224|SP1|6667|Sp1 transcription factor##NM_003109|SP1|6667|Sp1 transcription factor##NM_001164690|AMHR2|269|anti-Mullerian hormone receptor, type II##NM_001164691|AMHR2|269|anti-Mullerian hormone receptor, type II##NM_020547|AMHR2|269|anti-Mullerian hormone receptor, type II##AK313593|AMHR2|269|anti-Mullerian hormone receptor, type II##AF172932|AMHR2|269|anti-Mullerian hormone receptor, type II##BC126316|AMHR2|269|anti-Mullerian hormone receptor, type II##BC136356|AMHR2|269|anti-Mullerian hormone receptor, type II##AY714878|AMHR2|269|anti-Mullerian hormone receptor, type II##HQ258327|AMHR2|269|anti-Mullerian hormone receptor, type II	0.0	
chr16	80661032	80661104	reg1001642.p2	4.621	+	AF125108 NM_130897 BC054892 BC035232	-86180	+	AF055376 AF055377 BC038438 NM_001031804 NM_005360	-1026453	-	TSC_hg19_v1_chr16_+_78133580 NM_016373 NM_130791 NM_130844 AK298322 AF211943 AF395123 AF395124 AK027626 AK291300 AK290438 AF227527 AF227529 AF227528 AF227526 BC003184 AF187015 AY256821 AB590073 BT007445	-2527613	+	TSC_hg19_v1_chr16_-_80837998 AX781671 AX781675 AB590934 CU686816 BC100803 BC100804 BC100805 BC100806 BC069440 AX781670 AK096185 NM_152342 AY273798	176979	-	TSC_hg19_v1_chr16_+_81040102 AK023669 NM_001100624 NM_001100625 NM_018455	379016	+	TSC_hg19_v1_chr16_+_81040132 BC007334	379075	+	AF125108|DYNLRB2|83657|dynein, light chain, roadblock-type 2##NM_130897|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC054892|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC035232|DYNLRB2|83657|dynein, light chain, roadblock-type 2##AF055376|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AF055377|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##BC038438|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_001031804|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_005360|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_016373|WWOX|51741|WW domain containing oxidoreductase##NM_130791|WWOX|51741|WW domain containing oxidoreductase##NM_130844|WWOX|51741|WW domain containing oxidoreductase##AK298322|WWOX|51741|WW domain containing oxidoreductase##AF211943|WWOX|51741|WW domain containing oxidoreductase##AF395123|WWOX|51741|WW domain containing oxidoreductase##AF395124|WWOX|51741|WW domain containing oxidoreductase##AK027626|WWOX|51741|WW domain containing oxidoreductase##AK291300|WWOX|51741|WW domain containing oxidoreductase##AK290438|WWOX|51741|WW domain containing oxidoreductase##AF227527|WWOX|51741|WW domain containing oxidoreductase##AF227529|WWOX|51741|WW domain containing oxidoreductase##AF227528|WWOX|51741|WW domain containing oxidoreductase##AF227526|WWOX|51741|WW domain containing oxidoreductase##BC003184|WWOX|51741|WW domain containing oxidoreductase##AF187015|WWOX|51741|WW domain containing oxidoreductase##AY256821|WWOX|51741|WW domain containing oxidoreductase##BT007445|WWOX|51741|WW domain containing oxidoreductase##AX781671|CDYL2|124359|chromodomain protein, Y-like 2##BC100803|CDYL2|124359|chromodomain protein, Y-like 2##BC100804|CDYL2|124359|chromodomain protein, Y-like 2##BC100805|CDYL2|124359|chromodomain protein, Y-like 2##BC100806|CDYL2|124359|chromodomain protein, Y-like 2##BC069440|CDYL2|124359|chromodomain protein, Y-like 2##AX781670|CDYL2|124359|chromodomain protein, Y-like 2##AK096185|CDYL2|124359|chromodomain protein, Y-like 2##NM_152342|CDYL2|124359|chromodomain protein, Y-like 2##AY273798|CDYL2|124359|chromodomain protein, Y-like 2##AK023669|CENPN|55839|centromere protein N##NM_001100624|CENPN|55839|centromere protein N##NM_001100625|CENPN|55839|centromere protein N##NM_018455|CENPN|55839|centromere protein N##BC007334|CENPN|55839|centromere protein N	0.0	
chr8	946695	946776	reg1001177.p1	4.612	+	AK290264 TSC_hg19_v1_chr8_-_681225 BC046243 NM_207332	-265504	-	TSC_hg19_v1_chr8_-_681204 AK297476	-265524	-	TSC_hg19_v1_chr8_-_681182 EU832095 EU832187 AF161437	-265555	-	AF119818 AF119817 NM_004745	502814	+	NM_018941 TSC_hg19_v1_chr8_+_1711937 AK312486 AF123757 AF123758 AF123759 AF123760 AF123761	765175	+	TSC_hg19_v1_chr8_+_1712012 BC007725	765301	+	AK290264|ERICH1|157697|glutamate-rich 1##BC046243|ERICH1|157697|glutamate-rich 1##NM_207332|ERICH1|157697|glutamate-rich 1##AK297476|ERICH1|157697|glutamate-rich 1##EU832095|ERICH1|157697|glutamate-rich 1##EU832187|ERICH1|157697|glutamate-rich 1##AF161437|ERICH1|157697|glutamate-rich 1##AF119818|DLGAP2|9228|discs, large (Drosophila) homolog-associated protein 2##AF119817|DLGAP2|9228|discs, large (Drosophila) homolog-associated protein 2##NM_004745|DLGAP2|9228|discs, large (Drosophila) homolog-associated protein 2##NM_018941|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AK312486|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123757|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123758|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123759|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123760|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123761|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##BC007725|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)	0.0	
chr17	72869416	72869541	reg1000949.p1	4.606	+	BT006684 CU678312 AB463633 AK223530 J03826 AK098648 AK293210 AK301779 BC063493 BC002960 AK298908 AK094120 AK293208 BC018911 BC034763 BC011521 AK295307 NM_004110 NM_024417	-367	-	BC140801 BC144586 AB208799 NM_000835	-13533	-	AL137521 BC037584 TSC_hg19_v1_chr17_+_72832152	-37370	+	NM_178128 AY203929 BC117230 AK094411	20243	-	BC101096 BC101097 BC101098 BC101099 AK091243 AK296899 AX746872 NM_173477 AK289804	49821	-	AK000063 NM_178160	50891	+	BT006684|FDXR|2232|ferredoxin reductase##AK223530|FDXR|2232|ferredoxin reductase##J03826|FDXR|2232|ferredoxin reductase##AK098648|FDXR|2232|ferredoxin reductase##AK293210|FDXR|2232|ferredoxin reductase##AK301779|FDXR|2232|ferredoxin reductase##BC063493|FDXR|2232|ferredoxin reductase##BC002960|FDXR|2232|ferredoxin reductase##AK298908|FDXR|2232|ferredoxin reductase##AK094120|FDXR|2232|ferredoxin reductase##AK293208|FDXR|2232|ferredoxin reductase##BC018911|FDXR|2232|ferredoxin reductase##BC034763|FDXR|2232|ferredoxin reductase##BC011521|FDXR|2232|ferredoxin reductase##AK295307|FDXR|2232|ferredoxin reductase##NM_004110|FDXR|2232|ferredoxin reductase##NM_024417|FDXR|2232|ferredoxin reductase##BC140801|GRIN2C|2905|glutamate receptor, ionotropic, N-methyl D-aspartate 2C##BC144586|GRIN2C|2905|glutamate receptor, ionotropic, N-methyl D-aspartate 2C##AB208799|GRIN2C|2905|glutamate receptor, ionotropic, N-methyl D-aspartate 2C##NM_000835|GRIN2C|2905|glutamate receptor, ionotropic, N-methyl D-aspartate 2C##AL137521|TMEM104|54868|transmembrane protein 104##NM_178128|FADS6|283985|fatty acid desaturase domain family, member 6##AY203929|FADS6|283985|fatty acid desaturase domain family, member 6##BC117230|FADS6|283985|fatty acid desaturase domain family, member 6##AK094411|FADS6|283985|fatty acid desaturase domain family, member 6##BC101096|USH1G|124590|Usher syndrome 1G (autosomal recessive)##BC101097|USH1G|124590|Usher syndrome 1G (autosomal recessive)##BC101098|USH1G|124590|Usher syndrome 1G (autosomal recessive)##BC101099|USH1G|124590|Usher syndrome 1G (autosomal recessive)##AK091243|USH1G|124590|Usher syndrome 1G (autosomal recessive)##AK296899|USH1G|124590|Usher syndrome 1G (autosomal recessive)##NM_173477|USH1G|124590|Usher syndrome 1G (autosomal recessive)##AK289804|USH1G|124590|Usher syndrome 1G (autosomal recessive)##AK000063|OTOP2|92736|otopetrin 2##NM_178160|OTOP2|92736|otopetrin 2	0.78813	denovo_WM_21:70:0.671
chr4	156298068	156298194	reg1001497.p1	4.604	+	TSC_hg19_v1_chr4_-_156298108 AK024812 AY690636 NM_001039580	-20	-	TSC_hg19_v1_chr4_-_156297990 AK301075 BC146864 BC128540 BC128541 BC056683	-123	-	TSC_hg19_v1_chr4_-_156297959 BC022852	-176	-	NM_000856 NM_001130682 NM_001130686 NM_001130687 X66534 Y15723 AK312952 BC095395 TSC_hg19_v1_chr4_+_156587999 AK309950 AK096588 NM_001130683 NM_001130685 BX649180 AK226125 BX647200 BC012627	290044	+	TSC_hg19_v1_chr4_+_156588813 NM_001130684 BC028384	290686	+	NM_000857 TSC_hg19_v1_chr4_+_156680190 AK315944 AK300296 AK315199 AK296680 AK307838 BC026332 BC060835 BC047620 X66533 AF020340	382073	+	AK024812|MAP9|79884|microtubule-associated protein 9##AY690636|MAP9|79884|microtubule-associated protein 9##NM_001039580|MAP9|79884|microtubule-associated protein 9##AK301075|MAP9|79884|microtubule-associated protein 9##BC146864|MAP9|79884|microtubule-associated protein 9##BC128540|MAP9|79884|microtubule-associated protein 9##BC128541|MAP9|79884|microtubule-associated protein 9##BC056683|MAP9|79884|microtubule-associated protein 9##BC022852|MAP9|79884|microtubule-associated protein 9##NM_000856|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130682|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130686|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130687|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##X66534|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##Y15723|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##AK312952|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BC095395|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##AK309950|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##AK096588|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130683|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130685|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BX649180|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##AK226125|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BX647200|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BC012627|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130684|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BC028384|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_000857|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK315944|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK300296|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK315199|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK296680|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK307838|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##BC026332|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##BC060835|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##BC047620|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##X66533|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AF020340|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3	0.044074	
chr17	7307456	7307587	reg1001135.p1	4.601	+	AK290117 TSC_hg19_v1_chr17_-_7307417 AK055822 BC030270 NM_152766	-87	-	BC014989 NM_001201576 NM_020360	-9361	-	AK124006 AF289602 BC028080 TSC_hg19_v1_chr17_-_7297842 AK098229 AK075188 AK314643 BC093026 AF159442	-9664	-	AF376802 NM_020795	3980	+	AK097400 BC033882 NM_199339 CU689788	16151	+	BC031286 BC048010 NM_175734 BC044816	21425	+	AK290117|C17orf61-PLSCR3|100529211|C17orf61-PLSCR3 readthrough##AK055822|C17orf61-PLSCR3|100529211|C17orf61-PLSCR3 readthrough##BC030270|C17orf61|254863|chromosome 17 open reading frame 61##NM_152766|C17orf61|254863|chromosome 17 open reading frame 61##NM_001201576|PLSCR3|57048|phospholipid scramblase 3##NM_020360|PLSCR3|57048|phospholipid scramblase 3##AK124006|PLSCR3|57048|phospholipid scramblase 3##AF289602|PLSCR3|57048|phospholipid scramblase 3##BC028080|PLSCR3|57048|phospholipid scramblase 3##AK098229|PLSCR3|57048|phospholipid scramblase 3##AK075188|PLSCR3|57048|phospholipid scramblase 3##AK314643|PLSCR3|57048|phospholipid scramblase 3##BC093026|PLSCR3|57048|phospholipid scramblase 3##AF159442|PLSCR3|57048|phospholipid scramblase 3##AF376802|NLGN2|57555|neuroligin 2##NM_020795|NLGN2|57555|neuroligin 2##AK097400|SPEM1|374768|spermatid maturation 1##BC033882|SPEM1|374768|spermatid maturation 1##NM_199339|SPEM1|374768|spermatid maturation 1##BC031286|C17orf74|201243|chromosome 17 open reading frame 74##BC048010|C17orf74|201243|chromosome 17 open reading frame 74##NM_175734|C17orf74|201243|chromosome 17 open reading frame 74##BC044816|C17orf74|201243|chromosome 17 open reading frame 74	0.028438	
chrX	22210931	22211010	reg1001178.p2	4.600	+	NM_000444 U87284 AD000712 AK298030 BC105057 BC105059 U75645 U60475	-159945	+	NM_004595 TSC_hg19_v1_chrX_+_21958824 AD001528 AK293455 AK313834 BC009898 BC085621 EU176347	-252144	+	AK091850 NM_206923	-336866	+	GQ355336 NM_152577 AK098601 BC074910 BC126190 BC126192 HQ258412 HQ258552	80098	+	AY039237 NM_182699 BC067878 BC051703	807114	+	AK298796 NM_173495 AK054858 BC121061	1142090	+	NM_000444|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##U87284|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##AD000712|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##AK298030|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##BC105057|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##BC105059|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##U75645|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##U60475|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##NM_004595|SMS|6611|spermine synthase##AD001528|SMS|6611|spermine synthase##AK293455|SMS|6611|spermine synthase##AK313834|SMS|6611|spermine synthase##BC009898|SMS|6611|spermine synthase##BC085621|SMS|6611|spermine synthase##EU176347|SMS|6611|spermine synthase##AK091850|YY2|404281|YY2 transcription factor##NM_206923|YY2|404281|YY2 transcription factor##GQ355336|ZNF645|158506|zinc finger protein 645##NM_152577|ZNF645|158506|zinc finger protein 645##AK098601|ZNF645|158506|zinc finger protein 645##BC074910|ZNF645|158506|zinc finger protein 645##BC126190|ZNF645|158506|zinc finger protein 645##BC126192|ZNF645|158506|zinc finger protein 645##HQ258412|ZNF645|158506|zinc finger protein 645##HQ258552|ZNF645|158506|zinc finger protein 645##AY039237|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##NM_182699|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##BC067878|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##BC051703|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##AK298796|PTCHD1|139411|patched domain containing 1##NM_173495|PTCHD1|139411|patched domain containing 1##AK054858|PTCHD1|139411|patched domain containing 1##BC121061|PTCHD1|139411|patched domain containing 1	0.0	
chr12	38098904	38099017	reg1001093.p2	4.599	+	TSC_hg19_v1_chr12_+_34175430 BC070347 BC033730 BC090948 AK292488 BC075807 DQ892056 DQ895250	-3923487	+	TSC_hg19_v1_chr12_+_34175402 BC022336	-3923574	+	AJ312278 NM_032834	-3923745	+	NM_001013620 TSC_hg19_v1_chr12_+_38710583 AK307955 BC137413 BC137414 BC144617 AY845858	611665	+	AB527319 AM392913 AY177785 BC048260 BC068040 AK307908 TSC_hg19_v1_chr12_-_39299394 BC110577 BC110578 NM_153634 BX538055	1200423	-	AB051495 AM177179 AB384627 AY368076 BC136414 BC041430 AF155117 AF450487 TSC_hg19_v1_chr12_-_39836923 AK000059 AB290166 NM_001173463 NM_001173464 NM_001173465 NM_017641	1738039	-	BC070347|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC033730|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC090948|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AK292488|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC075807|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ892056|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ895250|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC022336|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AJ312278|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##NM_032834|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##NM_001013620|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AK307955|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137413|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137414|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AY845858|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AM392913|CPNE8|144402|copine VIII##AY177785|CPNE8|144402|copine VIII##BC048260|CPNE8|144402|copine VIII##BC068040|CPNE8|144402|copine VIII##AK307908|CPNE8|144402|copine VIII##BC110577|CPNE8|144402|copine VIII##BC110578|CPNE8|144402|copine VIII##NM_153634|CPNE8|144402|copine VIII##BX538055|CPNE8|144402|copine VIII##AB051495|KIF21A|55605|kinesin family member 21A##AM177179|KIF21A|55605|kinesin family member 21A##AY368076|KIF21A|55605|kinesin family member 21A##BC136414|KIF21A|55605|kinesin family member 21A##BC041430|KIF21A|55605|kinesin family member 21A##AF155117|KIF21A|55605|kinesin family member 21A##AF450487|KIF21A|55605|kinesin family member 21A##AK000059|KIF21A|55605|kinesin family member 21A##AB290166|KIF21A|55605|kinesin family member 21A##NM_001173463|KIF21A|55605|kinesin family member 21A##NM_001173464|KIF21A|55605|kinesin family member 21A##NM_001173465|KIF21A|55605|kinesin family member 21A##NM_017641|KIF21A|55605|kinesin family member 21A	0.0	
chr1	1624856	1624927	reg1001052.p2	4.598	+	AB007916 TSC_hg19_v1_chr1_-_1624212 NM_001110781	-674	-	BC092507 TSC_hg19_v1_chr1_-_1624149 AK125619	-733	-	TSC_hg19_v1_chr1_-_1623947 CR936618 BC062371	-926	-	TSC_hg19_v1_chr1_-_1655767 AK303446 AF067518 AF067519 AF067520 AF067521 AF067522 AF067523 AK301495 AK304679 BC009375 AF067512 AF067513 AF067514 AF067515 AF067516 AF067517 AK303451 NM_033486 NM_033487 NM_033488 NM_033489 NM_033492 NM_033493 U04816 U04817 U04818 U04824 U07704 U07705 NM_024011 NM_033529	30885	-	AL049665 NM_001199787 NM_182838 TSC_hg19_v1_chr1_-_1677454 BC110653	52570	-	AK296722 NM_001198995	65189	-	AB007916|SLC35E2B|728661|solute carrier family 35, member E2B##NM_001110781|SLC35E2B|728661|solute carrier family 35, member E2B##BC092507|SLC35E2B|728661|solute carrier family 35, member E2B##AK125619|SLC35E2B|728661|solute carrier family 35, member E2B##CR936618|SLC35E2B|728661|solute carrier family 35, member E2B##BC062371|SLC35E2|9906|solute carrier family 35, member E2##AK303446|CDK11B|984|cyclin-dependent kinase 11B##AF067518|CDK11A|728642|cyclin-dependent kinase 11A##AF067519|CDK11A|728642|cyclin-dependent kinase 11A##AF067520|CDK11A|728642|cyclin-dependent kinase 11A##AF067521|CDK11A|728642|cyclin-dependent kinase 11A##AF067522|CDK11A|728642|cyclin-dependent kinase 11A##AF067523|CDK11A|728642|cyclin-dependent kinase 11A##AK301495|CDK11B|984|cyclin-dependent kinase 11B##AK304679|CDK11B|984|cyclin-dependent kinase 11B##BC009375|CDK11B|984|cyclin-dependent kinase 11B##AF067512|CDK11B|984|cyclin-dependent kinase 11B##AF067513|CDK11B|984|cyclin-dependent kinase 11B##AF067514|CDK11B|984|cyclin-dependent kinase 11B##AF067515|CDK11B|984|cyclin-dependent kinase 11B##AF067516|CDK11B|984|cyclin-dependent kinase 11B##AF067517|CDK11B|984|cyclin-dependent kinase 11B##AK303451|CDK11B|984|cyclin-dependent kinase 11B##NM_033486|CDK11B|984|cyclin-dependent kinase 11B##NM_033487|CDK11B|984|cyclin-dependent kinase 11B##NM_033488|CDK11B|984|cyclin-dependent kinase 11B##NM_033489|CDK11B|984|cyclin-dependent kinase 11B##NM_033492|CDK11B|984|cyclin-dependent kinase 11B##NM_033493|CDK11B|984|cyclin-dependent kinase 11B##U04816|CDK11B|984|cyclin-dependent kinase 11B##U04817|CDK11B|984|cyclin-dependent kinase 11B##U04818|CDK11B|984|cyclin-dependent kinase 11B##U04824|CDK11B|984|cyclin-dependent kinase 11B##U07704|CDK11A|728642|cyclin-dependent kinase 11A##U07705|CDK11A|728642|cyclin-dependent kinase 11A##NM_024011|CDK11A|728642|cyclin-dependent kinase 11A##NM_033529|CDK11A|728642|cyclin-dependent kinase 11A##AL049665|SLC35E2|9906|solute carrier family 35, member E2##NM_001199787|SLC35E2|9906|solute carrier family 35, member E2##NM_182838|SLC35E2|9906|solute carrier family 35, member E2##BC110653|SLC35E2B|728661|solute carrier family 35, member E2B##AK296722|NADK|65220|NAD kinase##NM_001198995|NADK|65220|NAD kinase	0.96556	denovo_WM_21:30:0.966
chr11	58825959	58826077	reg1001723.p1	4.597	+	AK091965 AX747281 DQ084381 NM_001220496 NM_080661 AK055818	-115266	+	NM_001220494 AK300479 BC008353	-130881	+	BC021682 NM_145016 BC016789	-214030	-	TSC_hg19_v1_chr11_+_58874641 BC062456 NM_001142703 NM_001142704 NM_198947 BC005998 AK304258 AY457926 AK303520	48644	+	TSC_hg19_v1_chr11_-_58910222 AK124475 BC028022	84225	-	TSC_hg19_v1_chr11_+_58910331 AK092237 AX747422 NM_001142519 NM_001142520 NM_001142521	84292	+	AK091965|GLYATL1|92292|glycine-N-acyltransferase-like 1##DQ084381|GLYATL1|92292|glycine-N-acyltransferase-like 1##NM_001220496|GLYATL1|92292|glycine-N-acyltransferase-like 1##NM_080661|GLYATL1|92292|glycine-N-acyltransferase-like 1##AK055818|GLYATL1|92292|glycine-N-acyltransferase-like 1##NM_001220494|GLYATL1|92292|glycine-N-acyltransferase-like 1##AK300479|GLYATL1|92292|glycine-N-acyltransferase-like 1##BC008353|GLYATL1|92292|glycine-N-acyltransferase-like 1##BC021682|GLYATL2|219970|glycine-N-acyltransferase-like 2##NM_145016|GLYATL2|219970|glycine-N-acyltransferase-like 2##BC016789|GLYATL2|219970|glycine-N-acyltransferase-like 2##BC062456|FAM111B|374393|family with sequence similarity 111, member B##NM_001142703|FAM111B|374393|family with sequence similarity 111, member B##NM_001142704|FAM111B|374393|family with sequence similarity 111, member B##NM_198947|FAM111B|374393|family with sequence similarity 111, member B##BC005998|FAM111B|374393|family with sequence similarity 111, member B##AK304258|FAM111B|374393|family with sequence similarity 111, member B##AY457926|FAM111B|374393|family with sequence similarity 111, member B##AK303520|FAM111B|374393|family with sequence similarity 111, member B##AK092237|FAM111A|63901|family with sequence similarity 111, member A##NM_001142519|FAM111A|63901|family with sequence similarity 111, member A##NM_001142520|FAM111A|63901|family with sequence similarity 111, member A##NM_001142521|FAM111A|63901|family with sequence similarity 111, member A	0.242521	denovo_WM_21:-36:0.243
chr11	50409543	50409643	reg1001066.p1	4.593	+	BC136850 BC136851 NM_001005270	-405523	-	BC137005 NM_001001955	-435651	+	TSC_hg19_v1_chr11_-_49230053 DQ088979 AF176574 BC025672 AK312366 AK295368 AK295470 AK300532 M99487 NM_001014986 NM_001193471 NM_001193472 NM_001193473 NM_004476 S76978	-1179486	-	BC140750 NM_001005272	1002854	-	NM_001004703	1105688	+	AF521869 BC001862 NM_024114	4620064	+	BC136850|OR4C12|283093|olfactory receptor, family 4, subfamily C, member 12##BC136851|OR4C12|283093|olfactory receptor, family 4, subfamily C, member 12##NM_001005270|OR4C12|283093|olfactory receptor, family 4, subfamily C, member 12##BC137005|OR4C13|283092|olfactory receptor, family 4, subfamily C, member 13##NM_001001955|OR4C13|283092|olfactory receptor, family 4, subfamily C, member 13##DQ088979|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AF176574|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##BC025672|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AK312366|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AK295368|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AK295470|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AK300532|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##M99487|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_001014986|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_001193471|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_001193472|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_001193473|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_004476|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##S76978|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##BC140750|OR4A5|81318|olfactory receptor, family 4, subfamily A, member 5##NM_001005272|OR4A5|81318|olfactory receptor, family 4, subfamily A, member 5##NM_001004703|OR4C46|119749|olfactory receptor, family 4, subfamily C, member 46##AF521869|TRIM48|79097|tripartite motif containing 48##BC001862|TRIM48|79097|tripartite motif containing 48##NM_024114|TRIM48|79097|tripartite motif containing 48	0.0	
chr3	183262635	183262762	reg1001609.p2	4.591	+	TSC_hg19_v1_chr3_+_183165436 AK057000	-97268	+	NM_015078 BC064632 AK124500 AK310962	-116759	-	TSC_hg19_v1_chr3_+_182971608 AK091474 AX747008	-291092	+	AF441792 CU689348 DQ894788 EU176275 TSC_hg19_v1_chr3_-_183273495 AK097125 AK314473 BX648370 BC032348 NM_130446	10754	-	BC142993 TSC_hg19_v1_chr3_+_183353410 AK026326 AY422472 BX648466 BX648812 NM_017644	90702	+	TSC_hg19_v1_chr3_+_183415597 AB033023 BC150273 NM_018023	152924	+	AK057000|LOC100505687|100505687|uncharacterized LOC100505687##NM_015078|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##BC064632|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK124500|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK310962|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK091474|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5##AF441792|KLHL6|89857|kelch-like 6 (Drosophila)##DQ894788|KLHL6|89857|kelch-like 6 (Drosophila)##EU176275|KLHL6|89857|kelch-like 6 (Drosophila)##AK097125|KLHL6|89857|kelch-like 6 (Drosophila)##AK314473|KLHL6|89857|kelch-like 6 (Drosophila)##BX648370|KLHL6|89857|kelch-like 6 (Drosophila)##BC032348|KLHL6|89857|kelch-like 6 (Drosophila)##NM_130446|KLHL6|89857|kelch-like 6 (Drosophila)##BC142993|KLHL24|54800|kelch-like 24 (Drosophila)##AK026326|KLHL24|54800|kelch-like 24 (Drosophila)##AY422472|KLHL24|54800|kelch-like 24 (Drosophila)##BX648466|KLHL24|54800|kelch-like 24 (Drosophila)##BX648812|KLHL24|54800|kelch-like 24 (Drosophila)##NM_017644|KLHL24|54800|kelch-like 24 (Drosophila)##AB033023|YEATS2|55689|YEATS domain containing 2##BC150273|YEATS2|55689|YEATS domain containing 2##NM_018023|YEATS2|55689|YEATS domain containing 2	2.133937	denovo_WM_21:4:0.994	denovo_WM_21:-33:0.312	denovo_WM_21:97:0.828
chr1	227751153	227751262	reg1001239.p1	4.586	+	TSC_hg19_v1_chr1_-_227506194 NM_003607 NM_014826 U59305	-245157	-	TSC_hg19_v1_chr1_+_227128004 AB073905	-623183	+	TSC_hg19_v1_chr1_+_227127998 AK074693 AK092784 AK126200 AK293571 AK297735 AX747728 AK090494 AK301012 AX746479	-623212	+	TSC_hg19_v1_chr1_+_227751254 NM_178549 AK026475 AK307248 BC042500	31	+	AK311313 TSC_hg19_v1_chr1_+_227751265	74	+	AK055266 AK093736 BC032775 TSC_hg19_v1_chr1_+_227916386	165110	+	NM_003607|CDC42BPA|8476|CDC42 binding protein kinase alpha (DMPK-like)##NM_014826|CDC42BPA|8476|CDC42 binding protein kinase alpha (DMPK-like)##U59305|CDC42BPA|8476|CDC42 binding protein kinase alpha (DMPK-like)##AB073905|ADCK3|56997|aarF domain containing kinase 3##AK074693|ADCK3|56997|aarF domain containing kinase 3##AK092784|ADCK3|56997|aarF domain containing kinase 3##AK126200|ADCK3|56997|aarF domain containing kinase 3##AK293571|ADCK3|56997|aarF domain containing kinase 3##AK297735|ADCK3|56997|aarF domain containing kinase 3##AK090494|ADCK3|56997|aarF domain containing kinase 3##AK301012|ADCK3|56997|aarF domain containing kinase 3##NM_178549|ZNF678|339500|zinc finger protein 678##AK026475|ZNF678|339500|zinc finger protein 678##AK307248|ZNF678|339500|zinc finger protein 678##BC042500|ZNF678|339500|zinc finger protein 678##AK311313|ZNF678|339500|zinc finger protein 678##AK055266|LOC100130093|100130093|uncharacterized LOC100130093##AK093736|LOC100130093|100130093|uncharacterized LOC100130093	1.441382	denovo_WM_21:0:0.705	denovo_WM_21:-29:0.737
chr7	75947399	75947529	reg1001420.p1	4.579	+	TSC_hg19_v1_chr7_+_75933019 S74571	-14410	+	TSC_hg19_v1_chr7_+_75932877 AK311446	-14554	+	AK311894 TSC_hg19_v1_chr7_+_75931991 BC012768 BC073768 AB020027 AL050380 DQ891304 DQ893349 DQ894489 DQ896669 AB528488 BT019888 CR407614 CR536489 BC014920	-15434	+	AB384983 AF142498 CR541904 CR541925 CU676788 TSC_hg19_v1_chr7_-_75988268	40734	-	AK295029 TSC_hg19_v1_chr7_-_75988309 AB024334 AK024230 AK293505	40829	-	BC020963 TSC_hg19_v1_chr7_-_75988335 NM_012479	40866	-	S74571|HSPB1|3315|heat shock 27kDa protein 1##AK311446|HSPB1|3315|heat shock 27kDa protein 1##AK311894|HSPB1|3315|heat shock 27kDa protein 1##BC012768|HSPB1|3315|heat shock 27kDa protein 1##BC073768|HSPB1|3315|heat shock 27kDa protein 1##AB020027|HSPB1|3315|heat shock 27kDa protein 1##AL050380|HSPB1|3315|heat shock 27kDa protein 1##DQ891304|HSPB1|3315|heat shock 27kDa protein 1##DQ893349|HSPB1|3315|heat shock 27kDa protein 1##DQ894489|HSPB1|3315|heat shock 27kDa protein 1##DQ896669|HSPB1|3315|heat shock 27kDa protein 1##BT019888|HSPB1|3315|heat shock 27kDa protein 1##CR407614|HSPB1|3315|heat shock 27kDa protein 1##CR536489|HSPB1|3315|heat shock 27kDa protein 1##BC014920|HSPB1|3315|heat shock 27kDa protein 1##AF142498|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##CR541904|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##CR541925|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##AK295029|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##AB024334|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##AK024230|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##AK293505|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##BC020963|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##NM_012479|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	0.952274	denovo_WM_21:21:0.952
chr19	12476488	12476631	reg1001159.p1	4.577	+	AK024418 AK295923 NM_030824	-99	-	AK313755 BC022523 AK092116 AX747362 NM_145276	-32075	-	TSC_hg19_v1_chr19_-_12405615 BC136502 AK297528 BC032246 AB021642 BC001868 NM_001164276 NM_016264	-70907	-	TSC_hg19_v1_chr19_-_12512035 BC057831 NM_001080821	35495	-	AK299532 TSC_hg19_v1_chr19_-_12551771	75207	-	AK023025 BC032753 TSC_hg19_v1_chr19_-_12551836 AB011414 NM_005815	75307	-	AK024418|ZNF442|79973|zinc finger protein 442##AK295923|ZNF442|79973|zinc finger protein 442##NM_030824|ZNF442|79973|zinc finger protein 442##AK313755|ZNF563|147837|zinc finger protein 563##BC022523|ZNF563|147837|zinc finger protein 563##AK092116|ZNF563|147837|zinc finger protein 563##NM_145276|ZNF563|147837|zinc finger protein 563##BC136502|ZNF44|51710|zinc finger protein 44##AK297528|ZNF44|51710|zinc finger protein 44##BC032246|ZNF44|51710|zinc finger protein 44##AB021642|ZNF44|51710|zinc finger protein 44##BC001868|ZNF44|51710|zinc finger protein 44##NM_001164276|ZNF44|51710|zinc finger protein 44##NM_016264|ZNF44|51710|zinc finger protein 44##NM_001080821|ZNF799|90576|zinc finger protein 799##AK299532|ZNF443|10224|zinc finger protein 443##AK023025|ZNF443|10224|zinc finger protein 443##BC032753|ZNF443|10224|zinc finger protein 443##AB011414|ZNF443|10224|zinc finger protein 443##NM_005815|ZNF443|10224|zinc finger protein 443	0.027326	
chr7	66093761	66093860	reg1000975.p2	4.574	+	TSC_hg19_v1_chr7_-_66057374 BC080520 BC057835 BC067867 AK310548 BC103766 AK310370 AK296922	-36449	-	TSC_hg19_v1_chr7_+_65958724 AY726579	-135107	+	TSC_hg19_v1_chr7_+_65670320 NM_003596 AK307053 AK313098	-423501	+	TSC_hg19_v1_chr7_+_66093867 NM_001167961 NM_153033	64	+	BC042482 TSC_hg19_v1_chr7_+_66093944 AK056631 AK127790	132	+	TSC_hg19_v1_chr7_+_66147121 AK056864	53330	+	AK310548|LOC493754|493754|RAB guanine nucleotide exchange factor (GEF) 1 pseudogene##BC103766|LOC493754|493754|RAB guanine nucleotide exchange factor (GEF) 1 pseudogene##AK310370|LOC493754|493754|RAB guanine nucleotide exchange factor (GEF) 1 pseudogene##AK296922|LOC493754|493754|RAB guanine nucleotide exchange factor (GEF) 1 pseudogene##NM_003596|TPST1|8460|tyrosylprotein sulfotransferase 1##AK307053|TPST1|8460|tyrosylprotein sulfotransferase 1##AK313098|TPST1|8460|tyrosylprotein sulfotransferase 1##NM_001167961|KCTD7|154881|potassium channel tetramerisation domain containing 7##NM_153033|KCTD7|154881|potassium channel tetramerisation domain containing 7##BC042482|KCTD7|154881|potassium channel tetramerisation domain containing 7##AK056631|KCTD7|154881|potassium channel tetramerisation domain containing 7##AK056864|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1	0.754936	denovo_WM_21:-112:0.699
chrUn_gl000222	84287	84433	reg1000951.p2	4.568	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.0	
chr16	46723155	46723303	reg1000432.p1	4.567	+	TSC_hg19_v1_chr16_-_46723112 NM_018206	-102	-	BC041367 BC010362 AK223218 AF191298 TSC_hg19_v1_chr16_-_46723091 AK001614 AF175265 AF186382 BC093036 AL136888	-167	-	TSC_hg19_v1_chr16_-_46655304 NM_024745	-67923	-	BC050725 NM_014321 AK024019 TSC_hg19_v1_chr16_+_46723570 AK024077	336	+	AF139658 TSC_hg19_v1_chr16_+_46723600 BC039032 BC063565 AK310633 AK021946 AB528212 AM392646 AM392910 AM393245 AM393680 AM393794 CU687764	368	+	AB451455 BC109096 BC109097 AJ247087 NM_182493	58933	-	NM_018206|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##BC041367|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##BC010362|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AK223218|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF191298|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AK001614|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF175265|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF186382|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##BC093036|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AL136888|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##NM_024745|SHCBP1|79801|SHC SH2-domain binding protein 1##BC050725|ORC6|23594|origin recognition complex, subunit 6##NM_014321|ORC6|23594|origin recognition complex, subunit 6##AK024019|ORC6|23594|origin recognition complex, subunit 6##AK024077|ORC6|23594|origin recognition complex, subunit 6##AF139658|ORC6|23594|origin recognition complex, subunit 6##BC039032|ORC6|23594|origin recognition complex, subunit 6##BC063565|ORC6|23594|origin recognition complex, subunit 6##AK310633|ORC6|23594|origin recognition complex, subunit 6##AK021946|ORC6|23594|origin recognition complex, subunit 6##AM392646|ORC6|23594|origin recognition complex, subunit 6##AM392910|ORC6|23594|origin recognition complex, subunit 6##AM393245|PPA2|27068|pyrophosphatase (inorganic) 2##AM393680|ORC6|23594|origin recognition complex, subunit 6##AM393794|PPA2|27068|pyrophosphatase (inorganic) 2##AB451455|MYLK3|91807|myosin light chain kinase 3##BC109096|MYLK3|91807|myosin light chain kinase 3##BC109097|MYLK3|91807|myosin light chain kinase 3##AJ247087|MYLK3|91807|myosin light chain kinase 3##NM_182493|MYLK3|91807|myosin light chain kinase 3	1.244194	denovo_WM_21:-14:0.851	denovo_WM_21:-51:0.393
chrX	87117540	87117620	reg1001959.p1	4.567	+	NM_019117 NM_057162 AK056457 AB051474 BC161675 AL832514 AF284765 AF284766 BC140839 BC140840 BC142652 BC146677 AB385497	-344775	+	AK055953 AK298787 NM_001139515	-1599610	+	AK091842 AX747214 TSC_hg19_v1_chrX_+_85403461	-1714115	+	NM_001184771 NM_033048 AK098646 AK313768 BC027614	884660	+	BC117398 BC117400 NM_138960 BC101144 BC101145 AF497480 BC029920 AB464725 HQ258115	2059431	+	NM_080832	3572016	+	NM_019117|KLHL4|56062|kelch-like 4 (Drosophila)##NM_057162|KLHL4|56062|kelch-like 4 (Drosophila)##AK056457|KLHL4|56062|kelch-like 4 (Drosophila)##AB051474|KLHL4|56062|kelch-like 4 (Drosophila)##BC161675|KLHL4|56062|kelch-like 4 (Drosophila)##AL832514|KLHL4|56062|kelch-like 4 (Drosophila)##AF284765|KLHL4|56062|kelch-like 4 (Drosophila)##AF284766|KLHL4|56062|kelch-like 4 (Drosophila)##BC140839|KLHL4|56062|kelch-like 4 (Drosophila)##BC140840|KLHL4|56062|kelch-like 4 (Drosophila)##BC142652|KLHL4|56062|kelch-like 4 (Drosophila)##BC146677|KLHL4|56062|kelch-like 4 (Drosophila)##AK055953|DACH2|117154|dachshund homolog 2 (Drosophila)##AK298787|DACH2|117154|dachshund homolog 2 (Drosophila)##NM_001139515|DACH2|117154|dachshund homolog 2 (Drosophila)##AK091842|DACH2|117154|dachshund homolog 2 (Drosophila)##NM_001184771|CPXCR1|53336|CPX chromosome region, candidate 1##NM_033048|CPXCR1|53336|CPX chromosome region, candidate 1##AK098646|CPXCR1|53336|CPX chromosome region, candidate 1##AK313768|CPXCR1|53336|CPX chromosome region, candidate 1##BC027614|CPXCR1|53336|CPX chromosome region, candidate 1##BC117398|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC117400|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##NM_138960|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC101144|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC101145|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##AF497480|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC029920|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##HQ258115|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##NM_080832|PABPC5|140886|poly(A) binding protein, cytoplasmic 5	0.141869	
chr19	41221013	41221118	reg1001189.p1	4.566	+	TSC_hg19_v1_chr19_-_41220999 NM_001142555	-50	-	BC027473 TSC_hg19_v1_chr19_-_41220989	-82	-	BC016160 BC144583 TSC_hg19_v1_chr19_-_41196558 AK289398 NM_004756	-24572	-	TSC_hg19_v1_chr19_-_41222801 AK022291 NM_024876	1741	-	TSC_hg19_v1_chr19_+_41223016 BC060788 NM_025194 AJ290975	2026	+	TSC_hg19_v1_chr19_+_41223285 D38169	2226	+	NM_001142555|ADCK4|79934|aarF domain containing kinase 4##BC027473|ADCK4|79934|aarF domain containing kinase 4##BC016160|NUMBL|9253|numb homolog (Drosophila)-like##BC144583|NUMBL|9253|numb homolog (Drosophila)-like##AK289398|NUMBL|9253|numb homolog (Drosophila)-like##NM_004756|NUMBL|9253|numb homolog (Drosophila)-like##AK022291|ADCK4|79934|aarF domain containing kinase 4##NM_024876|ADCK4|79934|aarF domain containing kinase 4##BC060788|ITPKC|80271|inositol-trisphosphate 3-kinase C##NM_025194|ITPKC|80271|inositol-trisphosphate 3-kinase C##AJ290975|ITPKC|80271|inositol-trisphosphate 3-kinase C##D38169|ITPKC|80271|inositol-trisphosphate 3-kinase C	0.012841	
chr21	22161799	22161873	reg1001638.p1	4.566	+	BC111749 NM_002772 U09860	-2385871	-	AK296009 NM_001204174	-2543645	+	TSC_hg19_v1_chr21_+_19617149 AF257472 NM_024944 AY358608 BC009418	-2544674	+	TSC_hg19_v1_chr21_+_22370656 BC052946 NM_004540	208806	+	TSC_hg19_v1_chr21_+_22370694 AK299054	208854	+	TSC_hg19_v1_chr21_+_22370726 BC036088 U75330	208937	+	BC111749|TMPRSS15|5651|transmembrane protease, serine 15##NM_002772|TMPRSS15|5651|transmembrane protease, serine 15##U09860|TMPRSS15|5651|transmembrane protease, serine 15##AK296009|CHODL|140578|chondrolectin##NM_001204174|CHODL|140578|chondrolectin##AF257472|CHODL|140578|chondrolectin##NM_024944|CHODL|140578|chondrolectin##AY358608|CHODL|140578|chondrolectin##BC009418|CHODL|140578|chondrolectin##BC052946|NCAM2|4685|neural cell adhesion molecule 2##NM_004540|NCAM2|4685|neural cell adhesion molecule 2##AK299054|NCAM2|4685|neural cell adhesion molecule 2##BC036088|NCAM2|4685|neural cell adhesion molecule 2##U75330|NCAM2|4685|neural cell adhesion molecule 2	0.0	
chr20	32308274	32308414	reg1000067.p2	4.564	+	TSC_hg19_v1_chr20_-_32308117 CR533471 CU674580 EU832287 EU832372 BC001147 AK023879 AF072864 AL136648 AK301532 AK316589 AK297018 NM_007238 NM_183397	-330	-	TSC_hg19_v1_chr20_-_32274190 BC065188 S49592 M96577 BC050369 NM_005225	-34147	-	AB590894 TSC_hg19_v1_chr20_-_32274123 BC058902	-34234	-	BC132873 BC144188 BC157823 BC146811 BC094738 NM_032819 BC063492 BC040440 AB587355 HQ258664	11452	+	TSC_hg19_v1_chr20_+_32399127 NM_176812	90742	+	TSC_hg19_v1_chr20_+_32399155 AB100261 BC033859 AY726594 AY329085	90876	+	CR533471|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##EU832287|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##EU832372|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##BC001147|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK023879|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AF072864|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AL136648|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK301532|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK316589|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK297018|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##NM_007238|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##NM_183397|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##S49592|E2F1|1869|E2F transcription factor 1##M96577|E2F1|1869|E2F transcription factor 1##BC050369|E2F1|1869|E2F transcription factor 1##NM_005225|E2F1|1869|E2F transcription factor 1##BC058902|E2F1|1869|E2F transcription factor 1##BC132873|ZNF341|84905|zinc finger protein 341##BC144188|ZNF341|84905|zinc finger protein 341##BC157823|ZNF341|84905|zinc finger protein 341##BC146811|ZNF341|84905|zinc finger protein 341##BC094738|ZNF341|84905|zinc finger protein 341##NM_032819|ZNF341|84905|zinc finger protein 341##BC063492|ZNF341|84905|zinc finger protein 341##BC040440|ZNF341|84905|zinc finger protein 341##HQ258664|ZNF341|84905|zinc finger protein 341##NM_176812|CHMP4B|128866|charged multivesicular body protein 4B##AB100261|CHMP4B|128866|charged multivesicular body protein 4B##BC033859|CHMP4B|128866|charged multivesicular body protein 4B##AY726594|CHMP4B|128866|charged multivesicular body protein 4B##AY329085|CHMP4B|128866|charged multivesicular body protein 4B	1.904404	denovo_WM_21:-56:0.952
chr2	120399419	120399560	reg1001213.p1	4.560	+	AK293665 NM_001029996 TSC_hg19_v1_chr2_+_120302024 BC036530 AK304416	-97447	+	TSC_hg19_v1_chr2_-_120282060 BC035757	-117426	-	TSC_hg19_v1_chr2_-_120282018 AK314638 NM_002980	-117470	-	TSC_hg19_v1_chr2_+_120436745 AK130088 NM_001105198 NM_001105199 NM_030577 AK096890 AK299078 BC004404	37245	+	TSC_hg19_v1_chr2_+_120436776 AK057313 AK308503 AK311734	37292	+	M68941 NM_002830 TSC_hg19_v1_chr2_+_120517497 AK314836 BC010674	117911	+	AK293665|PCDP1|200373|primary ciliary dyskinesia protein 1##NM_001029996|PCDP1|200373|primary ciliary dyskinesia protein 1##BC036530|PCDP1|200373|primary ciliary dyskinesia protein 1##AK304416|PCDP1|200373|primary ciliary dyskinesia protein 1##BC035757|SCTR|6344|secretin receptor##AK314638|SCTR|6344|secretin receptor##NM_002980|SCTR|6344|secretin receptor##AK130088|TMEM177|80775|transmembrane protein 177##NM_001105198|TMEM177|80775|transmembrane protein 177##NM_001105199|TMEM177|80775|transmembrane protein 177##NM_030577|TMEM177|80775|transmembrane protein 177##AK096890|TMEM177|80775|transmembrane protein 177##AK299078|TMEM177|80775|transmembrane protein 177##BC004404|TMEM177|80775|transmembrane protein 177##AK057313|LOC100125918|100125918|uncharacterized LOC100125918##AK308503|TMEM177|80775|transmembrane protein 177##M68941|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##NM_002830|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##AK314836|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##BC010674|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)	0.0	
chr2	90482164	90482274	reg1000845.p2	4.560	+	TSC_hg19_v1_chr2_+_90211706 Z69013	-270501	+	TSC_hg19_v1_chr2_+_90077732 AJ131061	-404465	+	Z27171 L06158 AF490907 X72480 AF490924 X72424 X72441 X72477 U44792 X72427 AJ548508 L01279 L38434 M74019 M87478 S67637 U43765 U43766 U43770 U43773 U66190 X85996 X85997 Y14736 AJ010446 BC073775 AF417853 TSC_hg19_v1_chr2_-_89619885 BC070334	-862366	-	TSC_hg19_v1_chr2_-_91847997 BC030764	1365784	-	AK097438 BC021716 NM_144705 AK296678 CU692394	5055031	+	BC000458 BC003006 AK311844 TSC_hg19_v1_chr2_+_95691453 NM_002371 NM_022438 NM_022439 NM_022440 M15800 AB529205 CR541879 X76678 X76679 X76680 X76681	5209263	+	BC070334|IGKC|3514|immunoglobulin kappa constant##AK097438|TEKT4|150483|tektin 4##BC021716|TEKT4|150483|tektin 4##NM_144705|TEKT4|150483|tektin 4##BC000458|MAL|4118|mal, T-cell differentiation protein##BC003006|MAL|4118|mal, T-cell differentiation protein##AK311844|MAL|4118|mal, T-cell differentiation protein##NM_002371|MAL|4118|mal, T-cell differentiation protein##NM_022438|MAL|4118|mal, T-cell differentiation protein##NM_022439|MAL|4118|mal, T-cell differentiation protein##NM_022440|MAL|4118|mal, T-cell differentiation protein##M15800|MAL|4118|mal, T-cell differentiation protein##CR541879|MAL|4118|mal, T-cell differentiation protein##X76678|MAL|4118|mal, T-cell differentiation protein##X76679|MAL|4118|mal, T-cell differentiation protein##X76680|MAL|4118|mal, T-cell differentiation protein##X76681|MAL|4118|mal, T-cell differentiation protein	0.0	
chr9	125702896	125703068	reg1001021.p1	4.560	+	BC018748 NM_020924 TSC_hg19_v1_chr9_-_125693788	-9196	-	X82018 AK292401 BC037282 NM_006626	-27393	-	BC044642 AL833177 TSC_hg19_v1_chr9_-_125667584 NM_001100588 NM_018835	-35438	-	AK131449 TSC_hg19_v1_chr9_+_125703299 BC020609 NM_012197 AK022408 BC054492 AF161357 AJ011679	246	+	AK294531 AK299686 TSC_hg19_v1_chr9_+_125795928 AK313539	92885	+	AB384939 BC066885 BC066886 BC067532 BC067533 BC067534 CU688178 NM_005294	93863	+	BC018748|ZBTB26|57684|zinc finger and BTB domain containing 26##NM_020924|ZBTB26|57684|zinc finger and BTB domain containing 26##X82018|ZBTB6|10773|zinc finger and BTB domain containing 6##AK292401|ZBTB6|10773|zinc finger and BTB domain containing 6##BC037282|ZBTB6|10773|zinc finger and BTB domain containing 6##NM_006626|ZBTB6|10773|zinc finger and BTB domain containing 6##BC044642|RC3H2|54542|ring finger and CCCH-type domains 2##AL833177|RC3H2|54542|ring finger and CCCH-type domains 2##NM_001100588|RC3H2|54542|ring finger and CCCH-type domains 2##NM_018835|RC3H2|54542|ring finger and CCCH-type domains 2##AK131449|RABGAP1|23637|RAB GTPase activating protein 1##BC020609|RABGAP1|23637|RAB GTPase activating protein 1##NM_012197|RABGAP1|23637|RAB GTPase activating protein 1##AK022408|RABGAP1|23637|RAB GTPase activating protein 1##BC054492|RABGAP1|23637|RAB GTPase activating protein 1##AF161357|RABGAP1|23637|RAB GTPase activating protein 1##AJ011679|RABGAP1|23637|RAB GTPase activating protein 1##AK294531|RABGAP1|23637|RAB GTPase activating protein 1##AK299686|GPR21|2844|G protein-coupled receptor 21##AK313539|GPR21|2844|G protein-coupled receptor 21##BC066885|GPR21|2844|G protein-coupled receptor 21##BC066886|GPR21|2844|G protein-coupled receptor 21##BC067532|GPR21|2844|G protein-coupled receptor 21##BC067533|GPR21|2844|G protein-coupled receptor 21##BC067534|GPR21|2844|G protein-coupled receptor 21##NM_005294|GPR21|2844|G protein-coupled receptor 21	0.0	
chr8	107738230	107738366	reg1001006.p1	4.559	+	TSC_hg19_v1_chr8_+_107670114 AK292899 BC032710 BC019691	-68183	+	AK123667 NM_181354 TSC_hg19_v1_chr8_+_107670081 BC035484	-68310	+	AK296561 NM_001198532	-278147	+	AK303695 NM_001198534 NM_001198535 AB075503 AK302844 AK316153 FN650109	57	+	AF503617 AB463396 AM393063 BC105103 BC105105 AL833422 AL832152 NM_139166 AK092694 AX747674	44146	-	U83508 BC152411 BC152419 D13628 AY055342 NM_001146 NM_001199859 BX648814	771890	-	AK292899|OXR1|55074|oxidation resistance 1##BC032710|OXR1|55074|oxidation resistance 1##BC019691|OXR1|55074|oxidation resistance 1##AK123667|OXR1|55074|oxidation resistance 1##NM_181354|OXR1|55074|oxidation resistance 1##BC035484|OXR1|55074|oxidation resistance 1##AK296561|OXR1|55074|oxidation resistance 1##NM_001198532|OXR1|55074|oxidation resistance 1##AK303695|OXR1|55074|oxidation resistance 1##NM_001198534|OXR1|55074|oxidation resistance 1##NM_001198535|OXR1|55074|oxidation resistance 1##AB075503|OXR1|55074|oxidation resistance 1##AK302844|OXR1|55074|oxidation resistance 1##AK316153|OXR1|55074|oxidation resistance 1##FN650109|OXR1|55074|oxidation resistance 1##AF503617|ABRA|137735|actin-binding Rho activating protein##AM393063|ABRA|137735|actin-binding Rho activating protein##BC105103|ABRA|137735|actin-binding Rho activating protein##BC105105|ABRA|137735|actin-binding Rho activating protein##AL833422|ABRA|137735|actin-binding Rho activating protein##AL832152|ABRA|137735|actin-binding Rho activating protein##NM_139166|ABRA|137735|actin-binding Rho activating protein##AK092694|ABRA|137735|actin-binding Rho activating protein##U83508|ANGPT1|284|angiopoietin 1##BC152411|ANGPT1|284|angiopoietin 1##BC152419|ANGPT1|284|angiopoietin 1##D13628|ANGPT1|284|angiopoietin 1##AY055342|ANGPT1|284|angiopoietin 1##NM_001146|ANGPT1|284|angiopoietin 1##NM_001199859|ANGPT1|284|angiopoietin 1##BX648814|ANGPT1|284|angiopoietin 1	0.0	
chr11	568487	568593	reg1001687.p1	4.558	+	AK123483 TSC_hg19_v1_chr11_-_568468	-96	-	BC106921 BC106922 M91083 NM_001143994 NM_003475	-7091	+	TSC_hg19_v1_chr11_+_560986 NM_001143993	-7564	+	TSC_hg19_v1_chr11_-_575850 AK057794 AK123970	7326	-	NM_020901 TSC_hg19_v1_chr11_+_576482 AB040975 BC146771 AK308541 BC136615 BC144293 BC144294 BC144295 BC112931	7965	+	AF076494 NM_004031	47148	-	AK123483|MIR210HG|100506211|MIR210 host gene (non-protein coding)##BC106921|RASSF7|8045|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7##BC106922|RASSF7|8045|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7##M91083|RASSF7|8045|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7##NM_001143994|RASSF7|8045|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7##NM_003475|RASSF7|8045|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7##NM_001143993|RASSF7|8045|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7##AK057794|LOC143666|143666|uncharacterized LOC143666##AK123970|LOC143666|143666|uncharacterized LOC143666##NM_020901|PHRF1|57661|PHD and ring finger domains 1##AB040975|PHRF1|57661|PHD and ring finger domains 1##BC146771|PHRF1|57661|PHD and ring finger domains 1##AK308541|PHRF1|57661|PHD and ring finger domains 1##BC136615|PHRF1|57661|PHD and ring finger domains 1##BC144293|PHRF1|57661|PHD and ring finger domains 1##BC144294|PHRF1|57661|PHD and ring finger domains 1##BC144295|PHRF1|57661|PHD and ring finger domains 1##BC112931|PHRF1|57661|PHD and ring finger domains 1##AF076494|IRF7|3665|interferon regulatory factor 7##NM_004031|IRF7|3665|interferon regulatory factor 7	0.438151	denovo_WM_21:-36:0.426
chr7	99102171	99102282	reg1001081.p1	4.553	+	TSC_hg19_v1_chr7_-_99097910 AK022360 AY261374	-4311	-	AB527469 CU690858 EU446676 TSC_hg19_v1_chr7_-_99097899 AK222948 BC051847 NM_032164 BC017051 AJ297365 AK172865 BC062588 AY642122 BC025241	-4415	-	TSC_hg19_v1_chr7_+_99070534 BC089424 BC050286 BX648360	-31626	+	NM_145102 AF170025 BC030790	58	+	NM_014569 TSC_hg19_v1_chr7_+_99102599	359	+	TSC_hg19_v1_chr7_+_99102612 AK027714 BC015622 AB023232	390	+	AK022360|ZNF394|84124|zinc finger protein 394##EU446676|ZNF394|84124|zinc finger protein 394##AK222948|ZNF394|84124|zinc finger protein 394##BC051847|ZNF394|84124|zinc finger protein 394##NM_032164|ZNF394|84124|zinc finger protein 394##BC017051|ZNF394|84124|zinc finger protein 394##AJ297365|ZNF394|84124|zinc finger protein 394##AK172865|ZNF394|84124|zinc finger protein 394##AY642122|ZNF394|84124|zinc finger protein 394##BC025241|ZNF394|84124|zinc finger protein 394##BC089424|ZNF789|285989|zinc finger protein 789##BC050286|ZNF789|285989|zinc finger protein 789##BX648360|ZNF789|285989|zinc finger protein 789##NM_145102|ZKSCAN5|23660|zinc finger with KRAB and SCAN domains 5##AF170025|ZKSCAN5|23660|zinc finger with KRAB and SCAN domains 5##BC030790|ZKSCAN5|23660|zinc finger with KRAB and SCAN domains 5##NM_014569|ZKSCAN5|23660|zinc finger with KRAB and SCAN domains 5##AK027714|ZKSCAN5|23660|zinc finger with KRAB and SCAN domains 5##AB023232|ZKSCAN5|23660|zinc finger with KRAB and SCAN domains 5	0.899301	denovo_WM_21:3:0.664	denovo_WM_21:-37:0.217
chr1	1677813	1677921	reg1001281.p2	4.550	+	AL049665 NM_001199787 NM_182838 TSC_hg19_v1_chr1_-_1677454 BC110653	-406	-	TSC_hg19_v1_chr1_-_1655767 AK303446 AF067518 AF067519 AF067520 AF067521 AF067522 AF067523 AK301495 AK304679 BC009375 AF067512 AF067513 AF067514 AF067515 AF067516 AF067517 AK303451 NM_033486 NM_033487 NM_033488 NM_033489 NM_033492 NM_033493 U04816 U04817 U04818 U04824 U07704 U07705 NM_024011 NM_033529	-22091	-	AB007916 TSC_hg19_v1_chr1_-_1624212 NM_001110781	-53650	-	AK296722 NM_001198995	12213	-	TSC_hg19_v1_chr1_-_1709864 AK291728 AK290161 AK023114 NM_023018	32019	-	BC001709 TSC_hg19_v1_chr1_-_1710295 AK291599 NM_001198993	32402	-	AL049665|SLC35E2|9906|solute carrier family 35, member E2##NM_001199787|SLC35E2|9906|solute carrier family 35, member E2##NM_182838|SLC35E2|9906|solute carrier family 35, member E2##BC110653|SLC35E2B|728661|solute carrier family 35, member E2B##AK303446|CDK11B|984|cyclin-dependent kinase 11B##AF067518|CDK11A|728642|cyclin-dependent kinase 11A##AF067519|CDK11A|728642|cyclin-dependent kinase 11A##AF067520|CDK11A|728642|cyclin-dependent kinase 11A##AF067521|CDK11A|728642|cyclin-dependent kinase 11A##AF067522|CDK11A|728642|cyclin-dependent kinase 11A##AF067523|CDK11A|728642|cyclin-dependent kinase 11A##AK301495|CDK11B|984|cyclin-dependent kinase 11B##AK304679|CDK11B|984|cyclin-dependent kinase 11B##BC009375|CDK11B|984|cyclin-dependent kinase 11B##AF067512|CDK11B|984|cyclin-dependent kinase 11B##AF067513|CDK11B|984|cyclin-dependent kinase 11B##AF067514|CDK11B|984|cyclin-dependent kinase 11B##AF067515|CDK11B|984|cyclin-dependent kinase 11B##AF067516|CDK11B|984|cyclin-dependent kinase 11B##AF067517|CDK11B|984|cyclin-dependent kinase 11B##AK303451|CDK11B|984|cyclin-dependent kinase 11B##NM_033486|CDK11B|984|cyclin-dependent kinase 11B##NM_033487|CDK11B|984|cyclin-dependent kinase 11B##NM_033488|CDK11B|984|cyclin-dependent kinase 11B##NM_033489|CDK11B|984|cyclin-dependent kinase 11B##NM_033492|CDK11B|984|cyclin-dependent kinase 11B##NM_033493|CDK11B|984|cyclin-dependent kinase 11B##U04816|CDK11B|984|cyclin-dependent kinase 11B##U04817|CDK11B|984|cyclin-dependent kinase 11B##U04818|CDK11B|984|cyclin-dependent kinase 11B##U04824|CDK11B|984|cyclin-dependent kinase 11B##U07704|CDK11A|728642|cyclin-dependent kinase 11A##U07705|CDK11A|728642|cyclin-dependent kinase 11A##NM_024011|CDK11A|728642|cyclin-dependent kinase 11A##NM_033529|CDK11A|728642|cyclin-dependent kinase 11A##AB007916|SLC35E2B|728661|solute carrier family 35, member E2B##NM_001110781|SLC35E2B|728661|solute carrier family 35, member E2B##AK296722|NADK|65220|NAD kinase##NM_001198995|NADK|65220|NAD kinase##AK291728|NADK|65220|NAD kinase##AK290161|NADK|65220|NAD kinase##AK023114|NADK|65220|NAD kinase##NM_023018|NADK|65220|NAD kinase##BC001709|NADK|65220|NAD kinase##AK291599|NADK|65220|NAD kinase##NM_001198993|NADK|65220|NAD kinase	0.0	
chr11	50649536	50649653	reg1001044.p1	4.549	+	BC136850 BC136851 NM_001005270	-645524	-	BC137005 NM_001001955	-675652	+	TSC_hg19_v1_chr11_-_49230053 DQ088979 AF176574 BC025672 AK312366 AK295368 AK295470 AK300532 M99487 NM_001014986 NM_001193471 NM_001193472 NM_001193473 NM_004476 S76978	-1419487	-	BC140750 NM_001005272	762853	-	NM_001004703	865687	+	AF521869 BC001862 NM_024114	4380063	+	BC136850|OR4C12|283093|olfactory receptor, family 4, subfamily C, member 12##BC136851|OR4C12|283093|olfactory receptor, family 4, subfamily C, member 12##NM_001005270|OR4C12|283093|olfactory receptor, family 4, subfamily C, member 12##BC137005|OR4C13|283092|olfactory receptor, family 4, subfamily C, member 13##NM_001001955|OR4C13|283092|olfactory receptor, family 4, subfamily C, member 13##DQ088979|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AF176574|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##BC025672|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AK312366|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AK295368|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AK295470|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AK300532|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##M99487|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_001014986|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_001193471|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_001193472|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_001193473|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_004476|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##S76978|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##BC140750|OR4A5|81318|olfactory receptor, family 4, subfamily A, member 5##NM_001005272|OR4A5|81318|olfactory receptor, family 4, subfamily A, member 5##NM_001004703|OR4C46|119749|olfactory receptor, family 4, subfamily C, member 46##AF521869|TRIM48|79097|tripartite motif containing 48##BC001862|TRIM48|79097|tripartite motif containing 48##NM_024114|TRIM48|79097|tripartite motif containing 48	0.0	
chr3	105587964	105588058	reg1000899.p1	4.548	+	TSC_hg19_v1_chr3_-_105587818 AK094184 AK292792 BC032851 NM_170662 U26710 U26711 U26712	-204	-	CR749655 TSC_hg19_v1_chr3_-_105421064	-166957	-	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	-502189	+	TSC_hg19_v1_chr3_-_106959482 BC036229	1371468	-	TSC_hg19_v1_chr3_+_106959546 AK309100 BC039550 AK055934	1371581	+	AK058091 NM_032600 BC030780 AF367469 CU689006 DQ890829 DQ890830 DQ893985	1508299	+	AK094184|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK292792|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##BC032851|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##NM_170662|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26710|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26711|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26712|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##CR749655|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule##AK309100|LOC344595|344595|uncharacterized LOC344595##BC039550|LOC344595|344595|uncharacterized LOC344595##AK055934|LOC344595|344595|uncharacterized LOC344595##AK058091|CCDC54|84692|coiled-coil domain containing 54##NM_032600|CCDC54|84692|coiled-coil domain containing 54##BC030780|CCDC54|84692|coiled-coil domain containing 54##AF367469|CCDC54|84692|coiled-coil domain containing 54##DQ890829|CCDC54|84692|coiled-coil domain containing 54##DQ890830|CCDC54|84692|coiled-coil domain containing 54##DQ893985|CCDC54|84692|coiled-coil domain containing 54	0.514349	denovo_WM_21:-33:0.514
chr16	4897303	4897441	reg1001599.p1	4.540	+	AB529023 AF326966 AY352585 TSC_hg19_v1_chr16_-_4897284 BC064940 AK307834 AK296842 BC047223 CR933687 AF244907 BC032855 NM_032569	-84	-	TSC_hg19_v1_chr16_-_4896209 BC003693	-1169	-	TSC_hg19_v1_chr16_-_4855167 BC063039	-42205	-	BC013750 NM_001079514	539	+	NM_016936 AF108461	4773	+	AF013717 BC114620 AF001691 NM_002705 TSC_hg19_v1_chr16_-_4987144	89732	-	AF326966|GLYR1|84656|glyoxylate reductase 1 homolog (Arabidopsis)##AY352585|GLYR1|84656|glyoxylate reductase 1 homolog (Arabidopsis)##BC064940|GLYR1|84656|glyoxylate reductase 1 homolog (Arabidopsis)##AK307834|GLYR1|84656|glyoxylate reductase 1 homolog (Arabidopsis)##AK296842|GLYR1|84656|glyoxylate reductase 1 homolog (Arabidopsis)##BC047223|GLYR1|84656|glyoxylate reductase 1 homolog (Arabidopsis)##CR933687|GLYR1|84656|glyoxylate reductase 1 homolog (Arabidopsis)##AF244907|GLYR1|84656|glyoxylate reductase 1 homolog (Arabidopsis)##BC032855|GLYR1|84656|glyoxylate reductase 1 homolog (Arabidopsis)##NM_032569|GLYR1|84656|glyoxylate reductase 1 homolog (Arabidopsis)##BC003693|GLYR1|84656|glyoxylate reductase 1 homolog (Arabidopsis)##BC063039|GLYR1|84656|glyoxylate reductase 1 homolog (Arabidopsis)##BC013750|UBN1|29855|ubinuclein 1##NM_001079514|UBN1|29855|ubinuclein 1##NM_016936|UBN1|29855|ubinuclein 1##AF108461|UBN1|29855|ubinuclein 1##AF013717|PPL|5493|periplakin##BC114620|PPL|5493|periplakin##AF001691|PPL|5493|periplakin##NM_002705|PPL|5493|periplakin	0.045638	
chr2	98280544	98280676	reg1001727.p1	4.537	+	TSC_hg19_v1_chr2_-_98280591 NM_005735	-36	-	TSC_hg19_v1_chr2_-_98280472 CU678694 DQ893438 DQ896748 AB528334 BC006372 X82207 BC004374 BC010090	-180	-	TSC_hg19_v1_chr2_-_98275064 BC025274	-5530	-	L05148 NM_001079 AK303341 AK310637 AK310628 BC053878	49432	+	AB083211 NM_207519	70258	+	AK025852 TSC_hg19_v1_chr2_-_98408976	128312	-	NM_005735|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##DQ893438|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##DQ896748|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##BC006372|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##X82207|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##BC004374|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##BC010090|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##BC025274|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##L05148|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##NM_001079|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK303341|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK310637|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK310628|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##BC053878|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AB083211|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##NM_207519|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK025852|TMEM131|23505|transmembrane protein 131	0.244142	denovo_WM_21:-80:0.205
chr6	347099	347282	reg1001397.p1	4.537	+	AF424702 AK310653 TSC_hg19_v1_chr6_+_292526 AK296402 AF165519 DQ893393 DQ896715 AB528664 CU692732	-54693	+	TSC_hg19_v1_chr6_+_292080 AY249859 BC022847 NM_020185	-55105	+	None	None	None	NM_001195286 NM_002460 U52682 TSC_hg19_v1_chr6_+_391751 AK310149 U63738 D78261 BC015752	44574	+	AF508547 BC101697 BC101699 NM_148959	309763	-	TSC_hg19_v1_chr6_-_693110 AJ414403 AL833213 AK056564 NM_018303 BC080542 AK302941 AK314628	345900	-	AF424702|DUSP22|56940|dual specificity phosphatase 22##AK310653|DUSP22|56940|dual specificity phosphatase 22##AK296402|DUSP22|56940|dual specificity phosphatase 22##AF165519|DUSP22|56940|dual specificity phosphatase 22##DQ893393|DUSP22|56940|dual specificity phosphatase 22##DQ896715|DUSP22|56940|dual specificity phosphatase 22##AY249859|DUSP22|56940|dual specificity phosphatase 22##BC022847|DUSP22|56940|dual specificity phosphatase 22##NM_020185|DUSP22|56940|dual specificity phosphatase 22##NM_001195286|IRF4|3662|interferon regulatory factor 4##NM_002460|IRF4|3662|interferon regulatory factor 4##U52682|IRF4|3662|interferon regulatory factor 4##AK310149|IRF4|3662|interferon regulatory factor 4##U63738|IRF4|3662|interferon regulatory factor 4##D78261|IRF4|3662|interferon regulatory factor 4##BC015752|IRF4|3662|interferon regulatory factor 4##AF508547|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##BC101697|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##BC101699|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##NM_148959|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##AJ414403|EXOC2|55770|exocyst complex component 2##AL833213|EXOC2|55770|exocyst complex component 2##AK056564|EXOC2|55770|exocyst complex component 2##NM_018303|EXOC2|55770|exocyst complex component 2##BC080542|EXOC2|55770|exocyst complex component 2##AK302941|EXOC2|55770|exocyst complex component 2##AK314628|EXOC2|55770|exocyst complex component 2	0.444186	denovo_WM_21:-79:0.444
chr15	75932594	75932711	reg1001593.p2	4.533	+	AB463774 AM393583 CU675427 CU680036 TSC_hg19_v1_chr15_-_75932566 BC020557 BC011745 AY050497 AL136913 BC006487 AK001830 AK223121 NM_018285	-66	-	NM_001042588	-13934	-	NM_001042581 NM_005701	-14207	-	BC018775 NM_153271 AL833039 EF219141 DQ891695 DQ895211 EU831407 EU831499	8742	+	AB462981 AY359468 X96753 TSC_hg19_v1_chr15_-_76005157	72476	-	TSC_hg19_v1_chr15_-_76005190 NM_001897	72543	-	AM393583|IMP3|55272|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)##BC020557|IMP3|55272|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)##BC011745|IMP3|55272|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)##AY050497|IMP3|55272|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)##AL136913|IMP3|55272|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)##BC006487|IMP3|55272|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)##AK001830|IMP3|55272|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)##AK223121|IMP3|55272|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)##NM_018285|IMP3|55272|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)##NM_001042588|SNUPN|10073|snurportin 1##NM_001042581|SNUPN|10073|snurportin 1##NM_005701|SNUPN|10073|snurportin 1##BC018775|SNX33|257364|sorting nexin 33##NM_153271|SNX33|257364|sorting nexin 33##AL833039|SNX33|257364|sorting nexin 33##EF219141|SNX33|257364|sorting nexin 33##DQ891695|SNX33|257364|sorting nexin 33##DQ895211|SNX33|257364|sorting nexin 33##EU831407|SNX33|257364|sorting nexin 33##EU831499|SNX33|257364|sorting nexin 33##AY359468|CSPG4|1464|chondroitin sulfate proteoglycan 4##X96753|CSPG4|1464|chondroitin sulfate proteoglycan 4##NM_001897|CSPG4|1464|chondroitin sulfate proteoglycan 4	1.816152	denovo_WM_21:2:0.937	denovo_WM_21:-33:0.879
chr3	9439141	9439255	reg1000178.p2	4.528	+	AK093640 TSC_hg19_v1_chr3_-_9439124 AL110136	-51	-	TSC_hg19_v1_chr3_-_9438337 BC036698 BC052961	-860	-	TSC_hg19_v1_chr3_+_9404750 NM_001114092 NM_015453 AK023263 BC001622 AK001680 BC010421	-34423	+	TSC_hg19_v1_chr3_+_9439298 NM_001080517	163	+	TSC_hg19_v1_chr3_+_9439556 AK092046 AX747332	376	+	TSC_hg19_v1_chr3_+_9476522 AB384632	37318	+	AK093640|LOC440944|440944|uncharacterized LOC440944##AL110136|LOC440944|440944|uncharacterized LOC440944##BC036698|LOC440944|440944|uncharacterized LOC440944##BC052961|LOC440944|440944|uncharacterized LOC440944##NM_001114092|THUMPD3|25917|THUMP domain containing 3##NM_015453|THUMPD3|25917|THUMP domain containing 3##AK023263|THUMPD3|25917|THUMP domain containing 3##BC001622|THUMPD3|25917|THUMP domain containing 3##AK001680|THUMPD3|25917|THUMP domain containing 3##BC010421|THUMPD3|25917|THUMP domain containing 3##NM_001080517|SETD5|55209|SET domain containing 5##AK092046|SETD5|55209|SET domain containing 5	0.814974	denovo_WM_21:4:0.441	denovo_WM_21:-14:0.374
chr19	58446778	58446912	reg1001769.p2	4.526	+	AK056113 AY695825 NM_133460 AK304632 AK293723	-99	-	TSC_hg19_v1_chr19_-_58427961 BC025783 AK293789 BC103757 NM_152475	-18873	-	BC056684 AF086563 AK022663 TSC_hg19_v1_chr19_-_58400401 AK300483 NM_001144989	-46481	-	TSC_hg19_v1_chr19_-_58459075 BC001438 AK314094 NM_005773	12217	-	BC033933 NM_152474	39056	-	AK094748 TSC_hg19_v1_chr19_+_58513574	66657	+	AK056113|ZNF418|147686|zinc finger protein 418##AY695825|ZNF418|147686|zinc finger protein 418##NM_133460|ZNF418|147686|zinc finger protein 418##AK304632|ZNF418|147686|zinc finger protein 418##AK293723|ZNF418|147686|zinc finger protein 418##BC025783|ZNF417|147687|zinc finger protein 417##AK293789|ZNF417|147687|zinc finger protein 417##BC103757|ZNF417|147687|zinc finger protein 417##NM_152475|ZNF417|147687|zinc finger protein 417##BC056684|ZNF814|730051|zinc finger protein 814##AF086563|ZNF814|730051|zinc finger protein 814##AK022663|ZNF814|730051|zinc finger protein 814##AK300483|ZNF814|730051|zinc finger protein 814##NM_001144989|ZNF814|730051|zinc finger protein 814##BC001438|ZNF256|10172|zinc finger protein 256##AK314094|ZNF256|10172|zinc finger protein 256##NM_005773|ZNF256|10172|zinc finger protein 256##BC033933|C19orf18|147685|chromosome 19 open reading frame 18##NM_152474|C19orf18|147685|chromosome 19 open reading frame 18##AK094748|LOC100128398|100128398|uncharacterized LOC100128398	0.011615	
chr16	4743522	4743668	reg1001192.p1	4.523	+	BC014199 TSC_hg19_v1_chr16_+_4714741	-28797	+	AB383902 CU690664 EF471397 EF471398 TSC_hg19_v1_chr16_+_4675003	-68607	+	TSC_hg19_v1_chr16_+_4674861 AK299052 BC050389 AB011116	-68733	+	AK315456 NM_001193452 NM_032349 TSC_hg19_v1_chr16_+_4743697	104	+	TSC_hg19_v1_chr16_+_4743721 BC006223 AK092642 AX747647 CU675299	123	+	TSC_hg19_v1_chr16_-_4784249 AK123496 NM_133450 BC031350 BC050387 AK123371 AK301683 NM_001242929	40670	-	BC014199|MGRN1|23295|mahogunin, ring finger 1##EF471397|MGRN1|23295|mahogunin, ring finger 1##EF471398|MGRN1|23295|mahogunin, ring finger 1##AK299052|MGRN1|23295|mahogunin, ring finger 1##BC050389|MGRN1|23295|mahogunin, ring finger 1##AB011116|MGRN1|23295|mahogunin, ring finger 1##AK315456|NUDT16L1|84309|nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1##NM_001193452|NUDT16L1|84309|nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1##NM_032349|NUDT16L1|84309|nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1##BC006223|NUDT16L1|84309|nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1##AK092642|NUDT16L1|84309|nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1##AK123496|ANKS3|124401|ankyrin repeat and sterile alpha motif domain containing 3##NM_133450|ANKS3|124401|ankyrin repeat and sterile alpha motif domain containing 3##BC031350|ANKS3|124401|ankyrin repeat and sterile alpha motif domain containing 3##BC050387|ANKS3|124401|ankyrin repeat and sterile alpha motif domain containing 3##AK123371|ANKS3|124401|ankyrin repeat and sterile alpha motif domain containing 3##AK301683|ANKS3|124401|ankyrin repeat and sterile alpha motif domain containing 3##NM_001242929|ANKS3|124401|ankyrin repeat and sterile alpha motif domain containing 3	0.030062	
chr17	79633651	79633758	reg1001588.p1	4.521	+	TSC_hg19_v1_chr17_-_79633636 AY007126	-47	-	TSC_hg19_v1_chr17_-_79633609 BC090923 NM_001039842 BC048102 BC038412	-89	-	M36476 BC106884 BX647779 NM_002602 BX537414 AB590054	-10117	-	TSC_hg19_v1_chr17_+_79633775 NM_199287 BC009369 CU679329	62	+	BC063687 AK303526 TSC_hg19_v1_chr17_-_79650787 BC042380 AK304718 AK095847 HQ258109 BC105076 BC105078 NM_001040025	17150	-	NM_004712 TSC_hg19_v1_chr17_+_79651020 AK294190 BC003565 U43895	17287	+	AY007126|C17orf90|339229|chromosome 17 open reading frame 90##BC090923|C17orf90|339229|chromosome 17 open reading frame 90##NM_001039842|C17orf90|339229|chromosome 17 open reading frame 90##BC048102|C17orf90|339229|chromosome 17 open reading frame 90##BC038412|C17orf90|339229|chromosome 17 open reading frame 90##M36476|PDE6G|5148|phosphodiesterase 6G, cGMP-specific, rod, gamma##BC106884|PDE6G|5148|phosphodiesterase 6G, cGMP-specific, rod, gamma##BX647779|PDE6G|5148|phosphodiesterase 6G, cGMP-specific, rod, gamma##NM_002602|PDE6G|5148|phosphodiesterase 6G, cGMP-specific, rod, gamma##BX537414|PDE6G|5148|phosphodiesterase 6G, cGMP-specific, rod, gamma##NM_199287|CCDC137|339230|coiled-coil domain containing 137##BC009369|CCDC137|339230|coiled-coil domain containing 137##BC063687|ARL16|339231|ADP-ribosylation factor-like 16##AK303526|ARL16|339231|ADP-ribosylation factor-like 16##BC042380|ARL16|339231|ADP-ribosylation factor-like 16##AK304718|ARL16|339231|ADP-ribosylation factor-like 16##AK095847|ARL16|339231|ADP-ribosylation factor-like 16##HQ258109|ARL16|339231|ADP-ribosylation factor-like 16##BC105076|ARL16|339231|ADP-ribosylation factor-like 16##BC105078|ARL16|339231|ADP-ribosylation factor-like 16##NM_001040025|ARL16|339231|ADP-ribosylation factor-like 16##NM_004712|HGS|9146|hepatocyte growth factor-regulated tyrosine kinase substrate##AK294190|HGS|9146|hepatocyte growth factor-regulated tyrosine kinase substrate##BC003565|HGS|9146|hepatocyte growth factor-regulated tyrosine kinase substrate##U43895|HGS|9146|hepatocyte growth factor-regulated tyrosine kinase substrate	0.016913	
chr1	44435494	44435612	reg1001409.p2	4.513	+	TSC_hg19_v1_chr1_+_44412640 BC008194	-22891	+	TSC_hg19_v1_chr1_+_44412625 AB018267	-22943	+	TSC_hg19_v1_chr1_+_44412483 NM_014652	-23092	+	TSC_hg19_v1_chr1_+_44435681 NM_001039589 NM_001384 AK315506 BC003181 AK297933 AK091303 AX746904 BC001389 BC016956 AF053003 BT007431	195	+	TSC_hg19_v1_chr1_+_44440601 NM_001039457 NM_004047	5047	+	TSC_hg19_v1_chr1_+_44440631 D89052	5079	+	BC008194|IPO13|9670|importin 13##AB018267|IPO13|9670|importin 13##NM_014652|IPO13|9670|importin 13##NM_001039589|DPH2|1802|DPH2 homolog (S. cerevisiae)##NM_001384|DPH2|1802|DPH2 homolog (S. cerevisiae)##AK315506|DPH2|1802|DPH2 homolog (S. cerevisiae)##BC003181|DPH2|1802|DPH2 homolog (S. cerevisiae)##AK297933|DPH2|1802|DPH2 homolog (S. cerevisiae)##AK091303|DPH2|1802|DPH2 homolog (S. cerevisiae)##BC001389|DPH2|1802|DPH2 homolog (S. cerevisiae)##BC016956|DPH2|1802|DPH2 homolog (S. cerevisiae)##AF053003|DPH2|1802|DPH2 homolog (S. cerevisiae)##BT007431|DPH2|1802|DPH2 homolog (S. cerevisiae)##NM_001039457|ATP6V0B|533|ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b##NM_004047|ATP6V0B|533|ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b##D89052|ATP6V0B|533|ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b	0.0	
chr19	38893631	38893742	reg1001351.p2	4.513	+	BC151136 DQ323927 DQ323928 NM_001039616 NM_001042522	-12798	+	AF538037 AF538035 AF538036 BC035008 NM_152657 AK057356	-15018	-	TSC_hg19_v1_chr19_+_38865427 AK304486 BC001164 BC065006 D38047 AB464081 CU674590 BT019688 AK308809	-28150	+	TSC_hg19_v1_chr19_+_38893785 BC117258 BC143830 BC171747 NM_174905 HQ258606 BC036482	94	+	TSC_hg19_v1_chr19_+_38893817 BC100033	127	+	TSC_hg19_v1_chr19_+_38893839 BC080606 AK128745	215	+	BC151136|SPRED3|399473|sprouty-related, EVH1 domain containing 3##DQ323927|SPRED3|399473|sprouty-related, EVH1 domain containing 3##DQ323928|SPRED3|399473|sprouty-related, EVH1 domain containing 3##NM_001039616|SPRED3|399473|sprouty-related, EVH1 domain containing 3##NM_001042522|SPRED3|399473|sprouty-related, EVH1 domain containing 3##AF538037|GGN|199720|gametogenetin##AF538035|GGN|199720|gametogenetin##AF538036|GGN|199720|gametogenetin##BC035008|GGN|199720|gametogenetin##NM_152657|GGN|199720|gametogenetin##AK057356|GGN|199720|gametogenetin##AK304486|PSMD8|5714|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8##BC001164|PSMD8|5714|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8##BC065006|PSMD8|5714|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8##D38047|PSMD8|5714|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8##BT019688|PSMD8|5714|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8##AK308809|PSMD8|5714|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8##BC117258|FAM98C|147965|family with sequence similarity 98, member C##BC143830|FAM98C|147965|family with sequence similarity 98, member C##BC171747|FAM98C|147965|family with sequence similarity 98, member C##NM_174905|FAM98C|147965|family with sequence similarity 98, member C##HQ258606|FAM98C|147965|family with sequence similarity 98, member C##BC036482|FAM98C|147965|family with sequence similarity 98, member C##BC100033|FAM98C|147965|family with sequence similarity 98, member C##BC080606|FAM98C|147965|family with sequence similarity 98, member C##AK128745|FAM98C|147965|family with sequence similarity 98, member C	1.186663	denovo_WM_21:6:0.762	denovo_WM_21:-29:0.425
chr13	111367903	111367974	reg1000634.p2	4.512	+	AB024402 AF181849 NM_005537	-595	+	AB024401 AF149721 TSC_hg19_v1_chr13_+_111366061	-1883	+	NM_198218 AF181850 NM_198219	-2322	+	CU674848 CU691752 TSC_hg19_v1_chr13_-_111567293	199349	-	TSC_hg19_v1_chr13_-_111567375 BC001727 AK096083 BC039715	199427	-	AK000100 NM_017664 TSC_hg19_v1_chr13_-_111567417	199478	-	AB024402|ING1|3621|inhibitor of growth family, member 1##AF181849|ING1|3621|inhibitor of growth family, member 1##NM_005537|ING1|3621|inhibitor of growth family, member 1##AB024401|ING1|3621|inhibitor of growth family, member 1##AF149721|ING1|3621|inhibitor of growth family, member 1##NM_198218|ING1|3621|inhibitor of growth family, member 1##AF181850|ING1|3621|inhibitor of growth family, member 1##NM_198219|ING1|3621|inhibitor of growth family, member 1##BC001727|ANKRD10|55608|ankyrin repeat domain 10##AK096083|ANKRD10|55608|ankyrin repeat domain 10##BC039715|ANKRD10|55608|ankyrin repeat domain 10##AK000100|ANKRD10|55608|ankyrin repeat domain 10##NM_017664|ANKRD10|55608|ankyrin repeat domain 10	0.204843	denovo_WM_21:48:0.205
chr17	5322209	5322280	reg1001336.p1	4.511	+	TSC_hg19_v1_chr17_+_5185578 NM_001083585 NM_004703 AK314183 AK297535 BC041700 BC032435 X91141 BC014025 BC065242 BC018742 AK310932 X77723 AF098638	-136578	+	DQ778084 HQ258063 HQ258597 AK297035 BC130554 BC130556 BC144395 NM_207103 BC127925 AK057142 AY358809 AK310145	-184143	-	TSC_hg19_v1_chr17_+_5095367 AK021878 BC029580	-226864	+	AK308142 TSC_hg19_v1_chr17_-_5322979 BC000335 AK225247 AK298158 AK299000	681	-	AY775314 AY775315 AY775316 AY775317 AY775318 AY775319 AY775320 AY775321 AY775323 NM_001033002 NM_001160243 NM_001160244 NM_001160246 NM_001160266 NM_001160267	716	+	TSC_hg19_v1_chr17_-_5322983 NM_002532	776	-	NM_001083585|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##NM_004703|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK314183|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK297535|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC041700|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC032435|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X91141|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC065242|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC018742|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK310932|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X77723|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AF098638|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##DQ778084|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258063|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258597|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK297035|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130554|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130556|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC144395|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##NM_207103|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC127925|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK057142|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AY358809|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK310145|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK021878|LOC100130950|100130950|uncharacterized LOC100130950##BC029580|LOC100130950|100130950|uncharacterized LOC100130950##AK308142|NUP88|4927|nucleoporin 88kDa##BC000335|NUP88|4927|nucleoporin 88kDa##AK225247|NUP88|4927|nucleoporin 88kDa##AK298158|NUP88|4927|nucleoporin 88kDa##AK299000|NUP88|4927|nucleoporin 88kDa##AY775314|RPAIN|84268|RPA interacting protein##AY775315|RPAIN|84268|RPA interacting protein##AY775316|RPAIN|84268|RPA interacting protein##AY775317|RPAIN|84268|RPA interacting protein##AY775318|RPAIN|84268|RPA interacting protein##AY775319|RPAIN|84268|RPA interacting protein##AY775320|RPAIN|84268|RPA interacting protein##AY775321|RPAIN|84268|RPA interacting protein##AY775323|RPAIN|84268|RPA interacting protein##NM_001033002|RPAIN|84268|RPA interacting protein##NM_001160243|RPAIN|84268|RPA interacting protein##NM_001160244|RPAIN|84268|RPA interacting protein##NM_001160246|RPAIN|84268|RPA interacting protein##NM_001160266|RPAIN|84268|RPA interacting protein##NM_001160267|RPAIN|84268|RPA interacting protein##NM_002532|NUP88|4927|nucleoporin 88kDa	0.023905	
chr3	116440670	116440777	reg1001174.p1	4.509	+	TSC_hg19_v1_chr3_-_116164363 BC033803 NM_002338	-276350	-	AK315286 TSC_hg19_v1_chr3_-_116164338	-276392	-	TSC_hg19_v1_chr3_+_115342501 AK289699 M25667 AK313658 BX648458 AK290100 BC007936 AM392759 AM393509 DQ893244 DQ896574 AB463057 BT019771 BT019810	-1098304	+	AB079879 AX781653 AK296503 TSC_hg19_v1_chr3_-_118753633 AK122611	2312810	-	AB071618 NM_001015887 TSC_hg19_v1_chr3_-_118753697 AY358141	2312960	-	AK097667 NM_152538 AK292387	2424174	-	BC033803|LSAMP|4045|limbic system-associated membrane protein##NM_002338|LSAMP|4045|limbic system-associated membrane protein##AK315286|LSAMP|4045|limbic system-associated membrane protein##AK289699|GAP43|2596|growth associated protein 43##M25667|GAP43|2596|growth associated protein 43##AK313658|GAP43|2596|growth associated protein 43##BX648458|GAP43|2596|growth associated protein 43##AK290100|GAP43|2596|growth associated protein 43##BC007936|GAP43|2596|growth associated protein 43##AM392759|GAP43|2596|growth associated protein 43##AM393509|GAP43|2596|growth associated protein 43##DQ893244|GAP43|2596|growth associated protein 43##DQ896574|GAP43|2596|growth associated protein 43##BT019771|GAP43|2596|growth associated protein 43##BT019810|GAP43|2596|growth associated protein 43##AB079879|IGSF11|152404|immunoglobulin superfamily, member 11##AK296503|IGSF11|152404|immunoglobulin superfamily, member 11##AK122611|IGSF11|152404|immunoglobulin superfamily, member 11##AB071618|IGSF11|152404|immunoglobulin superfamily, member 11##NM_001015887|IGSF11|152404|immunoglobulin superfamily, member 11##AY358141|IGSF11|152404|immunoglobulin superfamily, member 11##AK097667|IGSF11|152404|immunoglobulin superfamily, member 11##NM_152538|IGSF11|152404|immunoglobulin superfamily, member 11##AK292387|IGSF11|152404|immunoglobulin superfamily, member 11	0.0	
chr16	67051982	67052122	reg1001313.p1	4.508	+	NM_001190201 NM_001190202 TSC_hg19_v1_chr16_+_67034441 AK094783 AK300792 AK295483 BC041823 BC064573	-17504	+	AK293061 NM_173815 AK296064	-29523	+	AK025389 NM_001185176	-50675	+	TSC_hg19_v1_chr16_+_67063051 BC018509 NM_001755 NM_022845	10995	+	TSC_hg19_v1_chr16_+_67063217 AK290462 AK291834 AB463544 AF294326 BT006862 CU676254 DQ890558 DQ893719 L20298 AK311724	11236	+	TSC_hg19_v1_chr16_+_67143864 AF176088 BC004556 NM_025187	91802	+	NM_001190201|CES4A|283848|carboxylesterase 4A##NM_001190202|CES4A|283848|carboxylesterase 4A##AK094783|CES4A|283848|carboxylesterase 4A##AK300792|CES4A|283848|carboxylesterase 4A##AK295483|CES4A|283848|carboxylesterase 4A##BC041823|CES4A|283848|carboxylesterase 4A##BC064573|CES4A|283848|carboxylesterase 4A##AK293061|CES4A|283848|carboxylesterase 4A##NM_173815|CES4A|283848|carboxylesterase 4A##AK296064|CES4A|283848|carboxylesterase 4A##AK025389|CES3|23491|carboxylesterase 3##NM_001185176|CES3|23491|carboxylesterase 3##BC018509|CBFB|865|core-binding factor, beta subunit##NM_001755|CBFB|865|core-binding factor, beta subunit##NM_022845|CBFB|865|core-binding factor, beta subunit##AK290462|CBFB|865|core-binding factor, beta subunit##AK291834|CBFB|865|core-binding factor, beta subunit##AF294326|CBFB|865|core-binding factor, beta subunit##BT006862|CBFB|865|core-binding factor, beta subunit##DQ890558|CBFB|865|core-binding factor, beta subunit##DQ893719|CBFB|865|core-binding factor, beta subunit##L20298|CBFB|865|core-binding factor, beta subunit##AK311724|CBFB|865|core-binding factor, beta subunit##AF176088|C16orf70|80262|chromosome 16 open reading frame 70##BC004556|C16orf70|80262|chromosome 16 open reading frame 70##NM_025187|C16orf70|80262|chromosome 16 open reading frame 70	0.990315	denovo_WM_21:2:0.990
chrX	53111259	53111398	reg1001082.p1	4.507	+	BC009861 NM_018969	-32823	+	BC067819 NM_001242489 NM_001242490 NM_001242492 NM_001242493 NM_001242494 NM_001242495 NM_001242496 NM_001242497 NM_014138	-86682	-	AK091598 AX747084 BX649013 CR749619 TSC_hg19_v1_chrX_-_52987693 AK057692 NM_001242491	-123666	-	TSC_hg19_v1_chrX_+_53111548 NM_022117 AK131220 AK292462 AY040871 AF273046 BC024270 AL713652 AB463325 AM392716 AF254794	314	+	TSC_hg19_v1_chrX_+_53123332 EF565109	12078	+	BC054499 BC047751 TSC_hg19_v1_chrX_-_53254393 AK308077 AK304732	143059	-	BC009861|GPR173|54328|G protein-coupled receptor 173##NM_018969|GPR173|54328|G protein-coupled receptor 173##BC067819|FAM156A|29057|family with sequence similarity 156, member A##NM_001242489|FAM156A|29057|family with sequence similarity 156, member A##NM_001242490|FAM156A|29057|family with sequence similarity 156, member A##NM_001242492|FAM156A|29057|family with sequence similarity 156, member A##NM_001242493|FAM156A|29057|family with sequence similarity 156, member A##NM_001242494|FAM156A|29057|family with sequence similarity 156, member A##NM_001242495|FAM156A|29057|family with sequence similarity 156, member A##NM_001242496|FAM156A|29057|family with sequence similarity 156, member A##NM_001242497|FAM156A|29057|family with sequence similarity 156, member A##NM_014138|FAM156A|29057|family with sequence similarity 156, member A##AK091598|FAM156B|727866|family with sequence similarity 156, member B##BX649013|FAM156B|727866|family with sequence similarity 156, member B##CR749619|FAM156A|29057|family with sequence similarity 156, member A##AK057692|FAM156A|29057|family with sequence similarity 156, member A##NM_001242491|FAM156A|29057|family with sequence similarity 156, member A##NM_022117|TSPYL2|64061|TSPY-like 2##AK131220|TSPYL2|64061|TSPY-like 2##AK292462|TSPYL2|64061|TSPY-like 2##AY040871|TSPYL2|64061|TSPY-like 2##AF273046|TSPYL2|64061|TSPY-like 2##BC024270|TSPYL2|64061|TSPY-like 2##AL713652|TSPYL2|64061|TSPY-like 2##AM392716|TSPYL2|64061|TSPY-like 2##AF254794|TSPYL2|64061|TSPY-like 2##EF565109|LOC100132984|100132984|uncharacterized LOC100132984##BC054499|KDM5C|8242|lysine (K)-specific demethylase 5C##BC047751|KDM5C|8242|lysine (K)-specific demethylase 5C##AK308077|KDM5C|8242|lysine (K)-specific demethylase 5C##AK304732|KDM5C|8242|lysine (K)-specific demethylase 5C	1.972985	denovo_WM_21:31:0.983	denovo_WM_21:-99:0.895
chr14	24809495	24809612	reg1000969.p2	4.505	+	AF156884 AY453693 AY494982 AY494983 CU692020 TSC_hg19_v1_chr14_-_24809197 BC062584 AK296309 BC041668 AK296140 AK075275 NM_006871	-414	-	BX248285 BC027943 AK122714 AK126468 NM_001198568 NM_001198592 NM_139247 TSC_hg19_v1_chr14_-_24804278	-5288	-	NM_181657	-27241	+	AK310445 EU887632 EU887633 EU887634 NM_001136022 NM_001198967	26591	+	NM_001198965 NM_004554 BC037735 AK293185 TSC_hg19_v1_chr14_+_24837389 AK311078 AK311425 L41066 BC053855 AB527875 EU446638 EU887641 EU887642 EU887643	27832	+	AK302271 NM_001198966 AK310433 EU887644 EU887645 EU887646 EU887647 EU887648 EU887649 AK300450	28822	+	AF156884|RIPK3|11035|receptor-interacting serine-threonine kinase 3##AY453693|RIPK3|11035|receptor-interacting serine-threonine kinase 3##AY494982|RIPK3|11035|receptor-interacting serine-threonine kinase 3##AY494983|RIPK3|11035|receptor-interacting serine-threonine kinase 3##BC062584|RIPK3|11035|receptor-interacting serine-threonine kinase 3##AK296309|RIPK3|11035|receptor-interacting serine-threonine kinase 3##BC041668|RIPK3|11035|receptor-interacting serine-threonine kinase 3##AK296140|RIPK3|11035|receptor-interacting serine-threonine kinase 3##AK075275|RIPK3|11035|receptor-interacting serine-threonine kinase 3##NM_006871|RIPK3|11035|receptor-interacting serine-threonine kinase 3##BX248285|ADCY4|196883|adenylate cyclase 4##BC027943|ADCY4|196883|adenylate cyclase 4##AK122714|ADCY4|196883|adenylate cyclase 4##AK126468|ADCY4|196883|adenylate cyclase 4##NM_001198568|ADCY4|196883|adenylate cyclase 4##NM_001198592|ADCY4|196883|adenylate cyclase 4##NM_139247|ADCY4|196883|adenylate cyclase 4##NM_181657|LTB4R|1241|leukotriene B4 receptor##AK310445|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887632|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887633|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887634|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##NM_001136022|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##NM_001198967|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##NM_001198965|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##NM_004554|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##BC037735|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##AK293185|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##AK311078|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##AK311425|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##L41066|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##BC053855|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU446638|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887641|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887642|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887643|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##AK302271|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##NM_001198966|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##AK310433|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887644|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887645|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887646|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887647|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887648|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887649|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##AK300450|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4	0.0	
chr2	87623816	87623989	reg1001016.p1	4.504	+	TSC_hg19_v1_chr2_-_87303546 BC132791 BC132793 BC030543 BC011756 BC013972 BC033072	-320570	-	BC107767 BC109248 BC070296 BC005379 NM_001032392 M93143 NM_002665 BC022294	-374944	-	CR749330 NM_001024457	-479165	+	TSC_hg19_v1_chr2_+_87755000 BC009508 BC073906	131115	+	TSC_hg19_v1_chr2_+_87755060 AK312010	131158	+	BC022294 M93143 NM_002665 BC005379 NM_001032392 BC070296 BC109248 BC107767	423717	+	BC132791|LOC285074|285074|anaphase promoting complex subunit 1 pseudogene##BC132793|LOC285074|285074|anaphase promoting complex subunit 1 pseudogene##BC107767|PLGLB1|5343|plasminogen-like B1##BC109248|PLGLB1|5343|plasminogen-like B1##BC070296|PLGLB1|5343|plasminogen-like B1##BC005379|PLGLB2|5342|plasminogen-like B2##NM_001032392|PLGLB1|5343|plasminogen-like B1##M93143|PLGLB2|5342|plasminogen-like B2##NM_002665|PLGLB2|5342|plasminogen-like B2##BC022294|PLGLB2|5342|plasminogen-like B2##CR749330|RGPD1|400966|RANBP2-like and GRIP domain containing 1##NM_001024457|RGPD1|400966|RANBP2-like and GRIP domain containing 1##BC009508|LINC00152|112597|long intergenic non-protein coding RNA 152##BC073906|LINC00152|112597|long intergenic non-protein coding RNA 152##AK312010|LINC00152|112597|long intergenic non-protein coding RNA 152##BC022294|PLGLB2|5342|plasminogen-like B2##M93143|PLGLB2|5342|plasminogen-like B2##NM_002665|PLGLB2|5342|plasminogen-like B2##BC005379|PLGLB2|5342|plasminogen-like B2##NM_001032392|PLGLB1|5343|plasminogen-like B1##BC070296|PLGLB1|5343|plasminogen-like B1##BC109248|PLGLB1|5343|plasminogen-like B1##BC107767|PLGLB1|5343|plasminogen-like B1	0.0	
chr6	136455535	136455615	reg1001361.p1	4.497	+	AK290582 AB038040 NM_018945 TSC_hg19_v1_chr6_+_136172838 AJ251860 BC070267	-282724	+	BC127001 BC127000 TSC_hg19_v1_chr6_+_135818964 BC040979	-636611	+	TSC_hg19_v1_chr6_-_135818879 AK092262 AX747438 BC094800 AJ459824 AJ459825 AJ606362 NM_001134830 NM_001134831 NM_001134832 NM_017651	-636690	-	TSC_hg19_v1_chr6_-_136571414 AK292303 BC063688 AK125758 NM_001099286 NM_138419	115854	-	BC078160 BC063846 TSC_hg19_v1_chr6_-_136610926 BX649160 BC016682	155335	-	BC132780 BC144281 BC144282 BC144299 TSC_hg19_v1_chr6_-_136610938 BC047887 BC056894 D79986 NM_001077440 NM_001077441 NM_014739	155385	-	AK290582|PDE7B|27115|phosphodiesterase 7B##AB038040|PDE7B|27115|phosphodiesterase 7B##NM_018945|PDE7B|27115|phosphodiesterase 7B##AJ251860|PDE7B|27115|phosphodiesterase 7B##BC070267|PDE7B|27115|phosphodiesterase 7B##BC127001|LINC00271|100131814|long intergenic non-protein coding RNA 271##BC127000|LINC00271|100131814|long intergenic non-protein coding RNA 271##BC040979|LINC00271|100131814|long intergenic non-protein coding RNA 271##AK092262|AHI1|54806|Abelson helper integration site 1##BC094800|AHI1|54806|Abelson helper integration site 1##AJ459824|AHI1|54806|Abelson helper integration site 1##AJ459825|AHI1|54806|Abelson helper integration site 1##AJ606362|AHI1|54806|Abelson helper integration site 1##NM_001134830|AHI1|54806|Abelson helper integration site 1##NM_001134831|AHI1|54806|Abelson helper integration site 1##NM_001134832|AHI1|54806|Abelson helper integration site 1##NM_017651|AHI1|54806|Abelson helper integration site 1##AK292303|FAM54A|113115|family with sequence similarity 54, member A##BC063688|FAM54A|113115|family with sequence similarity 54, member A##AK125758|FAM54A|113115|family with sequence similarity 54, member A##NM_001099286|FAM54A|113115|family with sequence similarity 54, member A##NM_138419|FAM54A|113115|family with sequence similarity 54, member A##BC078160|BCLAF1|9774|BCL2-associated transcription factor 1##BC063846|BCLAF1|9774|BCL2-associated transcription factor 1##BX649160|BCLAF1|9774|BCL2-associated transcription factor 1##BC016682|BCLAF1|9774|BCL2-associated transcription factor 1##BC132780|BCLAF1|9774|BCL2-associated transcription factor 1##BC144281|BCLAF1|9774|BCL2-associated transcription factor 1##BC144282|BCLAF1|9774|BCL2-associated transcription factor 1##BC144299|BCLAF1|9774|BCL2-associated transcription factor 1##BC047887|BCLAF1|9774|BCL2-associated transcription factor 1##BC056894|BCLAF1|9774|BCL2-associated transcription factor 1##D79986|BCLAF1|9774|BCL2-associated transcription factor 1##NM_001077440|BCLAF1|9774|BCL2-associated transcription factor 1##NM_001077441|BCLAF1|9774|BCL2-associated transcription factor 1##NM_014739|BCLAF1|9774|BCL2-associated transcription factor 1	0.0	
chr19	2042270	2042373	reg1001148.p2	4.494	+	TSC_hg19_v1_chr19_-_2042036 AK001730	-271	-	TSC_hg19_v1_chr19_-_2041865 AK092536	-425	-	AL137615 TSC_hg19_v1_chr19_-_2039474 AK024347 AK097012	-2820	-	AL137565 TSC_hg19_v1_chr19_-_2046250	3920	-	BC073140 TSC_hg19_v1_chr19_-_2051243 NM_017572 NM_199054	8912	-	AB061793 TSC_hg19_v1_chr19_-_2085247 BC015049	42922	-	AK001730|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK092536|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AL137615|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK024347|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK097012|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AL137565|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##BC073140|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_017572|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_199054|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AB061793|MOB3A|126308|MOB kinase activator 3A##BC015049|MOB3A|126308|MOB kinase activator 3A	0.946592	denovo_WM_21:-22:0.947
chr3	194393030	194393214	reg1001365.p1	4.494	+	AK002163 TSC_hg19_v1_chr3_-_194392942	-171	-	TSC_hg19_v1_chr3_-_194392921 BC068500	-205	-	TSC_hg19_v1_chr3_-_194392907 BC040119 AM392577 AB463094 AB527453 BC058891 AK225094 AL136897 BC015042	-227	-	NM_018385	83	-	TSC_hg19_v1_chr3_+_194406619 NM_153690	13501	+	BC039689 AK074503 CU691744 TSC_hg19_v1_chr3_+_194407588	14381	+	AK002163|LSG1|55341|large subunit GTPase 1 homolog (S. cerevisiae)##BC068500|LSG1|55341|large subunit GTPase 1 homolog (S. cerevisiae)##BC040119|LSG1|55341|large subunit GTPase 1 homolog (S. cerevisiae)##AM392577|LSG1|55341|large subunit GTPase 1 homolog (S. cerevisiae)##BC058891|LSG1|55341|large subunit GTPase 1 homolog (S. cerevisiae)##AK225094|LSG1|55341|large subunit GTPase 1 homolog (S. cerevisiae)##AL136897|LSG1|55341|large subunit GTPase 1 homolog (S. cerevisiae)##BC015042|LSG1|55341|large subunit GTPase 1 homolog (S. cerevisiae)##NM_018385|LSG1|55341|large subunit GTPase 1 homolog (S. cerevisiae)##NM_153690|FAM43A|131583|family with sequence similarity 43, member A##BC039689|FAM43A|131583|family with sequence similarity 43, member A##AK074503|FAM43A|131583|family with sequence similarity 43, member A	0.0	
chr13	54616745	54616839	reg1001733.p1	4.493	+	AK000683 NM_006418 BC117329 TSC_hg19_v1_chr13_+_53602947 AY358567 HQ258281 AF097021 AK300947	-1013880	+	AF061573 AK293747 AK297652 BC036025 NM_002590 NM_032949 TSC_hg19_v1_chr13_-_53422776	-1194017	-	TSC_hg19_v1_chr13_-_53313956 BC025659 NM_001011705 NM_007015	-1302830	-	AK097615 NM_001130404 NM_001130405 NM_001130406 NM_001130407 NM_198441 BC120931 BC120932	3098324	+	AK097615 NM_001130404 NM_001130405 NM_001130406 NM_001130407 NM_198441 BC120931 BC120932	3104894	+	AK097615 NM_001130404 NM_001130405 NM_001130406 NM_001130407 NM_198441 BC120931 BC120932	3111467	+	AK000683|OLFM4|10562|olfactomedin 4##NM_006418|OLFM4|10562|olfactomedin 4##BC117329|OLFM4|10562|olfactomedin 4##AY358567|OLFM4|10562|olfactomedin 4##HQ258281|OLFM4|10562|olfactomedin 4##AF097021|OLFM4|10562|olfactomedin 4##AK300947|OLFM4|10562|olfactomedin 4##AF061573|PCDH8|5100|protocadherin 8##AK293747|PCDH8|5100|protocadherin 8##AK297652|PCDH8|5100|protocadherin 8##BC036025|PCDH8|5100|protocadherin 8##NM_002590|PCDH8|5100|protocadherin 8##NM_032949|PCDH8|5100|protocadherin 8##BC025659|LECT1|11061|leukocyte cell derived chemotaxin 1##NM_001011705|LECT1|11061|leukocyte cell derived chemotaxin 1##NM_007015|LECT1|11061|leukocyte cell derived chemotaxin 1##AK097615|PRR20A|122183|proline rich 20A##NM_001130404|PRR20B|729233|proline rich 20B##NM_001130405|PRR20C|729240|proline rich 20C##NM_001130406|PRR20D|729246|proline rich 20D##NM_001130407|PRR20E|729250|proline rich 20E##NM_198441|PRR20A|122183|proline rich 20A##BC120931|PRR20A|122183|proline rich 20A##BC120932|PRR20A|122183|proline rich 20A##AK097615|PRR20A|122183|proline rich 20A##NM_001130404|PRR20B|729233|proline rich 20B##NM_001130405|PRR20C|729240|proline rich 20C##NM_001130406|PRR20D|729246|proline rich 20D##NM_001130407|PRR20E|729250|proline rich 20E##NM_198441|PRR20A|122183|proline rich 20A##BC120931|PRR20A|122183|proline rich 20A##BC120932|PRR20A|122183|proline rich 20A##AK097615|PRR20A|122183|proline rich 20A##NM_001130404|PRR20B|729233|proline rich 20B##NM_001130405|PRR20C|729240|proline rich 20C##NM_001130406|PRR20D|729246|proline rich 20D##NM_001130407|PRR20E|729250|proline rich 20E##NM_198441|PRR20A|122183|proline rich 20A##BC120931|PRR20A|122183|proline rich 20A##BC120932|PRR20A|122183|proline rich 20A	0.0	
chr9	44070679	44070782	reg1001161.p1	4.492	+	TSC_hg19_v1_chr9_+_43684876 NM_001201380	-385887	+	NM_001145196	-440001	-	AB462947 AM393131 BC146681 BC140809 BC171793 AL136793 NM_001012419 NM_001012421	-937243	-	TSC_hg19_v1_chr9_+_45441926 BC006438	1371196	+	BC040528 NM_001113541 NM_015667	21438879	-	CR627148 TSC_hg19_v1_chr9_+_66457301 BC039680	22386571	+	NM_001201380|CNTNAP3B|728577|contactin associated protein-like 3B##NM_001145196|FAM75A6|389730|family with sequence similarity 75, member A6##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2##BC006438|LOC100132167|100132167|uncharacterized LOC100132167##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7	0.0	
chr21	32931754	32931848	reg1001186.p2	4.490	+	NM_003253 U16296 TSC_hg19_v1_chr21_-_32931371	-443	-	AB096964 NM_001099219	-521007	-	HQ258726 AB096963 BC130555 BC130557 AJ457065 NM_175858	-677943	-	TSC_hg19_v1_chr21_+_33032005 NM_000454 AK312116 BC001034 X02317 EF151142 AB464254 AY049787 AY450286 BT006676 CR450355 CR541742 CU674512 EF143990	100206	+	AB032998 AK025748 AL117417 TSC_hg19_v1_chr21_-_33074136	142317	-	AL834304 BC052286 BC064990 TSC_hg19_v1_chr21_-_33104271 AK057840 AK308406	172471	-	NM_003253|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##U16296|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##AB096964|KRTAP19-8|728299|keratin associated protein 19-8##NM_001099219|KRTAP19-8|728299|keratin associated protein 19-8##AB096963|KRTAP11-1|337880|keratin associated protein 11-1##BC130555|KRTAP11-1|337880|keratin associated protein 11-1##BC130557|KRTAP11-1|337880|keratin associated protein 11-1##AJ457065|KRTAP11-1|337880|keratin associated protein 11-1##NM_175858|KRTAP11-1|337880|keratin associated protein 11-1##NM_000454|SOD1|6647|superoxide dismutase 1, soluble##AK312116|SOD1|6647|superoxide dismutase 1, soluble##BC001034|SOD1|6647|superoxide dismutase 1, soluble##X02317|SOD1|6647|superoxide dismutase 1, soluble##EF151142|SOD1|6647|superoxide dismutase 1, soluble##AY049787|SOD1|6647|superoxide dismutase 1, soluble##AY450286|SOD1|6647|superoxide dismutase 1, soluble##BT006676|SOD1|6647|superoxide dismutase 1, soluble##CR450355|SOD1|6647|superoxide dismutase 1, soluble##CR541742|SOD1|6647|superoxide dismutase 1, soluble##EF143990|SOD1|6647|superoxide dismutase 1, soluble##AB032998|SCAF4|57466|SR-related CTD-associated factor 4##AK025748|SCAF4|57466|SR-related CTD-associated factor 4##AL117417|SCAF4|57466|SR-related CTD-associated factor 4##AL834304|SCAF4|57466|SR-related CTD-associated factor 4##BC052286|SCAF4|57466|SR-related CTD-associated factor 4##BC064990|SCAF4|57466|SR-related CTD-associated factor 4##AK057840|SCAF4|57466|SR-related CTD-associated factor 4##AK308406|SCAF4|57466|SR-related CTD-associated factor 4	0.020487	
chr10	131385282	131385411	reg1001345.p1	4.488	+	TSC_hg19_v1_chr10_+_131265507 BC000824	-119832	+	NM_002412 TSC_hg19_v1_chr10_+_131265475 AK293593 M29971	-119875	+	NM_001145966 NM_002417 X65550 X65551 TSC_hg19_v1_chr10_-_129924589	-1460818	-	AL832828 AB527459 HQ258299 BC126130 BC130479 NM_001005463	376707	-	TSC_hg19_v1_chr10_-_131762539 AK097335	377179	-	TSC_hg19_v1_chr10_-_131909090 EU250747 AK094118	523735	-	BC000824|MGMT|4255|O-6-methylguanine-DNA methyltransferase##NM_002412|MGMT|4255|O-6-methylguanine-DNA methyltransferase##AK293593|MGMT|4255|O-6-methylguanine-DNA methyltransferase##M29971|MGMT|4255|O-6-methylguanine-DNA methyltransferase##NM_001145966|MKI67|4288|antigen identified by monoclonal antibody Ki-67##NM_002417|MKI67|4288|antigen identified by monoclonal antibody Ki-67##X65550|MKI67|4288|antigen identified by monoclonal antibody Ki-67##X65551|MKI67|4288|antigen identified by monoclonal antibody Ki-67##AL832828|EBF3|253738|early B-cell factor 3##HQ258299|EBF3|253738|early B-cell factor 3##BC126130|EBF3|253738|early B-cell factor 3##BC130479|EBF3|253738|early B-cell factor 3##NM_001005463|EBF3|253738|early B-cell factor 3##AK097335|EBF3|253738|early B-cell factor 3##EU250747|LOC387723|387723|uncharacterized LOC387723##AK094118|LOC387723|387723|uncharacterized LOC387723	0.0	
chr5	42716245	42716315	reg1001271.p2	4.484	+	BC136496 NM_001242460 NM_001242461 NM_001242462	-150316	+	NM_001242406 Z11850	-150718	+	NM_001242405	-166099	+	AK303469 NM_001134848 AK127368 BC015985 BC039102 TSC_hg19_v1_chr5_+_42756958	40658	+	Z11793 BC040075 BC046152 BC058919 AK225801 AL833145 BC005244 BC015875 BC030009 TSC_hg19_v1_chr5_-_42811995 NM_001085486 NM_001093726 NM_005410	95711	-	TSC_hg19_v1_chr5_-_42993436 AK056817	277166	-	BC136496|GHR|2690|growth hormone receptor##NM_001242460|GHR|2690|growth hormone receptor##NM_001242461|GHR|2690|growth hormone receptor##NM_001242462|GHR|2690|growth hormone receptor##NM_001242406|GHR|2690|growth hormone receptor##Z11850|GHR|2690|growth hormone receptor##NM_001242405|GHR|2690|growth hormone receptor##AK303469|CCDC152|100129792|coiled-coil domain containing 152##NM_001134848|CCDC152|100129792|coiled-coil domain containing 152##AK127368|CCDC152|100129792|coiled-coil domain containing 152##BC015985|CCDC152|100129792|coiled-coil domain containing 152##BC039102|CCDC152|100129792|coiled-coil domain containing 152##Z11793|SEPP1|6414|selenoprotein P, plasma, 1##BC040075|SEPP1|6414|selenoprotein P, plasma, 1##BC046152|SEPP1|6414|selenoprotein P, plasma, 1##BC058919|SEPP1|6414|selenoprotein P, plasma, 1##AK225801|SEPP1|6414|selenoprotein P, plasma, 1##AL833145|SEPP1|6414|selenoprotein P, plasma, 1##BC005244|SEPP1|6414|selenoprotein P, plasma, 1##BC015875|SEPP1|6414|selenoprotein P, plasma, 1##BC030009|SEPP1|6414|selenoprotein P, plasma, 1##NM_001085486|SEPP1|6414|selenoprotein P, plasma, 1##NM_001093726|SEPP1|6414|selenoprotein P, plasma, 1##NM_005410|SEPP1|6414|selenoprotein P, plasma, 1##AK056817|FLJ32255|643977|uncharacterized LOC643977	0.0	
chr19	58962884	58962990	reg1001289.p2	4.481	+	AK057460 NM_003433	-11349	-	BC017651 TSC_hg19_v1_chr19_+_58920143 AK298929	-42807	+	TSC_hg19_v1_chr19_+_58920045 AK290068 BC033149 NM_173548	-42890	+	TSC_hg19_v1_chr19_+_58962982 AK127750 NM_207395 BC140881 BC140882 BX648711 AK131452	58	+	TSC_hg19_v1_chr19_+_58978445 NM_014347 BC007717 AF060503	15491	+	AK092341 TSC_hg19_v1_chr19_+_58978664	15730	+	AK057460|ZNF132|7691|zinc finger protein 132##NM_003433|ZNF132|7691|zinc finger protein 132##BC017651|ZNF584|201514|zinc finger protein 584##AK298929|ZNF584|201514|zinc finger protein 584##AK290068|ZNF584|201514|zinc finger protein 584##BC033149|ZNF584|201514|zinc finger protein 584##NM_173548|ZNF584|201514|zinc finger protein 584##AK127750|ZNF324B|388569|zinc finger protein 324B##NM_207395|ZNF324B|388569|zinc finger protein 324B##BC140881|ZNF324B|388569|zinc finger protein 324B##BC140882|ZNF324B|388569|zinc finger protein 324B##BX648711|ZNF324B|388569|zinc finger protein 324B##AK131452|ZNF324B|388569|zinc finger protein 324B##NM_014347|ZNF324|25799|zinc finger protein 324##BC007717|ZNF324|25799|zinc finger protein 324##AF060503|ZNF324|25799|zinc finger protein 324##AK092341|ZNF324|25799|zinc finger protein 324	0.0	
chr15	43882403	43882516	reg1001089.p1	4.480	+	BC050263 BX538022 BX647814 AK307438 NM_001130858 NM_001130859 NM_001190214	-41	-	AF543190 AF502586 AF502588 NM_014659 AB002375 AF502587 AF502589	-5393	-	NM_002373 TSC_hg19_v1_chr15_+_43809825 AK291052 BC055312 BC094702 BC010470	-72630	+	NM_020990 AK311698 AK316124	2813	+	AK308370 BC129931 NM_153700	28519	-	BC028728 NM_054020 NM_172095 NM_172097 AK122607 BC064387 BX648099 TSC_hg19_v1_chr15_-_43941088	58603	-	BC050263|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1##BX538022|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1##BX647814|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1##AK307438|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1##NM_001130858|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1##NM_001130859|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1##NM_001190214|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1##AF543190|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1##AF502586|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1##AF502588|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1##NM_014659|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1##AB002375|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1##AF502587|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1##AF502589|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1##NM_002373|MAP1A|4130|microtubule-associated protein 1A##AK291052|MAP1A|4130|microtubule-associated protein 1A##BC055312|MAP1A|4130|microtubule-associated protein 1A##BC094702|MAP1A|4130|microtubule-associated protein 1A##BC010470|MAP1A|4130|microtubule-associated protein 1A##NM_020990|CKMT1B|1159|creatine kinase, mitochondrial 1B##AK316124|CKMT1A|548596|creatine kinase, mitochondrial 1A##AK308370|STRC|161497|stereocilin##BC129931|STRC|161497|stereocilin##NM_153700|STRC|161497|stereocilin##BC028728|CATSPER2|117155|cation channel, sperm associated 2##NM_054020|CATSPER2|117155|cation channel, sperm associated 2##NM_172095|CATSPER2|117155|cation channel, sperm associated 2##NM_172097|CATSPER2|117155|cation channel, sperm associated 2##AK122607|CATSPER2|117155|cation channel, sperm associated 2##BC064387|CATSPER2|117155|cation channel, sperm associated 2##BX648099|CATSPER2|117155|cation channel, sperm associated 2	0.325659	denovo_WM_21:0:0.274
chr3	184468854	184468957	reg1001791.p1	4.480	+	AB590456 CU679591 AF320910 TSC_hg19_v1_chr3_-_184429853 AF295378 BC010056 NM_022149	-39142	-	TSC_hg19_v1_chr3_+_184279572 NM_004443 BC052968	-189323	+	AF209928 AF209929 AF209930 AF283325 NM_003741 AY358926 BC112345 AB208947 AK074147 AK293456 AK295632	-370865	+	TSC_hg19_v1_chr3_+_184529961 NM_001009921 NM_015303 AK056661 AK292423 BX647915	61018	+	TSC_hg19_v1_chr3_+_184529983 BC140768	61090	+	TSC_hg19_v1_chr3_-_184870632 BC137178 BC137179 BC150565	401748	-	AF320910|MAGEF1|64110|melanoma antigen family F, 1##AF295378|MAGEF1|64110|melanoma antigen family F, 1##BC010056|MAGEF1|64110|melanoma antigen family F, 1##NM_022149|MAGEF1|64110|melanoma antigen family F, 1##NM_004443|EPHB3|2049|EPH receptor B3##BC052968|EPHB3|2049|EPH receptor B3##AF209928|CHRD|8646|chordin##AF209929|CHRD|8646|chordin##AF209930|CHRD|8646|chordin##AF283325|CHRD|8646|chordin##NM_003741|CHRD|8646|chordin##AY358926|CHRD|8646|chordin##BC112345|CHRD|8646|chordin##AB208947|CHRD|8646|chordin##AK074147|CHRD|8646|chordin##AK293456|CHRD|8646|chordin##AK295632|CHRD|8646|chordin##NM_001009921|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)##NM_015303|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)##AK056661|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)##AK292423|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)##BX647915|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)##BC140768|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)##BC137178|C3orf70|285382|chromosome 3 open reading frame 70##BC137179|C3orf70|285382|chromosome 3 open reading frame 70##BC150565|C3orf70|285382|chromosome 3 open reading frame 70	0.0	
chr1	45957113	45957292	reg1000293.p2	4.479	+	TSC_hg19_v1_chr1_-_45956836 BX648441 AK027573 AK294172 BC022194 AB057597 AJ132545 AK299269 NM_007170 AK302494	-369	-	TSC_hg19_v1_chr1_+_45805883 AK298162 AK093320 BC009364 CU679325 CR457320	-151302	+	AB032924 AB032925 AB032926 AB025227 NM_001048174 AB032927 AB032928 AB032929 NM_001048172 NM_001048173 CU678424 AB590565 AB032920 AB032921 AB032922 AB032923 BC003178 AK293830 NM_001048171 NM_001128425 NM_012222	-151329	-	AK098537 NM_015506 TSC_hg19_v1_chr1_+_45965990 AL080062 BC006122	8737	+	X67951 L19184 TSC_hg19_v1_chr1_-_45987557 AK311898 BC007063 AK131049 BC021683 NM_002574 NM_181696 NM_181697	30376	-	NM_001202431	31359	-	BX648441|TESK2|10420|testis-specific kinase 2##AK027573|TESK2|10420|testis-specific kinase 2##AK294172|TESK2|10420|testis-specific kinase 2##BC022194|TESK2|10420|testis-specific kinase 2##AB057597|TESK2|10420|testis-specific kinase 2##AJ132545|TESK2|10420|testis-specific kinase 2##AK299269|TESK2|10420|testis-specific kinase 2##NM_007170|TESK2|10420|testis-specific kinase 2##AK302494|TESK2|10420|testis-specific kinase 2##AK298162|TOE1|114034|target of EGR1, member 1 (nuclear)##AK093320|TOE1|114034|target of EGR1, member 1 (nuclear)##BC009364|TOE1|114034|target of EGR1, member 1 (nuclear)##CR457320|TOE1|114034|target of EGR1, member 1 (nuclear)##AB032924|MUTYH|4595|mutY homolog (E. coli)##AB032925|MUTYH|4595|mutY homolog (E. coli)##AB032926|MUTYH|4595|mutY homolog (E. coli)##AB025227|MUTYH|4595|mutY homolog (E. coli)##NM_001048174|MUTYH|4595|mutY homolog (E. coli)##AB032927|MUTYH|4595|mutY homolog (E. coli)##AB032928|MUTYH|4595|mutY homolog (E. coli)##AB032929|MUTYH|4595|mutY homolog (E. coli)##NM_001048172|MUTYH|4595|mutY homolog (E. coli)##NM_001048173|MUTYH|4595|mutY homolog (E. coli)##AB032920|MUTYH|4595|mutY homolog (E. coli)##AB032921|MUTYH|4595|mutY homolog (E. coli)##AB032922|MUTYH|4595|mutY homolog (E. coli)##AB032923|MUTYH|4595|mutY homolog (E. coli)##BC003178|MUTYH|4595|mutY homolog (E. coli)##AK293830|MUTYH|4595|mutY homolog (E. coli)##NM_001048171|MUTYH|4595|mutY homolog (E. coli)##NM_001128425|MUTYH|4595|mutY homolog (E. coli)##NM_012222|MUTYH|4595|mutY homolog (E. coli)##AK098537|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##NM_015506|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##AL080062|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##BC006122|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##X67951|PRDX1|5052|peroxiredoxin 1##L19184|PRDX1|5052|peroxiredoxin 1##AK311898|PRDX1|5052|peroxiredoxin 1##BC007063|PRDX1|5052|peroxiredoxin 1##AK131049|PRDX1|5052|peroxiredoxin 1##BC021683|PRDX1|5052|peroxiredoxin 1##NM_002574|PRDX1|5052|peroxiredoxin 1##NM_181696|PRDX1|5052|peroxiredoxin 1##NM_181697|PRDX1|5052|peroxiredoxin 1##NM_001202431|PRDX1|5052|peroxiredoxin 1	1.616302	denovo_WM_21:6:0.786	denovo_WM_21:50:0.830
chr17	61502889	61502960	reg1000896.p1	4.475	+	BC144357 TSC_hg19_v1_chr17_+_61271368	-231563	+	NM_025185	-416027	+	AK122947 AK093076 AX747906 BX648705 NM_152598	-617247	-	BC091485 NM_001017917	15266	-	AK095244 NM_001017916 TSC_hg19_v1_chr17_-_61523715 AK301541 AK294403 BC002976 AK303177 AK316606 NM_001915	20712	-	TSC_hg19_v1_chr17_+_61554421 AK296566 AK309514 NM_000789 AK300516 AB208971 J04144	51504	+	BC144357|TANC2|26115|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2##NM_025185|TANC2|26115|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2##AK122947|MARCH10|162333|membrane-associated ring finger (C3HC4) 10##AK093076|MARCH10|162333|membrane-associated ring finger (C3HC4) 10##BX648705|MARCH10|162333|membrane-associated ring finger (C3HC4) 10##NM_152598|MARCH10|162333|membrane-associated ring finger (C3HC4) 10##BC091485|CYB561|1534|cytochrome b-561##NM_001017917|CYB561|1534|cytochrome b-561##AK095244|CYB561|1534|cytochrome b-561##NM_001017916|CYB561|1534|cytochrome b-561##AK301541|CYB561|1534|cytochrome b-561##AK294403|CYB561|1534|cytochrome b-561##BC002976|CYB561|1534|cytochrome b-561##AK303177|CYB561|1534|cytochrome b-561##AK316606|CYB561|1534|cytochrome b-561##NM_001915|CYB561|1534|cytochrome b-561##AK296566|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##AK309514|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##NM_000789|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##AK300516|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##AB208971|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##J04144|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	0.018375	
chr11	67888880	67888986	reg1001130.p1	4.473	+	NM_001277 NM_212469 TSC_hg19_v1_chr11_-_67888859	-45	-	D10704 BC036471 TSC_hg19_v1_chr11_-_67888844	-176	-	AF025374 NM_006053	-78487	+	TSC_hg19_v1_chr11_-_67981112 AF264782 BC002522 BC065287 BC087834 NM_016028 NM_017635 BC108304 AK314336 AK299201	92046	-	TSC_hg19_v1_chr11_-_68039418 AF264781	150453	-	TSC_hg19_v1_chr11_-_68039453 NM_022338	150525	-	NM_001277|CHKA|1119|choline kinase alpha##NM_212469|CHKA|1119|choline kinase alpha##D10704|CHKA|1119|choline kinase alpha##BC036471|CHKA|1119|choline kinase alpha##AF025374|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3##NM_006053|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3##AF264782|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC002522|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC065287|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC087834|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##NM_016028|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##NM_017635|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC108304|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##AK314336|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##AK299201|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##AF264781|C11orf24|53838|chromosome 11 open reading frame 24##NM_022338|C11orf24|53838|chromosome 11 open reading frame 24	1.566807	denovo_WM_21:-18:0.786	denovo_WM_21:45:0.781
chr4	127166013	127166106	reg1001490.p1	4.467	+	NM_024582	-928493	+	TSC_hg19_v1_chr4_-_125633888 AK291068 AK295135 NM_001167882 NM_020337	-1532245	-	AK026960 BC063856 NM_005841	-2845386	+	TSC_hg19_v1_chr4_+_128554111 NM_015693 AK291481 BC051698 AB033110 BC130611 BC144182 HQ258681 CU690824	1388080	+	TSC_hg19_v1_chr4_+_128651573 NM_031291 AL136857 AY550240 BC022032 AB528294 AM393262 CU692468 AJ863129	1485550	+	TSC_hg19_v1_chr4_+_128703445 BC040560 NM_014278	1537374	+	NM_024582|FAT4|79633|FAT tumor suppressor homolog 4 (Drosophila)##AK291068|ANKRD50|57182|ankyrin repeat domain 50##AK295135|ANKRD50|57182|ankyrin repeat domain 50##NM_001167882|ANKRD50|57182|ankyrin repeat domain 50##NM_020337|ANKRD50|57182|ankyrin repeat domain 50##AK026960|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##BC063856|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##NM_005841|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##NM_015693|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##AK291481|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC051698|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##AB033110|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC130611|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC144182|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##HQ258681|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##NM_031291|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AL136857|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AY550240|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##BC022032|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AM393262|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AJ863129|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##BC040560|HSPA4L|22824|heat shock 70kDa protein 4-like##NM_014278|HSPA4L|22824|heat shock 70kDa protein 4-like	0.0	
chr17	40115088	40115217	reg1001230.p1	4.466	+	BC025390 TSC_hg19_v1_chr17_+_40086881 NM_031421 AL136760 BC067297 AK055498 AM393695 AB463310 CU688280 CU692988	-28227	+	TSC_hg19_v1_chr17_-_40075239 BC006195 NM_001096 NM_198830 AK295675 AK312315	-39887	-	TSC_hg19_v1_chr17_-_40075237 AK304802	-39919	-	TSC_hg19_v1_chr17_+_40118778 NM_033133	3587	+	TSC_hg19_v1_chr17_+_40118815 BC028040 BC006392 AK295351 AK026876 AK097833 AK098384 AK294179 BC001362 BC011046	3684	+	TSC_hg19_v1_chr17_+_40119669 AK308696	4574	+	BC025390|TTC25|83538|tetratricopeptide repeat domain 25##NM_031421|TTC25|83538|tetratricopeptide repeat domain 25##AL136760|TTC25|83538|tetratricopeptide repeat domain 25##BC067297|TTC25|83538|tetratricopeptide repeat domain 25##AK055498|TTC25|83538|tetratricopeptide repeat domain 25##AM393695|TTC25|83538|tetratricopeptide repeat domain 25##BC006195|ACLY|47|ATP citrate lyase##NM_001096|ACLY|47|ATP citrate lyase##NM_198830|ACLY|47|ATP citrate lyase##AK295675|ACLY|47|ATP citrate lyase##AK312315|ACLY|47|ATP citrate lyase##AK304802|ACLY|47|ATP citrate lyase##NM_033133|CNP|1267|2',3'-cyclic nucleotide 3' phosphodiesterase##BC028040|CNP|1267|2',3'-cyclic nucleotide 3' phosphodiesterase##BC006392|CNP|1267|2',3'-cyclic nucleotide 3' phosphodiesterase##AK295351|CNP|1267|2',3'-cyclic nucleotide 3' phosphodiesterase##AK026876|CNP|1267|2',3'-cyclic nucleotide 3' phosphodiesterase##AK097833|CNP|1267|2',3'-cyclic nucleotide 3' phosphodiesterase##AK098384|CNP|1267|2',3'-cyclic nucleotide 3' phosphodiesterase##AK294179|CNP|1267|2',3'-cyclic nucleotide 3' phosphodiesterase##BC001362|CNP|1267|2',3'-cyclic nucleotide 3' phosphodiesterase##BC011046|CNP|1267|2',3'-cyclic nucleotide 3' phosphodiesterase	0.0	
chr13	32525914	32525985	reg1001831.p2	4.465	+	TSC_hg19_v1_chr13_+_32420857 BC021729	-105047	+	NM_001166058 NM_130806 AF453828 AB527208 AY899851	-212236	+	AK291273 TSC_hg19_v1_chr13_+_31774136 BC068595 AB101481 AY190526	-751739	+	AL049784 NM_023037 U50534 TSC_hg19_v1_chr13_+_32605446	79492	+	BC146956 BC146965 NM_001136571	360140	-	TSC_hg19_v1_chr13_+_32889621 NM_000059 U43746 BC026160 BC047568	363668	+	BC021729|EEF1DP3|196549|eukaryotic translation elongation factor 1 delta pseudogene 3##NM_001166058|RXFP2|122042|relaxin/insulin-like family peptide receptor 2##NM_130806|RXFP2|122042|relaxin/insulin-like family peptide receptor 2##AF453828|RXFP2|122042|relaxin/insulin-like family peptide receptor 2##AY899851|RXFP2|122042|relaxin/insulin-like family peptide receptor 2##AK291273|B3GALTL|145173|beta 1,3-galactosyltransferase-like##BC068595|B3GALTL|145173|beta 1,3-galactosyltransferase-like##AB101481|B3GALTL|145173|beta 1,3-galactosyltransferase-like##AY190526|B3GALTL|145173|beta 1,3-galactosyltransferase-like##AL049784|FRY|10129|furry homolog (Drosophila)##NM_023037|FRY|10129|furry homolog (Drosophila)##U50534|FRY|10129|furry homolog (Drosophila)##BC146956|ZAR1L|646799|zygote arrest 1-like##BC146965|ZAR1L|646799|zygote arrest 1-like##NM_001136571|ZAR1L|646799|zygote arrest 1-like##NM_000059|BRCA2|675|breast cancer 2, early onset##U43746|BRCA2|675|breast cancer 2, early onset##BC026160|BRCA2|675|breast cancer 2, early onset##BC047568|BRCA2|675|breast cancer 2, early onset	0.08985	
chr17	8093533	8093648	reg1001301.p1	4.465	+	TSC_hg19_v1_chr17_-_8093499 NM_017622	-63	-	BC009261 AK000021 AK222506 TSC_hg19_v1_chr17_-_8093462 BC018880 BC070272	-186	-	CU687070 BC006292 TSC_hg19_v1_chr17_-_8079699 AK127891 AK315666 AK027813 BC119730 BC119731 BC127649 BC127650 AY358525 BC070231 NM_032354 NM_183065	-13930	-	BC009751 AB011446 BC080581 AB011450 AF004022 AF015254 BC000442 NM_004217 TSC_hg19_v1_chr17_-_8113894 AK314889 AK297976 BC013300	20293	-	DQ451688 FJ790670 AL831955 TSC_hg19_v1_chr17_-_8151371 AK091077 AX746768 BC111783	57772	-	TSC_hg19_v1_chr17_-_8151373 NM_025099	57802	-	NM_017622|C17orf59|54785|chromosome 17 open reading frame 59##BC009261|C17orf59|54785|chromosome 17 open reading frame 59##AK000021|C17orf59|54785|chromosome 17 open reading frame 59##AK222506|C17orf59|54785|chromosome 17 open reading frame 59##BC018880|C17orf59|54785|chromosome 17 open reading frame 59##BC070272|C17orf59|54785|chromosome 17 open reading frame 59##BC006292|TMEM107|84314|transmembrane protein 107##AK315666|TMEM107|84314|transmembrane protein 107##AK027813|TMEM107|84314|transmembrane protein 107##BC119730|TMEM107|84314|transmembrane protein 107##BC119731|TMEM107|84314|transmembrane protein 107##BC127649|TMEM107|84314|transmembrane protein 107##BC127650|TMEM107|84314|transmembrane protein 107##AY358525|TMEM107|84314|transmembrane protein 107##BC070231|TMEM107|84314|transmembrane protein 107##NM_032354|TMEM107|84314|transmembrane protein 107##NM_183065|TMEM107|84314|transmembrane protein 107##BC009751|AURKB|9212|aurora kinase B##AB011446|AURKB|9212|aurora kinase B##BC080581|AURKB|9212|aurora kinase B##AB011450|AURKB|9212|aurora kinase B##AF004022|AURKB|9212|aurora kinase B##AF015254|AURKB|9212|aurora kinase B##BC000442|AURKB|9212|aurora kinase B##NM_004217|AURKB|9212|aurora kinase B##AK314889|AURKB|9212|aurora kinase B##AK297976|AURKB|9212|aurora kinase B##BC013300|AURKB|9212|aurora kinase B##DQ451688|CTC1|80169|CTS telomere maintenance complex component 1##FJ790670|CTC1|80169|CTS telomere maintenance complex component 1##AL831955|CTC1|80169|CTS telomere maintenance complex component 1##AK091077|CTC1|80169|CTS telomere maintenance complex component 1##BC111783|CTC1|80169|CTS telomere maintenance complex component 1##NM_025099|CTC1|80169|CTS telomere maintenance complex component 1	0.88499	denovo_WM_21:4:0.885
chrX	53123137	53123243	reg1000910.p1	4.462	+	TSC_hg19_v1_chrX_+_53111548 NM_022117 AK131220 AK292462 AY040871 AF273046 BC024270 AL713652 AB463325 AM392716 AF254794	-11548	+	BC009861 NM_018969	-44685	+	BC067819 NM_001242489 NM_001242490 NM_001242492 NM_001242493 NM_001242494 NM_001242495 NM_001242496 NM_001242497 NM_014138	-98544	-	TSC_hg19_v1_chrX_+_53123332 EF565109	216	+	BC054499 BC047751 TSC_hg19_v1_chrX_-_53254393 AK308077 AK304732	131197	-	L25270 NM_001146702 NM_004187 TSC_hg19_v1_chrX_-_53254729	131476	-	NM_022117|TSPYL2|64061|TSPY-like 2##AK131220|TSPYL2|64061|TSPY-like 2##AK292462|TSPYL2|64061|TSPY-like 2##AY040871|TSPYL2|64061|TSPY-like 2##AF273046|TSPYL2|64061|TSPY-like 2##BC024270|TSPYL2|64061|TSPY-like 2##AL713652|TSPYL2|64061|TSPY-like 2##AM392716|TSPYL2|64061|TSPY-like 2##AF254794|TSPYL2|64061|TSPY-like 2##BC009861|GPR173|54328|G protein-coupled receptor 173##NM_018969|GPR173|54328|G protein-coupled receptor 173##BC067819|FAM156A|29057|family with sequence similarity 156, member A##NM_001242489|FAM156A|29057|family with sequence similarity 156, member A##NM_001242490|FAM156A|29057|family with sequence similarity 156, member A##NM_001242492|FAM156A|29057|family with sequence similarity 156, member A##NM_001242493|FAM156A|29057|family with sequence similarity 156, member A##NM_001242494|FAM156A|29057|family with sequence similarity 156, member A##NM_001242495|FAM156A|29057|family with sequence similarity 156, member A##NM_001242496|FAM156A|29057|family with sequence similarity 156, member A##NM_001242497|FAM156A|29057|family with sequence similarity 156, member A##NM_014138|FAM156A|29057|family with sequence similarity 156, member A##EF565109|LOC100132984|100132984|uncharacterized LOC100132984##BC054499|KDM5C|8242|lysine (K)-specific demethylase 5C##BC047751|KDM5C|8242|lysine (K)-specific demethylase 5C##AK308077|KDM5C|8242|lysine (K)-specific demethylase 5C##AK304732|KDM5C|8242|lysine (K)-specific demethylase 5C##L25270|KDM5C|8242|lysine (K)-specific demethylase 5C##NM_001146702|KDM5C|8242|lysine (K)-specific demethylase 5C##NM_004187|KDM5C|8242|lysine (K)-specific demethylase 5C	0.96011	denovo_WM_21:0:0.947
chr4	148538411	148538532	reg1001799.p1	4.456	+	TSC_hg19_v1_chr4_+_148402244 AK312812 BC022511 AK304451 S45956	-136161	+	TSC_hg19_v1_chr4_+_148402117 D90348 S57498 X61950	-136348	+	NM_001166055 NM_001957 AK315931 TSC_hg19_v1_chr4_+_148402083	-136396	+	TSC_hg19_v1_chr4_+_148538547 BC046128 NM_018241	62	+	TSC_hg19_v1_chr4_+_148538568 AK001708	135	+	BC021250 TSC_hg19_v1_chr4_-_148605287 AK096703 BC064403 NM_138364 AK292904	66793	-	AK312812|EDNRA|1909|endothelin receptor type A##BC022511|EDNRA|1909|endothelin receptor type A##AK304451|EDNRA|1909|endothelin receptor type A##S45956|EDNRA|1909|endothelin receptor type A##D90348|EDNRA|1909|endothelin receptor type A##S57498|EDNRA|1909|endothelin receptor type A##X61950|EDNRA|1909|endothelin receptor type A##NM_001166055|EDNRA|1909|endothelin receptor type A##NM_001957|EDNRA|1909|endothelin receptor type A##AK315931|EDNRA|1909|endothelin receptor type A##BC046128|TMEM184C|55751|transmembrane protein 184C##NM_018241|TMEM184C|55751|transmembrane protein 184C##AK001708|TMEM184C|55751|transmembrane protein 184C##BC021250|PRMT10|90826|protein arginine methyltransferase 10 (putative)##AK096703|PRMT10|90826|protein arginine methyltransferase 10 (putative)##BC064403|PRMT10|90826|protein arginine methyltransferase 10 (putative)##NM_138364|PRMT10|90826|protein arginine methyltransferase 10 (putative)##AK292904|PRMT10|90826|protein arginine methyltransferase 10 (putative)	0.980873	denovo_WM_21:-29:0.981
chr2	234763206	234763346	reg1001223.p1	4.455	+	TSC_hg19_v1_chr2_-_234763182 AB101211 NM_018410	-80	-	AB162218 BC001940 TSC_hg19_v1_chr2_-_234763177 AK303109 AK074809 AK301643	-113	-	AK290834 TSC_hg19_v1_chr2_+_234668915 BC128414 BC128415 M57899 NM_000463 AY435136 DQ364247	-94353	+	TSC_hg19_v1_chr2_-_234777018 AK316372	13735	-	TSC_hg19_v1_chr2_-_234777033 AK301707	13761	-	AY090109 NM_024080 BC126342 BC143819	62769	+	AB101211|HJURP|55355|Holliday junction recognition protein##NM_018410|HJURP|55355|Holliday junction recognition protein##AB162218|HJURP|55355|Holliday junction recognition protein##BC001940|HJURP|55355|Holliday junction recognition protein##AK303109|HJURP|55355|Holliday junction recognition protein##AK074809|HJURP|55355|Holliday junction recognition protein##AK301643|HJURP|55355|Holliday junction recognition protein##AK290834|UGT1A1|54658|UDP glucuronosyltransferase 1 family, polypeptide A1##BC128414|UGT1A1|54658|UDP glucuronosyltransferase 1 family, polypeptide A1##BC128415|UGT1A1|54658|UDP glucuronosyltransferase 1 family, polypeptide A1##M57899|UGT1A1|54658|UDP glucuronosyltransferase 1 family, polypeptide A1##NM_000463|UGT1A1|54658|UDP glucuronosyltransferase 1 family, polypeptide A1##AY435136|UGT1A1|54658|UDP glucuronosyltransferase 1 family, polypeptide A1##DQ364247|UGT1A1|54658|UDP glucuronosyltransferase 1 family, polypeptide A1##AK316372|MSL3P1|151507|male-specific lethal 3 homolog (Drosophila) pseudogene 1##AK301707|MSL3P1|151507|male-specific lethal 3 homolog (Drosophila) pseudogene 1##AY090109|TRPM8|79054|transient receptor potential cation channel, subfamily M, member 8##NM_024080|TRPM8|79054|transient receptor potential cation channel, subfamily M, member 8##BC126342|TRPM8|79054|transient receptor potential cation channel, subfamily M, member 8##BC143819|TRPM8|79054|transient receptor potential cation channel, subfamily M, member 8	0.843976	denovo_WM_21:-26:0.830
chr6	26195654	26195759	reg1001529.p1	4.454	+	AB528805 BC128104 BC128105 BC143045 NM_003539 TSC_hg19_v1_chr6_-_26189339	-6384	-	BC101748 BC101750 EU446967 NM_003523	-11716	+	TSC_hg19_v1_chr6_+_26158349 NM_021063 NM_138720 AK292712 BC002842 AJ223353 AB463734 BC096122	-37342	+	CU689152 DQ892795 DQ896042 AB590086 BC033095 TSC_hg19_v1_chr6_-_26197515	1790	-	BC031333 NM_003530 BC128035 CR541970 CR541999 EU446963 NM_021065 BC093807 BC093809 AK312127 AK316611	3773	-	TSC_hg19_v1_chr6_+_26199747 BC056264 BC096120 BC096123 NM_003522	4043	+	BC128104|HIST1H4D|8360|histone cluster 1, H4d##BC143045|HIST1H4D|8360|histone cluster 1, H4d##NM_003539|HIST1H4D|8360|histone cluster 1, H4d##BC101748|HIST1H2BE|8344|histone cluster 1, H2be##BC101750|HIST1H2BE|8344|histone cluster 1, H2be##EU446967|HIST1H2BE|8344|histone cluster 1, H2be##NM_003523|HIST1H2BE|8344|histone cluster 1, H2be##NM_021063|HIST1H2BD|3017|histone cluster 1, H2bd##NM_138720|HIST1H2BD|3017|histone cluster 1, H2bd##AK292712|HIST1H2BD|3017|histone cluster 1, H2bd##BC002842|HIST1H2BD|3017|histone cluster 1, H2bd##AJ223353|HIST1H2BD|3017|histone cluster 1, H2bd##BC096122|HIST1H2BD|3017|histone cluster 1, H2bd##DQ892795|HIST1H3D|8351|histone cluster 1, H3d##DQ896042|HIST1H3D|8351|histone cluster 1, H3d##BC031333|HIST1H3D|8351|histone cluster 1, H3d##NM_003530|HIST1H3D|8351|histone cluster 1, H3d##BC128035|HIST1H2AD|3013|histone cluster 1, H2ad##CR541970|HIST1H2AD|3013|histone cluster 1, H2ad##CR541999|HIST1H2AD|3013|histone cluster 1, H2ad##EU446963|HIST1H2AD|3013|histone cluster 1, H2ad##NM_021065|HIST1H2AD|3013|histone cluster 1, H2ad##BC093807|HIST1H2AD|3013|histone cluster 1, H2ad##BC093809|HIST1H2AD|3013|histone cluster 1, H2ad##AK312127|HIST1H2AD|3013|histone cluster 1, H2ad##AK316611|HIST1H3D|8351|histone cluster 1, H3d##BC056264|HIST1H2BF|8343|histone cluster 1, H2bf##BC096120|HIST1H2BF|8343|histone cluster 1, H2bf##BC096123|HIST1H2BF|8343|histone cluster 1, H2bf##NM_003522|HIST1H2BF|8343|histone cluster 1, H2bf	0.946592	denovo_WM_21:-13:0.947
chr22	22385192	22385311	reg1001425.p1	4.452	+	TSC_hg19_v1_chr22_-_22337185 AK304681 AL833505 AK290997	-48065	-	TSC_hg19_v1_chr22_-_22337164 AF017146 AF053082 BC002432 NM_003935 AK304709	-48104	-	TSC_hg19_v1_chr22_-_22307213 AK291628 NM_014634	-78020	-	TSC_hg19_v1_chr22_+_22385369 AF026922	114	+	X02422 TSC_hg19_v1_chr22_+_22550141	164878	+	TSC_hg19_v1_chr22_+_22550162 BC023973 AY190823 FJ200244	164927	+	AL833505|TOP3B|8940|topoisomerase (DNA) III beta##AK290997|TOP3B|8940|topoisomerase (DNA) III beta##AF017146|TOP3B|8940|topoisomerase (DNA) III beta##AF053082|TOP3B|8940|topoisomerase (DNA) III beta##BC002432|TOP3B|8940|topoisomerase (DNA) III beta##NM_003935|TOP3B|8940|topoisomerase (DNA) III beta##AK304709|TOP3B|8940|topoisomerase (DNA) III beta##AK291628|PPM1F|9647|protein phosphatase, Mg2+/Mn2+ dependent, 1F##NM_014634|PPM1F|9647|protein phosphatase, Mg2+/Mn2+ dependent, 1F##BC023973|IGLV6-57|28778|immunoglobulin lambda variable 6-57	0.0	
chr21	35014057	35014183	reg1001826.p1	4.451	+	BC033023 AK315707 AF029689 AF098798 BC022827 BC013155 TSC_hg19_v1_chr21_-_35014048 BX647276 BX648547 AK001293 NM_145858	-34	-	TSC_hg19_v1_chr21_-_34960983 AK074964 BC048266 NM_017613	-53094	-	TSC_hg19_v1_chr21_+_34922923 BC002422	-91150	+	TSC_hg19_v1_chr21_+_35014896 AK027846 BC058925 AF114487 AF114488 NM_001001132 NM_003024 AK075290 BC046162 BC039036 BC117560 AK300274 BC073744 AK074554 BC020269 BC013578 AF064243 AF064244 DQ679754 DQ679755 DQ679756 DQ679757 EU107386 EU120735 EU120736 EU140799 EU191901 BC116185 BC116186	735	+	TSC_hg19_v1_chr21_+_35190587 AY340592 AY340593 AF180522 AY138139	176550	+	DQ656021 DQ656022 BT019836 CR456822 BC021233 AK124187 TSC_hg19_v1_chr21_-_35288097 AK222962 AK311796 BC022865 X83218 AK222608 NM_001697	273972	-	BC033023|CRYZL1|9946|crystallin, zeta (quinone reductase)-like 1##AK315707|CRYZL1|9946|crystallin, zeta (quinone reductase)-like 1##AF029689|CRYZL1|9946|crystallin, zeta (quinone reductase)-like 1##AF098798|CRYZL1|9946|crystallin, zeta (quinone reductase)-like 1##BC022827|CRYZL1|9946|crystallin, zeta (quinone reductase)-like 1##BC013155|CRYZL1|9946|crystallin, zeta (quinone reductase)-like 1##BX647276|CRYZL1|9946|crystallin, zeta (quinone reductase)-like 1##BX648547|CRYZL1|9946|crystallin, zeta (quinone reductase)-like 1##AK001293|CRYZL1|9946|crystallin, zeta (quinone reductase)-like 1##NM_145858|CRYZL1|9946|crystallin, zeta (quinone reductase)-like 1##AK074964|DONSON|29980|downstream neighbor of SON##BC048266|DONSON|29980|downstream neighbor of SON##NM_017613|DONSON|29980|downstream neighbor of SON##BC002422|SON|6651|SON DNA binding protein##AK027846|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC058925|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114487|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114488|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_001001132|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_003024|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK075290|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC039036|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC117560|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK300274|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC073744|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK074554|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC020269|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC013578|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064243|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064244|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679754|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679755|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679756|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679757|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU107386|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120735|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120736|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU140799|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU191901|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116185|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116186|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY340592|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY340593|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF180522|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY138139|ITSN1|6453|intersectin 1 (SH3 domain protein)##BT019836|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##CR456822|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC021233|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK124187|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222962|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK311796|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC022865|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##X83218|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222608|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##NM_001697|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	0.916784	denovo_WM_21:-48:0.917
chr2	46771267	46771387	reg1001366.p1	4.451	+	TSC_hg19_v1_chr2_+_46769905 BC056154 BC070485 BC065291 BC093805 BC101806 AF498976 M31470 AB528045	-1289	+	TSC_hg19_v1_chr2_+_46769874 NM_012249 AK095329	-1478	+	BC034808 NM_080653	-24232	-	BC010864 D13435 TSC_hg19_v1_chr2_-_46844167 BC039303	72835	-	TSC_hg19_v1_chr2_-_46844187 BC021725 BC029408 AK291108 NM_002643 NM_173074	72890	-	TSC_hg19_v1_chr2_+_46844353 NM_014171 AK291298 AF161488 BC018653 BC006980 BC006979	73026	+	BC056154|RHOQ|23433|ras homolog gene family, member Q##BC070485|RHOQ|23433|ras homolog gene family, member Q##BC065291|RHOQ|23433|ras homolog gene family, member Q##BC093805|RHOQ|23433|ras homolog gene family, member Q##BC101806|RHOQ|23433|ras homolog gene family, member Q##AF498976|RHOQ|23433|ras homolog gene family, member Q##M31470|RHOQ|23433|ras homolog gene family, member Q##NM_012249|RHOQ|23433|ras homolog gene family, member Q##AK095329|RHOQ|23433|ras homolog gene family, member Q##BC034808|ATP6V1E2|90423|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2##NM_080653|ATP6V1E2|90423|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2##D13435|PIGF|5281|phosphatidylinositol glycan anchor biosynthesis, class F##BC021725|PIGF|5281|phosphatidylinositol glycan anchor biosynthesis, class F##BC029408|PIGF|5281|phosphatidylinositol glycan anchor biosynthesis, class F##AK291108|PIGF|5281|phosphatidylinositol glycan anchor biosynthesis, class F##NM_002643|PIGF|5281|phosphatidylinositol glycan anchor biosynthesis, class F##NM_173074|PIGF|5281|phosphatidylinositol glycan anchor biosynthesis, class F##NM_014171|CRIPT|9419|cysteine-rich PDZ-binding protein##AK291298|CRIPT|9419|cysteine-rich PDZ-binding protein##AF161488|CRIPT|9419|cysteine-rich PDZ-binding protein##BC018653|CRIPT|9419|cysteine-rich PDZ-binding protein##BC006980|CRIPT|9419|cysteine-rich PDZ-binding protein##BC006979|CRIPT|9419|cysteine-rich PDZ-binding protein	0.350589	denovo_WM_21:-73:0.233
chr13	32525661	32525743	reg1001831.p1	4.449	+	TSC_hg19_v1_chr13_+_32420857 BC021729	-104800	+	NM_001166058 NM_130806 AF453828 AB527208 AY899851	-211989	+	AK291273 TSC_hg19_v1_chr13_+_31774136 BC068595 AB101481 AY190526	-751492	+	AL049784 NM_023037 U50534 TSC_hg19_v1_chr13_+_32605446	79739	+	BC146956 BC146965 NM_001136571	360387	-	TSC_hg19_v1_chr13_+_32889621 NM_000059 U43746 BC026160 BC047568	363915	+	BC021729|EEF1DP3|196549|eukaryotic translation elongation factor 1 delta pseudogene 3##NM_001166058|RXFP2|122042|relaxin/insulin-like family peptide receptor 2##NM_130806|RXFP2|122042|relaxin/insulin-like family peptide receptor 2##AF453828|RXFP2|122042|relaxin/insulin-like family peptide receptor 2##AY899851|RXFP2|122042|relaxin/insulin-like family peptide receptor 2##AK291273|B3GALTL|145173|beta 1,3-galactosyltransferase-like##BC068595|B3GALTL|145173|beta 1,3-galactosyltransferase-like##AB101481|B3GALTL|145173|beta 1,3-galactosyltransferase-like##AY190526|B3GALTL|145173|beta 1,3-galactosyltransferase-like##AL049784|FRY|10129|furry homolog (Drosophila)##NM_023037|FRY|10129|furry homolog (Drosophila)##U50534|FRY|10129|furry homolog (Drosophila)##BC146956|ZAR1L|646799|zygote arrest 1-like##BC146965|ZAR1L|646799|zygote arrest 1-like##NM_001136571|ZAR1L|646799|zygote arrest 1-like##NM_000059|BRCA2|675|breast cancer 2, early onset##U43746|BRCA2|675|breast cancer 2, early onset##BC026160|BRCA2|675|breast cancer 2, early onset##BC047568|BRCA2|675|breast cancer 2, early onset	0.0	
chr19	24216200	24216294	reg1001263.p1	4.448	+	TSC_hg19_v1_chr19_+_24097711 NM_001244038 AX721133 BC046415 AB593087	-118553	+	TSC_hg19_v1_chr19_+_23945812 BC071971	-270434	+	BC136346 AK056088 BC062216 TSC_hg19_v1_chr19_-_23941693 AK122869 NM_138286	-274612	-	TSC_hg19_v1_chr19_+_24216256 AK092150 AK092080 AK303431	9	+	TSC_hg19_v1_chr19_+_24269988 AF054180 NM_203282 BC056243 AK291286 BC043147 BC139749	53722	+	TSC_hg19_v1_chr19_+_28284377 BC024732	4068141	+	NM_001244038|ZNF726|730087|zinc finger protein 726##BC046415|ZNF726|730087|zinc finger protein 726##BC071971|RPSAP58|388524|ribosomal protein SA pseudogene 58##BC136346|ZNF681|148213|zinc finger protein 681##AK056088|ZNF681|148213|zinc finger protein 681##BC062216|ZNF681|148213|zinc finger protein 681##AK122869|ZNF681|148213|zinc finger protein 681##NM_138286|ZNF681|148213|zinc finger protein 681##AK303431|ZNF254|9534|zinc finger protein 254##AF054180|ZNF254|9534|zinc finger protein 254##NM_203282|ZNF254|9534|zinc finger protein 254##BC056243|ZNF254|9534|zinc finger protein 254##AK291286|ZNF254|9534|zinc finger protein 254##BC043147|ZNF254|9534|zinc finger protein 254##BC139749|ZNF254|9534|zinc finger protein 254	0.0	
chr19	15261357	15261519	reg1001276.p2	4.447	+	TSC_hg19_v1_chr19_-_15236518 U61263 BC011761 BC011722 NM_006844	-24902	-	BC000109 TSC_hg19_v1_chr19_-_15236004	-25450	-	BC126913 CU680024 CU680048 TSC_hg19_v1_chr19_-_15235944	-25592	-	TSC_hg19_v1_chr19_-_15311808 AB209447 NM_000435 U97669	50360	-	BC132958 BC132960 AK026061 NM_024794	81774	-	BC115002 NM_001142886	82374	-	U61263|ILVBL|10994|ilvB (bacterial acetolactate synthase)-like##BC011761|ILVBL|10994|ilvB (bacterial acetolactate synthase)-like##BC011722|ILVBL|10994|ilvB (bacterial acetolactate synthase)-like##NM_006844|ILVBL|10994|ilvB (bacterial acetolactate synthase)-like##BC000109|ILVBL|10994|ilvB (bacterial acetolactate synthase)-like##BC126913|ILVBL|10994|ilvB (bacterial acetolactate synthase)-like##AB209447|NOTCH3|4854|notch 3##NM_000435|NOTCH3|4854|notch 3##U97669|NOTCH3|4854|notch 3##BC132958|EPHX3|79852|epoxide hydrolase 3##BC132960|EPHX3|79852|epoxide hydrolase 3##AK026061|EPHX3|79852|epoxide hydrolase 3##NM_024794|EPHX3|79852|epoxide hydrolase 3##BC115002|EPHX3|79852|epoxide hydrolase 3##NM_001142886|EPHX3|79852|epoxide hydrolase 3	0.0	
chr6	116937481	116937577	reg1001329.p1	4.447	+	TSC_hg19_v1_chr6_+_116892710 BC008693 DQ892435 DQ892436 DQ892437 DQ895647 AB528403 CU677453	-44803	+	TSC_hg19_v1_chr6_+_116892666 AK301089 BC012534 AF132958 BC015802	-44862	+	TSC_hg19_v1_chr6_+_116892580 NM_001007464 NM_015952 NM_016104	-44927	+	AK299754 NM_001010892 NM_001161664 TSC_hg19_v1_chr6_+_116937643 BC022879 BC106949 AK095293	132	+	TSC_hg19_v1_chr6_-_116989930 BX537872 BC016879 AK054582 AK307523 NM_145062	52407	-	TSC_hg19_v1_chr6_+_117002373 NM_002269 AK314206 BC047409	64838	+	BC008693|RWDD1|51389|RWD domain containing 1##DQ892435|RWDD1|51389|RWD domain containing 1##DQ892436|RWDD1|51389|RWD domain containing 1##DQ892437|RWDD1|51389|RWD domain containing 1##DQ895647|RWDD1|51389|RWD domain containing 1##AK301089|RWDD1|51389|RWD domain containing 1##BC012534|RWDD1|51389|RWD domain containing 1##AF132958|RWDD1|51389|RWD domain containing 1##BC015802|RWDD1|51389|RWD domain containing 1##NM_001007464|RWDD1|51389|RWD domain containing 1##NM_015952|RWDD1|51389|RWD domain containing 1##NM_016104|RWDD1|51389|RWD domain containing 1##AK299754|RSPH4A|345895|radial spoke head 4 homolog A (Chlamydomonas)##NM_001010892|RSPH4A|345895|radial spoke head 4 homolog A (Chlamydomonas)##NM_001161664|RSPH4A|345895|radial spoke head 4 homolog A (Chlamydomonas)##BC022879|RSPH4A|345895|radial spoke head 4 homolog A (Chlamydomonas)##BC106949|RSPH4A|345895|radial spoke head 4 homolog A (Chlamydomonas)##AK095293|RSPH4A|345895|radial spoke head 4 homolog A (Chlamydomonas)##BX537872|ZUFSP|221302|zinc finger with UFM1-specific peptidase domain##BC016879|ZUFSP|221302|zinc finger with UFM1-specific peptidase domain##AK054582|ZUFSP|221302|zinc finger with UFM1-specific peptidase domain##AK307523|ZUFSP|221302|zinc finger with UFM1-specific peptidase domain##NM_145062|ZUFSP|221302|zinc finger with UFM1-specific peptidase domain##NM_002269|KPNA5|3841|karyopherin alpha 5 (importin alpha 6)##AK314206|KPNA5|3841|karyopherin alpha 5 (importin alpha 6)##BC047409|KPNA5|3841|karyopherin alpha 5 (importin alpha 6)	0.0	
chr15	42264841	42264952	reg1001539.p1	4.445	+	AK074621 AK292634 TSC_hg19_v1_chr15_-_42264753 AK024902 NM_139265	-143	-	TSC_hg19_v1_chr15_-_42264741 CU690850 DQ892745 DQ895991 BC077716 AF454953 BC006287 AF307137 AF323924 BC051823	-180	-	AF233523 NM_016642	-78622	-	NM_001206670	78004	-	AB527201 AB090876 NM_178034	121808	-	BC111481 BC035335 AK122623 BC142682 BC146648 BC131531 AK304368 AK172836 NM_213600	183907	-	AK074621|EHD4|30844|EH-domain containing 4##AK292634|EHD4|30844|EH-domain containing 4##AK024902|EHD4|30844|EH-domain containing 4##NM_139265|EHD4|30844|EH-domain containing 4##DQ892745|EHD4|30844|EH-domain containing 4##DQ895991|EHD4|30844|EH-domain containing 4##BC077716|EHD4|30844|EH-domain containing 4##AF454953|EHD4|30844|EH-domain containing 4##BC006287|EHD4|30844|EH-domain containing 4##AF307137|EHD4|30844|EH-domain containing 4##AF323924|EHD4|30844|EH-domain containing 4##BC051823|EHD4|30844|EH-domain containing 4##AF233523|SPTBN5|51332|spectrin, beta, non-erythrocytic 5##NM_016642|SPTBN5|51332|spectrin, beta, non-erythrocytic 5##NM_001206670|PLA2G4E|123745|phospholipase A2, group IVE##AB090876|PLA2G4D|283748|phospholipase A2, group IVD (cytosolic)##NM_178034|PLA2G4D|283748|phospholipase A2, group IVD (cytosolic)##BC111481|PLA2G4F|255189|phospholipase A2, group IVF##BC035335|PLA2G4F|255189|phospholipase A2, group IVF##AK122623|PLA2G4F|255189|phospholipase A2, group IVF##BC142682|PLA2G4F|255189|phospholipase A2, group IVF##BC146648|PLA2G4F|255189|phospholipase A2, group IVF##BC131531|PLA2G4F|255189|phospholipase A2, group IVF##AK304368|PLA2G4F|255189|phospholipase A2, group IVF##AK172836|PLA2G4F|255189|phospholipase A2, group IVF##NM_213600|PLA2G4F|255189|phospholipase A2, group IVF	0.859698	denovo_WM_21:-12:0.826
chr7	139045180	139045308	reg1000878.p1	4.445	+	TSC_hg19_v1_chr7_+_139044997 AB528652 EU832106 EU832200 CU677843 AF151832 AF151817	-230	+	TSC_hg19_v1_chr7_+_139044701 AK022895 BC056886	-518	+	TSC_hg19_v1_chr7_+_139044699 AK001476	-546	+	BC110858 BC104963 BC104965 AK126174 NM_198508	123188	-	NM_001080511	163429	+	TSC_hg19_v1_chr7_-_139477798 AF208291 AF326592 NM_001113239 NM_022740	432661	-	EU832106|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##EU832200|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##AF151832|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##AF151817|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##AK022895|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##BC056886|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##AK001476|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##BC110858|KLRG2|346689|killer cell lectin-like receptor subfamily G, member 2##BC104963|KLRG2|346689|killer cell lectin-like receptor subfamily G, member 2##BC104965|KLRG2|346689|killer cell lectin-like receptor subfamily G, member 2##AK126174|KLRG2|346689|killer cell lectin-like receptor subfamily G, member 2##NM_198508|KLRG2|346689|killer cell lectin-like receptor subfamily G, member 2##NM_001080511|CLEC2L|154790|C-type lectin domain family 2, member L##AF208291|HIPK2|28996|homeodomain interacting protein kinase 2##AF326592|HIPK2|28996|homeodomain interacting protein kinase 2##NM_001113239|HIPK2|28996|homeodomain interacting protein kinase 2##NM_022740|HIPK2|28996|homeodomain interacting protein kinase 2	0.847963	denovo_WM_21:-25:0.848
chr15	72562090	72562225	reg1001434.p1	4.444	+	TSC_hg19_v1_chr15_-_72523728 NM_001206796 NM_001206797 NM_001206798 NM_002654 NM_182470 NM_182471	-38429	-	TSC_hg19_v1_chr15_-_72523565 AK307855	-38590	-	BC007952 BC012811 TSC_hg19_v1_chr15_-_72523554 Z36831 BC000481 M23725	-38609	-	NM_020214	1470	-	AK294382 NM_001172685	36498	-	AK124858 TSC_hg19_v1_chr15_-_72612227 AK296004 BC030835	50020	-	NM_001206796|PKM2|5315|pyruvate kinase, muscle##NM_001206797|PKM2|5315|pyruvate kinase, muscle##NM_001206798|PKM2|5315|pyruvate kinase, muscle##NM_002654|PKM2|5315|pyruvate kinase, muscle##NM_182470|PKM2|5315|pyruvate kinase, muscle##NM_182471|PKM2|5315|pyruvate kinase, muscle##AK307855|PKM2|5315|pyruvate kinase, muscle##BC007952|PKM2|5315|pyruvate kinase, muscle##BC012811|PKM2|5315|pyruvate kinase, muscle##Z36831|PKM2|5315|pyruvate kinase, muscle##BC000481|PKM2|5315|pyruvate kinase, muscle##M23725|PKM2|5315|pyruvate kinase, muscle##NM_020214|PARP6|56965|poly (ADP-ribose) polymerase family, member 6##AK294382|CELF6|60677|CUGBP, Elav-like family member 6##NM_001172685|CELF6|60677|CUGBP, Elav-like family member 6##AK124858|CELF6|60677|CUGBP, Elav-like family member 6##AK296004|CELF6|60677|CUGBP, Elav-like family member 6##BC030835|CELF6|60677|CUGBP, Elav-like family member 6	0.0	
chr16	46809073	46809158	reg1001644.p2	4.437	+	AB451455 BC109096 BC109097 AJ247087 NM_182493	-26953	-	AF139658 TSC_hg19_v1_chr16_+_46723600 BC039032 BC063565 AK310633 AK021946 AB528212 AM392646 AM392910 AM393245 AM393680 AM393794 CU687764	-85518	+	BC050725 NM_014321 AK024019 TSC_hg19_v1_chr16_+_46723570 AK024077	-85550	+	TSC_hg19_v1_chr16_-_46865090 CU691166 BC056676 BX647945 NM_001001436	55973	-	TSC_hg19_v1_chr16_+_46918291 AY029173 NM_133443 BC062555	109166	+	NM_001142466 AK094971	109987	+	AB451455|MYLK3|91807|myosin light chain kinase 3##BC109096|MYLK3|91807|myosin light chain kinase 3##BC109097|MYLK3|91807|myosin light chain kinase 3##AJ247087|MYLK3|91807|myosin light chain kinase 3##NM_182493|MYLK3|91807|myosin light chain kinase 3##AF139658|ORC6|23594|origin recognition complex, subunit 6##BC039032|ORC6|23594|origin recognition complex, subunit 6##BC063565|ORC6|23594|origin recognition complex, subunit 6##AK310633|ORC6|23594|origin recognition complex, subunit 6##AK021946|ORC6|23594|origin recognition complex, subunit 6##AM392646|ORC6|23594|origin recognition complex, subunit 6##AM392910|ORC6|23594|origin recognition complex, subunit 6##AM393245|PPA2|27068|pyrophosphatase (inorganic) 2##AM393680|ORC6|23594|origin recognition complex, subunit 6##AM393794|PPA2|27068|pyrophosphatase (inorganic) 2##BC050725|ORC6|23594|origin recognition complex, subunit 6##NM_014321|ORC6|23594|origin recognition complex, subunit 6##AK024019|ORC6|23594|origin recognition complex, subunit 6##AK024077|ORC6|23594|origin recognition complex, subunit 6##BC056676|C16orf87|388272|chromosome 16 open reading frame 87##BX647945|C16orf87|388272|chromosome 16 open reading frame 87##NM_001001436|C16orf87|388272|chromosome 16 open reading frame 87##AY029173|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##NM_133443|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##BC062555|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##NM_001142466|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##AK094971|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2	0.0	
chr5	5046849	5046921	reg1001384.p2	4.436	+	AY335938 NM_024337	-1450718	+	AY249325 NM_178569 BC101608 BC101634 BC143638 BC143639 BC143640 BC171731	-2294584	+	AB188492 NM_001134222 NM_033267 BC065189	-2295114	-	AK127746 DQ266047 NM_139056 TSC_hg19_v1_chr5_+_5140442 AB462933 AJ315734	93626	+	TSC_hg19_v1_chr5_+_5422777 AK126937	375890	+	TSC_hg19_v1_chr5_+_5422794 AB023164 NM_015325 AB384549	376024	+	AY335938|IRX1|79192|iroquois homeobox 1##NM_024337|IRX1|79192|iroquois homeobox 1##AY249325|C5orf38|153571|chromosome 5 open reading frame 38##NM_178569|C5orf38|153571|chromosome 5 open reading frame 38##BC101608|C5orf38|153571|chromosome 5 open reading frame 38##BC101634|C5orf38|153571|chromosome 5 open reading frame 38##BC143638|C5orf38|153571|chromosome 5 open reading frame 38##BC143639|C5orf38|153571|chromosome 5 open reading frame 38##BC143640|C5orf38|153571|chromosome 5 open reading frame 38##BC171731|C5orf38|153571|chromosome 5 open reading frame 38##AB188492|IRX2|153572|iroquois homeobox 2##NM_001134222|IRX2|153572|iroquois homeobox 2##NM_033267|IRX2|153572|iroquois homeobox 2##BC065189|IRX2|153572|iroquois homeobox 2##AK127746|ADAMTS16|170690|ADAM metallopeptidase with thrombospondin type 1 motif, 16##DQ266047|ADAMTS16|170690|ADAM metallopeptidase with thrombospondin type 1 motif, 16##NM_139056|ADAMTS16|170690|ADAM metallopeptidase with thrombospondin type 1 motif, 16##AJ315734|ADAMTS16|170690|ADAM metallopeptidase with thrombospondin type 1 motif, 16##AB023164|KIAA0947|23379|KIAA0947##NM_015325|KIAA0947|23379|KIAA0947	0.0	
chr21	35014490	35014593	reg1001826.p2	4.435	+	BC033023 AK315707 AF029689 AF098798 BC022827 BC013155 TSC_hg19_v1_chr21_-_35014048 BX647276 BX648547 AK001293 NM_145858	-455	-	TSC_hg19_v1_chr21_-_34960983 AK074964 BC048266 NM_017613	-53515	-	TSC_hg19_v1_chr21_+_34922923 BC002422	-91571	+	TSC_hg19_v1_chr21_+_35014896 AK027846 BC058925 AF114487 AF114488 NM_001001132 NM_003024 AK075290 BC046162 BC039036 BC117560 AK300274 BC073744 AK074554 BC020269 BC013578 AF064243 AF064244 DQ679754 DQ679755 DQ679756 DQ679757 EU107386 EU120735 EU120736 EU140799 EU191901 BC116185 BC116186	314	+	TSC_hg19_v1_chr21_+_35190587 AY340592 AY340593 AF180522 AY138139	176129	+	DQ656021 DQ656022 BT019836 CR456822 BC021233 AK124187 TSC_hg19_v1_chr21_-_35288097 AK222962 AK311796 BC022865 X83218 AK222608 NM_001697	273551	-	BC033023|CRYZL1|9946|crystallin, zeta (quinone reductase)-like 1##AK315707|CRYZL1|9946|crystallin, zeta (quinone reductase)-like 1##AF029689|CRYZL1|9946|crystallin, zeta (quinone reductase)-like 1##AF098798|CRYZL1|9946|crystallin, zeta (quinone reductase)-like 1##BC022827|CRYZL1|9946|crystallin, zeta (quinone reductase)-like 1##BC013155|CRYZL1|9946|crystallin, zeta (quinone reductase)-like 1##BX647276|CRYZL1|9946|crystallin, zeta (quinone reductase)-like 1##BX648547|CRYZL1|9946|crystallin, zeta (quinone reductase)-like 1##AK001293|CRYZL1|9946|crystallin, zeta (quinone reductase)-like 1##NM_145858|CRYZL1|9946|crystallin, zeta (quinone reductase)-like 1##AK074964|DONSON|29980|downstream neighbor of SON##BC048266|DONSON|29980|downstream neighbor of SON##NM_017613|DONSON|29980|downstream neighbor of SON##BC002422|SON|6651|SON DNA binding protein##AK027846|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC058925|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114487|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114488|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_001001132|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_003024|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK075290|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC039036|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC117560|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK300274|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC073744|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK074554|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC020269|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC013578|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064243|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064244|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679754|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679755|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679756|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679757|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU107386|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120735|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120736|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU140799|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU191901|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116185|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116186|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY340592|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY340593|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF180522|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY138139|ITSN1|6453|intersectin 1 (SH3 domain protein)##BT019836|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##CR456822|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC021233|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK124187|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222962|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK311796|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC022865|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##X83218|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222608|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##NM_001697|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	0.959875	denovo_WM_21:21:0.960
chr10	79789287	79789361	reg1001757.p1	4.433	+	TSC_hg19_v1_chr10_-_79789304 NM_007055	-10	-	AF021351 AY091459 AB384941 TSC_hg19_v1_chr10_-_79789272 BC041089 AK300329	-103	-	AB384502 NM_004747 AB011155 BC146794 TSC_hg19_v1_chr10_-_79686514	-102922	-	NM_001026 NM_001142282 NM_001142283 NM_001142284 NM_001142285 NM_033022 TSC_hg19_v1_chr10_+_79793586	4232	+	TSC_hg19_v1_chr10_+_79793620 AK311776 AK311910 D28424 BX537975 BX647260 BC071926 AF147330 BC000523 BC003149	4307	+	TSC_hg19_v1_chr10_+_80828779 BC007288 NM_020338	1039464	+	NM_007055|POLR3A|11128|polymerase (RNA) III (DNA directed) polypeptide A, 155kDa##AF021351|POLR3A|11128|polymerase (RNA) III (DNA directed) polypeptide A, 155kDa##AY091459|POLR3A|11128|polymerase (RNA) III (DNA directed) polypeptide A, 155kDa##BC041089|POLR3A|11128|polymerase (RNA) III (DNA directed) polypeptide A, 155kDa##AK300329|POLR3A|11128|polymerase (RNA) III (DNA directed) polypeptide A, 155kDa##NM_004747|DLG5|9231|discs, large homolog 5 (Drosophila)##AB011155|DLG5|9231|discs, large homolog 5 (Drosophila)##BC146794|DLG5|9231|discs, large homolog 5 (Drosophila)##NM_001026|RPS24|6229|ribosomal protein S24##NM_001142282|RPS24|6229|ribosomal protein S24##NM_001142283|RPS24|6229|ribosomal protein S24##NM_001142284|RPS24|6229|ribosomal protein S24##NM_001142285|RPS24|6229|ribosomal protein S24##NM_033022|RPS24|6229|ribosomal protein S24##AK311776|RPS24|6229|ribosomal protein S24##AK311910|RPS24|6229|ribosomal protein S24##BX537975|RPS24|6229|ribosomal protein S24##BX647260|RPS24|6229|ribosomal protein S24##BC071926|RPS24|6229|ribosomal protein S24##AF147330|RPS24|6229|ribosomal protein S24##BC000523|RPS24|6229|ribosomal protein S24##BC003149|RPS24|6229|ribosomal protein S24##BC007288|ZMIZ1|57178|zinc finger, MIZ-type containing 1##NM_020338|ZMIZ1|57178|zinc finger, MIZ-type containing 1	0.0	
chr11	66725855	66725978	reg1001694.p1	4.433	+	TSC_hg19_v1_chr11_-_66725855 BC011617 AK297705 NM_000920 NM_001040716	-68	-	U30891 NM_022172 TSC_hg19_v1_chr11_-_66675385 S72370 U30890	-50536	-	TSC_hg19_v1_chr11_-_66639602 AB527412 CU679988	-86301	-	AK026328 NM_001136485	16834	+	AK315810 NM_001177880	64273	+	NM_177963 AK289672 AK289727 BC037406	64936	+	BC011617|PC|5091|pyruvate carboxylase##AK297705|PC|5091|pyruvate carboxylase##NM_000920|PC|5091|pyruvate carboxylase##NM_001040716|PC|5091|pyruvate carboxylase##U30891|PC|5091|pyruvate carboxylase##NM_022172|PC|5091|pyruvate carboxylase##S72370|PC|5091|pyruvate carboxylase##U30890|PC|5091|pyruvate carboxylase##AK026328|C11orf86|254439|chromosome 11 open reading frame 86##NM_001136485|C11orf86|254439|chromosome 11 open reading frame 86##AK315810|SYT12|91683|synaptotagmin XII##NM_001177880|SYT12|91683|synaptotagmin XII##NM_177963|SYT12|91683|synaptotagmin XII##AK289672|SYT12|91683|synaptotagmin XII##AK289727|SYT12|91683|synaptotagmin XII##BC037406|SYT12|91683|synaptotagmin XII	0.933035	denovo_WM_21:0:0.933
chr9	125703144	125703214	reg1001021.p2	4.433	+	BC018748 NM_020924 TSC_hg19_v1_chr9_-_125693788	-9393	-	X82018 AK292401 BC037282 NM_006626	-27590	-	BC044642 AL833177 TSC_hg19_v1_chr9_-_125667584 NM_001100588 NM_018835	-35635	-	AK131449 TSC_hg19_v1_chr9_+_125703299 BC020609 NM_012197 AK022408 BC054492 AF161357 AJ011679	49	+	AK294531 AK299686 TSC_hg19_v1_chr9_+_125795928 AK313539	92688	+	AB384939 BC066885 BC066886 BC067532 BC067533 BC067534 CU688178 NM_005294	93666	+	BC018748|ZBTB26|57684|zinc finger and BTB domain containing 26##NM_020924|ZBTB26|57684|zinc finger and BTB domain containing 26##X82018|ZBTB6|10773|zinc finger and BTB domain containing 6##AK292401|ZBTB6|10773|zinc finger and BTB domain containing 6##BC037282|ZBTB6|10773|zinc finger and BTB domain containing 6##NM_006626|ZBTB6|10773|zinc finger and BTB domain containing 6##BC044642|RC3H2|54542|ring finger and CCCH-type domains 2##AL833177|RC3H2|54542|ring finger and CCCH-type domains 2##NM_001100588|RC3H2|54542|ring finger and CCCH-type domains 2##NM_018835|RC3H2|54542|ring finger and CCCH-type domains 2##AK131449|RABGAP1|23637|RAB GTPase activating protein 1##BC020609|RABGAP1|23637|RAB GTPase activating protein 1##NM_012197|RABGAP1|23637|RAB GTPase activating protein 1##AK022408|RABGAP1|23637|RAB GTPase activating protein 1##BC054492|RABGAP1|23637|RAB GTPase activating protein 1##AF161357|RABGAP1|23637|RAB GTPase activating protein 1##AJ011679|RABGAP1|23637|RAB GTPase activating protein 1##AK294531|RABGAP1|23637|RAB GTPase activating protein 1##AK299686|GPR21|2844|G protein-coupled receptor 21##AK313539|GPR21|2844|G protein-coupled receptor 21##BC066885|GPR21|2844|G protein-coupled receptor 21##BC066886|GPR21|2844|G protein-coupled receptor 21##BC067532|GPR21|2844|G protein-coupled receptor 21##BC067533|GPR21|2844|G protein-coupled receptor 21##BC067534|GPR21|2844|G protein-coupled receptor 21##NM_005294|GPR21|2844|G protein-coupled receptor 21	0.137091	
chr20	30326965	30327098	reg1001354.p1	4.431	+	TSC_hg19_v1_chr20_-_30311772 BX647525	-15291	-	TSC_hg19_v1_chr20_-_30310672 AY263336 BC019307 NM_001191 NM_138578 AK290968 AY263335 CR936637	-16365	-	BC032024 TSC_hg19_v1_chr20_-_30288101	-38934	-	NM_012112 TSC_hg19_v1_chr20_+_30327092 AK312549 AB024704 AF098158 AF287265 BC020207 BC004136	6	+	AJ272502 BC092413 NM_033118 BX647635	80153	+	AF042831 BT009768 AB464535 DQ896105 EU176391 BC013408 NM_004118	106338	-	BX647525|BCL2L1|598|BCL2-like 1##AY263336|BCL2L1|598|BCL2-like 1##BC019307|BCL2L1|598|BCL2-like 1##NM_001191|BCL2L1|598|BCL2-like 1##NM_138578|BCL2L1|598|BCL2-like 1##AK290968|BCL2L1|598|BCL2-like 1##AY263335|BCL2L1|598|BCL2-like 1##CR936637|BCL2L1|598|BCL2-like 1##NM_012112|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##AK312549|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##AB024704|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##AF098158|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##AF287265|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##BC020207|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##BC004136|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##AJ272502|MYLK2|85366|myosin light chain kinase 2##BC092413|MYLK2|85366|myosin light chain kinase 2##NM_033118|MYLK2|85366|myosin light chain kinase 2##BX647635|MYLK2|85366|myosin light chain kinase 2##AF042831|FOXS1|2307|forkhead box S1##BT009768|FOXS1|2307|forkhead box S1##DQ896105|FOXS1|2307|forkhead box S1##EU176391|FOXS1|2307|forkhead box S1##BC013408|FOXS1|2307|forkhead box S1##NM_004118|FOXS1|2307|forkhead box S1	1.462802	denovo_WM_21:14:0.685	denovo_WM_21:-19:0.778
chr19	54606103	54606288	reg1001078.p2	4.429	+	TSC_hg19_v1_chr19_+_54606162 AF070653 BC061644 NM_004542 AK289489 BC011021 BC022369 AF044955 CR542143	-29	+	TSC_hg19_v1_chr19_-_54604114 AF391163 AF474153 DQ893697 DQ894733 AF391162 AK091111 AX746784 AK311307 AK130199 AF391164 AF474152 AF251702 NM_130771 NM_133168 NM_133169 NM_206818	-2076	-	DQ479398 NM_001135686	-21562	-	NM_015629 DQ426885 AY040822 BC117389	12632	+	AK310647 AF052052 AK310627 NM_013342	12844	-	TSC_hg19_v1_chr19_+_54619133 AK301709 AB593025	12935	+	AF070653|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##BC061644|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##NM_004542|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##AK289489|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##BC011021|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##BC022369|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##AF044955|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##CR542143|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##AF391163|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AF474153|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##DQ893697|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##DQ894733|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AF391162|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AK091111|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AK311307|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AK130199|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AF391164|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AF474152|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AF251702|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##NM_130771|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##NM_133168|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##NM_133169|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##NM_206818|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##DQ479398|TARM1|441864|T cell-interacting, activating receptor on myeloid cells 1##NM_001135686|TARM1|441864|T cell-interacting, activating receptor on myeloid cells 1##NM_015629|PRPF31|26121|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)##AY040822|PRPF31|26121|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)##BC117389|PRPF31|26121|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)##AK310647|TFPT|29844|TCF3 (E2A) fusion partner (in childhood Leukemia)##AF052052|TFPT|29844|TCF3 (E2A) fusion partner (in childhood Leukemia)##AK310627|TFPT|29844|TCF3 (E2A) fusion partner (in childhood Leukemia)##NM_013342|TFPT|29844|TCF3 (E2A) fusion partner (in childhood Leukemia)##AK301709|PRPF31|26121|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)##AB593025|PRPF31|26121|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)	0.0	
chr19	49298744	49298814	reg1001197.p2	4.428	+	AY359086 NM_019113 AB021975 AB590410 DQ891786 DQ894970	-39361	+	D87935 D87936 D87937 NM_000148	-40133	-	AB195682 BC034769 NM_182575 AK301750	-48684	-	AK310243 U68418 CU674922 DQ892350 DQ895554 AF268047 AF268048 TSC_hg19_v1_chr19_-_49314287 BC001900 AK093627 AK309428 AK223522 AK310101 AK314548 NM_001164773 NM_001190	15469	-	AB528622 CU675337 TSC_hg19_v1_chr19_-_49339769 BC006283 BC006294 AK307437 AF126781	40995	-	TSC_hg19_v1_chr19_-_49339923 NM_016246	41144	-	AY359086|FGF21|26291|fibroblast growth factor 21##NM_019113|FGF21|26291|fibroblast growth factor 21##AB021975|FGF21|26291|fibroblast growth factor 21##DQ891786|FGF21|26291|fibroblast growth factor 21##DQ894970|FGF21|26291|fibroblast growth factor 21##D87935|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##D87936|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##D87937|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##NM_000148|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##AB195682|IZUMO1|284359|izumo sperm-egg fusion 1##BC034769|IZUMO1|284359|izumo sperm-egg fusion 1##NM_182575|IZUMO1|284359|izumo sperm-egg fusion 1##AK301750|IZUMO1|284359|izumo sperm-egg fusion 1##AK310243|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##U68418|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##DQ892350|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##DQ895554|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AF268047|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AF268048|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##BC001900|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK093627|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK309428|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK223522|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK310101|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK314548|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##NM_001164773|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##NM_001190|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##BC006283|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##BC006294|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##AK307437|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##AF126781|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##NM_016246|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14	0.0	
chr1	155304884	155304982	reg1001635.p1	4.427	+	AK298730 NM_014328 AK093777 AX748300 BC001045 AK307736 TSC_hg19_v1_chr1_+_155294297 AK074485 AB026894 AK074982 BC028055 BC004293 BX640612	-10641	+	TSC_hg19_v1_chr1_-_155293939 BC080538 NM_001039517 BC062571	-10991	-	BC052277 NM_001105205	-11206	+	AF257305 TSC_hg19_v1_chr1_-_155532251	227273	-	AB037841 AB209068 NM_018489 TSC_hg19_v1_chr1_-_155532387	227434	-	TSC_hg19_v1_chr1_-_155532562 AK307595	227648	-	AK298730|RUSC1|23623|RUN and SH3 domain containing 1##NM_014328|RUSC1|23623|RUN and SH3 domain containing 1##AK093777|RUSC1|23623|RUN and SH3 domain containing 1##BC001045|RUSC1|23623|RUN and SH3 domain containing 1##AK307736|RUSC1|23623|RUN and SH3 domain containing 1##AK074485|RUSC1|23623|RUN and SH3 domain containing 1##AB026894|RUSC1|23623|RUN and SH3 domain containing 1##AK074982|RUSC1|23623|RUN and SH3 domain containing 1##BC028055|RUSC1|23623|RUN and SH3 domain containing 1##BC004293|RUSC1|23623|RUN and SH3 domain containing 1##BX640612|RUSC1|23623|RUN and SH3 domain containing 1##BC080538|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##NM_001039517|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##BC062571|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##BC052277|RUSC1|23623|RUN and SH3 domain containing 1##NM_001105205|RUSC1|23623|RUN and SH3 domain containing 1##AF257305|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AB037841|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AB209068|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##NM_018489|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AK307595|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)	0.029416	
chr8	6565789	6565911	reg1000980.p1	4.427	+	HQ258258 AF187858 AB009865 BC126200 BC126202 BC143902 AF218015 BC022490 AK075219 AK225698 AK290070 AK310171 AK312541 NM_001118887 NM_001118888 NM_001147 TSC_hg19_v1_chr8_-_6420798 AJ289781	-145159	-	AK301702 TSC_hg19_v1_chr8_+_6264167	-301678	+	NM_001172574 NM_001172575 NM_024596 BC056195 BC030702 AK308387 TSC_hg19_v1_chr8_+_6264158	-301715	+	TSC_hg19_v1_chr8_+_6565896 NM_018361 BC080537	41	+	TSC_hg19_v1_chr8_+_6565916 AF375789 BC023550	90	+	TSC_hg19_v1_chr8_+_6566162 AL136587 AB528060 AM392899 AM393058 DQ893436 DQ896747 AK002072 AK310545 BC068519	333	+	HQ258258|ANGPT2|285|angiopoietin 2##AF187858|ANGPT2|285|angiopoietin 2##AB009865|ANGPT2|285|angiopoietin 2##BC126200|ANGPT2|285|angiopoietin 2##BC126202|ANGPT2|285|angiopoietin 2##BC143902|ANGPT2|285|angiopoietin 2##AF218015|ANGPT2|285|angiopoietin 2##BC022490|ANGPT2|285|angiopoietin 2##AK075219|ANGPT2|285|angiopoietin 2##AK225698|ANGPT2|285|angiopoietin 2##AK290070|ANGPT2|285|angiopoietin 2##AK310171|ANGPT2|285|angiopoietin 2##AK312541|ANGPT2|285|angiopoietin 2##NM_001118887|ANGPT2|285|angiopoietin 2##NM_001118888|ANGPT2|285|angiopoietin 2##NM_001147|ANGPT2|285|angiopoietin 2##AJ289781|ANGPT2|285|angiopoietin 2##AK301702|MCPH1|79648|microcephalin 1##NM_001172574|MCPH1|79648|microcephalin 1##NM_001172575|MCPH1|79648|microcephalin 1##NM_024596|MCPH1|79648|microcephalin 1##BC056195|MCPH1|79648|microcephalin 1##BC030702|MCPH1|79648|microcephalin 1##AK308387|MCPH1|79648|microcephalin 1##NM_018361|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##BC080537|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##AF375789|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##BC023550|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##AL136587|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##AM392899|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##AM393058|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##DQ893436|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##DQ896747|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##AK002072|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##AK310545|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##BC068519|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	1.625683	denovo_WM_21:6:0.978	denovo_WM_21:-45:0.648
chr2	3085047	3085138	reg1001248.p2	4.426	+	TSC_hg19_v1_chr2_-_2335085 AK307797	-750008	-	BC137272 BC137273 AF036943 TSC_hg19_v1_chr2_-_2335017 AB029029 BC150281 NM_015025	-750127	-	BC031690 TSC_hg19_v1_chr2_-_1946938	-1138186	-	DQ892693 DQ895936 CU677984 BC002485 TSC_hg19_v1_chr2_-_3381590 AK222652 AK026522 AF019952 NM_003310	296464	-	TSC_hg19_v1_chr2_+_3383492 AK094181 AK098327 NM_016030 BC014164	298413	+	AB463391 CU674724 AF087863 AB158319 BC001467 TSC_hg19_v1_chr2_-_3523303 AK222467 AK225278 AB073609 AK001775	438206	-	AK307797|MYT1L|23040|myelin transcription factor 1-like##BC137272|MYT1L|23040|myelin transcription factor 1-like##BC137273|MYT1L|23040|myelin transcription factor 1-like##AF036943|MYT1L|23040|myelin transcription factor 1-like##AB029029|MYT1L|23040|myelin transcription factor 1-like##BC150281|MYT1L|23040|myelin transcription factor 1-like##NM_015025|MYT1L|23040|myelin transcription factor 1-like##BC031690|MYT1L|23040|myelin transcription factor 1-like##DQ892693|TSSC1|7260|tumor suppressing subtransferable candidate 1##DQ895936|TSSC1|7260|tumor suppressing subtransferable candidate 1##BC002485|TSSC1|7260|tumor suppressing subtransferable candidate 1##AK222652|TSSC1|7260|tumor suppressing subtransferable candidate 1##AK026522|TSSC1|7260|tumor suppressing subtransferable candidate 1##AF019952|TSSC1|7260|tumor suppressing subtransferable candidate 1##NM_003310|TSSC1|7260|tumor suppressing subtransferable candidate 1##AK094181|TTC15|51112|tetratricopeptide repeat domain 15##AK098327|TTC15|51112|tetratricopeptide repeat domain 15##NM_016030|TTC15|51112|tetratricopeptide repeat domain 15##BC014164|TTC15|51112|tetratricopeptide repeat domain 15##AF087863|ADI1|55256|acireductone dioxygenase 1##AB158319|ADI1|55256|acireductone dioxygenase 1##BC001467|ADI1|55256|acireductone dioxygenase 1##AK222467|ADI1|55256|acireductone dioxygenase 1##AK225278|ADI1|55256|acireductone dioxygenase 1##AB073609|ADI1|55256|acireductone dioxygenase 1##AK001775|ADI1|55256|acireductone dioxygenase 1	0.0	
chr12	133541610	133541681	reg1001171.p2	4.425	+	BC020877 TSC_hg19_v1_chr12_-_133532893 AL832191 NM_183238 AK027873 AK122878 AL832623 NM_001164715	-8772	-	AK027687 TSC_hg19_v1_chr12_-_133464201 NM_001161344 NM_001161345 NM_001161346 NM_001161347 NM_018223	-77434	-	TSC_hg19_v1_chr12_-_133464153 AK001658 AK302785 AK304333 AF170724	-77473	-	TSC_hg19_v1_chr12_+_133563005 AK291243 BC046206 NM_019591	21353	+	NM_003428 TSC_hg19_v1_chr12_+_133613979 M27878 NM_001127372	72298	+	TSC_hg19_v1_chr12_+_133614094 BC062552 AK314232	72446	+	BC020877|ZNF605|100289635|zinc finger protein 605##AL832191|ZNF605|100289635|zinc finger protein 605##NM_183238|ZNF605|100289635|zinc finger protein 605##AK027873|ZNF605|100289635|zinc finger protein 605##AK122878|ZNF605|100289635|zinc finger protein 605##AL832623|ZNF605|100289635|zinc finger protein 605##NM_001164715|ZNF605|100289635|zinc finger protein 605##AK027687|CHFR|55743|checkpoint with forkhead and ring finger domains##NM_001161344|CHFR|55743|checkpoint with forkhead and ring finger domains##NM_001161345|CHFR|55743|checkpoint with forkhead and ring finger domains##NM_001161346|CHFR|55743|checkpoint with forkhead and ring finger domains##NM_001161347|CHFR|55743|checkpoint with forkhead and ring finger domains##NM_018223|CHFR|55743|checkpoint with forkhead and ring finger domains##AK001658|CHFR|55743|checkpoint with forkhead and ring finger domains##AK302785|CHFR|55743|checkpoint with forkhead and ring finger domains##AK304333|CHFR|55743|checkpoint with forkhead and ring finger domains##AF170724|CHFR|55743|checkpoint with forkhead and ring finger domains##AK291243|ZNF26|7574|zinc finger protein 26##BC046206|ZNF26|7574|zinc finger protein 26##NM_019591|ZNF26|7574|zinc finger protein 26##NM_003428|ZNF84|7637|zinc finger protein 84##M27878|ZNF84|7637|zinc finger protein 84##NM_001127372|ZNF84|7637|zinc finger protein 84##BC062552|ZNF84|7637|zinc finger protein 84##AK314232|ZNF84|7637|zinc finger protein 84	0.0	
chr1	28052277	28052401	reg1001454.p2	4.424	+	TSC_hg19_v1_chr1_-_27998734 NM_002038 NM_022872 NM_022873	-53600	-	TSC_hg19_v1_chr1_-_27998704 AK024814 AK314488	-53630	-	TSC_hg19_v1_chr1_-_27998690 X02492 BC011601 BC015603	-53662	-	TSC_hg19_v1_chr1_+_28052467 BC025768 NM_001143912 NM_001143913 NM_001143914 NM_001143915 NM_152660 AK290120 AK301672 AK098318 AK310165 AL035307 AL035309 CU693060	189	+	TSC_hg19_v1_chr1_+_28099762 NM_177424 AF123769 AL035306 AK297585 BC046999 AB464269 CU692348 CR407620 AK299982	47432	+	NM_014110 TSC_hg19_v1_chr1_+_28157314	104947	+	NM_002038|IFI6|2537|interferon, alpha-inducible protein 6##NM_022872|IFI6|2537|interferon, alpha-inducible protein 6##NM_022873|IFI6|2537|interferon, alpha-inducible protein 6##AK024814|IFI6|2537|interferon, alpha-inducible protein 6##AK314488|IFI6|2537|interferon, alpha-inducible protein 6##X02492|IFI6|2537|interferon, alpha-inducible protein 6##BC011601|IFI6|2537|interferon, alpha-inducible protein 6##BC015603|IFI6|2537|interferon, alpha-inducible protein 6##BC025768|FAM76A|199870|family with sequence similarity 76, member A##NM_001143912|FAM76A|199870|family with sequence similarity 76, member A##NM_001143913|FAM76A|199870|family with sequence similarity 76, member A##NM_001143914|FAM76A|199870|family with sequence similarity 76, member A##NM_001143915|FAM76A|199870|family with sequence similarity 76, member A##NM_152660|FAM76A|199870|family with sequence similarity 76, member A##AK290120|FAM76A|199870|family with sequence similarity 76, member A##AK301672|FAM76A|199870|family with sequence similarity 76, member A##AK098318|FAM76A|199870|family with sequence similarity 76, member A##AK310165|FAM76A|199870|family with sequence similarity 76, member A##AL035307|FAM76A|199870|family with sequence similarity 76, member A##AL035309|FAM76A|199870|family with sequence similarity 76, member A##NM_177424|STX12|23673|syntaxin 12##AF123769|STX12|23673|syntaxin 12##AL035306|STX12|23673|syntaxin 12##AK297585|STX12|23673|syntaxin 12##BC046999|STX12|23673|syntaxin 12##CR407620|STX12|23673|syntaxin 12##AK299982|STX12|23673|syntaxin 12##NM_014110|PPP1R8|5511|protein phosphatase 1, regulatory subunit 8	0.0	
chr1	109940614	109940708	reg1001209.p1	4.423	+	TSC_hg19_v1_chr1_-_109940529 AB590289 DQ896793 AK293118 BC023542 NM_002959 X98248	-93	-	AK310147 AK301548 NM_001205228	-4738	-	HQ258377 BC108664 BC132900 BC132902 BC144471 AK129834 NM_001010985	-91024	-	BT019717 CR456847 AB528717 X61970 BC102018 BC102019 BC102020 TSC_hg19_v1_chr1_-_109969040	28335	-	BC103751 TSC_hg19_v1_chr1_-_109969048	28388	-	AK225990 TSC_hg19_v1_chr1_-_109969071 AK304448 AK313351 NM_001199772 NM_002790 NM_001199773 NM_001199774	28421	-	DQ896793|SORT1|6272|sortilin 1##AK293118|SORT1|6272|sortilin 1##BC023542|SORT1|6272|sortilin 1##NM_002959|SORT1|6272|sortilin 1##AK310147|SORT1|6272|sortilin 1##AK301548|SORT1|6272|sortilin 1##NM_001205228|SORT1|6272|sortilin 1##HQ258377|MYBPHL|343263|myosin binding protein H-like##BC108664|MYBPHL|343263|myosin binding protein H-like##BC132900|MYBPHL|343263|myosin binding protein H-like##BC132902|MYBPHL|343263|myosin binding protein H-like##BC144471|MYBPHL|343263|myosin binding protein H-like##AK129834|MYBPHL|343263|myosin binding protein H-like##NM_001010985|MYBPHL|343263|myosin binding protein H-like##BT019717|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##CR456847|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##X61970|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##BC102018|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##BC102019|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##BC102020|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##BC103751|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##AK225990|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##AK304448|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##AK313351|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##NM_001199772|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##NM_002790|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##NM_001199773|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##NM_001199774|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5	0.921679	denovo_WM_21:22:0.894
chr12	50505848	50505981	reg1000566.p2	4.423	+	AK130162 TSC_hg19_v1_chr12_+_50497790 BC032234 NM_005276 AK295911 L34041 AK312516 DQ890626 DQ893793 CU689308	-8103	+	TSC_hg19_v1_chr12_+_50479124 AK292700 AK293932 AK130517 AB527887 CU679327 EU447009 BC000063 AF109733	-26801	+	TSC_hg19_v1_chr12_+_50479018 NM_003076 NM_139071 U66617 BC009368	-26927	+	TSC_hg19_v1_chr12_+_50506018 BC007849 NM_032901 AK312180	2	+	AB527479 TSC_hg19_v1_chr12_-_50561095 AK294521 BC014637 AK300937 NM_147190 BC033558	55177	-	TSC_hg19_v1_chr12_-_50561112 AK026014	55211	-	AK130162|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##BC032234|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##NM_005276|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##AK295911|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##L34041|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##AK312516|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##DQ890626|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##DQ893793|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##AK292700|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##AK293932|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##AK130517|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##EU447009|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##BC000063|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##AF109733|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##NM_003076|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##NM_139071|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##U66617|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##BC009368|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##BC007849|C12orf62|84987|chromosome 12 open reading frame 62##NM_032901|C12orf62|84987|chromosome 12 open reading frame 62##AK312180|C12orf62|84987|chromosome 12 open reading frame 62##AK294521|CERS5|91012|ceramide synthase 5##BC014637|CERS5|91012|ceramide synthase 5##AK300937|CERS5|91012|ceramide synthase 5##NM_147190|CERS5|91012|ceramide synthase 5##BC033558|CERS5|91012|ceramide synthase 5##AK026014|CERS5|91012|ceramide synthase 5	0.0	
chr5	61019790	61019860	reg1001404.p1	4.419	+	AK094862 NM_173667	-86190	+	TSC_hg19_v1_chr5_+_60628085 NM_020928	-391727	+	TSC_hg19_v1_chr5_-_60458296 BC103711 BX648459 BC066550 BX538015 AK291180 NM_001048249	-561558	-	TSC_hg19_v1_chr5_+_61601970 NM_001098511 NM_001243952 NM_001243953 NM_004520	582148	+	TSC_hg19_v1_chr5_+_61602066 BC047544	582257	+	TSC_hg19_v1_chr5_+_61602278 AK297347 AK307880 EF560716 EF560728 EU832810 GQ129246 AK315866	582445	+	AK094862|C5orf64|285668|chromosome 5 open reading frame 64##NM_173667|C5orf64|285668|chromosome 5 open reading frame 64##NM_020928|ZSWIM6|57688|zinc finger, SWIM-type containing 6##BC103711|C5orf43|643155|chromosome 5 open reading frame 43##BX648459|C5orf43|643155|chromosome 5 open reading frame 43##BC066550|C5orf43|643155|chromosome 5 open reading frame 43##BX538015|C5orf43|643155|chromosome 5 open reading frame 43##AK291180|C5orf43|643155|chromosome 5 open reading frame 43##NM_001048249|C5orf43|643155|chromosome 5 open reading frame 43##NM_001098511|KIF2A|3796|kinesin heavy chain member 2A##NM_001243952|KIF2A|3796|kinesin heavy chain member 2A##NM_001243953|KIF2A|3796|kinesin heavy chain member 2A##NM_004520|KIF2A|3796|kinesin heavy chain member 2A##BC047544|KIF2A|3796|kinesin heavy chain member 2A##AK297347|KIF2A|3796|kinesin heavy chain member 2A##AK307880|KIF2A|3796|kinesin heavy chain member 2A##EF560716|KIF2A|3796|kinesin heavy chain member 2A##EF560728|KIF2A|3796|kinesin heavy chain member 2A##EU832810|KIF2A|3796|kinesin heavy chain member 2A##GQ129246|KIF2A|3796|kinesin heavy chain member 2A##AK315866|KIF2A|3796|kinesin heavy chain member 2A	1.216366	denovo_WM_21:39:0.939	denovo_WM_21:62:0.278
chr3	81911053	81911137	reg1001252.p1	4.414	+	TSC_hg19_v1_chr3_-_81810971 NM_000158	-100153	-	TSC_hg19_v1_chr3_-_81810866 AB209731 BC012098	-100247	-	TSC_hg19_v1_chr3_-_81810802 AK297939	-100290	-	BC031255 TSC_hg19_v1_chr3_+_82035308	124207	+	TSC_hg19_v1_chr3_+_85008139 AB646739 BC105999 NM_001167674 NM_001167675 AK295885 BC063484 AL834270	3097034	+	AF538973 NM_153184	3864536	+	NM_000158|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##AB209731|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##BC012098|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##AK297939|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##AB646739|CADM2|253559|cell adhesion molecule 2##BC105999|CADM2|253559|cell adhesion molecule 2##NM_001167674|CADM2|253559|cell adhesion molecule 2##NM_001167675|CADM2|253559|cell adhesion molecule 2##AK295885|CADM2|253559|cell adhesion molecule 2##AL834270|CADM2|253559|cell adhesion molecule 2##AF538973|CADM2|253559|cell adhesion molecule 2##NM_153184|CADM2|253559|cell adhesion molecule 2	0.0	
chr15	91537732	91537901	reg1001084.p1	4.409	+	AF044588 BC003138 TSC_hg19_v1_chr15_-_91537766 AK297117 AK304094 BC005140 AK312600 NM_003981 NM_199413 NM_199414	-50	-	BC064606 BC113826 TSC_hg19_v1_chr15_+_91499981	-37841	+	TSC_hg19_v1_chr15_+_91498113 NM_001017919 NM_033544 BC140708 BC140709 BC094739	-39725	+	CU677627 TSC_hg19_v1_chr15_-_91565525	27686	-	BC016445 TSC_hg19_v1_chr15_-_91565785 AK074863 AF201694 AK315721 AF308803 AK027754 AK300608 AK293688 AK308480 NM_018668	27954	-	NM_001167580 TSC_hg19_v1_chr15_+_91643185 AK294902	105393	+	AF044588|PRC1|9055|protein regulator of cytokinesis 1##BC003138|PRC1|9055|protein regulator of cytokinesis 1##AK297117|PRC1|9055|protein regulator of cytokinesis 1##AK304094|PRC1|9055|protein regulator of cytokinesis 1##BC005140|PRC1|9055|protein regulator of cytokinesis 1##AK312600|PRC1|9055|protein regulator of cytokinesis 1##NM_003981|PRC1|9055|protein regulator of cytokinesis 1##NM_199413|PRC1|9055|protein regulator of cytokinesis 1##NM_199414|PRC1|9055|protein regulator of cytokinesis 1##BC064606|RCCD1|91433|RCC1 domain containing 1##BC113826|RCCD1|91433|RCC1 domain containing 1##NM_001017919|RCCD1|91433|RCC1 domain containing 1##NM_033544|RCCD1|91433|RCC1 domain containing 1##BC140708|RCCD1|91433|RCC1 domain containing 1##BC140709|RCCD1|91433|RCC1 domain containing 1##BC094739|RCCD1|91433|RCC1 domain containing 1##BC016445|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK074863|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AF201694|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK315721|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AF308803|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK027754|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK300608|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK293688|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK308480|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##NM_018668|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##NM_001167580|SV2B|9899|synaptic vesicle glycoprotein 2B##AK294902|SV2B|9899|synaptic vesicle glycoprotein 2B	0.01798	
chr2	101868728	101868847	reg1001029.p1	4.408	+	AB449889 TSC_hg19_v1_chr2_-_101767845 AK300533 NM_001102426	-101004	-	NM_000993 NM_001098577 NM_001099693 TSC_hg19_v1_chr2_+_101618754 AK297247 AK297483 BC070210 BC070373 AK297167 AK311775	-250065	+	TSC_hg19_v1_chr2_+_101436610 NM_002518 U77970 BC072383 BC051351	-432021	+	TSC_hg19_v1_chr2_+_101869347 NM_017546	550	+	TSC_hg19_v1_chr2_+_101869378 AF103798 BC064421 BC018664	605	+	AM392566 AB463234 TSC_hg19_v1_chr2_-_101925153 BC019355 BC032328 AK074985 AK075141 AY450390 BC045743 AK129799 NM_173647	56355	-	AB449889|TBC1D8|11138|TBC1 domain family, member 8 (with GRAM domain)##AK300533|TBC1D8|11138|TBC1 domain family, member 8 (with GRAM domain)##NM_001102426|TBC1D8|11138|TBC1 domain family, member 8 (with GRAM domain)##NM_000993|RPL31|6160|ribosomal protein L31##NM_001098577|RPL31|6160|ribosomal protein L31##NM_001099693|RPL31|6160|ribosomal protein L31##AK297483|RPL31|6160|ribosomal protein L31##BC070210|RPL31|6160|ribosomal protein L31##BC070373|RPL31|6160|ribosomal protein L31##AK311775|RPL31|6160|ribosomal protein L31##NM_002518|NPAS2|4862|neuronal PAS domain protein 2##U77970|NPAS2|4862|neuronal PAS domain protein 2##BC072383|NPAS2|4862|neuronal PAS domain protein 2##BC051351|NPAS2|4862|neuronal PAS domain protein 2##NM_017546|C2orf29|55571|chromosome 2 open reading frame 29##AF103798|C2orf29|55571|chromosome 2 open reading frame 29##BC064421|C2orf29|55571|chromosome 2 open reading frame 29##BC018664|C2orf29|55571|chromosome 2 open reading frame 29##AM392566|RNF149|284996|ring finger protein 149##BC019355|RNF149|284996|ring finger protein 149##BC032328|RNF149|284996|ring finger protein 149##AK074985|RNF149|284996|ring finger protein 149##AK075141|RNF149|284996|ring finger protein 149##AY450390|RNF149|284996|ring finger protein 149##BC045743|RNF149|284996|ring finger protein 149##AK129799|RNF149|284996|ring finger protein 149##NM_173647|RNF149|284996|ring finger protein 149	0.0	
chr20	46523523	46523685	reg1001140.p1	4.404	+	TSC_hg19_v1_chr20_-_46415320 AY358461 CR749319 AY101176 NM_001161841 NM_198596	-108286	-	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	-108852	-	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	-392920	+	AB037836 TSC_hg19_v1_chr20_-_47444291	920682	-	TSC_hg19_v1_chr20_-_47444450 AJ320261 NM_020820	920835	-	TSC_hg19_v1_chr20_+_47538255 BC050449 NM_006420 BC144625 BC144626 AF084521	1014714	+	AY358461|SULF2|55959|sulfatase 2##CR749319|SULF2|55959|sulfatase 2##AY101176|SULF2|55959|sulfatase 2##NM_001161841|SULF2|55959|sulfatase 2##NM_198596|SULF2|55959|sulfatase 2##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##AB037836|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##AJ320261|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##NM_020820|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##BC050449|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##NM_006420|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144625|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144626|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##AF084521|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	0.0	
chr5	77587245	77587363	reg1001156.p2	4.404	+	BT007354 CR542170 CR542186 TSC_hg19_v1_chr5_-_77072105 AK300031 BC067837 BC105285 AF038952 AK312207 AK128395 BC018210 NM_004607	-515172	-	TSC_hg19_v1_chr5_-_76934509 BC001800 NM_032109	-652790	-	EU446696 AB527841 TSC_hg19_v1_chr5_-_76934486	-652875	-	BC113045 CU691576 DQ894915 EU176289 TSC_hg19_v1_chr5_-_77590458 AK225908 U91931	3121	-	TSC_hg19_v1_chr5_-_77590488 AY623424 AK303300	3173	-	TSC_hg19_v1_chr5_-_77590495 U81504	3188	-	BT007354|TBCA|6902|tubulin folding cofactor A##CR542170|TBCA|6902|tubulin folding cofactor A##CR542186|TBCA|6902|tubulin folding cofactor A##AK300031|TBCA|6902|tubulin folding cofactor A##BC067837|TBCA|6902|tubulin folding cofactor A##BC105285|TBCA|6902|tubulin folding cofactor A##AF038952|TBCA|6902|tubulin folding cofactor A##AK312207|TBCA|6902|tubulin folding cofactor A##BC018210|TBCA|6902|tubulin folding cofactor A##NM_004607|TBCA|6902|tubulin folding cofactor A##BC001800|OTP|23440|orthopedia homeobox##NM_032109|OTP|23440|orthopedia homeobox##EU446696|OTP|23440|orthopedia homeobox##DQ894915|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##EU176289|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AK225908|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##U91931|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AY623424|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AK303300|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##U81504|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit	0.0	
chr17	77771011	77771105	reg1001320.p1	4.402	+	TSC_hg19_v1_chr17_-_77770845 AB384672 CU679333 EU446831 BC008937 BC019289 AF266479 BC009376 AF174482 AK074560 NM_020649	-151	-	TSC_hg19_v1_chr17_+_77751988 AX721084 AX721090 NM_005189 NM_032647 BC004252 BC119759 BC119760 AB463499 CU678640 EU446542	-19077	+	AY230663 BC041453 NM_178543 AY358622	-66169	+	AY390430 CU677141 AB463501 BC014967 TSC_hg19_v1_chr17_-_77813168 NM_003655 EU439707 AF013956	42084	-	BC044939 TSC_hg19_v1_chr17_+_77893233	122141	+	TSC_hg19_v1_chr17_-_78009672 BC028290 NM_019020	238544	-	EU446831|CBX8|57332|chromobox homolog 8##BC008937|CBX8|57332|chromobox homolog 8##BC019289|CBX8|57332|chromobox homolog 8##AF266479|CBX8|57332|chromobox homolog 8##BC009376|CBX8|57332|chromobox homolog 8##AF174482|CBX8|57332|chromobox homolog 8##AK074560|CBX8|57332|chromobox homolog 8##NM_020649|CBX8|57332|chromobox homolog 8##NM_005189|CBX2|84733|chromobox homolog 2##NM_032647|CBX2|84733|chromobox homolog 2##BC004252|CBX2|84733|chromobox homolog 2##BC119759|CBX2|84733|chromobox homolog 2##BC119760|CBX2|84733|chromobox homolog 2##EU446542|CBX2|84733|chromobox homolog 2##AY230663|ENPP7|339221|ectonucleotide pyrophosphatase/phosphodiesterase 7##BC041453|ENPP7|339221|ectonucleotide pyrophosphatase/phosphodiesterase 7##NM_178543|ENPP7|339221|ectonucleotide pyrophosphatase/phosphodiesterase 7##AY358622|ENPP7|339221|ectonucleotide pyrophosphatase/phosphodiesterase 7##AY390430|CBX4|8535|chromobox homolog 4##BC014967|CBX4|8535|chromobox homolog 4##NM_003655|CBX4|8535|chromobox homolog 4##EU439707|CBX4|8535|chromobox homolog 4##AF013956|CBX4|8535|chromobox homolog 4##BC028290|TBC1D16|125058|TBC1 domain family, member 16##NM_019020|TBC1D16|125058|TBC1 domain family, member 16	0.801602	denovo_WM_21:-5:0.802
chr11	54979475	54979555	reg1001056.p1	4.401	+	NM_001004703	-3464234	+	BC140750 NM_001005272	-3567068	-	BC136850 BC136851 NM_001005270	-4975445	-	AF521869 BC001862 NM_024114	50142	+	BC140748 NM_001005274	131136	+	NM_001005275	155844	+	NM_001004703|OR4C46|119749|olfactory receptor, family 4, subfamily C, member 46##BC140750|OR4A5|81318|olfactory receptor, family 4, subfamily A, member 5##NM_001005272|OR4A5|81318|olfactory receptor, family 4, subfamily A, member 5##BC136850|OR4C12|283093|olfactory receptor, family 4, subfamily C, member 12##BC136851|OR4C12|283093|olfactory receptor, family 4, subfamily C, member 12##NM_001005270|OR4C12|283093|olfactory receptor, family 4, subfamily C, member 12##AF521869|TRIM48|79097|tripartite motif containing 48##BC001862|TRIM48|79097|tripartite motif containing 48##NM_024114|TRIM48|79097|tripartite motif containing 48##BC140748|OR4A16|81327|olfactory receptor, family 4, subfamily A, member 16##NM_001005274|OR4A16|81327|olfactory receptor, family 4, subfamily A, member 16##NM_001005275|OR4A15|81328|olfactory receptor, family 4, subfamily A, member 15	0.0	
chr1	43390075	43390176	reg1001227.p2	4.398	+	TSC_hg19_v1_chr1_+_43312304 AK296201	-77820	+	AK095184 TSC_hg19_v1_chr1_+_43312290	-77836	+	TSC_hg19_v1_chr1_+_43312284 AF131739	-77852	+	AB384810 BC118590 BC121804 TSC_hg19_v1_chr1_-_43424504 K03195	34297	-	TSC_hg19_v1_chr1_-_43424540 AK292791 AK293306 AK296736 AK312403 AB208987	34447	-	TSC_hg19_v1_chr1_-_43424834 NM_006516	34715	-	AK296201|ZNF691|51058|zinc finger protein 691##AF131739|ZNF691|51058|zinc finger protein 691##BC118590|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##BC121804|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##K03195|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##AK292791|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##AK293306|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##AK296736|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##AK312403|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##AB208987|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##NM_006516|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1	0.685097	denovo_WM_21:-61:0.685
chr4	190614109	190614194	reg1001708.p2	4.395	+	AK093499 AX748169 NM_178556 BC113860 BC114469	-1553531	+	BC111959 BC111961 BC143709 AK098667 NM_173553	-1587747	-	AK056719 AY429593 NM_174900	-1697227	+	L76159 NM_004477 AK291890 BC053997 TSC_hg19_v1_chr4_+_190862026	247856	+	TSC_hg19_v1_chr4_+_190862048 CU691066	247954	+	BC144572 AY714545 NM_001005217 NM_001199232	334252	-	AK093499|TRIML1|339976|tripartite motif family-like 1##NM_178556|TRIML1|339976|tripartite motif family-like 1##BC113860|TRIML1|339976|tripartite motif family-like 1##BC114469|TRIML1|339976|tripartite motif family-like 1##BC111959|TRIML2|205860|tripartite motif family-like 2##BC111961|TRIML2|205860|tripartite motif family-like 2##BC143709|TRIML2|205860|tripartite motif family-like 2##AK098667|TRIML2|205860|tripartite motif family-like 2##NM_173553|TRIML2|205860|tripartite motif family-like 2##AK056719|ZFP42|132625|zinc finger protein 42 homolog (mouse)##AY429593|ZFP42|132625|zinc finger protein 42 homolog (mouse)##NM_174900|ZFP42|132625|zinc finger protein 42 homolog (mouse)##L76159|FRG1|2483|FSHD region gene 1##NM_004477|FRG1|2483|FSHD region gene 1##AK291890|FRG1|2483|FSHD region gene 1##BC053997|FRG1|2483|FSHD region gene 1##BC144572|FRG2|448831|FSHD region gene 2##AY714545|FRG2|448831|FSHD region gene 2##NM_001005217|FRG2|448831|FSHD region gene 2##NM_001199232|LOC100288255|100288255|FSHD region gene 2-like	0.0	
chr19	47103743	47103813	reg1001125.p1	4.391	+	TSC_hg19_v1_chr19_-_46999149 AK124720 NM_020709	-104617	-	TSC_hg19_v1_chr19_-_46974789 BC032508 NM_001103149 NM_018215	-128973	-	AL834344 TSC_hg19_v1_chr19_-_46974751 AK290218 BC051688	-129056	-	TSC_hg19_v1_chr19_+_47104390 BC006182	619	+	AK094504 NM_001205281	678	-	TSC_hg19_v1_chr19_+_47104543 NM_005184	742	+	AK124720|PNMAL2|57469|PNMA-like 2##NM_020709|PNMAL2|57469|PNMA-like 2##BC032508|PNMAL1|55228|PNMA-like 1##NM_001103149|PNMAL1|55228|PNMA-like 1##NM_018215|PNMAL1|55228|PNMA-like 1##AL834344|PNMAL1|55228|PNMA-like 1##AK290218|PNMAL1|55228|PNMA-like 1##BC051688|PNMAL1|55228|PNMA-like 1##BC006182|CALM3|808|calmodulin 3 (phosphorylase kinase, delta)##AK094504|LOC100506012|100506012|serine/threonine-protein phosphatase 5-like##NM_001205281|LOC100506012|100506012|serine/threonine-protein phosphatase 5-like##NM_005184|CALM3|808|calmodulin 3 (phosphorylase kinase, delta)	0.0	
chr5	5046633	5046745	reg1001384.p1	4.390	+	AY335938 NM_024337	-1450522	+	AY249325 NM_178569 BC101608 BC101634 BC143638 BC143639 BC143640 BC171731	-2294388	+	AB188492 NM_001134222 NM_033267 BC065189	-2294918	-	AK127746 DQ266047 NM_139056 TSC_hg19_v1_chr5_+_5140442 AB462933 AJ315734	93822	+	TSC_hg19_v1_chr5_+_5422777 AK126937	376086	+	TSC_hg19_v1_chr5_+_5422794 AB023164 NM_015325 AB384549	376220	+	AY335938|IRX1|79192|iroquois homeobox 1##NM_024337|IRX1|79192|iroquois homeobox 1##AY249325|C5orf38|153571|chromosome 5 open reading frame 38##NM_178569|C5orf38|153571|chromosome 5 open reading frame 38##BC101608|C5orf38|153571|chromosome 5 open reading frame 38##BC101634|C5orf38|153571|chromosome 5 open reading frame 38##BC143638|C5orf38|153571|chromosome 5 open reading frame 38##BC143639|C5orf38|153571|chromosome 5 open reading frame 38##BC143640|C5orf38|153571|chromosome 5 open reading frame 38##BC171731|C5orf38|153571|chromosome 5 open reading frame 38##AB188492|IRX2|153572|iroquois homeobox 2##NM_001134222|IRX2|153572|iroquois homeobox 2##NM_033267|IRX2|153572|iroquois homeobox 2##BC065189|IRX2|153572|iroquois homeobox 2##AK127746|ADAMTS16|170690|ADAM metallopeptidase with thrombospondin type 1 motif, 16##DQ266047|ADAMTS16|170690|ADAM metallopeptidase with thrombospondin type 1 motif, 16##NM_139056|ADAMTS16|170690|ADAM metallopeptidase with thrombospondin type 1 motif, 16##AJ315734|ADAMTS16|170690|ADAM metallopeptidase with thrombospondin type 1 motif, 16##AB023164|KIAA0947|23379|KIAA0947##NM_015325|KIAA0947|23379|KIAA0947	0.0	
chr10	112679102	112679209	reg1000764.p2	4.389	+	TSC_hg19_v1_chr10_-_112678952 BC062778 AK021501 BC104248 BC104249 BC113000 BC113001 AK025724 BC105804 AK307314 BC073157 NM_001195304 NM_001195305 NM_001195307 NM_001243783	-143	-	TSC_hg19_v1_chr10_-_112678704 AK307126 NM_001195306	-459	-	AK315295 TSC_hg19_v1_chr10_+_112631685 AK223623 AK296753 BC026104 BC031049 BC015036 U96628	-47441	+	TSC_hg19_v1_chr10_+_112679309 NM_007373	140	+	TSC_hg19_v1_chr10_+_112679361 AK292833 AK293271	205	+	TSC_hg19_v1_chr10_+_112679363 BC044752 AB020669 BX649055 AF054828	225	+	BC062778|BBIP1|92482|BBSome interacting protein 1##AK021501|BBIP1|92482|BBSome interacting protein 1##BC104248|BBIP1|92482|BBSome interacting protein 1##BC104249|BBIP1|92482|BBSome interacting protein 1##BC113000|BBIP1|92482|BBSome interacting protein 1##BC113001|BBIP1|92482|BBSome interacting protein 1##AK025724|BBIP1|92482|BBSome interacting protein 1##BC105804|BBIP1|92482|BBSome interacting protein 1##AK307314|BBIP1|92482|BBSome interacting protein 1##BC073157|BBIP1|92482|BBSome interacting protein 1##NM_001195304|BBIP1|92482|BBSome interacting protein 1##NM_001195305|BBIP1|92482|BBSome interacting protein 1##NM_001195307|BBIP1|92482|BBSome interacting protein 1##NM_001243783|BBIP1|92482|BBSome interacting protein 1##AK307126|BBIP1|92482|BBSome interacting protein 1##NM_001195306|BBIP1|92482|BBSome interacting protein 1##AK315295|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK223623|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK296753|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC026104|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC031049|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC015036|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##U96628|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_007373|SHOC2|8036|soc-2 suppressor of clear homolog (C. elegans)##AK292833|SHOC2|8036|soc-2 suppressor of clear homolog (C. elegans)##AK293271|SHOC2|8036|soc-2 suppressor of clear homolog (C. elegans)##BC044752|SHOC2|8036|soc-2 suppressor of clear homolog (C. elegans)##AB020669|SHOC2|8036|soc-2 suppressor of clear homolog (C. elegans)##BX649055|SHOC2|8036|soc-2 suppressor of clear homolog (C. elegans)##AF054828|SHOC2|8036|soc-2 suppressor of clear homolog (C. elegans)	0.237106	denovo_WM_21:22:0.237
chr3	197186477	197186619	reg1001154.p1	4.388	+	BC140841 BC144651 TSC_hg19_v1_chr3_-_197025506 AK304280 NM_001098424 NM_001204386 NM_004087 U13896 U13897 AK310596	-161074	-	TSC_hg19_v1_chr3_-_197024987 BC015560 BC028486 AK310893	-161615	-	AK294855 NM_001204387 NM_001204388	-275547	-	TSC_hg19_v1_chr3_-_197282840 BC011964 BC005844 BC019317 NM_004051 NM_203314	96294	-	NM_203315 TSC_hg19_v1_chr3_-_197300209	113653	-	TSC_hg19_v1_chr3_-_197354756 BC067856 AK309924 BC094848 AK299863 BC080518 AK311713	168205	-	BC140841|DLG1|1739|discs, large homolog 1 (Drosophila)##BC144651|DLG1|1739|discs, large homolog 1 (Drosophila)##AK304280|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001098424|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001204386|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_004087|DLG1|1739|discs, large homolog 1 (Drosophila)##U13896|DLG1|1739|discs, large homolog 1 (Drosophila)##U13897|DLG1|1739|discs, large homolog 1 (Drosophila)##AK310596|DLG1|1739|discs, large homolog 1 (Drosophila)##BC015560|DLG1|1739|discs, large homolog 1 (Drosophila)##BC028486|DLG1|1739|discs, large homolog 1 (Drosophila)##AK310893|DLG1|1739|discs, large homolog 1 (Drosophila)##AK294855|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001204387|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001204388|DLG1|1739|discs, large homolog 1 (Drosophila)##BC011964|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC005844|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC019317|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##NM_004051|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##NM_203314|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##NM_203315|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC067856|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK309924|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##BC094848|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK299863|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##BC080518|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK311713|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene	0.0	
chr1	165567500	165567601	reg1001496.p1	4.382	+	TSC_hg19_v1_chr1_+_165513441 NM_001005214 BC132981 BC132983	-54078	+	AB593016 AK312922 NM_006917	-153005	-	AK127724 NM_177398	-241599	-	NM_004528	32559	+	TSC_hg19_v1_chr1_+_165600499 BC005964 DQ185045 AK312103 AF026977 AK223012 BC000505	32921	+	TSC_hg19_v1_chr1_-_165667539 AK302191 AK302183 X75425 U50203	100038	-	NM_001005214|LRRC52|440699|leucine rich repeat containing 52##BC132981|LRRC52|440699|leucine rich repeat containing 52##BC132983|LRRC52|440699|leucine rich repeat containing 52##AB593016|RXRG|6258|retinoid X receptor, gamma##AK312922|RXRG|6258|retinoid X receptor, gamma##NM_006917|RXRG|6258|retinoid X receptor, gamma##AK127724|LMX1A|4009|LIM homeobox transcription factor 1, alpha##NM_177398|LMX1A|4009|LIM homeobox transcription factor 1, alpha##NM_004528|MGST3|4259|microsomal glutathione S-transferase 3##BC005964|MGST3|4259|microsomal glutathione S-transferase 3##DQ185045|MGST3|4259|microsomal glutathione S-transferase 3##AK312103|MGST3|4259|microsomal glutathione S-transferase 3##AF026977|MGST3|4259|microsomal glutathione S-transferase 3##AK223012|MGST3|4259|microsomal glutathione S-transferase 3##BC000505|MGST3|4259|microsomal glutathione S-transferase 3##AK302191|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##AK302183|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##X75425|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##U50203|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1	0.0	
chr11	74459580	74459660	reg1001394.p1	4.382	+	BC142623 TSC_hg19_v1_chr11_-_74442472	-17167	-	NM_015424 AK304519 AY358522 AY279090 AY279091	-17415	-	AK302677 AK316370 D26018 NM_006591 TSC_hg19_v1_chr11_+_74303654 BC092454 AK316301 BC108908 BC108909 BC032636 BC058840 BC041703 AB383722	-155957	+	TSC_hg19_v1_chr11_+_74459915 AB082522 NM_001098638	288	+	TSC_hg19_v1_chr11_-_74660137 AK056364	200504	-	TSC_hg19_v1_chr11_-_74660150 BC064584 BC037294 BC040541	200536	-	BC142623|CHRDL2|25884|chordin-like 2##NM_015424|CHRDL2|25884|chordin-like 2##AK304519|CHRDL2|25884|chordin-like 2##AY358522|CHRDL2|25884|chordin-like 2##AY279090|CHRDL2|25884|chordin-like 2##AY279091|CHRDL2|25884|chordin-like 2##AK302677|POLD3|10714|polymerase (DNA-directed), delta 3, accessory subunit##AK316370|POLD3|10714|polymerase (DNA-directed), delta 3, accessory subunit##D26018|POLD3|10714|polymerase (DNA-directed), delta 3, accessory subunit##NM_006591|POLD3|10714|polymerase (DNA-directed), delta 3, accessory subunit##BC092454|POLD3|10714|polymerase (DNA-directed), delta 3, accessory subunit##AK316301|POLD3|10714|polymerase (DNA-directed), delta 3, accessory subunit##BC108908|POLD3|10714|polymerase (DNA-directed), delta 3, accessory subunit##BC108909|POLD3|10714|polymerase (DNA-directed), delta 3, accessory subunit##BC032636|POLD3|10714|polymerase (DNA-directed), delta 3, accessory subunit##BC058840|POLD3|10714|polymerase (DNA-directed), delta 3, accessory subunit##BC041703|POLD3|10714|polymerase (DNA-directed), delta 3, accessory subunit##AB082522|RNF169|254225|ring finger protein 169##NM_001098638|RNF169|254225|ring finger protein 169##AK056364|XRRA1|143570|X-ray radiation resistance associated 1##BC064584|XRRA1|143570|X-ray radiation resistance associated 1##BC037294|XRRA1|143570|X-ray radiation resistance associated 1##BC040541|XRRA1|143570|X-ray radiation resistance associated 1	0.0	
chr20	18447911	18448064	reg1001661.p2	4.380	+	TSC_hg19_v1_chr20_-_18447678 CR749327 BC036231 BC130341 BC144153 AK295073 AK055544 AK299746 NM_001099407	-262	-	BC001887 NM_001083330 NM_003434 TSC_hg19_v1_chr20_+_18269170 AK295273 AK295513 AK291389 AK316386 AK294263 AK313525	-178820	+	NM_020536 BC007537	-325072	+	TSC_hg19_v1_chr20_+_18448037 BC012588 BC016761 NM_006466 AK314838 AK096684 AK223298 AK290892 U93869 AB464048 DQ892695 DQ896169	102	+	AB464147 EU446767 AL832411 AF237576 BC020627 BC015938 NM_006606	29861	-	TSC_hg19_v1_chr20_+_18488207 NM_006363 NM_032985 NM_032986 NM_001172746	40234	+	CR749327|DZANK1|55184|double zinc ribbon and ankyrin repeat domains 1##BC036231|DZANK1|55184|double zinc ribbon and ankyrin repeat domains 1##BC130341|DZANK1|55184|double zinc ribbon and ankyrin repeat domains 1##BC144153|DZANK1|55184|double zinc ribbon and ankyrin repeat domains 1##AK295073|DZANK1|55184|double zinc ribbon and ankyrin repeat domains 1##AK055544|DZANK1|55184|double zinc ribbon and ankyrin repeat domains 1##AK299746|DZANK1|55184|double zinc ribbon and ankyrin repeat domains 1##NM_001099407|DZANK1|55184|double zinc ribbon and ankyrin repeat domains 1##BC001887|ZNF133|7692|zinc finger protein 133##NM_001083330|ZNF133|7692|zinc finger protein 133##NM_003434|ZNF133|7692|zinc finger protein 133##AK295273|ZNF133|7692|zinc finger protein 133##AK295513|ZNF133|7692|zinc finger protein 133##AK291389|ZNF133|7692|zinc finger protein 133##AK316386|ZNF133|7692|zinc finger protein 133##AK294263|ZNF133|7692|zinc finger protein 133##AK313525|ZNF133|7692|zinc finger protein 133##NM_020536|CSRP2BP|57325|CSRP2 binding protein##BC007537|CSRP2BP|57325|CSRP2 binding protein##BC012588|POLR3F|10621|polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa##BC016761|POLR3F|10621|polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa##NM_006466|POLR3F|10621|polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa##AK314838|POLR3F|10621|polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa##AK096684|POLR3F|10621|polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa##AK223298|POLR3F|10621|polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa##AK290892|POLR3F|10621|polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa##U93869|POLR3F|10621|polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa##DQ892695|POLR3F|10621|polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa##DQ896169|POLR3F|10621|polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa##EU446767|RBBP9|10741|retinoblastoma binding protein 9##AL832411|RBBP9|10741|retinoblastoma binding protein 9##AF237576|RBBP9|10741|retinoblastoma binding protein 9##BC020627|RBBP9|10741|retinoblastoma binding protein 9##BC015938|RBBP9|10741|retinoblastoma binding protein 9##NM_006606|RBBP9|10741|retinoblastoma binding protein 9##NM_006363|SEC23B|10483|Sec23 homolog B (S. cerevisiae)##NM_032985|SEC23B|10483|Sec23 homolog B (S. cerevisiae)##NM_032986|SEC23B|10483|Sec23 homolog B (S. cerevisiae)##NM_001172746|SEC23B|10483|Sec23 homolog B (S. cerevisiae)	0.0	
chr2	145475512	145475696	reg1001381.p1	4.379	+	AB011141 BC025696 AB056507 BC025730 TSC_hg19_v1_chr2_-_145277942 NM_001171653 NM_014795	-197683	-	BC127102 BC127101 TSC_hg19_v1_chr2_-_145277687 BC037975 AK294928 BC060819	-197973	-	TSC_hg19_v1_chr2_-_145275089 BC070275 AK308445 BC035706	-200401	-	TSC_hg19_v1_chr2_+_148602085 AK301629 M93415	3126513	+	TSC_hg19_v1_chr2_+_148602300 AK314124	3126731	+	BC069707 NM_001616 D31770 X62381 BC067416 BC067417 BC067418 X63128 AB529011 CU686984 CU688290	3127041	+	AB011141|ZEB2|9839|zinc finger E-box binding homeobox 2##BC025696|ZEB2|9839|zinc finger E-box binding homeobox 2##AB056507|ZEB2|9839|zinc finger E-box binding homeobox 2##BC025730|ZEB2|9839|zinc finger E-box binding homeobox 2##NM_001171653|ZEB2|9839|zinc finger E-box binding homeobox 2##NM_014795|ZEB2|9839|zinc finger E-box binding homeobox 2##BC127102|ZEB2|9839|zinc finger E-box binding homeobox 2##BC127101|ZEB2|9839|zinc finger E-box binding homeobox 2##BC037975|ZEB2|9839|zinc finger E-box binding homeobox 2##AK294928|ZEB2|9839|zinc finger E-box binding homeobox 2##BC060819|ZEB2|9839|zinc finger E-box binding homeobox 2##AK308445|ZEB2|9839|zinc finger E-box binding homeobox 2##BC035706|ZEB2|9839|zinc finger E-box binding homeobox 2##AK301629|ACVR2A|92|activin A receptor, type IIA##M93415|ACVR2A|92|activin A receptor, type IIA##AK314124|ACVR2A|92|activin A receptor, type IIA##BC069707|ACVR2A|92|activin A receptor, type IIA##NM_001616|ACVR2A|92|activin A receptor, type IIA##D31770|ACVR2A|92|activin A receptor, type IIA##X62381|ACVR2A|92|activin A receptor, type IIA##BC067416|ACVR2A|92|activin A receptor, type IIA##BC067417|ACVR2A|92|activin A receptor, type IIA##BC067418|ACVR2A|92|activin A receptor, type IIA##X63128|ACVR2A|92|activin A receptor, type IIA	0.020003	
chr21	40721296	40721392	reg1001097.p1	4.378	+	TSC_hg19_v1_chr21_-_40721011 NM_004965 BC107741	-314	-	TSC_hg19_v1_chr21_-_40720981 BC071643 BC023984 BC072672 BC070154 BC000075 AB209245 BC106080 BC070153 J02621 AK315410	-374	-	AB590110 BT007337 DQ891741 DQ894919 TSC_hg19_v1_chr21_-_40720926	-455	-	NM_004627 TSC_hg19_v1_chr21_+_40752235	30879	+	TSC_hg19_v1_chr21_+_40752257 AK299245 AK297186 AK293113	30905	+	TSC_hg19_v1_chr21_+_40752270 Y12478 AK293866 BC012415	30929	+	NM_004965|HMGN1|3150|high mobility group nucleosome binding domain 1##BC107741|HMGN1|3150|high mobility group nucleosome binding domain 1##BC071643|HMGN1|3150|high mobility group nucleosome binding domain 1##BC023984|HMGN1|3150|high mobility group nucleosome binding domain 1##BC072672|HMGN1|3150|high mobility group nucleosome binding domain 1##BC070154|HMGN1|3150|high mobility group nucleosome binding domain 1##BC000075|HMGN1|3150|high mobility group nucleosome binding domain 1##AB209245|HMGN1|3150|high mobility group nucleosome binding domain 1##BC106080|HMGN1|3150|high mobility group nucleosome binding domain 1##BC070153|HMGN1|3150|high mobility group nucleosome binding domain 1##J02621|HMGN1|3150|high mobility group nucleosome binding domain 1##AK315410|HMGN1|3150|high mobility group nucleosome binding domain 1##BT007337|HMGN1|3150|high mobility group nucleosome binding domain 1##DQ891741|HMGN1|3150|high mobility group nucleosome binding domain 1##DQ894919|HMGN1|3150|high mobility group nucleosome binding domain 1##NM_004627|WRB|7485|tryptophan rich basic protein##AK299245|WRB|7485|tryptophan rich basic protein##AK297186|WRB|7485|tryptophan rich basic protein##AK293113|WRB|7485|tryptophan rich basic protein##Y12478|WRB|7485|tryptophan rich basic protein##AK293866|WRB|7485|tryptophan rich basic protein##BC012415|WRB|7485|tryptophan rich basic protein	0.373632	denovo_WM_21:-13:0.374
chr11	51288007	51288128	reg1001298.p2	4.375	+	BC136850 BC136851 NM_001005270	-1283997	-	BC137005 NM_001001955	-1314125	+	TSC_hg19_v1_chr11_-_49230053 DQ088979 AF176574 BC025672 AK312366 AK295368 AK295470 AK300532 M99487 NM_001014986 NM_001193471 NM_001193472 NM_001193473 NM_004476 S76978	-2057960	-	BC140750 NM_001005272	124380	-	NM_001004703	227214	+	AF521869 BC001862 NM_024114	3741590	+	BC136850|OR4C12|283093|olfactory receptor, family 4, subfamily C, member 12##BC136851|OR4C12|283093|olfactory receptor, family 4, subfamily C, member 12##NM_001005270|OR4C12|283093|olfactory receptor, family 4, subfamily C, member 12##BC137005|OR4C13|283092|olfactory receptor, family 4, subfamily C, member 13##NM_001001955|OR4C13|283092|olfactory receptor, family 4, subfamily C, member 13##DQ088979|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AF176574|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##BC025672|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AK312366|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AK295368|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AK295470|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AK300532|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##M99487|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_001014986|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_001193471|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_001193472|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_001193473|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_004476|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##S76978|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##BC140750|OR4A5|81318|olfactory receptor, family 4, subfamily A, member 5##NM_001005272|OR4A5|81318|olfactory receptor, family 4, subfamily A, member 5##NM_001004703|OR4C46|119749|olfactory receptor, family 4, subfamily C, member 46##AF521869|TRIM48|79097|tripartite motif containing 48##BC001862|TRIM48|79097|tripartite motif containing 48##NM_024114|TRIM48|79097|tripartite motif containing 48	0.180406	
chr15	71055946	71056027	reg1001856.p1	4.372	+	AB046781 BC113407 BC113409 BC143266 BC143267 TSC_hg19_v1_chr15_-_71055898 AF322916 NM_018003	-144	-	BC016881 AL834243 NM_001008224 AK055435	-61359	-	TSC_hg19_v1_chr15_-_70878946 BC040579	-177042	-	CU675231 BC006082 BC009446 BC014018 AL833876 BC039153 TSC_hg19_v1_chr15_-_71146496 AK130092 AF443828 AF443829 AK002058 NM_018357 NM_197958	90482	-	CU693296 DQ890927 DQ894089 EU176528 AL360202 TSC_hg19_v1_chr15_-_71184737 BC027857 BC072414 AK313472 NM_020147	128705	-	BC026157 NM_001199017 NM_017691 AK225137 AK000163 NM_001199018 BC037982 AK295547 AK301971	128989	+	AB046781|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC113407|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC113409|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC143266|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC143267|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##AF322916|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##NM_018003|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC016881|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##AL834243|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##NM_001008224|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##AK055435|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC006082|LARP6|55323|La ribonucleoprotein domain family, member 6##BC009446|LARP6|55323|La ribonucleoprotein domain family, member 6##BC014018|LARP6|55323|La ribonucleoprotein domain family, member 6##AL833876|LARP6|55323|La ribonucleoprotein domain family, member 6##BC039153|LARP6|55323|La ribonucleoprotein domain family, member 6##AK130092|LARP6|55323|La ribonucleoprotein domain family, member 6##AF443828|LARP6|55323|La ribonucleoprotein domain family, member 6##AF443829|LARP6|55323|La ribonucleoprotein domain family, member 6##AK002058|LARP6|55323|La ribonucleoprotein domain family, member 6##NM_018357|LARP6|55323|La ribonucleoprotein domain family, member 6##NM_197958|LARP6|55323|La ribonucleoprotein domain family, member 6##DQ890927|THAP10|56906|THAP domain containing 10##DQ894089|THAP10|56906|THAP domain containing 10##EU176528|THAP10|56906|THAP domain containing 10##AL360202|THAP10|56906|THAP domain containing 10##BC027857|THAP10|56906|THAP domain containing 10##BC072414|THAP10|56906|THAP domain containing 10##AK313472|THAP10|56906|THAP domain containing 10##NM_020147|THAP10|56906|THAP domain containing 10##BC026157|LRRC49|54839|leucine rich repeat containing 49##NM_001199017|LRRC49|54839|leucine rich repeat containing 49##NM_017691|LRRC49|54839|leucine rich repeat containing 49##AK225137|LRRC49|54839|leucine rich repeat containing 49##AK000163|LRRC49|54839|leucine rich repeat containing 49##NM_001199018|LRRC49|54839|leucine rich repeat containing 49##BC037982|LRRC49|54839|leucine rich repeat containing 49##AK295547|LRRC49|54839|leucine rich repeat containing 49##AK301971|LRRC49|54839|leucine rich repeat containing 49	0.948535	denovo_WM_21:-13:0.949
chr17	43025156	43025248	reg1001055.p1	4.372	+	TSC_hg19_v1_chr17_-_43025057 NM_001080443	-140	-	BC062609 AB463686 J04569 BC013596 AF419299 BC041765 AK128790 TSC_hg19_v1_chr17_-_42992869 AK098380 AK098758 AK222683 AK295734 AK296259 AK303728 S40719 AK315398 NM_001131019 NM_001242376 NM_002055	-32317	-	BC127871 TSC_hg19_v1_chr17_-_42988807	-36400	-	TSC_hg19_v1_chr17_-_43045715 BC008798 NM_006688	20496	-	TSC_hg19_v1_chr17_-_43128979 AK290755 NM_001128631 AK026608	103727	-	TSC_hg19_v1_chr17_-_43138397 BC006472 BC006546 NM_024819	113210	-	NM_001080443|KIF18B|146909|kinesin family member 18B##BC062609|GFAP|2670|glial fibrillary acidic protein##J04569|GFAP|2670|glial fibrillary acidic protein##BC013596|GFAP|2670|glial fibrillary acidic protein##AF419299|GFAP|2670|glial fibrillary acidic protein##BC041765|GFAP|2670|glial fibrillary acidic protein##AK128790|GFAP|2670|glial fibrillary acidic protein##AK098380|GFAP|2670|glial fibrillary acidic protein##AK098758|GFAP|2670|glial fibrillary acidic protein##AK222683|GFAP|2670|glial fibrillary acidic protein##AK295734|GFAP|2670|glial fibrillary acidic protein##AK296259|GFAP|2670|glial fibrillary acidic protein##AK303728|GFAP|2670|glial fibrillary acidic protein##S40719|GFAP|2670|glial fibrillary acidic protein##AK315398|GFAP|2670|glial fibrillary acidic protein##NM_001131019|GFAP|2670|glial fibrillary acidic protein##NM_001242376|GFAP|2670|glial fibrillary acidic protein##NM_002055|GFAP|2670|glial fibrillary acidic protein##BC127871|GFAP|2670|glial fibrillary acidic protein##BC008798|C1QL1|10882|complement component 1, q subcomponent-like 1##NM_006688|C1QL1|10882|complement component 1, q subcomponent-like 1##AK290755|DCAKD|79877|dephospho-CoA kinase domain containing##NM_001128631|DCAKD|79877|dephospho-CoA kinase domain containing##AK026608|DCAKD|79877|dephospho-CoA kinase domain containing##BC006472|DCAKD|79877|dephospho-CoA kinase domain containing##BC006546|DCAKD|79877|dephospho-CoA kinase domain containing##NM_024819|DCAKD|79877|dephospho-CoA kinase domain containing	1.863606	denovo_WM_21:-8:0.966	denovo_WM_21:-31:0.898
chr7	98976838	98976933	reg1001459.p1	4.372	+	TSC_hg19_v1_chr7_+_98972352 AK314818 BC002562 BC007555	-4519	+	TSC_hg19_v1_chr7_+_98972332 BC002988 AF006084	-4549	+	TSC_hg19_v1_chr7_+_98972300 NM_005720	-4591	+	CU674336 BC007873 U41745 TSC_hg19_v1_chr7_-_99006199 BC071993	29307	-	TSC_hg19_v1_chr7_-_99006218 BC000684	29331	-	TSC_hg19_v1_chr7_-_99006284 NM_014891	29417	-	AK314818|ARPC1B|10095|actin related protein 2/3 complex, subunit 1B, 41kDa##BC002562|ARPC1B|10095|actin related protein 2/3 complex, subunit 1B, 41kDa##BC007555|ARPC1B|10095|actin related protein 2/3 complex, subunit 1B, 41kDa##BC002988|ARPC1B|10095|actin related protein 2/3 complex, subunit 1B, 41kDa##AF006084|ARPC1B|10095|actin related protein 2/3 complex, subunit 1B, 41kDa##NM_005720|ARPC1B|10095|actin related protein 2/3 complex, subunit 1B, 41kDa##BC007873|PDAP1|11333|PDGFA associated protein 1##U41745|PDAP1|11333|PDGFA associated protein 1##BC071993|PDAP1|11333|PDGFA associated protein 1##BC000684|PDAP1|11333|PDGFA associated protein 1##NM_014891|PDAP1|11333|PDGFA associated protein 1	0.309921	denovo_WM_21:-84:0.296
chr2	239034392	239034493	reg1001318.p1	4.370	+	NM_194312 AK124559	-25455	+	TSC_hg19_v1_chr2_+_238969747 BC000586 AK293283	-64675	+	TSC_hg19_v1_chr2_+_238969669 AK301009 BC007891 AF175767 AK298409 DQ893234 DQ896564 CU675851	-64762	+	NM_198582	12920	+	CR533533 FJ491380 FJ491381 CU675457 AB590373 DQ892800 DQ896047 EU832279 EU832364 TSC_hg19_v1_chr2_-_239112267 AL136850 BC035746 AY024365	77797	-	TSC_hg19_v1_chr2_-_239112326 BC006576 HQ658059 HQ658060 NM_030768	77880	-	NM_194312|ESPNL|339768|espin-like##AK124559|ESPNL|339768|espin-like##BC000586|SCLY|51540|selenocysteine lyase##AK293283|SCLY|51540|selenocysteine lyase##AK301009|SCLY|51540|selenocysteine lyase##BC007891|SCLY|51540|selenocysteine lyase##AF175767|SCLY|51540|selenocysteine lyase##AK298409|SCLY|51540|selenocysteine lyase##DQ893234|SCLY|51540|selenocysteine lyase##DQ896564|SCLY|51540|selenocysteine lyase##NM_198582|KLHL30|377007|kelch-like 30 (Drosophila)##CR533533|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##FJ491380|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##FJ491381|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##DQ892800|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##DQ896047|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##EU832279|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##EU832364|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##AL136850|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##BC035746|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##AY024365|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##BC006576|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##HQ658059|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##HQ658060|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##NM_030768|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase	0.0	
chr1	51887798	51887888	reg1001913.p1	4.369	+	AK090936 AX746691 AK308128 BX647676 NM_001159969	-77	-	AF007170 NM_001144832	-77105	-	TSC_hg19_v1_chr1_-_51796233 AK301587 AK000220	-91611	-	DQ367924 AB384758 BC054006 TSC_hg19_v1_chr1_-_51984939 AK129853 U07707 AK313396	97080	-	NM_001981 Z29064 TSC_hg19_v1_chr1_-_51985031	97181	-	NM_024586 NM_148906 NM_148908 NM_148909	194702	+	AK090936|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK308128|EPS15|2060|epidermal growth factor receptor pathway substrate 15##BX647676|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_001159969|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AF007170|TTC39A|22996|tetratricopeptide repeat domain 39A##NM_001144832|TTC39A|22996|tetratricopeptide repeat domain 39A##AK301587|TTC39A|22996|tetratricopeptide repeat domain 39A##AK000220|TTC39A|22996|tetratricopeptide repeat domain 39A##DQ367924|EPS15|2060|epidermal growth factor receptor pathway substrate 15##BC054006|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK129853|EPS15|2060|epidermal growth factor receptor pathway substrate 15##U07707|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK313396|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_001981|EPS15|2060|epidermal growth factor receptor pathway substrate 15##Z29064|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_024586|OSBPL9|114883|oxysterol binding protein-like 9##NM_148906|OSBPL9|114883|oxysterol binding protein-like 9##NM_148908|OSBPL9|114883|oxysterol binding protein-like 9##NM_148909|OSBPL9|114883|oxysterol binding protein-like 9	0.652369	denovo_WM_21:4:0.641
chrX	47518693	47518781	reg1001188.p2	4.367	+	TSC_hg19_v1_chrX_-_47518553 AF083241 AK312072 AF092737 NM_004182 NM_153477	-173	-	TSC_hg19_v1_chrX_-_47518534 AF083242 AK223320	-226	-	TSC_hg19_v1_chrX_-_47510001 NM_001114123 NM_005229	-8729	-	TSC_hg19_v1_chrX_+_47696313 AK126949 NM_007137	177560	+	TSC_hg19_v1_chrX_+_47696322 BC039609	177606	+	TSC_hg19_v1_chrX_-_47863389 BC114216 AK299325 AK122874 NM_001007088 NM_006962 NM_001178099	344616	-	AF083241|UXT|8409|ubiquitously-expressed, prefoldin-like chaperone##AK312072|UXT|8409|ubiquitously-expressed, prefoldin-like chaperone##AF092737|UXT|8409|ubiquitously-expressed, prefoldin-like chaperone##NM_004182|UXT|8409|ubiquitously-expressed, prefoldin-like chaperone##NM_153477|UXT|8409|ubiquitously-expressed, prefoldin-like chaperone##AF083242|UXT|8409|ubiquitously-expressed, prefoldin-like chaperone##AK223320|UXT|8409|ubiquitously-expressed, prefoldin-like chaperone##NM_001114123|ELK1|2002|ELK1, member of ETS oncogene family##NM_005229|ELK1|2002|ELK1, member of ETS oncogene family##AK126949|ZNF81|347344|zinc finger protein 81##NM_007137|ZNF81|347344|zinc finger protein 81##BC039609|ZNF81|347344|zinc finger protein 81##BC114216|ZNF182|7569|zinc finger protein 182##AK299325|ZNF182|7569|zinc finger protein 182##AK122874|ZNF182|7569|zinc finger protein 182##NM_001007088|ZNF182|7569|zinc finger protein 182##NM_006962|ZNF182|7569|zinc finger protein 182##NM_001178099|ZNF182|7569|zinc finger protein 182	0.676501	denovo_WM_21:12:0.677
chr10	130262783	130262854	reg1001038.p1	4.366	+	NM_001145966 NM_002417 X65550 X65551 TSC_hg19_v1_chr10_-_129924589	-338290	-	BX648180 NM_130435 BC071573 TSC_hg19_v1_chr10_+_129845875 AK290414 AJ430580 AJ315969	-416964	+	TSC_hg19_v1_chr10_+_129705366 AF406557 BC050062 X54134	-557363	+	NM_002412 TSC_hg19_v1_chr10_+_131265475 AK293593 M29971	1002653	+	TSC_hg19_v1_chr10_+_131265507 BC000824	1002696	+	AL832828 AB527459 HQ258299 BC126130 BC130479 NM_001005463	1499235	-	NM_001145966|MKI67|4288|antigen identified by monoclonal antibody Ki-67##NM_002417|MKI67|4288|antigen identified by monoclonal antibody Ki-67##X65550|MKI67|4288|antigen identified by monoclonal antibody Ki-67##X65551|MKI67|4288|antigen identified by monoclonal antibody Ki-67##BX648180|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##NM_130435|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##BC071573|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##AK290414|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##AJ430580|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##AJ315969|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##AF406557|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##BC050062|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##X54134|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##NM_002412|MGMT|4255|O-6-methylguanine-DNA methyltransferase##AK293593|MGMT|4255|O-6-methylguanine-DNA methyltransferase##M29971|MGMT|4255|O-6-methylguanine-DNA methyltransferase##BC000824|MGMT|4255|O-6-methylguanine-DNA methyltransferase##AL832828|EBF3|253738|early B-cell factor 3##HQ258299|EBF3|253738|early B-cell factor 3##BC126130|EBF3|253738|early B-cell factor 3##BC130479|EBF3|253738|early B-cell factor 3##NM_001005463|EBF3|253738|early B-cell factor 3	0.0	
chr6_cox_hap2	3616785	3616866	reg1000382.p2	4.364	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.391695	
chr19	9710505	9710598	reg1001196.p1	4.363	+	AK025435 TSC_hg19_v1_chr19_-_9695178 AK297919 NM_001008727	-15362	-	TSC_hg19_v1_chr19_-_9649291 AB209837 BC001791 NM_024106	-61253	-	BC101039 BC101040 BC101041 BC101042 AK056548 NM_152476	-101291	-	AK122974 BC032668 AK293004 AK304383 NM_152289	21348	-	TSC_hg19_v1_chr19_+_9732192 NM_001242812 BC036632 AK097685 BC143540	21625	+	TSC_hg19_v1_chr19_-_9785743 AK000086	75179	-	AK297919|ZNF121|7675|zinc finger protein 121##NM_001008727|ZNF121|7675|zinc finger protein 121##AB209837|ZNF426|79088|zinc finger protein 426##BC001791|ZNF426|79088|zinc finger protein 426##NM_024106|ZNF426|79088|zinc finger protein 426##BC101039|ZNF560|147741|zinc finger protein 560##BC101040|ZNF560|147741|zinc finger protein 560##BC101041|ZNF560|147741|zinc finger protein 560##BC101042|ZNF560|147741|zinc finger protein 560##AK056548|ZNF560|147741|zinc finger protein 560##NM_152476|ZNF560|147741|zinc finger protein 560##AK122974|ZNF561|93134|zinc finger protein 561##BC032668|ZNF561|93134|zinc finger protein 561##AK293004|ZNF561|93134|zinc finger protein 561##AK304383|ZNF561|93134|zinc finger protein 561##NM_152289|ZNF561|93134|zinc finger protein 561##NM_001242812|LOC284385|284385|uncharacterized LOC284385##AK097685|LOC284385|284385|uncharacterized LOC284385##BC143540|LOC284385|284385|uncharacterized LOC284385##AK000086|ZNF562|54811|zinc finger protein 562	0.0	
chr17	62223178	62223298	reg1001652.p1	4.360	+	AF059198 AB209869 TSC_hg19_v1_chr17_-_62207502 NM_001433 AK292403	-15722	-	TSC_hg19_v1_chr17_-_62207401 AB385116 BC130405 BC130407	-15840	-	TSC_hg19_v1_chr17_-_62097985 AK295382 AK309953 NM_001099786 NM_001099787 NM_001099788 NM_001099789	-125256	-	TSC_hg19_v1_chr17_-_62340591 AL832371 BC040521 AL834251 AK091214 AX746854	117348	-	TSC_hg19_v1_chr17_-_62340645 BC036672	117409	-	BC040522 NM_018469 TSC_hg19_v1_chr17_-_62340654	117416	-	AF059198|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##AB209869|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##NM_001433|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##AK292403|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##BC130405|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##BC130407|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##AK295382|ICAM2|3384|intercellular adhesion molecule 2##NM_001099786|ICAM2|3384|intercellular adhesion molecule 2##NM_001099787|ICAM2|3384|intercellular adhesion molecule 2##NM_001099788|ICAM2|3384|intercellular adhesion molecule 2##NM_001099789|ICAM2|3384|intercellular adhesion molecule 2##AL832371|TEX2|55852|testis expressed 2##BC040521|TEX2|55852|testis expressed 2##AL834251|TEX2|55852|testis expressed 2##AK091214|TEX2|55852|testis expressed 2##BC036672|TEX2|55852|testis expressed 2##BC040522|TEX2|55852|testis expressed 2##NM_018469|TEX2|55852|testis expressed 2	0.6842	denovo_WM_21:16:0.684
chr7	128379291	128379427	reg1001228.p1	4.360	+	BC032842 AF367470 NM_032599 AK313608 AK310308 BC037248	-23918	+	TSC_hg19_v1_chr7_+_128349114 AK093161 AK302221 AX747964 BC040906 AK310426	-30232	+	BC066973 NM_001012454 NM_001128926 BC105729 BC105730 BC105731 BC047310	-67013	+	HM002604 HM002605 HM002606 HM002607 HM002608 HM002609 HM002610 HM002611 HM002612 HM002613 HM002614 HM002615 HM002616 NM_001130674 NM_001199671 NM_001199672 NM_001199673 NM_001199674 NM_001219 TSC_hg19_v1_chr7_+_128379382	10	+	AK074862 TSC_hg19_v1_chr7_+_128379395	38	+	TSC_hg19_v1_chr7_+_128379412 AK312446 AK027460	53	+	BC032842|FAM71F1|84691|family with sequence similarity 71, member F1##AF367470|FAM71F1|84691|family with sequence similarity 71, member F1##NM_032599|FAM71F1|84691|family with sequence similarity 71, member F1##AK313608|FAM71F1|84691|family with sequence similarity 71, member F1##AK310308|FAM71F1|84691|family with sequence similarity 71, member F1##BC037248|FAM71F1|84691|family with sequence similarity 71, member F1##AK093161|FAM71F1|84691|family with sequence similarity 71, member F1##AK302221|FAM71F1|84691|family with sequence similarity 71, member F1##BC040906|FAM71F1|84691|family with sequence similarity 71, member F1##AK310426|FAM71F1|84691|family with sequence similarity 71, member F1##BC066973|FAM71F2|346653|family with sequence similarity 71, member F2##NM_001012454|FAM71F2|346653|family with sequence similarity 71, member F2##NM_001128926|FAM71F2|346653|family with sequence similarity 71, member F2##BC105729|FAM71F2|346653|family with sequence similarity 71, member F2##BC105730|FAM71F2|346653|family with sequence similarity 71, member F2##BC105731|FAM71F2|346653|family with sequence similarity 71, member F2##BC047310|FAM71F2|346653|family with sequence similarity 71, member F2##HM002604|CALU|813|calumenin##HM002605|CALU|813|calumenin##HM002606|CALU|813|calumenin##HM002607|CALU|813|calumenin##HM002609|CALU|813|calumenin##HM002610|CALU|813|calumenin##HM002611|CALU|813|calumenin##HM002613|CALU|813|calumenin##HM002615|CALU|813|calumenin##HM002616|CALU|813|calumenin##NM_001130674|CALU|813|calumenin##NM_001199671|CALU|813|calumenin##NM_001199672|CALU|813|calumenin##NM_001199673|CALU|813|calumenin##NM_001199674|CALU|813|calumenin##NM_001219|CALU|813|calumenin##AK074862|CALU|813|calumenin##AK312446|CALU|813|calumenin##AK027460|CALU|813|calumenin	0.205415	
chr1	44173021	44173143	reg1001220.p1	4.358	+	TSC_hg19_v1_chr1_-_44173037 BC094867	-59	-	BC002558 TSC_hg19_v1_chr1_+_44115828 AB014577	-57238	+	AK300039 TSC_hg19_v1_chr1_+_44115819	-57271	+	AK301829 AY051143 NM_006279 NM_174963 NM_174964 NM_174965 NM_174966 NM_174967 NM_174968 NM_174969 NM_174970 NM_174971 TSC_hg19_v1_chr1_+_44173217 BC050380	136	+	AF120274 NM_001136215 NM_057090 NM_057091	225909	+	TSC_hg19_v1_chr1_+_44412483 NM_014652	239379	+	BC094867|LOC100132774|100132774|uncharacterized LOC100132774##BC002558|KDM4A|9682|lysine (K)-specific demethylase 4A##AB014577|KDM4A|9682|lysine (K)-specific demethylase 4A##AK300039|KDM4A|9682|lysine (K)-specific demethylase 4A##AK301829|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##AY051143|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_006279|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174963|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174964|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174965|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174966|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174967|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174968|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174969|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174970|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174971|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##BC050380|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##AF120274|ARTN|9048|artemin##NM_001136215|ARTN|9048|artemin##NM_057090|ARTN|9048|artemin##NM_057091|ARTN|9048|artemin##NM_014652|IPO13|9670|importin 13	0.191293	
chr11	115093280	115093381	reg1001423.p1	4.353	+	AY309502 TSC_hg19_v1_chr11_-_115088658	-4682	-	NM_182495 AK057953 BC111797 TSC_hg19_v1_chr11_+_114549272 AB463625	-544082	+	AK000134 AK225236 TSC_hg19_v1_chr11_-_114466485 NM_001077639 NM_017678	-626852	-	TSC_hg19_v1_chr11_-_115375134 AB094146 CR457157 CU692354 AF132811 BC125102 BC125103 AY358334 AK075502 BC035930 AK315245 BC047021 NM_001098517 NM_014333	281850	-	TSC_hg19_v1_chr11_-_116643696 DQ892763 DQ896008 AK057832 AK225164 AK289635 AK291111 AK311068 BC006350 NM_001159736 NM_032725	1550368	-	AK301227 BT006642 CU678646 TSC_hg19_v1_chr11_-_116658720 BC004256 BC011929 BC012162 BC017380 AF019767 BC111028	1565385	-	AY309502|CADM1|23705|cell adhesion molecule 1##NM_182495|FAM55B|120406|family with sequence similarity 55, member B##AK057953|FAM55B|120406|family with sequence similarity 55, member B##BC111797|FAM55B|120406|family with sequence similarity 55, member B##AK000134|FAM55D|54827|family with sequence similarity 55, member D##AK225236|FAM55D|54827|family with sequence similarity 55, member D##NM_001077639|FAM55D|54827|family with sequence similarity 55, member D##NM_017678|FAM55D|54827|family with sequence similarity 55, member D##AB094146|CADM1|23705|cell adhesion molecule 1##CR457157|CADM1|23705|cell adhesion molecule 1##AF132811|CADM1|23705|cell adhesion molecule 1##BC125102|CADM1|23705|cell adhesion molecule 1##BC125103|CADM1|23705|cell adhesion molecule 1##AY358334|CADM1|23705|cell adhesion molecule 1##AK075502|CADM1|23705|cell adhesion molecule 1##BC035930|CADM1|23705|cell adhesion molecule 1##AK315245|CADM1|23705|cell adhesion molecule 1##BC047021|CADM1|23705|cell adhesion molecule 1##NM_001098517|CADM1|23705|cell adhesion molecule 1##NM_014333|CADM1|23705|cell adhesion molecule 1##DQ892763|BUD13|84811|BUD13 homolog (S. cerevisiae)##DQ896008|BUD13|84811|BUD13 homolog (S. cerevisiae)##AK057832|BUD13|84811|BUD13 homolog (S. cerevisiae)##AK225164|BUD13|84811|BUD13 homolog (S. cerevisiae)##AK289635|BUD13|84811|BUD13 homolog (S. cerevisiae)##AK291111|BUD13|84811|BUD13 homolog (S. cerevisiae)##AK311068|BUD13|84811|BUD13 homolog (S. cerevisiae)##BC006350|BUD13|84811|BUD13 homolog (S. cerevisiae)##NM_001159736|BUD13|84811|BUD13 homolog (S. cerevisiae)##NM_032725|BUD13|84811|BUD13 homolog (S. cerevisiae)##AK301227|ZNF259|8882|zinc finger protein 259##BT006642|ZNF259|8882|zinc finger protein 259##BC004256|ZNF259|8882|zinc finger protein 259##BC011929|ZNF259|8882|zinc finger protein 259##BC012162|ZNF259|8882|zinc finger protein 259##BC017380|ZNF259|8882|zinc finger protein 259##AF019767|ZNF259|8882|zinc finger protein 259##BC111028|ZNF259|8882|zinc finger protein 259	0.0	
chr5	158368416	158368601	reg1000863.p2	4.353	+	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-1082418	-	AK055297 TSC_hg19_v1_chr5_+_157184422	-1184128	+	BC126449 TSC_hg19_v1_chr5_+_157170749 AK095592 NM_173491 BC051353	-1197768	+	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	157949	-	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	158234	-	AK304228 NM_001199382	266140	-	AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##BC126449|LSM11|134353|LSM11, U7 small nuclear RNA associated##AK095592|LSM11|134353|LSM11, U7 small nuclear RNA associated##NM_173491|LSM11|134353|LSM11, U7 small nuclear RNA associated##BC051353|LSM11|134353|LSM11, U7 small nuclear RNA associated##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145	0.0	
chrX	118650305	118650402	reg1001251.p1	4.350	+	TSC_hg19_v1_chrX_+_118602407 BC068199 J02683 BC056160 CU691128	-47919	+	NM_001152 TSC_hg19_v1_chrX_+_118602390 AK315292	-47977	+	TSC_hg19_v1_chrX_+_118533353 AK091304 AK303932 AX746905 AK292035 CU676444 AL590525	-116947	+	CU692786 TSC_hg19_v1_chrX_-_118699348 AK096297 BC023506 AK026618 AK298877 NM_001170569	48991	-	TSC_hg19_v1_chrX_-_118699373 NM_001170570 NM_022101	49031	-	TSC_hg19_v1_chrX_+_118708527 AK301675 NM_003336 NM_181762 D28459 AK313092 AK223045 AK297696 AK223064	58152	+	BC068199|SLC25A5|292|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5##J02683|SLC25A5|292|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5##BC056160|SLC25A5|292|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5##NM_001152|SLC25A5|292|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5##AK315292|SLC25A5|292|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5##AK091304|SLC25A43|203427|solute carrier family 25, member 43##AK303932|SLC25A43|203427|solute carrier family 25, member 43##AK292035|SLC25A43|203427|solute carrier family 25, member 43##AL590525|SLC25A43|203427|solute carrier family 25, member 43##AK096297|CXorf56|63932|chromosome X open reading frame 56##BC023506|CXorf56|63932|chromosome X open reading frame 56##AK026618|CXorf56|63932|chromosome X open reading frame 56##AK298877|CXorf56|63932|chromosome X open reading frame 56##NM_001170569|CXorf56|63932|chromosome X open reading frame 56##NM_001170570|CXorf56|63932|chromosome X open reading frame 56##NM_022101|CXorf56|63932|chromosome X open reading frame 56##AK301675|UBE2A|7319|ubiquitin-conjugating enzyme E2A##NM_003336|UBE2A|7319|ubiquitin-conjugating enzyme E2A##NM_181762|UBE2A|7319|ubiquitin-conjugating enzyme E2A##D28459|UBE2A|7319|ubiquitin-conjugating enzyme E2A##AK313092|UBE2A|7319|ubiquitin-conjugating enzyme E2A##AK223045|UBE2A|7319|ubiquitin-conjugating enzyme E2A##AK297696|UBE2A|7319|ubiquitin-conjugating enzyme E2A##AK223064|UBE2A|7319|ubiquitin-conjugating enzyme E2A	0.0	
chr14	23289225	23289322	reg1001622.p1	4.347	+	Y18474 BX248291 AF092032 AJ130718 NM_001126106	-308	-	AB020532 BX161519 NM_001126105	-4215	-	BC003062 BC010107 TSC_hg19_v1_chr14_-_23284645 AK314351 AK301219	-4641	-	TSC_hg19_v1_chr14_+_23299095 AK096946 NM_178336 NM_180982 NM_181304 NM_181305 NM_181306 NM_181307	9818	+	TSC_hg19_v1_chr14_+_23299104 AK292011 AK000450 BX248749 BC055381 BC068070	9837	+	NM_004995 AK312657 TSC_hg19_v1_chr14_+_23305800 AK291325 BC064803	16527	+	Y18474|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BX248291|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AF092032|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AJ130718|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##NM_001126106|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AB020532|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BX161519|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##NM_001126105|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC003062|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC010107|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK314351|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK301219|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK096946|MRPL52|122704|mitochondrial ribosomal protein L52##NM_178336|MRPL52|122704|mitochondrial ribosomal protein L52##NM_180982|MRPL52|122704|mitochondrial ribosomal protein L52##NM_181304|MRPL52|122704|mitochondrial ribosomal protein L52##NM_181305|MRPL52|122704|mitochondrial ribosomal protein L52##NM_181306|MRPL52|122704|mitochondrial ribosomal protein L52##NM_181307|MRPL52|122704|mitochondrial ribosomal protein L52##AK292011|MRPL52|122704|mitochondrial ribosomal protein L52##AK000450|MRPL52|122704|mitochondrial ribosomal protein L52##BX248749|MRPL52|122704|mitochondrial ribosomal protein L52##BC055381|MRPL52|122704|mitochondrial ribosomal protein L52##BC068070|MRPL52|122704|mitochondrial ribosomal protein L52##NM_004995|MMP14|4323|matrix metallopeptidase 14 (membrane-inserted)##AK312657|MMP14|4323|matrix metallopeptidase 14 (membrane-inserted)##AK291325|MMP14|4323|matrix metallopeptidase 14 (membrane-inserted)##BC064803|MMP14|4323|matrix metallopeptidase 14 (membrane-inserted)	0.0	
chrUn_gl000223	140984	141055	reg1001291.p1	4.347	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.0	
chr1	17445959	17446102	reg1001899.p1	4.345	+	AB587350 AB023211 AB030176 BC009701 TSC_hg19_v1_chr1_-_17445947 AK295783 NM_007365	-123	-	DQ403007 TSC_hg19_v1_chr1_-_17380528 AK312056 U17248 BC007840 NM_003000	-65455	-	AL354615 AY461712 TSC_hg19_v1_chr1_-_17338424 BC030267 AK290210 NM_001141973 NM_001141974 NM_022089	-107647	-	AK314644 AK026652 AK225541 NM_013358 AB033768 BC130574 BC136402 HQ258487	85635	+	AB026831 NM_016233 BC109091 BC041592 BC109092	129569	+	AF229067 AK314839 NM_012387 AB017919 AK290507 AK309637 BC025718 AB527709 CU693030	188673	+	AB023211|PADI2|11240|peptidyl arginine deiminase, type II##AB030176|PADI2|11240|peptidyl arginine deiminase, type II##BC009701|PADI2|11240|peptidyl arginine deiminase, type II##AK295783|PADI2|11240|peptidyl arginine deiminase, type II##NM_007365|PADI2|11240|peptidyl arginine deiminase, type II##DQ403007|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##AK312056|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##U17248|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##BC007840|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##NM_003000|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##AL354615|ATP13A2|23400|ATPase type 13A2##AY461712|ATP13A2|23400|ATPase type 13A2##BC030267|ATP13A2|23400|ATPase type 13A2##AK290210|ATP13A2|23400|ATPase type 13A2##NM_001141973|ATP13A2|23400|ATPase type 13A2##NM_001141974|ATP13A2|23400|ATPase type 13A2##NM_022089|ATP13A2|23400|ATPase type 13A2##AK314644|PADI1|29943|peptidyl arginine deiminase, type I##AK026652|PADI1|29943|peptidyl arginine deiminase, type I##AK225541|PADI1|29943|peptidyl arginine deiminase, type I##NM_013358|PADI1|29943|peptidyl arginine deiminase, type I##AB033768|PADI1|29943|peptidyl arginine deiminase, type I##BC130574|PADI1|29943|peptidyl arginine deiminase, type I##BC136402|PADI1|29943|peptidyl arginine deiminase, type I##HQ258487|PADI1|29943|peptidyl arginine deiminase, type I##AB026831|PADI3|51702|peptidyl arginine deiminase, type III##NM_016233|PADI3|51702|peptidyl arginine deiminase, type III##BC109091|PADI3|51702|peptidyl arginine deiminase, type III##BC041592|PADI3|51702|peptidyl arginine deiminase, type III##BC109092|PADI3|51702|peptidyl arginine deiminase, type III##AF229067|PADI4|23569|peptidyl arginine deiminase, type IV##AK314839|PADI4|23569|peptidyl arginine deiminase, type IV##NM_012387|PADI4|23569|peptidyl arginine deiminase, type IV##AB017919|PADI4|23569|peptidyl arginine deiminase, type IV##AK290507|PADI4|23569|peptidyl arginine deiminase, type IV##AK309637|PADI4|23569|peptidyl arginine deiminase, type IV##BC025718|PADI4|23569|peptidyl arginine deiminase, type IV	0.012462	
chr6	42007295	42007365	reg1001493.p1	4.345	+	AB385206 CR542246 DQ891748 DQ895130 BC011616 M90814 TSC_hg19_v1_chr6_-_41909544 AK315421 AK299187 M92287 NM_001136125 NM_001760	-97831	-	TSC_hg19_v1_chr6_+_41889236 CU690756	-118063	+	TSC_hg19_v1_chr6_+_41889209 AK314147 BC007340	-118121	+	TSC_hg19_v1_chr6_-_42016453 AK303452 AB209825 AK057206 AK097856	9088	-	NM_001136017 NM_001136126	9279	-	BC033728 NM_138572 TSC_hg19_v1_chr6_+_42018261 AK057383 BC119678 BC119679 AL833401	10926	+	CR542246|CCND3|896|cyclin D3##DQ891748|CCND3|896|cyclin D3##DQ895130|CCND3|896|cyclin D3##BC011616|CCND3|896|cyclin D3##M90814|CCND3|896|cyclin D3##AK315421|CCND3|896|cyclin D3##AK299187|CCND3|896|cyclin D3##M92287|CCND3|896|cyclin D3##NM_001136125|CCND3|896|cyclin D3##NM_001760|CCND3|896|cyclin D3##AK314147|BYSL|705|bystin-like##BC007340|BYSL|705|bystin-like##AK303452|CCND3|896|cyclin D3##AB209825|CCND3|896|cyclin D3##AK057206|CCND3|896|cyclin D3##AK097856|CCND3|896|cyclin D3##NM_001136017|CCND3|896|cyclin D3##NM_001136126|CCND3|896|cyclin D3##BC033728|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa##NM_138572|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa##AK057383|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa##BC119678|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa##BC119679|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa##AL833401|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa	0.0	
chr1	89458663	89458785	reg1001104.p2	4.342	+	NM_001008661 NM_001008662 NM_001162536 NM_019610	-82	-	TSC_hg19_v1_chr1_-_89458288 AL833593 BC012942 CR627392 AK301326 AK315917 AK057176 AY028624	-365	-	AK289822 BC020597 TSC_hg19_v1_chr1_-_89357248 NM_001514	-101451	-	JF927951 BC140837 BC144650 BC063819 CR936758 AK001823 BC017992 AK309096 AL136680 CR936755 NM_018284	29756	-	AK291783 M55542 AK298032 AK303893 AB208912 BC002666 NM_002053	72242	-	M55543 AK226018 BC073163 AK057968 AK314325 BC022272 NM_004120	133017	-	NM_001008661|CCBL2|56267|cysteine conjugate-beta lyase 2##NM_001008662|CCBL2|56267|cysteine conjugate-beta lyase 2##NM_001162536|RBMXL1|494115|RNA binding motif protein, X-linked-like 1##NM_019610|RBMXL1|494115|RNA binding motif protein, X-linked-like 1##AL833593|CCBL2|56267|cysteine conjugate-beta lyase 2##BC012942|RBMXL1|494115|RNA binding motif protein, X-linked-like 1##CR627392|CCBL2|56267|cysteine conjugate-beta lyase 2##AK301326|CCBL2|56267|cysteine conjugate-beta lyase 2##AK315917|CCBL2|56267|cysteine conjugate-beta lyase 2##AK057176|CCBL2|56267|cysteine conjugate-beta lyase 2##AY028624|CCBL2|56267|cysteine conjugate-beta lyase 2##AK289822|GTF2B|2959|general transcription factor IIB##BC020597|GTF2B|2959|general transcription factor IIB##NM_001514|GTF2B|2959|general transcription factor IIB##JF927951|GBP3|2635|guanylate binding protein 3##BC140837|GBP3|2635|guanylate binding protein 3##BC144650|GBP3|2635|guanylate binding protein 3##BC063819|GBP3|2635|guanylate binding protein 3##CR936758|GBP3|2635|guanylate binding protein 3##AK001823|GBP3|2635|guanylate binding protein 3##BC017992|GBP3|2635|guanylate binding protein 3##AK309096|GBP3|2635|guanylate binding protein 3##AL136680|GBP3|2635|guanylate binding protein 3##CR936755|GBP3|2635|guanylate binding protein 3##NM_018284|GBP3|2635|guanylate binding protein 3##AK291783|GBP1|2633|guanylate binding protein 1, interferon-inducible##M55542|GBP1|2633|guanylate binding protein 1, interferon-inducible##AK298032|GBP1|2633|guanylate binding protein 1, interferon-inducible##AK303893|GBP1|2633|guanylate binding protein 1, interferon-inducible##AB208912|GBP1|2633|guanylate binding protein 1, interferon-inducible##BC002666|GBP1|2633|guanylate binding protein 1, interferon-inducible##NM_002053|GBP1|2633|guanylate binding protein 1, interferon-inducible##M55543|GBP2|2634|guanylate binding protein 2, interferon-inducible##AK226018|GBP2|2634|guanylate binding protein 2, interferon-inducible##BC073163|GBP2|2634|guanylate binding protein 2, interferon-inducible##AK057968|GBP2|2634|guanylate binding protein 2, interferon-inducible##AK314325|GBP2|2634|guanylate binding protein 2, interferon-inducible##BC022272|GBP2|2634|guanylate binding protein 2, interferon-inducible##NM_004120|GBP2|2634|guanylate binding protein 2, interferon-inducible	0.103326	
chr8	27631920	27632043	reg1001113.p1	4.341	+	BC006239 TSC_hg19_v1_chr8_-_27630126 BC054039 BC065295 BC110391 AK027900 AK316015 BC049197 AK311437 BC032588 AK292875 AK294848 AK001715 NM_018246	-1847	-	TSC_hg19_v1_chr8_+_27491466 AB007829 AB007830 NM_016240 NM_182826 BC075067 BC075068	-140403	+	BC060811 TSC_hg19_v1_chr8_+_27491395	-140592	+	AF306677 AF306678 TSC_hg19_v1_chr8_+_27632070 AF306675 AY882862 NM_001017420 AK124215 AF306679 AL832666 BC017933 BC034641	18	+	TSC_hg19_v1_chr8_-_27695325 AF189722 AB027250 AK027291 AF237709 BC015191 AB027249 NM_018492	63366	-	TSC_hg19_v1_chr8_-_27695574 AK301836	63578	-	BC006239|CCDC25|55246|coiled-coil domain containing 25##BC054039|CCDC25|55246|coiled-coil domain containing 25##BC065295|CCDC25|55246|coiled-coil domain containing 25##BC110391|CCDC25|55246|coiled-coil domain containing 25##AK027900|CCDC25|55246|coiled-coil domain containing 25##AK316015|CCDC25|55246|coiled-coil domain containing 25##BC049197|CCDC25|55246|coiled-coil domain containing 25##AK311437|CCDC25|55246|coiled-coil domain containing 25##BC032588|CCDC25|55246|coiled-coil domain containing 25##AK292875|CCDC25|55246|coiled-coil domain containing 25##AK294848|CCDC25|55246|coiled-coil domain containing 25##AK001715|CCDC25|55246|coiled-coil domain containing 25##NM_018246|CCDC25|55246|coiled-coil domain containing 25##AB007829|SCARA3|51435|scavenger receptor class A, member 3##AB007830|SCARA3|51435|scavenger receptor class A, member 3##NM_016240|SCARA3|51435|scavenger receptor class A, member 3##NM_182826|SCARA3|51435|scavenger receptor class A, member 3##BC075067|SCARA3|51435|scavenger receptor class A, member 3##BC075068|SCARA3|51435|scavenger receptor class A, member 3##BC060811|SCARA3|51435|scavenger receptor class A, member 3##AF306677|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##AF306678|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##AF306675|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##AY882862|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##NM_001017420|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##AK124215|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##AF306679|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##AL832666|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##BC017933|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##BC034641|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##AF189722|PBK|55872|PDZ binding kinase##AB027250|PBK|55872|PDZ binding kinase##AK027291|PBK|55872|PDZ binding kinase##AF237709|PBK|55872|PDZ binding kinase##BC015191|PBK|55872|PDZ binding kinase##AB027249|PBK|55872|PDZ binding kinase##NM_018492|PBK|55872|PDZ binding kinase##AK301836|PBK|55872|PDZ binding kinase	1.011288	denovo_WM_21:40:0.967
chr11	67250843	67250924	reg1001448.p1	4.339	+	TSC_hg19_v1_chr11_+_67250595 BC104797 BC104827 U31913 AB529203 EU446613	-271	+	NM_003977 TSC_hg19_v1_chr11_+_67250510 U78521	-371	+	AK310743 TSC_hg19_v1_chr11_-_67236717 AK296988 AY007143 BC013883 BC051854 BC125134 AK303342 NM_001078650 NM_001078651 NM_025124 AK025402	-14182	-	X98654 TSC_hg19_v1_chr11_-_67271900	20991	-	TSC_hg19_v1_chr11_-_67272835 AF334584 BC022230 NM_001130848 NM_004910	21950	-	TSC_hg19_v1_chr11_-_67275634 BT006909 CR457050 CR542042 AK310197 AK001498 BC016704 AF089814	24750	-	BC104797|AIP|9049|aryl hydrocarbon receptor interacting protein##BC104827|AIP|9049|aryl hydrocarbon receptor interacting protein##U31913|AIP|9049|aryl hydrocarbon receptor interacting protein##EU446613|AIP|9049|aryl hydrocarbon receptor interacting protein##NM_003977|AIP|9049|aryl hydrocarbon receptor interacting protein##U78521|AIP|9049|aryl hydrocarbon receptor interacting protein##AK310743|TMEM134|80194|transmembrane protein 134##AK296988|TMEM134|80194|transmembrane protein 134##AY007143|TMEM134|80194|transmembrane protein 134##BC013883|TMEM134|80194|transmembrane protein 134##BC051854|TMEM134|80194|transmembrane protein 134##BC125134|TMEM134|80194|transmembrane protein 134##AK303342|TMEM134|80194|transmembrane protein 134##NM_001078650|TMEM134|80194|transmembrane protein 134##NM_001078651|TMEM134|80194|transmembrane protein 134##NM_025124|TMEM134|80194|transmembrane protein 134##AK025402|TMEM134|80194|transmembrane protein 134##X98654|PITPNM1|9600|phosphatidylinositol transfer protein, membrane-associated 1##AF334584|PITPNM1|9600|phosphatidylinositol transfer protein, membrane-associated 1##BC022230|PITPNM1|9600|phosphatidylinositol transfer protein, membrane-associated 1##NM_001130848|PITPNM1|9600|phosphatidylinositol transfer protein, membrane-associated 1##NM_004910|PITPNM1|9600|phosphatidylinositol transfer protein, membrane-associated 1##BT006909|CDK2AP2|10263|cyclin-dependent kinase 2 associated protein 2##CR457050|CDK2AP2|10263|cyclin-dependent kinase 2 associated protein 2##CR542042|CDK2AP2|10263|cyclin-dependent kinase 2 associated protein 2##AK310197|CDK2AP2|10263|cyclin-dependent kinase 2 associated protein 2##AK001498|CDK2AP2|10263|cyclin-dependent kinase 2 associated protein 2##BC016704|CDK2AP2|10263|cyclin-dependent kinase 2 associated protein 2##AF089814|CDK2AP2|10263|cyclin-dependent kinase 2 associated protein 2	0.051118	
chr2	102352320	102352437	reg1001380.p1	4.339	+	TSC_hg19_v1_chr2_+_102314168 NM_001242560 NM_004834 NM_145686 BC064691 AK296396 AF096300 NM_001242559 NM_145687 AB384511 AY212247 AY834276	-38026	+	AK131289 AK298610 NM_001145664 TSC_hg19_v1_chr2_-_102091212	-261185	-	TSC_hg19_v1_chr2_-_102003966 BC032949 BC047514 NM_153836 AB046109	-348389	-	TSC_hg19_v1_chr2_+_102508334 BC045694	155964	+	TSC_hg19_v1_chr2_+_102508389 BC054038 BC010909 BC040077 BC065036 BC051791	156154	+	BC039031 NM_004633 AK130412 AK309161 TSC_hg19_v1_chr2_+_102608421	255985	+	NM_001242560|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_004834|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145686|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC064691|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AK296396|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AF096300|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_001242559|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145687|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY212247|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY834276|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AK131289|RFX8|731220|regulatory factor X, 8##AK298610|RFX8|731220|regulatory factor X, 8##NM_001145664|RFX8|731220|regulatory factor X, 8##BC032949|CREG2|200407|cellular repressor of E1A-stimulated genes 2##BC047514|CREG2|200407|cellular repressor of E1A-stimulated genes 2##NM_153836|CREG2|200407|cellular repressor of E1A-stimulated genes 2##AB046109|CREG2|200407|cellular repressor of E1A-stimulated genes 2##BC045694|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC054038|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC010909|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC040077|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC065036|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC051791|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC039031|IL1R2|7850|interleukin 1 receptor, type II##NM_004633|IL1R2|7850|interleukin 1 receptor, type II##AK130412|IL1R2|7850|interleukin 1 receptor, type II##AK309161|IL1R2|7850|interleukin 1 receptor, type II	0.03475	
chr19	4969000	4969115	reg1000079.p2	4.336	+	TSC_hg19_v1_chr19_-_4916833 AK097879	-52229	-	TSC_hg19_v1_chr19_+_4910386 AB177624 EF560733 NM_013282	-58605	+	TSC_hg19_v1_chr19_+_4910185 AK289389	-58879	+	NM_015015 TSC_hg19_v1_chr19_+_4969124	67	+	TSC_hg19_v1_chr19_+_4969167 AB020683 BC063889	116	+	TSC_hg19_v1_chr19_+_5032899 CU687848	63842	+	AB177624|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##EF560733|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##NM_013282|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##AK289389|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##NM_015015|KDM4B|23030|lysine (K)-specific demethylase 4B##AB020683|KDM4B|23030|lysine (K)-specific demethylase 4B##BC063889|KDM4B|23030|lysine (K)-specific demethylase 4B	1.56212	denovo_WM_21:8:0.811	denovo_WM_21:-21:0.751
chr6	145942924	145942997	reg1001524.p2	4.334	+	NM_007124 X69086	-1330042	+	TSC_hg19_v1_chr6_+_144607461 AK292506	-1335480	+	TSC_hg19_v1_chr6_+_144471653 NM_003764 AF044309 BC033519 AF071504	-1471239	+	AK124757 TSC_hg19_v1_chr6_+_146056061	113074	+	TSC_hg19_v1_chr6_-_146056437 AJ130763 AJ130764	113453	-	AF454494 TSC_hg19_v1_chr6_-_146056628 AF454493 BC005286 AF084535	113641	-	NM_007124|UTRN|7402|utrophin##X69086|UTRN|7402|utrophin##AK292506|UTRN|7402|utrophin##NM_003764|STX11|8676|syntaxin 11##AF044309|STX11|8676|syntaxin 11##BC033519|STX11|8676|syntaxin 11##AF071504|STX11|8676|syntaxin 11##AK124757|LOC100507557|100507557|uncharacterized LOC100507557##AJ130763|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AJ130764|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AF454494|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AF454493|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##BC005286|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AF084535|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)	0.015502	
chr19	58330954	58331064	reg1001064.p1	4.332	+	AK097041 AK293445 NM_024762	-4729	-	BC051325 TSC_hg19_v1_chr19_+_58281063 AK300419 BC124558 BC041660 AB527919	-49880	+	AK302151 TSC_hg19_v1_chr19_+_58281007 NM_001077426 NM_001204814 NM_017652 AK095993 BC027922 AK000077 AB074270	-49992	+	TSC_hg19_v1_chr19_+_58331098 AK095812 AK303856 U71363	78	+	AK122919 NM_001204818 AK299091	10661	+	NM_001204817 NM_032828 TSC_hg19_v1_chr19_+_58361208	30186	+	AK097041|ZNF552|79818|zinc finger protein 552##AK293445|ZNF552|79818|zinc finger protein 552##NM_024762|ZNF552|79818|zinc finger protein 552##BC051325|ZNF586|54807|zinc finger protein 586##AK300419|ZNF586|54807|zinc finger protein 586##BC124558|ZNF586|54807|zinc finger protein 586##BC041660|ZNF586|54807|zinc finger protein 586##AK302151|ZNF586|54807|zinc finger protein 586##NM_001077426|ZNF586|54807|zinc finger protein 586##NM_001204814|ZNF586|54807|zinc finger protein 586##NM_017652|ZNF586|54807|zinc finger protein 586##AK095993|ZNF586|54807|zinc finger protein 586##BC027922|ZNF586|54807|zinc finger protein 586##AK000077|ZNF586|54807|zinc finger protein 586##AB074270|ZNF586|54807|zinc finger protein 586##U71363|LOC100293516|100293516|zinc finger protein##NM_001204818|LOC100293516|100293516|zinc finger protein##AK299091|LOC100293516|100293516|zinc finger protein##NM_001204817|ZNF587|84914|zinc finger protein 587##NM_032828|ZNF587|84914|zinc finger protein 587	0.908253	denovo_WM_21:21:0.908
chr3	48701545	48701623	reg1001278.p1	4.331	+	TSC_hg19_v1_chr3_-_48700322 AF231023 NM_001407	-1249	-	AK056237 NM_022911 NM_134263 NM_134426 TSC_hg19_v1_chr3_-_48672944	-28637	-	TSC_hg19_v1_chr3_-_48672883 DQ891721 EU176609 EU832127 AF288410 AF416721 AK297695 BC017697 AB033288	-28737	-	AB384897 CU677561 BC016052 BC006255 TSC_hg19_v1_chr3_-_48723349 AF303581 BC026280 AF178432 AJ242655 AY453794 NM_016453 NM_184231	21711	-	TSC_hg19_v1_chr3_-_48754622 BC019694 AK291501 AY007091 BC001864 BC065533 BC004469 AK304714 AK315204 AK024045 AK290526 AL137514 BX537544 NM_001005909 NM_001005910 NM_001005911 NM_001146178 NM_001146179 NM_001190316 NM_001190317 NM_016291	53065	-	BT007225 AB464095 CU678176 TSC_hg19_v1_chr3_-_48885175	183525	-	AF231023|CELSR3|1951|cadherin, EGF LAG seven-pass G-type receptor 3 (flamingo homolog, Drosophila)##NM_001407|CELSR3|1951|cadherin, EGF LAG seven-pass G-type receptor 3 (flamingo homolog, Drosophila)##AK056237|SLC26A6|65010|solute carrier family 26, member 6##NM_022911|SLC26A6|65010|solute carrier family 26, member 6##NM_134263|SLC26A6|65010|solute carrier family 26, member 6##NM_134426|SLC26A6|65010|solute carrier family 26, member 6##DQ891721|SLC26A6|65010|solute carrier family 26, member 6##EU176609|SLC26A6|65010|solute carrier family 26, member 6##EU832127|SLC26A6|65010|solute carrier family 26, member 6##AF288410|SLC26A6|65010|solute carrier family 26, member 6##AF416721|SLC26A6|65010|solute carrier family 26, member 6##AK297695|SLC26A6|65010|solute carrier family 26, member 6##BC017697|SLC26A6|65010|solute carrier family 26, member 6##AB033288|SLC26A6|65010|solute carrier family 26, member 6##BC016052|NCKIPSD|51517|NCK interacting protein with SH3 domain##BC006255|NCKIPSD|51517|NCK interacting protein with SH3 domain##AF303581|NCKIPSD|51517|NCK interacting protein with SH3 domain##BC026280|NCKIPSD|51517|NCK interacting protein with SH3 domain##AF178432|NCKIPSD|51517|NCK interacting protein with SH3 domain##AJ242655|NCKIPSD|51517|NCK interacting protein with SH3 domain##AY453794|NCKIPSD|51517|NCK interacting protein with SH3 domain##NM_016453|NCKIPSD|51517|NCK interacting protein with SH3 domain##NM_184231|NCKIPSD|51517|NCK interacting protein with SH3 domain##BC019694|IP6K2|51447|inositol hexakisphosphate kinase 2##AK291501|IP6K2|51447|inositol hexakisphosphate kinase 2##AY007091|IP6K2|51447|inositol hexakisphosphate kinase 2##BC001864|IP6K2|51447|inositol hexakisphosphate kinase 2##BC065533|IP6K2|51447|inositol hexakisphosphate kinase 2##BC004469|IP6K2|51447|inositol hexakisphosphate kinase 2##AK304714|IP6K2|51447|inositol hexakisphosphate kinase 2##AK315204|IP6K2|51447|inositol hexakisphosphate kinase 2##AK024045|IP6K2|51447|inositol hexakisphosphate kinase 2##AK290526|IP6K2|51447|inositol hexakisphosphate kinase 2##AL137514|IP6K2|51447|inositol hexakisphosphate kinase 2##BX537544|IP6K2|51447|inositol hexakisphosphate kinase 2##NM_001005909|IP6K2|51447|inositol hexakisphosphate kinase 2##NM_001005910|IP6K2|51447|inositol hexakisphosphate kinase 2##NM_001005911|IP6K2|51447|inositol hexakisphosphate kinase 2##NM_001146178|IP6K2|51447|inositol hexakisphosphate kinase 2##NM_001146179|IP6K2|51447|inositol hexakisphosphate kinase 2##NM_001190316|IP6K2|51447|inositol hexakisphosphate kinase 2##NM_001190317|IP6K2|51447|inositol hexakisphosphate kinase 2##NM_016291|IP6K2|51447|inositol hexakisphosphate kinase 2##BT007225|PRKAR2A|5576|protein kinase, cAMP-dependent, regulatory, type II, alpha	0.017582	
chr12	32746835	32746926	reg1001314.p2	4.322	+	TSC_hg19_v1_chr12_+_32687260 AK303334	-59617	+	BC039708 BC063403 NM_139241 BC096746 AK057294 BC045552	-91841	+	AK313430 AK290188 NM_001003398 NM_001714 U90028 BC136372 TSC_hg19_v1_chr12_+_32260263	-486707	+	TSC_hg19_v1_chr12_+_32832187 AK302565 NM_005690 NM_012062 NM_012063 AK311606	85277	+	TSC_hg19_v1_chr12_+_32832234 AK299926 AF000430 AK291094 AK293290 AK294533 AK298568 BC107763 AB209070 AB006965 BC024590	85357	+	TSC_hg19_v1_chr12_+_32832277 AF061795 AF151685 AB384831 CU692924 DQ891544 DQ894732 BC000136	85443	+	AK303334|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##BC039708|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##BC063403|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##NM_139241|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##BC096746|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##AK057294|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##BC045552|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##AK313430|BICD1|636|bicaudal D homolog 1 (Drosophila)##AK290188|BICD1|636|bicaudal D homolog 1 (Drosophila)##NM_001003398|BICD1|636|bicaudal D homolog 1 (Drosophila)##NM_001714|BICD1|636|bicaudal D homolog 1 (Drosophila)##U90028|BICD1|636|bicaudal D homolog 1 (Drosophila)##BC136372|BICD1|636|bicaudal D homolog 1 (Drosophila)##AK302565|DNM1L|10059|dynamin 1-like##NM_005690|DNM1L|10059|dynamin 1-like##NM_012062|DNM1L|10059|dynamin 1-like##NM_012063|DNM1L|10059|dynamin 1-like##AK311606|DNM1L|10059|dynamin 1-like##AK299926|DNM1L|10059|dynamin 1-like##AF000430|DNM1L|10059|dynamin 1-like##AK291094|DNM1L|10059|dynamin 1-like##AK293290|DNM1L|10059|dynamin 1-like##AK294533|DNM1L|10059|dynamin 1-like##AK298568|DNM1L|10059|dynamin 1-like##BC107763|DNM1L|10059|dynamin 1-like##AB209070|DNM1L|10059|dynamin 1-like##AB006965|DNM1L|10059|dynamin 1-like##BC024590|DNM1L|10059|dynamin 1-like##AF061795|DNM1L|10059|dynamin 1-like##AF151685|DNM1L|10059|dynamin 1-like##DQ891544|DNM1L|10059|dynamin 1-like##DQ894732|DNM1L|10059|dynamin 1-like	0.0	
chr19	20607752	20607835	reg1001100.p1	4.322	+	AK126842 BC022411 TSC_hg19_v1_chr19_-_20607776 BC036006 BC016785 BC017970	-25	-	TSC_hg19_v1_chr19_+_20277998 BC027608 BC008936 BC117268 NM_052852	-329757	+	TSC_hg19_v1_chr19_+_20188813 NM_007138 AK298173 M61870 BC137211	-418956	+	BC015765 TSC_hg19_v1_chr19_-_20748588 NM_001159293	140792	-	BC150651 AK096221 CR749233 TSC_hg19_v1_chr19_-_20844378 BC007116 BX648764 AK131567 BC107803 NM_001076675 NM_145297	236569	-	BC067843 TSC_hg19_v1_chr19_+_20959109	351316	+	BC022411|ZNF826P|664701|zinc finger protein 826, pseudogene##BC036006|ZNF826P|664701|zinc finger protein 826, pseudogene##BC016785|ZNF826P|664701|zinc finger protein 826, pseudogene##BC017970|ZNF826P|664701|zinc finger protein 826, pseudogene##BC027608|ZNF486|90649|zinc finger protein 486##BC008936|ZNF486|90649|zinc finger protein 486##BC117268|ZNF486|90649|zinc finger protein 486##NM_052852|ZNF486|90649|zinc finger protein 486##NM_007138|ZNF90|7643|zinc finger protein 90##AK298173|ZNF90|7643|zinc finger protein 90##M61870|ZNF90|7643|zinc finger protein 90##BC137211|ZNF90|7643|zinc finger protein 90##BC015765|ZNF737|100129842|zinc finger protein 737##NM_001159293|ZNF737|100129842|zinc finger protein 737##AK096221|ZNF626|199777|zinc finger protein 626##CR749233|ZNF626|199777|zinc finger protein 626##BC007116|ZNF626|199777|zinc finger protein 626##BX648764|ZNF626|199777|zinc finger protein 626##BC107803|ZNF626|199777|zinc finger protein 626##NM_001076675|ZNF626|199777|zinc finger protein 626##NM_145297|ZNF626|199777|zinc finger protein 626	0.847964	denovo_WM_21:26:0.848
chr11	50659988	50660133	reg1001442.p1	4.321	+	BC136850 BC136851 NM_001005270	-655990	-	BC137005 NM_001001955	-686118	+	TSC_hg19_v1_chr11_-_49230053 DQ088979 AF176574 BC025672 AK312366 AK295368 AK295470 AK300532 M99487 NM_001014986 NM_001193471 NM_001193472 NM_001193473 NM_004476 S76978	-1429953	-	BC140750 NM_001005272	752387	-	NM_001004703	855221	+	AF521869 BC001862 NM_024114	4369597	+	BC136850|OR4C12|283093|olfactory receptor, family 4, subfamily C, member 12##BC136851|OR4C12|283093|olfactory receptor, family 4, subfamily C, member 12##NM_001005270|OR4C12|283093|olfactory receptor, family 4, subfamily C, member 12##BC137005|OR4C13|283092|olfactory receptor, family 4, subfamily C, member 13##NM_001001955|OR4C13|283092|olfactory receptor, family 4, subfamily C, member 13##DQ088979|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AF176574|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##BC025672|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AK312366|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AK295368|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AK295470|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AK300532|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##M99487|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_001014986|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_001193471|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_001193472|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_001193473|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_004476|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##S76978|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##BC140750|OR4A5|81318|olfactory receptor, family 4, subfamily A, member 5##NM_001005272|OR4A5|81318|olfactory receptor, family 4, subfamily A, member 5##NM_001004703|OR4C46|119749|olfactory receptor, family 4, subfamily C, member 46##AF521869|TRIM48|79097|tripartite motif containing 48##BC001862|TRIM48|79097|tripartite motif containing 48##NM_024114|TRIM48|79097|tripartite motif containing 48	0.0	
chr1	247289621	247289712	reg1001103.p1	4.313	+	TSC_hg19_v1_chr1_-_247275541 AK127619 NM_207401	-14044	-	TSC_hg19_v1_chr1_-_247267631 AK022668 AX721155 AK056020 AX721139 BC015312 NM_001142572 NM_024804	-22005	-	TSC_hg19_v1_chr1_-_247242116 AK126366 NM_001204220 NM_033213	-47553	-	BC032514 BC096349 BC096350 BC096351 BC099661 BC013605 AK054647 NM_001243740 NM_003431	45618	-	BC126341 BC126367 NM_173858	129657	+	TSC_hg19_v1_chr1_-_247494994 BC007263 NM_032752	205351	-	AK127619|C1orf229|388759|chromosome 1 open reading frame 229##NM_207401|C1orf229|388759|chromosome 1 open reading frame 229##AK022668|ZNF669|79862|zinc finger protein 669##AK056020|ZNF669|79862|zinc finger protein 669##BC015312|ZNF669|79862|zinc finger protein 669##NM_001142572|ZNF669|79862|zinc finger protein 669##NM_024804|ZNF669|79862|zinc finger protein 669##AK126366|ZNF670-ZNF695|100533111|ZNF670-ZNF695 readthrough##NM_001204220|ZNF670|93474|zinc finger protein 670##NM_033213|ZNF670|93474|zinc finger protein 670##BC032514|ZNF124|7678|zinc finger protein 124##BC096349|ZNF124|7678|zinc finger protein 124##BC096350|ZNF124|7678|zinc finger protein 124##BC096351|ZNF124|7678|zinc finger protein 124##BC099661|ZNF124|7678|zinc finger protein 124##BC013605|ZNF124|7678|zinc finger protein 124##AK054647|ZNF124|7678|zinc finger protein 124##NM_001243740|ZNF124|7678|zinc finger protein 124##NM_003431|ZNF124|7678|zinc finger protein 124##BC126341|VN1R5|317705|vomeronasal 1 receptor 5 (gene/pseudogene)##BC126367|VN1R5|317705|vomeronasal 1 receptor 5 (gene/pseudogene)##NM_173858|VN1R5|317705|vomeronasal 1 receptor 5 (gene/pseudogene)##BC007263|ZNF496|84838|zinc finger protein 496##NM_032752|ZNF496|84838|zinc finger protein 496	0.069218	
chr21	17259933	17260004	reg1001269.p1	4.311	+	TSC_hg19_v1_chr21_+_17102383 NM_013396 AF134213 BC015930 CU677515 CU687288 FJ763652	-157427	+	TSC_hg19_v1_chr21_+_17102300 AF170562 BC075792	-157643	+	AK289786 NM_003489 TSC_hg19_v1_chr21_-_16437302	-822751	-	TSC_hg19_v1_chr21_+_18885168 NM_001207063 NM_001207064 NM_001207065 NM_001207066 NM_001338	1625195	+	TSC_hg19_v1_chr21_+_18885364 BC003684 AK313526 BC010536 Y07593 DQ891181 DQ894363 AF124598 AY072910 AY072911 AY072912 BT019876 GU474812 U90716	1625403	+	D64110 TSC_hg19_v1_chr21_-_18985177 BC011957	1725172	-	NM_013396|USP25|29761|ubiquitin specific peptidase 25##AF134213|USP25|29761|ubiquitin specific peptidase 25##BC015930|USP25|29761|ubiquitin specific peptidase 25##FJ763652|USP25|29761|ubiquitin specific peptidase 25##AF170562|USP25|29761|ubiquitin specific peptidase 25##BC075792|USP25|29761|ubiquitin specific peptidase 25##AK289786|NRIP1|8204|nuclear receptor interacting protein 1##NM_003489|NRIP1|8204|nuclear receptor interacting protein 1##NM_001207063|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001207064|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001207065|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001207066|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001338|CXADR|1525|coxsackie virus and adenovirus receptor##BC003684|CXADR|1525|coxsackie virus and adenovirus receptor##AK313526|CXADR|1525|coxsackie virus and adenovirus receptor##BC010536|CXADR|1525|coxsackie virus and adenovirus receptor##Y07593|CXADR|1525|coxsackie virus and adenovirus receptor##DQ891181|CXADR|1525|coxsackie virus and adenovirus receptor##DQ894363|CXADR|1525|coxsackie virus and adenovirus receptor##AF124598|CXADR|1525|coxsackie virus and adenovirus receptor##AY072910|CXADR|1525|coxsackie virus and adenovirus receptor##AY072911|CXADR|1525|coxsackie virus and adenovirus receptor##AY072912|CXADR|1525|coxsackie virus and adenovirus receptor##BT019876|CXADR|1525|coxsackie virus and adenovirus receptor##GU474812|CXADR|1525|coxsackie virus and adenovirus receptor##U90716|CXADR|1525|coxsackie virus and adenovirus receptor##D64110|BTG3|10950|BTG family, member 3##BC011957|BTG3|10950|BTG family, member 3	0.067774	
chr20	62289973	62290063	reg1001424.p2	4.310	+	TSC_hg19_v1_chr20_+_62289667 AK302508 AK304798 AK299332 BC000673	-337	+	AF217795 NM_016434 NM_032957	-856	+	DQ893121 DQ896397 BC047671 BC021084 BC032527 AF069709 BC056873 TSC_hg19_v1_chr20_-_62284781 AK074860 NM_015894 AK310010 BC009381 BC025234	-5258	-	TSC_hg19_v1_chr20_+_62321100 AL080127	31130	+	TSC_hg19_v1_chr20_+_62328005 NM_003823 AF104419 AY358279 BC017065	37993	+	AF217794 TSC_hg19_v1_chr20_+_62328078 AY124378 AY124379 AB590899 AF134240	38076	+	AK302508|RTEL1|51750|regulator of telomere elongation helicase 1##AK304798|RTEL1|51750|regulator of telomere elongation helicase 1##AK299332|RTEL1|51750|regulator of telomere elongation helicase 1##AF217795|RTEL1|51750|regulator of telomere elongation helicase 1##NM_016434|RTEL1|51750|regulator of telomere elongation helicase 1##NM_032957|RTEL1|51750|regulator of telomere elongation helicase 1##DQ893121|STMN3|50861|stathmin-like 3##DQ896397|STMN3|50861|stathmin-like 3##BC047671|STMN3|50861|stathmin-like 3##BC032527|STMN3|50861|stathmin-like 3##AF069709|STMN3|50861|stathmin-like 3##BC056873|STMN3|50861|stathmin-like 3##AK074860|STMN3|50861|stathmin-like 3##NM_015894|STMN3|50861|stathmin-like 3##AK310010|STMN3|50861|stathmin-like 3##BC009381|STMN3|50861|stathmin-like 3##BC025234|STMN3|50861|stathmin-like 3##AL080127|RTEL1|51750|regulator of telomere elongation helicase 1##NM_003823|TNFRSF6B|8771|tumor necrosis factor receptor superfamily, member 6b, decoy##AF104419|TNFRSF6B|8771|tumor necrosis factor receptor superfamily, member 6b, decoy##AY358279|TNFRSF6B|8771|tumor necrosis factor receptor superfamily, member 6b, decoy##BC017065|TNFRSF6B|8771|tumor necrosis factor receptor superfamily, member 6b, decoy##AF134240|TNFRSF6B|8771|tumor necrosis factor receptor superfamily, member 6b, decoy	0.0	
chrX	61914764	61914872	reg1001253.p1	4.307	+	EU446736 TSC_hg19_v1_chrX_-_57936884 BC059356 AK292686 AK122815 NM_007156	-3977859	-	TSC_hg19_v1_chrX_+_57618452 AK289766 AB384714	-4296358	+	NM_007157	-4296550	+	BC112360 TSC_hg19_v1_chrX_-_62571212 AK126931 AL833314 NM_001012968	656381	-	TSC_hg19_v1_chrX_-_62648209 BC048208 AK129670	733449	-	TSC_hg19_v1_chrX_-_62780938 AK001756 AL080202	866049	-	EU446736|ZXDA|7789|zinc finger, X-linked, duplicated A##BC059356|ZXDA|7789|zinc finger, X-linked, duplicated A##AK292686|ZXDA|7789|zinc finger, X-linked, duplicated A##AK122815|ZXDA|7789|zinc finger, X-linked, duplicated A##NM_007156|ZXDA|7789|zinc finger, X-linked, duplicated A##AK289766|ZXDB|158586|zinc finger, X-linked, duplicated B##NM_007157|ZXDB|158586|zinc finger, X-linked, duplicated B##BC112360|SPIN4|139886|spindlin family, member 4##AK126931|SPIN4|139886|spindlin family, member 4##AL833314|SPIN4|139886|spindlin family, member 4##NM_001012968|SPIN4|139886|spindlin family, member 4##BC048208|LOC92249|92249|uncharacterized LOC92249##AK129670|LOC92249|92249|uncharacterized LOC92249##AK001756|LOC92249|92249|uncharacterized LOC92249##AL080202|LOC92249|92249|uncharacterized LOC92249	0.0	
chr7	106809031	106809215	reg1000048.p1	4.300	+	TSC_hg19_v1_chr7_+_106685154 BC075800 M31158 NM_002736 AK128639 AK291441 AB384742 AM392728 AM392771 AM393258 AM393700 CU687290	-123920	+	TSC_hg19_v1_chr7_+_106505893 NM_002649 X83368	-303194	+	TSC_hg19_v1_chr7_+_106505782 AK313753 BX648341 BC035683	-303349	+	AK295910 NM_001244262 TSC_hg19_v1_chr7_+_106809447 AK298504 BC017069 NM_012257	316	+	NM_005295 AK122621 AK307393	301379	+	TSC_hg19_v1_chr7_-_107204366 HQ258000 AF058718	395287	-	BC075800|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##M31158|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##NM_002736|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AK128639|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AK291441|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM392728|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM392771|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM393258|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM393700|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##NM_002649|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##X83368|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##AK313753|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##BX648341|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##BC035683|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##AK295910|HBP1|26959|HMG-box transcription factor 1##NM_001244262|HBP1|26959|HMG-box transcription factor 1##AK298504|HBP1|26959|HMG-box transcription factor 1##BC017069|HBP1|26959|HMG-box transcription factor 1##NM_012257|HBP1|26959|HMG-box transcription factor 1##NM_005295|GPR22|2845|G protein-coupled receptor 22##AK122621|GPR22|2845|G protein-coupled receptor 22##AK307393|GPR22|2845|G protein-coupled receptor 22##HQ258000|COG5|10466|component of oligomeric golgi complex 5##AF058718|COG5|10466|component of oligomeric golgi complex 5	0.221763	
chr16	4666285	4666378	reg1000959.p1	4.295	+	BC040160 TSC_hg19_v1_chr16_-_4665044	-1303	-	TSC_hg19_v1_chr16_-_4664901 BC062534 NM_145253	-1398	-	TSC_hg19_v1_chr16_-_4664870 CU687554 AF370434 BC012018 AK055785 BC025327 BC008681	-1497	-	TSC_hg19_v1_chr16_+_4674826 NM_001142289 NM_001142290 NM_001142291 NM_015246	8492	+	TSC_hg19_v1_chr16_+_4674861 AK299052 BC050389 AB011116	8531	+	AB383902 CU690664 EF471397 EF471398 TSC_hg19_v1_chr16_+_4675003	8657	+	BC040160|FAM100A|124402|family with sequence similarity 100, member A##BC062534|FAM100A|124402|family with sequence similarity 100, member A##NM_145253|FAM100A|124402|family with sequence similarity 100, member A##AF370434|FAM100A|124402|family with sequence similarity 100, member A##BC012018|FAM100A|124402|family with sequence similarity 100, member A##AK055785|FAM100A|124402|family with sequence similarity 100, member A##BC025327|FAM100A|124402|family with sequence similarity 100, member A##BC008681|FAM100A|124402|family with sequence similarity 100, member A##NM_001142289|MGRN1|23295|mahogunin, ring finger 1##NM_001142290|MGRN1|23295|mahogunin, ring finger 1##NM_001142291|MGRN1|23295|mahogunin, ring finger 1##NM_015246|MGRN1|23295|mahogunin, ring finger 1##AK299052|MGRN1|23295|mahogunin, ring finger 1##BC050389|MGRN1|23295|mahogunin, ring finger 1##AB011116|MGRN1|23295|mahogunin, ring finger 1##EF471397|MGRN1|23295|mahogunin, ring finger 1##EF471398|MGRN1|23295|mahogunin, ring finger 1	0.222715	denovo_WM_21:30:0.223
chr6	114158552	114158626	reg1001752.p1	4.292	+	AK122906 NM_001013734	-1490058	+	TSC_hg19_v1_chr6_-_112575881 BC066552	-1582694	-	TSC_hg19_v1_chr6_-_112575770 AB210027 X91171 NM_001105206 NM_001105207 NM_001105208 NM_001105209 NM_002290	-1582784	-	TSC_hg19_v1_chr6_+_114178543 AK074526 NM_002356 BC013004 BC028284 BC068059 D10522 M68956 BC089040 EU832331 EU832416 AB463910	20145	+	TSC_hg19_v1_chr6_-_114292291 U31814 AK097376	133683	-	TSC_hg19_v1_chr6_-_114292324 BC031055 BC013141 AK296856 NM_001527	133747	-	AK122906|RFPL4B|442247|ret finger protein-like 4B##NM_001013734|RFPL4B|442247|ret finger protein-like 4B##BC066552|LAMA4|3910|laminin, alpha 4##AB210027|LAMA4|3910|laminin, alpha 4##X91171|LAMA4|3910|laminin, alpha 4##NM_001105206|LAMA4|3910|laminin, alpha 4##NM_001105207|LAMA4|3910|laminin, alpha 4##NM_001105208|LAMA4|3910|laminin, alpha 4##NM_001105209|LAMA4|3910|laminin, alpha 4##NM_002290|LAMA4|3910|laminin, alpha 4##AK074526|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##NM_002356|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##BC013004|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##BC028284|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##BC068059|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##D10522|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##M68956|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##BC089040|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##EU832331|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##EU832416|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##U31814|HDAC2|3066|histone deacetylase 2##AK097376|HDAC2|3066|histone deacetylase 2##BC031055|HDAC2|3066|histone deacetylase 2##BC013141|HDAC2|3066|histone deacetylase 2##AK296856|HDAC2|3066|histone deacetylase 2##NM_001527|HDAC2|3066|histone deacetylase 2	0.0	
chr1	1243400	1243537	reg1001018.p1	4.290	+	TSC_hg19_v1_chr1_-_1243285 BC051194 NM_030649	-77	-	NM_001130413 BC040882 AK127357	-27577	+	TSC_hg19_v1_chr1_+_1209415 DQ898177	-34068	+	TSC_hg19_v1_chr1_+_1243987 AK075292 BC034304 NM_153339 AK298218	530	+	AB463529 AM393218 CR533557 AK056652 AK022675 TSC_hg19_v1_chr1_-_1260041 BC042444 AK092190 AK297350 BC008041 BC020199 BC007978 AK291387 AK021939 AK058018 AL136813 NM_017871 AK023356 AK027767	16556	-	NM_001029885 TSC_hg19_v1_chr1_+_1260181	16696	+	BC051194|ACAP3|116983|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3##NM_030649|ACAP3|116983|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3##NM_001130413|SCNN1D|6339|sodium channel, nonvoltage-gated 1, delta##BC040882|SCNN1D|6339|sodium channel, nonvoltage-gated 1, delta##AK127357|SCNN1D|6339|sodium channel, nonvoltage-gated 1, delta##AK075292|PUSL1|126789|pseudouridylate synthase-like 1##BC034304|PUSL1|126789|pseudouridylate synthase-like 1##NM_153339|PUSL1|126789|pseudouridylate synthase-like 1##AK298218|PUSL1|126789|pseudouridylate synthase-like 1##AM393218|CPSF3L|54973|cleavage and polyadenylation specific factor 3-like##CR533557|CPSF3L|54973|cleavage and polyadenylation specific factor 3-like##AK056652|CPSF3L|54973|cleavage and polyadenylation specific factor 3-like##AK022675|CPSF3L|54973|cleavage and polyadenylation specific factor 3-like##BC042444|CPSF3L|54973|cleavage and polyadenylation specific factor 3-like##AK092190|CPSF3L|54973|cleavage and polyadenylation specific factor 3-like##AK297350|CPSF3L|54973|cleavage and polyadenylation specific factor 3-like##BC008041|CPSF3L|54973|cleavage and polyadenylation specific factor 3-like##BC020199|CPSF3L|54973|cleavage and polyadenylation specific factor 3-like##BC007978|CPSF3L|54973|cleavage and polyadenylation specific factor 3-like##AK291387|CPSF3L|54973|cleavage and polyadenylation specific factor 3-like##AK021939|CPSF3L|54973|cleavage and polyadenylation specific factor 3-like##AK058018|CPSF3L|54973|cleavage and polyadenylation specific factor 3-like##AL136813|CPSF3L|54973|cleavage and polyadenylation specific factor 3-like##NM_017871|CPSF3L|54973|cleavage and polyadenylation specific factor 3-like##AK023356|CPSF3L|54973|cleavage and polyadenylation specific factor 3-like##AK027767|CPSF3L|54973|cleavage and polyadenylation specific factor 3-like##NM_001029885|GLTPD1|80772|glycolipid transfer protein domain containing 1	0.0	
chr3	38178691	38178841	reg1001346.p1	4.290	+	TSC_hg19_v1_chr3_-_38178584 AK316551 AK301056 BC039837 BC000635 NM_001130410 NM_001607	-110	-	TSC_hg19_v1_chr3_-_38178570 BC025780	-194	-	AF035295 TSC_hg19_v1_chr3_-_38178569 CU677013 CU680144 DQ891298 DQ893346 DQ894482 AK303251 AB529164 BC014474 X12966 X14813 AK025138 AK293716 BC011977	-250	-	NM_001172566 NM_001172567 NM_001172568 NM_001172569 NM_002468 TSC_hg19_v1_chr3_+_38180156 AK296716 U84408 BX537602 AK298650 AK300448 AK296570 AK298666 AB463903 AK300051 BC013589 AL832906 AB446470 AK304676 BT007376	1318	+	TSC_hg19_v1_chr3_+_38206993 AB017642 NM_005109 BC008726	28275	+	TSC_hg19_v1_chr3_+_38207137 AK309634	28379	+	AK316551|ACAA1|30|acetyl-CoA acyltransferase 1##AK301056|ACAA1|30|acetyl-CoA acyltransferase 1##BC039837|ACAA1|30|acetyl-CoA acyltransferase 1##BC000635|ACAA1|30|acetyl-CoA acyltransferase 1##NM_001130410|ACAA1|30|acetyl-CoA acyltransferase 1##NM_001607|ACAA1|30|acetyl-CoA acyltransferase 1##BC025780|ACAA1|30|acetyl-CoA acyltransferase 1##AF035295|ACAA1|30|acetyl-CoA acyltransferase 1##DQ891298|ACAA1|30|acetyl-CoA acyltransferase 1##DQ893346|ACAA1|30|acetyl-CoA acyltransferase 1##DQ894482|ACAA1|30|acetyl-CoA acyltransferase 1##AK303251|ACAA1|30|acetyl-CoA acyltransferase 1##BC014474|ACAA1|30|acetyl-CoA acyltransferase 1##X12966|ACAA1|30|acetyl-CoA acyltransferase 1##X14813|ACAA1|30|acetyl-CoA acyltransferase 1##AK025138|ACAA1|30|acetyl-CoA acyltransferase 1##AK293716|ACAA1|30|acetyl-CoA acyltransferase 1##BC011977|ACAA1|30|acetyl-CoA acyltransferase 1##NM_001172566|MYD88|4615|myeloid differentiation primary response gene (88)##NM_001172567|MYD88|4615|myeloid differentiation primary response gene (88)##NM_001172568|MYD88|4615|myeloid differentiation primary response gene (88)##NM_001172569|MYD88|4615|myeloid differentiation primary response gene (88)##NM_002468|MYD88|4615|myeloid differentiation primary response gene (88)##AK296716|MYD88|4615|myeloid differentiation primary response gene (88)##U84408|MYD88|4615|myeloid differentiation primary response gene (88)##BX537602|MYD88|4615|myeloid differentiation primary response gene (88)##AK298650|MYD88|4615|myeloid differentiation primary response gene (88)##AK300448|MYD88|4615|myeloid differentiation primary response gene (88)##AK296570|MYD88|4615|myeloid differentiation primary response gene (88)##AK298666|MYD88|4615|myeloid differentiation primary response gene (88)##AK300051|MYD88|4615|myeloid differentiation primary response gene (88)##BC013589|MYD88|4615|myeloid differentiation primary response gene (88)##AL832906|MYD88|4615|myeloid differentiation primary response gene (88)##AB446470|MYD88|4615|myeloid differentiation primary response gene (88)##AK304676|MYD88|4615|myeloid differentiation primary response gene (88)##BT007376|MYD88|4615|myeloid differentiation primary response gene (88)##AB017642|OXSR1|9943|oxidative-stress responsive 1##NM_005109|OXSR1|9943|oxidative-stress responsive 1##BC008726|OXSR1|9943|oxidative-stress responsive 1##AK309634|OXSR1|9943|oxidative-stress responsive 1	0.729009	denovo_WM_21:74:0.582
chr6	122720428	122720601	reg1000755.p1	4.289	+	NM_000165 AK312324 AK297764 AK223289 AK294670 AK297402 TSC_hg19_v1_chr6_+_121756792 AK309377 AK316159 AK295460 AK297761 AK309490 M65188 X52947 BC026329	-963689	+	TSC_hg19_v1_chr6_-_121655627 AK131446 AK091554 AX747057 NM_152730	-1064871	-	TSC_hg19_v1_chr6_-_119670927 BC065827 AK025599 AK307383 NM_005907	-3049593	-	TSC_hg19_v1_chr6_+_122720699 NM_001135564 NM_001243094 NM_004506	181	+	TSC_hg19_v1_chr6_+_122720796 AK225593 AK225594 BC112323 M65217 AK294624 BC005329 BC064622 BC121050 BC121051 BC128420 AK316377 AB463722 CU675115 EU446897	302	+	CU688532 CU689596 AL137261 TSC_hg19_v1_chr6_-_122792947 AF164794 AB033079 BC014412 BC028607 BC033029 NM_020755 AK075339 AY358429 AK128781 AF087902	72439	-	NM_000165|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK312324|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK297764|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK223289|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK294670|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK309377|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK295460|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK297761|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK309490|GJA1|2697|gap junction protein, alpha 1, 43kDa##M65188|GJA1|2697|gap junction protein, alpha 1, 43kDa##X52947|GJA1|2697|gap junction protein, alpha 1, 43kDa##BC026329|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK131446|C6orf170|221322|chromosome 6 open reading frame 170##AK091554|C6orf170|221322|chromosome 6 open reading frame 170##NM_152730|C6orf170|221322|chromosome 6 open reading frame 170##BC065827|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##AK025599|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##AK307383|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##NM_005907|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##NM_001135564|HSF2|3298|heat shock transcription factor 2##NM_001243094|HSF2|3298|heat shock transcription factor 2##NM_004506|HSF2|3298|heat shock transcription factor 2##AK225593|HSF2|3298|heat shock transcription factor 2##AK225594|HSF2|3298|heat shock transcription factor 2##BC112323|HSF2|3298|heat shock transcription factor 2##M65217|HSF2|3298|heat shock transcription factor 2##AK294624|HSF2|3298|heat shock transcription factor 2##BC005329|HSF2|3298|heat shock transcription factor 2##BC064622|HSF2|3298|heat shock transcription factor 2##BC121050|HSF2|3298|heat shock transcription factor 2##BC121051|HSF2|3298|heat shock transcription factor 2##BC128420|HSF2|3298|heat shock transcription factor 2##AK316377|HSF2|3298|heat shock transcription factor 2##EU446897|HSF2|3298|heat shock transcription factor 2##AL137261|SERINC1|57515|serine incorporator 1##AF164794|SERINC1|57515|serine incorporator 1##AB033079|SERINC1|57515|serine incorporator 1##BC014412|SERINC1|57515|serine incorporator 1##BC028607|SERINC1|57515|serine incorporator 1##BC033029|SERINC1|57515|serine incorporator 1##NM_020755|SERINC1|57515|serine incorporator 1##AK075339|SERINC1|57515|serine incorporator 1##AY358429|SERINC1|57515|serine incorporator 1##AF087902|SERINC1|57515|serine incorporator 1	0.029965	
chr1	118472224	118472358	reg1001786.p1	4.285	+	AK000149 BC013324 TSC_hg19_v1_chr1_-_118472244 NM_001135589 NM_017686	-38	-	TSC_hg19_v1_chr1_-_118472186 BC013132	-109	-	TSC_hg19_v1_chr1_+_118148669 AK000209 BC036516 BC131726	-323612	+	BC058836 TSC_hg19_v1_chr1_+_118472357	62	+	TSC_hg19_v1_chr1_+_118472364 NM_006784 AK292438 AF083217 BC128385 BC128454 BC148244	87	+	AB527095 AK091816 AX747199 AY555274 BX648110 NM_206996	255522	-	AK000149|GDAP2|54834|ganglioside induced differentiation associated protein 2##BC013324|GDAP2|54834|ganglioside induced differentiation associated protein 2##NM_001135589|GDAP2|54834|ganglioside induced differentiation associated protein 2##NM_017686|GDAP2|54834|ganglioside induced differentiation associated protein 2##BC013132|GDAP2|54834|ganglioside induced differentiation associated protein 2##AK000209|FAM46C|54855|family with sequence similarity 46, member C##BC036516|FAM46C|54855|family with sequence similarity 46, member C##BC131726|FAM46C|54855|family with sequence similarity 46, member C##BC058836|WDR3|10885|WD repeat domain 3##NM_006784|WDR3|10885|WD repeat domain 3##AK292438|WDR3|10885|WD repeat domain 3##AF083217|WDR3|10885|WD repeat domain 3##AK091816|SPAG17|200162|sperm associated antigen 17##AY555274|SPAG17|200162|sperm associated antigen 17##BX648110|SPAG17|200162|sperm associated antigen 17##NM_206996|SPAG17|200162|sperm associated antigen 17	0.395089	denovo_WM_21:-20:0.274
chr16	14580874	14580960	reg1001068.p1	4.283	+	BC047761 TSC_hg19_v1_chr16_+_14294209	-286719	+	TSC_hg19_v1_chr16_+_14280544 AK093577 AX748211	-300399	+	TSC_hg19_v1_chr16_+_14165175 AK126948 AK294765 AY374297 NM_014048	-415831	+	CU690630 AJ005698 BC044763 BC050029 TSC_hg19_v1_chr16_-_14724066 AK303348	143111	-	AK299653 TSC_hg19_v1_chr16_-_14724118 AK301648 AK293189 AK315020 NM_001134477 NM_001242992 NM_002582	143216	-	NM_016561 TSC_hg19_v1_chr16_+_14726776 AF173003	145822	+	BC047761|MKL2|57496|MKL/myocardin-like 2##AK093577|MKL2|57496|MKL/myocardin-like 2##AK126948|MKL2|57496|MKL/myocardin-like 2##AK294765|MKL2|57496|MKL/myocardin-like 2##AY374297|MKL2|57496|MKL/myocardin-like 2##NM_014048|MKL2|57496|MKL/myocardin-like 2##AJ005698|PARN|5073|poly(A)-specific ribonuclease##BC044763|PARN|5073|poly(A)-specific ribonuclease##BC050029|PARN|5073|poly(A)-specific ribonuclease##AK303348|PARN|5073|poly(A)-specific ribonuclease##AK299653|PARN|5073|poly(A)-specific ribonuclease##AK301648|PARN|5073|poly(A)-specific ribonuclease##AK293189|PARN|5073|poly(A)-specific ribonuclease##AK315020|PARN|5073|poly(A)-specific ribonuclease##NM_001134477|PARN|5073|poly(A)-specific ribonuclease##NM_001242992|PARN|5073|poly(A)-specific ribonuclease##NM_002582|PARN|5073|poly(A)-specific ribonuclease##NM_016561|BFAR|51283|bifunctional apoptosis regulator##AF173003|BFAR|51283|bifunctional apoptosis regulator	0.0	
chr16	85932633	85932736	reg1001357.p1	4.283	+	TSC_hg19_v1_chr16_+_85833325 BC021236 M21575	-99349	+	BC062437 X54802 TSC_hg19_v1_chr16_+_85833300 AK311847 BC039013 BC008704	-99379	+	NM_001861 TSC_hg19_v1_chr16_+_85833279 BC047869 U90915	-99451	+	TSC_hg19_v1_chr16_+_85932767 NM_002163 BC126247 M91196	102	+	TSC_hg19_v1_chr16_-_86542463 AK091834	609780	-	TSC_hg19_v1_chr16_+_86544132 AK314167 NM_001451 BC089442 U13219	611472	+	BC021236|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##M21575|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC062437|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##X54802|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##AK311847|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC039013|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC008704|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##NM_001861|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC047869|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##U90915|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##NM_002163|IRF8|3394|interferon regulatory factor 8##BC126247|IRF8|3394|interferon regulatory factor 8##M91196|IRF8|3394|interferon regulatory factor 8##AK091834|LOC400550|400550|uncharacterized LOC400550##AK314167|FOXF1|2294|forkhead box F1##NM_001451|FOXF1|2294|forkhead box F1##BC089442|FOXF1|2294|forkhead box F1##U13219|FOXF1|2294|forkhead box F1	0.012238	
chr3	99442513	99442583	reg1001327.p1	4.279	+	AK311449 NM_001850 NM_020351 AF170702 BC013581	-85098	+	TSC_hg19_v1_chr3_-_98620527 AK056350 AB073146 NM_080927	-822056	-	TSC_hg19_v1_chr3_+_98451544 AK315111 AF119391 BC023312 NM_006100	-990961	+	TSC_hg19_v1_chr3_+_99536705 AK312483 NM_032359 BC006475 BC006512 AK291392 AK124387 BC071745 CU675421	94197	+	TSC_hg19_v1_chr3_-_99595018 EU531865 EU531866 BC027860 AK225855 AK096195 NM_014890	152443	-	BC017987 NM_001042459 NM_182909 AF329092 AX776292	390804	-	AK311449|COL8A1|1295|collagen, type VIII, alpha 1##NM_001850|COL8A1|1295|collagen, type VIII, alpha 1##NM_020351|COL8A1|1295|collagen, type VIII, alpha 1##AF170702|COL8A1|1295|collagen, type VIII, alpha 1##BC013581|COL8A1|1295|collagen, type VIII, alpha 1##AK056350|DCBLD2|131566|discoidin, CUB and LCCL domain containing 2##AB073146|DCBLD2|131566|discoidin, CUB and LCCL domain containing 2##NM_080927|DCBLD2|131566|discoidin, CUB and LCCL domain containing 2##AK315111|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AF119391|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC023312|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##NM_006100|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK312483|C3orf26|84319|chromosome 3 open reading frame 26##NM_032359|C3orf26|84319|chromosome 3 open reading frame 26##BC006475|C3orf26|84319|chromosome 3 open reading frame 26##BC006512|C3orf26|84319|chromosome 3 open reading frame 26##AK291392|C3orf26|84319|chromosome 3 open reading frame 26##AK124387|C3orf26|84319|chromosome 3 open reading frame 26##EU531865|FILIP1L|11259|filamin A interacting protein 1-like##EU531866|FILIP1L|11259|filamin A interacting protein 1-like##BC027860|FILIP1L|11259|filamin A interacting protein 1-like##AK225855|FILIP1L|11259|filamin A interacting protein 1-like##AK096195|FILIP1L|11259|filamin A interacting protein 1-like##NM_014890|FILIP1L|11259|filamin A interacting protein 1-like##BC017987|FILIP1L|11259|filamin A interacting protein 1-like##NM_001042459|FILIP1L|11259|filamin A interacting protein 1-like##NM_182909|FILIP1L|11259|filamin A interacting protein 1-like##AF329092|FILIP1L|11259|filamin A interacting protein 1-like##AX776292|FILIP1L|11259|filamin A interacting protein 1-like	0.0	
chr21	37854870	37854994	reg1001267.p1	4.273	+	AF314090 AY355348 NM_001146079 NM_144492	-2545	-	BC012126 NM_012130 AY355349	-16201	-	TSC_hg19_v1_chr21_+_37757689 NM_005441 AK313152 BC001143	-97242	+	AJ566765 NM_001146078	59965	-	AJ566766 NM_001146077	93934	-	BC052313 BC067104 TSC_hg19_v1_chr21_+_38071448	216508	+	AF314090|CLDN14|23562|claudin 14##AY355348|CLDN14|23562|claudin 14##NM_001146079|CLDN14|23562|claudin 14##NM_144492|CLDN14|23562|claudin 14##BC012126|CLDN14|23562|claudin 14##NM_012130|CLDN14|23562|claudin 14##AY355349|CLDN14|23562|claudin 14##NM_005441|CHAF1B|8208|chromatin assembly factor 1, subunit B (p60)##AK313152|CHAF1B|8208|chromatin assembly factor 1, subunit B (p60)##BC001143|CHAF1B|8208|chromatin assembly factor 1, subunit B (p60)##AJ566765|CLDN14|23562|claudin 14##NM_001146078|CLDN14|23562|claudin 14##AJ566766|CLDN14|23562|claudin 14##NM_001146077|CLDN14|23562|claudin 14	0.0	
chr22	44481805	44481928	reg1001315.p1	4.273	+	BC039811 NM_001243385	-16870	+	AK308443 NM_001243386	-59683	+	TSC_hg19_v1_chr22_+_44420185 NM_013327 BC017461 AK309987 AK313957 BC046103 AB048276 AF151814 AF237769 AL159142	-61667	+	NM_001137605 AK309348 AK293360	86990	+	NM_022141 AK225929 AK307294 BC034406 AF237772	94946	+	AK307299 TSC_hg19_v1_chr22_+_44577227 AK311264	95358	+	BC039811|PARVB|29780|parvin, beta##NM_001243385|PARVB|29780|parvin, beta##AK308443|PARVB|29780|parvin, beta##NM_001243386|PARVB|29780|parvin, beta##NM_013327|PARVB|29780|parvin, beta##BC017461|PARVB|29780|parvin, beta##AK309987|PARVB|29780|parvin, beta##AK313957|PARVB|29780|parvin, beta##BC046103|PARVB|29780|parvin, beta##AB048276|PARVB|29780|parvin, beta##AF151814|PARVB|29780|parvin, beta##AF237769|PARVB|29780|parvin, beta##AL159142|PARVB|29780|parvin, beta##NM_001137605|PARVG|64098|parvin, gamma##AK309348|PARVG|64098|parvin, gamma##AK293360|PARVG|64098|parvin, gamma##NM_022141|PARVG|64098|parvin, gamma##AK225929|PARVG|64098|parvin, gamma##AK307294|PARVG|64098|parvin, gamma##BC034406|PARVG|64098|parvin, gamma##AF237772|PARVG|64098|parvin, gamma##AK307299|PARVG|64098|parvin, gamma	0.0	
chr8	144650526	144650596	reg1001577.p1	4.271	+	NM_024736 AY008304 BC008904 TSC_hg19_v1_chr8_+_144640515 AK303615 AK022212 AK123985 AK096216 BC069000	-10055	+	AK291817 NM_001166237	-15005	+	TSC_hg19_v1_chr8_-_144623640 NM_015117	-26929	-	TSC_hg19_v1_chr8_-_144650884 AF289596	342	-	TSC_hg19_v1_chr8_-_144651064 AK292180	494	-	TSC_hg19_v1_chr8_-_144654943 NM_001100878	4372	-	NM_024736|GSDMD|79792|gasdermin D##AY008304|GSDMD|79792|gasdermin D##BC008904|GSDMD|79792|gasdermin D##AK303615|GSDMD|79792|gasdermin D##AK022212|GSDMD|79792|gasdermin D##AK123985|GSDMD|79792|gasdermin D##AK096216|GSDMD|79792|gasdermin D##BC069000|GSDMD|79792|gasdermin D##AK291817|GSDMD|79792|gasdermin D##NM_001166237|GSDMD|79792|gasdermin D##NM_015117|ZC3H3|23144|zinc finger CCCH-type containing 3##AF289596|C8orf73|642475|chromosome 8 open reading frame 73##AK292180|C8orf73|642475|chromosome 8 open reading frame 73##NM_001100878|C8orf73|642475|chromosome 8 open reading frame 73	0.0	
chr2	74881246	74881367	reg1001936.p1	4.270	+	BC025997 NM_138804	-6143	-	AK222883 TSC_hg19_v1_chr2_+_74781875 BC111055 U70987 BC114440 AK127127 AK127656 AK314678 BC114497 AK296154 AB587402 AF180527 AK300097	-99443	+	NM_001381	-99795	+	TSC_hg19_v1_chr2_+_74881437 AK095587 AK312728 AL136552 NM_004263 AK075384 AK304358 AK291023 BC018361 BC038411 AK308166 AB021292 AB022317 AB463247 AM393735 CU676238 CU691566 DQ895677	122	+	AF086198 NM_000189	178475	+	TSC_hg19_v1_chr2_+_75061273 AF148513 BC021116 BC064369 AK290357	179954	+	BC025997|C2orf65|130951|chromosome 2 open reading frame 65##NM_138804|C2orf65|130951|chromosome 2 open reading frame 65##AK222883|DOK1|1796|docking protein 1, 62kDa (downstream of tyrosine kinase 1)##BC111055|DOK1|1796|docking protein 1, 62kDa (downstream of tyrosine kinase 1)##U70987|DOK1|1796|docking protein 1, 62kDa (downstream of tyrosine kinase 1)##BC114440|DOK1|1796|docking protein 1, 62kDa (downstream of tyrosine kinase 1)##AK127127|DOK1|1796|docking protein 1, 62kDa (downstream of tyrosine kinase 1)##AK127656|DOK1|1796|docking protein 1, 62kDa (downstream of tyrosine kinase 1)##AK314678|DOK1|1796|docking protein 1, 62kDa (downstream of tyrosine kinase 1)##BC114497|DOK1|1796|docking protein 1, 62kDa (downstream of tyrosine kinase 1)##AK296154|DOK1|1796|docking protein 1, 62kDa (downstream of tyrosine kinase 1)##AF180527|DOK1|1796|docking protein 1, 62kDa (downstream of tyrosine kinase 1)##AK300097|DOK1|1796|docking protein 1, 62kDa (downstream of tyrosine kinase 1)##NM_001381|DOK1|1796|docking protein 1, 62kDa (downstream of tyrosine kinase 1)##AK312728|SEMA4F|10505|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F##AL136552|SEMA4F|10505|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F##NM_004263|SEMA4F|10505|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F##AK075384|SEMA4F|10505|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F##AK304358|SEMA4F|10505|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F##AK291023|SEMA4F|10505|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F##BC018361|SEMA4F|10505|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F##BC038411|SEMA4F|10505|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F##AK308166|SEMA4F|10505|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F##AB021292|SEMA4F|10505|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F##AB022317|SEMA4F|10505|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F##AM393735|SEMA4F|10505|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F##DQ895677|SEMA4F|10505|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F##AF086198|HK2|3099|hexokinase 2##NM_000189|HK2|3099|hexokinase 2##AF148513|HK2|3099|hexokinase 2##BC021116|HK2|3099|hexokinase 2##BC064369|HK2|3099|hexokinase 2##AK290357|HK2|3099|hexokinase 2	0.9272	denovo_WM_21:4:0.875
chr6	10963433	10963546	reg1001396.p1	4.270	+	AK128130 NM_001040274	-76426	+	AF091149 BC069603 AF079550 BC117316 BC117318 NM_004752	-81410	-	AK314408 AB593146 AK097831 AK310329 TSC_hg19_v1_chr6_-_10838761 BC033002 NM_001242385 NM_001242957 NM_005906	-124740	-	TSC_hg19_v1_chr6_-_11044539 AK000341 BC060809 BC050278 NM_017770	81091	-	TSC_hg19_v1_chr6_+_11094066 AK058186	130568	+	BC032356 NM_001135575 TSC_hg19_v1_chr6_+_11094342	130814	+	AK128130|SYCP2L|221711|synaptonemal complex protein 2-like##NM_001040274|SYCP2L|221711|synaptonemal complex protein 2-like##AF091149|GCM2|9247|glial cells missing homolog 2 (Drosophila)##BC069603|GCM2|9247|glial cells missing homolog 2 (Drosophila)##AF079550|GCM2|9247|glial cells missing homolog 2 (Drosophila)##BC117316|GCM2|9247|glial cells missing homolog 2 (Drosophila)##BC117318|GCM2|9247|glial cells missing homolog 2 (Drosophila)##NM_004752|GCM2|9247|glial cells missing homolog 2 (Drosophila)##AK314408|MAK|4117|male germ cell-associated kinase##AB593146|MAK|4117|male germ cell-associated kinase##AK097831|MAK|4117|male germ cell-associated kinase##AK310329|MAK|4117|male germ cell-associated kinase##BC033002|MAK|4117|male germ cell-associated kinase##NM_001242385|MAK|4117|male germ cell-associated kinase##NM_001242957|MAK|4117|male germ cell-associated kinase##NM_005906|MAK|4117|male germ cell-associated kinase##AK000341|ELOVL2|54898|ELOVL fatty acid elongase 2##BC060809|ELOVL2|54898|ELOVL fatty acid elongase 2##BC050278|ELOVL2|54898|ELOVL fatty acid elongase 2##NM_017770|ELOVL2|54898|ELOVL fatty acid elongase 2##AK058186|C6orf228|221710|chromosome 6 open reading frame 228##BC032356|C6orf228|221710|chromosome 6 open reading frame 228##NM_001135575|C6orf228|221710|chromosome 6 open reading frame 228	0.0	
chr16	10479823	10479922	reg1000960.p2	4.269	+	NM_000833 U90277 TSC_hg19_v1_chr16_-_10276744	-203195	-	AK308862 TSC_hg19_v1_chr16_-_10276243 AB209695 NM_001134407	-203684	-	BC143273 U09002 NM_001134408	-204039	-	AK093414 AX748112 TSC_hg19_v1_chr16_+_10479917 AK296565 AK299040 BC033891 BC041882	45	+	NM_024997 BC137079 BC144468	42868	+	TSC_hg19_v1_chr16_-_10674469 AK123602 BC009687 AK313134 NM_001424	194618	-	NM_000833|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U90277|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AK308862|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AB209695|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134407|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##BC143273|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U09002|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134408|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AK093414|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK296565|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK299040|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC033891|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##NM_024997|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC137079|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC144468|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK123602|EMP2|2013|epithelial membrane protein 2##BC009687|EMP2|2013|epithelial membrane protein 2##AK313134|EMP2|2013|epithelial membrane protein 2##NM_001424|EMP2|2013|epithelial membrane protein 2	0.576098	denovo_WM_21:-23:0.576
chr19	39390441	39390553	reg1001255.p1	4.266	+	TSC_hg19_v1_chr19_-_39390229 AK314492 AB009274 AF160214 AY030277 AF095714 AK025876 AK225824 AK054642 AK094810 BC003012 BC003547 AF083107 NM_012237 NM_001193286 NM_030593	-163	-	TSC_hg19_v1_chr19_+_39390332 NM_001243116 AB362577	-196	+	TSC_hg19_v1_chr19_-_39368901 AK127808 AK126119 AK298327 NM_001195833 NM_198445	-21587	-	TSC_hg19_v1_chr19_+_39390569 NM_002503	71	+	TSC_hg19_v1_chr19_+_39390609 AB209784	96	+	TSC_hg19_v1_chr19_+_39390657 AK057862 AK290569 BC015528 AB463937 DQ890633 DQ893804 CU677339 BT006743	221	+	AK314492|SIRT2|22933|sirtuin 2##AB009274|SIRT2|22933|sirtuin 2##AF160214|SIRT2|22933|sirtuin 2##AY030277|SIRT2|22933|sirtuin 2##AF095714|SIRT2|22933|sirtuin 2##AK025876|SIRT2|22933|sirtuin 2##AK225824|SIRT2|22933|sirtuin 2##AK054642|SIRT2|22933|sirtuin 2##AK094810|SIRT2|22933|sirtuin 2##BC003012|SIRT2|22933|sirtuin 2##BC003547|SIRT2|22933|sirtuin 2##AF083107|SIRT2|22933|sirtuin 2##NM_012237|SIRT2|22933|sirtuin 2##NM_001193286|SIRT2|22933|sirtuin 2##NM_030593|SIRT2|22933|sirtuin 2##NM_001243116|NFKBIB|4793|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta##AK127808|RINL|126432|Ras and Rab interactor-like##AK126119|RINL|126432|Ras and Rab interactor-like##AK298327|RINL|126432|Ras and Rab interactor-like##NM_001195833|RINL|126432|Ras and Rab interactor-like##NM_198445|RINL|126432|Ras and Rab interactor-like##NM_002503|NFKBIB|4793|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta##AB209784|NFKBIB|4793|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta##AK057862|NFKBIB|4793|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta##AK290569|NFKBIB|4793|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta##BC015528|NFKBIB|4793|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta##DQ890633|NFKBIB|4793|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta##DQ893804|NFKBIB|4793|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta##BT006743|NFKBIB|4793|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta	0.980873	denovo_WM_21:8:0.981
chr6	62996145	62996275	reg1001511.p1	4.264	+	CU689822 TSC_hg19_v1_chr6_-_62996128 AY077838 AK292043 AK095983 NM_152688 BC034043	-209	-	BC017330 BC030061 TSC_hg19_v1_chr6_-_58287674 BC011838 BC144584 BC144585 BC065547	-4708531	-	TSC_hg19_v1_chr6_+_57182427 BC017833 NM_000947 X74331 AK223287 AK291915 BC064931	-5813795	+	DQ682605 DQ682606 BC130366 BC130368 AF242388 NM_001143940 NM_016571	1033654	-	TSC_hg19_v1_chr6_+_64231650 CR749458	1235445	+	TSC_hg19_v1_chr6_+_64281913 BC045571 NM_003463	1285706	+	AY077838|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK292043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK095983|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##NM_152688|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##BC034043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##BC017330|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC030061|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC011838|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144584|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144585|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC065547|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC017833|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##NM_000947|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##X74331|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AK223287|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AK291915|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##BC064931|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##DQ682605|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##DQ682606|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130366|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130368|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##AF242388|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_001143940|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_016571|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##CR749458|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1##BC045571|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1##NM_003463|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1	0.184715	
chr20	62289584	62289718	reg1001424.p1	4.262	+	AF217795 NM_016434 NM_032957	-489	+	DQ893121 DQ896397 BC047671 BC021084 BC032527 AF069709 BC056873 TSC_hg19_v1_chr20_-_62284781 AK074860 NM_015894 AK310010 BC009381 BC025234	-4891	-	TSC_hg19_v1_chr20_-_62258426 AK298927	-31214	-	TSC_hg19_v1_chr20_+_62289667 AK302508 AK304798 AK299332 BC000673	30	+	TSC_hg19_v1_chr20_+_62321100 AL080127	31497	+	TSC_hg19_v1_chr20_+_62328005 NM_003823 AF104419 AY358279 BC017065	38360	+	AF217795|RTEL1|51750|regulator of telomere elongation helicase 1##NM_016434|RTEL1|51750|regulator of telomere elongation helicase 1##NM_032957|RTEL1|51750|regulator of telomere elongation helicase 1##DQ893121|STMN3|50861|stathmin-like 3##DQ896397|STMN3|50861|stathmin-like 3##BC047671|STMN3|50861|stathmin-like 3##BC032527|STMN3|50861|stathmin-like 3##AF069709|STMN3|50861|stathmin-like 3##BC056873|STMN3|50861|stathmin-like 3##AK074860|STMN3|50861|stathmin-like 3##NM_015894|STMN3|50861|stathmin-like 3##AK310010|STMN3|50861|stathmin-like 3##BC009381|STMN3|50861|stathmin-like 3##BC025234|STMN3|50861|stathmin-like 3##AK298927|GMEB2|26205|glucocorticoid modulatory element binding protein 2##AK302508|RTEL1|51750|regulator of telomere elongation helicase 1##AK304798|RTEL1|51750|regulator of telomere elongation helicase 1##AK299332|RTEL1|51750|regulator of telomere elongation helicase 1##AL080127|RTEL1|51750|regulator of telomere elongation helicase 1##NM_003823|TNFRSF6B|8771|tumor necrosis factor receptor superfamily, member 6b, decoy##AF104419|TNFRSF6B|8771|tumor necrosis factor receptor superfamily, member 6b, decoy##AY358279|TNFRSF6B|8771|tumor necrosis factor receptor superfamily, member 6b, decoy##BC017065|TNFRSF6B|8771|tumor necrosis factor receptor superfamily, member 6b, decoy	0.0	
chr2	71350107	71350204	reg1001692.p2	4.261	+	TSC_hg19_v1_chr2_+_71295777 BC001029 BC005371 AK001812 AK097223 AK222645 BC036843 AJ242910 AB463914 CU674506 CU675147 DQ892674 DQ895916 CR457271	-54406	+	TSC_hg19_v1_chr2_+_71295436 AK297224	-54713	+	NM_017567 TSC_hg19_v1_chr2_+_71295427	-54738	+	DQ891375 DQ894553 TSC_hg19_v1_chr2_-_71357360 BC020825 AF364547 NM_032601	7224	-	TSC_hg19_v1_chr2_+_71357454 AK056862 NM_005791 BC126389	7334	+	TSC_hg19_v1_chr2_+_71357768 AK310931 BC041084 X98494	7630	+	BC001029|NAGK|55577|N-acetylglucosamine kinase##BC005371|NAGK|55577|N-acetylglucosamine kinase##AK001812|NAGK|55577|N-acetylglucosamine kinase##AK097223|NAGK|55577|N-acetylglucosamine kinase##AK222645|NAGK|55577|N-acetylglucosamine kinase##BC036843|NAGK|55577|N-acetylglucosamine kinase##AJ242910|NAGK|55577|N-acetylglucosamine kinase##DQ892674|NAGK|55577|N-acetylglucosamine kinase##DQ895916|NAGK|55577|N-acetylglucosamine kinase##CR457271|NAGK|55577|N-acetylglucosamine kinase##AK297224|NAGK|55577|N-acetylglucosamine kinase##NM_017567|NAGK|55577|N-acetylglucosamine kinase##DQ891375|MCEE|84693|methylmalonyl CoA epimerase##DQ894553|MCEE|84693|methylmalonyl CoA epimerase##BC020825|MCEE|84693|methylmalonyl CoA epimerase##AF364547|MCEE|84693|methylmalonyl CoA epimerase##NM_032601|MCEE|84693|methylmalonyl CoA epimerase##AK056862|MPHOSPH10|10199|M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)##NM_005791|MPHOSPH10|10199|M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)##BC126389|MPHOSPH10|10199|M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)##AK310931|MPHOSPH10|10199|M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)##BC041084|MPHOSPH10|10199|M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)##X98494|MPHOSPH10|10199|M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	0.0	
chr19	23870009	23870134	reg1001347.p2	4.260	+	AY044432 AK307845 BC032394 AK093669 AX748253 NM_138330	-94	-	TSC_hg19_v1_chr19_-_23598867 BC041431	-271202	-	TSC_hg19_v1_chr19_-_23598839 AK022793	-271227	-	BC136346 AK056088 BC062216 TSC_hg19_v1_chr19_-_23941693 AK122869 NM_138286	71564	-	TSC_hg19_v1_chr19_+_23945812 BC071971	75742	+	TSC_hg19_v1_chr19_+_24097711 NM_001244038 AX721133 BC046415 AB593087	227623	+	AY044432|ZNF675|171392|zinc finger protein 675##AK307845|ZNF675|171392|zinc finger protein 675##AK093669|ZNF675|171392|zinc finger protein 675##NM_138330|ZNF675|171392|zinc finger protein 675##BC136346|ZNF681|148213|zinc finger protein 681##AK056088|ZNF681|148213|zinc finger protein 681##BC062216|ZNF681|148213|zinc finger protein 681##AK122869|ZNF681|148213|zinc finger protein 681##NM_138286|ZNF681|148213|zinc finger protein 681##BC071971|RPSAP58|388524|ribosomal protein SA pseudogene 58##NM_001244038|ZNF726|730087|zinc finger protein 726##BC046415|ZNF726|730087|zinc finger protein 726	0.02137	
chr12	129156312	129156427	reg1001282.p2	4.259	+	NM_001136103	-404422	+	NM_052907	-3345208	+	TSC_hg19_v1_chr12_+_125549988 AK308779 AK024036 AK022451 AK304176 BC051862 AB054121 AY091468	-3606301	+	BC028394 AK095717 TSC_hg19_v1_chr12_-_129308529 AY050629 BC146803 AY038999 NM_145648	152074	-	BC043528 TSC_hg19_v1_chr12_+_129337985	181615	+	TSC_hg19_v1_chr12_+_129338057 AK056540 NM_144669 CU692172	181718	+	NM_001136103|TMEM132C|92293|transmembrane protein 132C##NM_052907|TMEM132B|114795|transmembrane protein 132B##AK308779|AACS|65985|acetoacetyl-CoA synthetase##AK024036|AACS|65985|acetoacetyl-CoA synthetase##AK022451|AACS|65985|acetoacetyl-CoA synthetase##AK304176|AACS|65985|acetoacetyl-CoA synthetase##BC051862|AACS|65985|acetoacetyl-CoA synthetase##AB054121|AACS|65985|acetoacetyl-CoA synthetase##AY091468|AACS|65985|acetoacetyl-CoA synthetase##BC028394|SLC15A4|121260|solute carrier family 15, member 4##AK095717|SLC15A4|121260|solute carrier family 15, member 4##AY050629|SLC15A4|121260|solute carrier family 15, member 4##BC146803|SLC15A4|121260|solute carrier family 15, member 4##AY038999|SLC15A4|121260|solute carrier family 15, member 4##NM_145648|SLC15A4|121260|solute carrier family 15, member 4##BC043528|GLT1D1|144423|glycosyltransferase 1 domain containing 1##AK056540|GLT1D1|144423|glycosyltransferase 1 domain containing 1##NM_144669|GLT1D1|144423|glycosyltransferase 1 domain containing 1	0.065101	
chr5	137549145	137549215	reg1000279.p2	4.259	+	AK304635 TSC_hg19_v1_chr5_-_137549034 NM_004661	-149	-	AF191341 BT009810 AB590268 DQ891686 DQ894870 TSC_hg19_v1_chr5_-_137549013 BC017713 AF053977 BC005258 BC010944 AK291610 AB011472 AK223250	-177	-	TSC_hg19_v1_chr5_+_137514857 AK296879 AK025790 AF153329 BC012999	-34365	+	AF051767 DQ890850 DQ894004 BC037951 AY358997 AK314022 AK297693 NM_001496 AY359037 TSC_hg19_v1_chr5_-_137610343	61048	-	M34065 BC019089 TSC_hg19_v1_chr5_-_137667469 NM_001790 NM_022809	118313	-	NM_001135647 TSC_hg19_v1_chr5_+_137673265 BC052993	124074	+	AK304635|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##NM_004661|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AF191341|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##BT009810|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##DQ891686|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##DQ894870|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##BC017713|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AF053977|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##BC005258|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##BC010944|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AK291610|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AB011472|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AK223250|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AK296879|KIF20A|10112|kinesin family member 20A##AK025790|KIF20A|10112|kinesin family member 20A##AF153329|KIF20A|10112|kinesin family member 20A##BC012999|KIF20A|10112|kinesin family member 20A##AF051767|GFRA3|2676|GDNF family receptor alpha 3##DQ890850|GFRA3|2676|GDNF family receptor alpha 3##DQ894004|GFRA3|2676|GDNF family receptor alpha 3##BC037951|GFRA3|2676|GDNF family receptor alpha 3##AY358997|GFRA3|2676|GDNF family receptor alpha 3##AK314022|GFRA3|2676|GDNF family receptor alpha 3##AK297693|GFRA3|2676|GDNF family receptor alpha 3##NM_001496|GFRA3|2676|GDNF family receptor alpha 3##AY359037|GFRA3|2676|GDNF family receptor alpha 3##M34065|CDC25C|995|cell division cycle 25 homolog C (S. pombe)##BC019089|CDC25C|995|cell division cycle 25 homolog C (S. pombe)##NM_001790|CDC25C|995|cell division cycle 25 homolog C (S. pombe)##NM_022809|CDC25C|995|cell division cycle 25 homolog C (S. pombe)##NM_001135647|FAM53C|51307|family with sequence similarity 53, member C##BC052993|FAM53C|51307|family with sequence similarity 53, member C	1.488774	
chr7	72349673	72349804	reg1001292.p1	4.257	+	TSC_hg19_v1_chr7_+_72300065 BC010183	-49639	+	AK303225 AK309556 AK301471 BC068520 AK310913 NM_001145440 NM_001145441	-50956	-	NM_031468	-472379	-	TSC_hg19_v1_chr7_+_72349925 AB014518 NM_172020	197	+	TSC_hg19_v1_chr7_+_72395623 AK123814 AB289621	45887	+	AK292548 TSC_hg19_v1_chr7_+_72396883 AB528161 CU679111	47136	+	BC010183|SBDSP1|155370|Shwachman-Bodian-Diamond syndrome pseudogene 1##AK303225|TYW1B|441250|tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)##AK309556|TYW1B|441250|tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)##AK301471|TYW1B|441250|tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)##BC068520|TYW1B|441250|tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)##AK310913|TYW1B|441250|tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)##NM_001145440|TYW1B|441250|tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)##NM_001145441|TYW1B|441250|tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)##NM_031468|CALN1|83698|calneuron 1##AB014518|POM121|9883|POM121 membrane glycoprotein##NM_172020|POM121|9883|POM121 membrane glycoprotein##AK123814|POM121|9883|POM121 membrane glycoprotein##AB289621|POM121|9883|POM121 membrane glycoprotein##AK292548|POM121|9883|POM121 membrane glycoprotein	0.0	
chr1	47779841	47779979	reg1001111.p1	4.253	+	TSC_hg19_v1_chr1_-_47779820 DQ358744 AK307519 BC053615 CR749851 M74558 NM_001048166 NM_003035	-125	-	M61108 NM_003189	-84468	-	TSC_hg19_v1_chr1_-_47655728 NM_005764	-124164	-	TSC_hg19_v1_chr1_+_47799474 NM_001136140 NM_016308	19555	+	TSC_hg19_v1_chr1_+_47799615 BC017806 AF087865 AF112216 AF110643 AK223014 AK294294 AK298502 AF070416 AK025258 AK293238 AK312693 BC014961 AB528698 DQ892213 DQ895408 DQ895409	19642	+	TSC_hg19_v1_chr1_+_47799646 AF259961	19731	+	AK307519|STIL|6491|SCL/TAL1 interrupting locus##BC053615|STIL|6491|SCL/TAL1 interrupting locus##CR749851|STIL|6491|SCL/TAL1 interrupting locus##M74558|STIL|6491|SCL/TAL1 interrupting locus##NM_001048166|STIL|6491|SCL/TAL1 interrupting locus##NM_003035|STIL|6491|SCL/TAL1 interrupting locus##M61108|TAL1|6886|T-cell acute lymphocytic leukemia 1##NM_003189|TAL1|6886|T-cell acute lymphocytic leukemia 1##NM_005764|PDZK1IP1|10158|PDZK1 interacting protein 1##NM_001136140|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##NM_016308|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##BC017806|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AF087865|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AF112216|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AF110643|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AK223014|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AK294294|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AK298502|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AF070416|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AK025258|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AK293238|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AK312693|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##BC014961|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##DQ892213|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##DQ895408|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##DQ895409|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AF259961|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic	0.985631	denovo_WM_21:47:0.899
chr5	149792472	149792589	reg1001249.p2	4.252	+	TSC_hg19_v1_chr5_-_149792474 NM_001025158 NM_001025159 NM_004355	-80	-	TSC_hg19_v1_chr5_-_149792349 M28589	-184	-	TSC_hg19_v1_chr5_-_149792315 AB590276 BT019505 CU676294 DQ892005 DQ895194 AK292076 AK297889 AK300669 AK308929 M28588 X00497 BC018726 BC024272	-227	-	TSC_hg19_v1_chr5_-_149829249 BC020515	36714	-	TSC_hg19_v1_chr5_-_149829301 BC003401 BC001126 BC006784 BC110792 AK312179 BC091474 NM_001025070 NM_001025071 NM_005617	36761	-	TSC_hg19_v1_chr5_+_149865341 AB209107	72909	+	NM_001025158|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##NM_001025159|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##NM_004355|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##BT019505|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##DQ892005|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##DQ895194|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##AK292076|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##AK297889|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##AK300669|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##AK308929|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##M28588|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##X00497|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##BC018726|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##BC024272|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##BC020515|RPS14|6208|ribosomal protein S14##BC003401|RPS14|6208|ribosomal protein S14##BC001126|RPS14|6208|ribosomal protein S14##BC006784|RPS14|6208|ribosomal protein S14##BC110792|RPS14|6208|ribosomal protein S14##AK312179|RPS14|6208|ribosomal protein S14##BC091474|RPS14|6208|ribosomal protein S14##NM_001025070|RPS14|6208|ribosomal protein S14##NM_001025071|RPS14|6208|ribosomal protein S14##NM_005617|RPS14|6208|ribosomal protein S14##AB209107|NDST1|3340|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	0.738037	denovo_WM_21:-7:0.738
chr17	35388425	35388582	reg1001238.p1	4.250	+	AK057229 NM_012138 TSC_hg19_v1_chr17_+_35306253 AF083208 BC000591 AJ249940 AB385572 CU674286 DQ892097 DQ895290	-82204	+	BC020470 NM_005568	-93732	+	BC084573 TSC_hg19_v1_chr17_-_35293961	-94563	-	AY315619 AY315620 NM_198837 NM_198838	268188	-	TSC_hg19_v1_chr17_-_35716040 AB371587 AK309084 AY315621 AY315622 NM_198836	327549	-	AK096966 BC034672 NM_173625 CU689930	344477	+	AK057229|AATF|26574|apoptosis antagonizing transcription factor##NM_012138|AATF|26574|apoptosis antagonizing transcription factor##AF083208|AATF|26574|apoptosis antagonizing transcription factor##BC000591|AATF|26574|apoptosis antagonizing transcription factor##AJ249940|AATF|26574|apoptosis antagonizing transcription factor##DQ892097|AATF|26574|apoptosis antagonizing transcription factor##DQ895290|AATF|26574|apoptosis antagonizing transcription factor##BC020470|LHX1|3975|LIM homeobox 1##NM_005568|LHX1|3975|LIM homeobox 1##AY315619|ACACA|31|acetyl-CoA carboxylase alpha##AY315620|ACACA|31|acetyl-CoA carboxylase alpha##NM_198837|ACACA|31|acetyl-CoA carboxylase alpha##NM_198838|ACACA|31|acetyl-CoA carboxylase alpha##AB371587|ACACA|31|acetyl-CoA carboxylase alpha##AK309084|ACACA|31|acetyl-CoA carboxylase alpha##AY315621|ACACA|31|acetyl-CoA carboxylase alpha##AY315622|ACACA|31|acetyl-CoA carboxylase alpha##NM_198836|ACACA|31|acetyl-CoA carboxylase alpha##AK096966|C17orf78|284099|chromosome 17 open reading frame 78##BC034672|C17orf78|284099|chromosome 17 open reading frame 78##NM_173625|C17orf78|284099|chromosome 17 open reading frame 78	0.113013	
chr12	120315141	120315251	reg1001649.p1	4.246	+	TSC_hg19_v1_chr12_-_120315112 AY209000 AY257469 BC008127 AY681966 NM_001206999 NM_007174	-103	-	AK123136 TSC_hg19_v1_chr12_-_120241305	-73899	-	TSC_hg19_v1_chr12_+_120105769 AK312495 NM_006253 BC017671 AF022116 BC001007 BC001056 BC001823 BC018818 U83994 AK301165 Y12556 AB590811 AJ224515	-209344	+	TSC_hg19_v1_chr12_+_120427616 AK129960 NM_207311 U88834	112402	+	AF498960 BT020024 CR536486 CR541683 CU677517 DQ890586 DQ890603 DQ893750 AB528529 TSC_hg19_v1_chr12_-_120554547 X79781 AK304620	239305	-	TSC_hg19_v1_chr12_-_120554551 AK312538	239357	-	AY209000|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##AY257469|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##BC008127|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##AY681966|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##NM_001206999|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##NM_007174|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##AK123136|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##AK312495|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##NM_006253|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##BC017671|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##AF022116|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##BC001007|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##BC001056|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##BC001823|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##BC018818|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##U83994|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##AK301165|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##Y12556|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##AJ224515|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##AK129960|CCDC64|92558|coiled-coil domain containing 64##NM_207311|CCDC64|92558|coiled-coil domain containing 64##U88834|CCDC64|92558|coiled-coil domain containing 64##AF498960|RAB35|11021|RAB35, member RAS oncogene family##BT020024|RAB35|11021|RAB35, member RAS oncogene family##CR536486|RAB35|11021|RAB35, member RAS oncogene family##CR541683|RAB35|11021|RAB35, member RAS oncogene family##DQ890586|RAB35|11021|RAB35, member RAS oncogene family##DQ890603|RAB35|11021|RAB35, member RAS oncogene family##DQ893750|RAB35|11021|RAB35, member RAS oncogene family##X79781|RAB35|11021|RAB35, member RAS oncogene family##AK304620|RAB35|11021|RAB35, member RAS oncogene family##AK312538|RAB35|11021|RAB35, member RAS oncogene family	1.683068	denovo_WM_21:-37:0.899	denovo_WM_21:55:0.698
chr12	82150077	82150223	reg1001846.p1	4.245	+	AK294505 AK297372 AK299853 NM_001220477 NM_001220478	-158096	-	AK123372 AK296380 NM_001220479 NM_001220480	-386991	-	TSC_hg19_v1_chr12_+_81471857 BC009317 BC015769 NM_024560 AK025616 AX764482	-678292	+	BC104912 BC143485 NM_001220475 NM_001220476 AK126971 TSC_hg19_v1_chr12_-_82152435 AB210009 NM_001220473 NM_001220474	2221	-	AK307524 AF034799 NM_003625 TSC_hg19_v1_chr12_-_82153127	2959	-	CU676598 TSC_hg19_v1_chr12_-_82752167 BC020647 AF213377 AF161477 AK001156 AK225139 NM_014167	602026	-	AK294505|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK297372|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK299853|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220477|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220478|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK123372|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK296380|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220479|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220480|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##BC009317|ACSS3|79611|acyl-CoA synthetase short-chain family member 3##BC015769|ACSS3|79611|acyl-CoA synthetase short-chain family member 3##NM_024560|ACSS3|79611|acyl-CoA synthetase short-chain family member 3##AK025616|ACSS3|79611|acyl-CoA synthetase short-chain family member 3##AX764482|ACSS3|79611|acyl-CoA synthetase short-chain family member 3##BC104912|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##BC143485|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220475|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220476|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK126971|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AB210009|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220473|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220474|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK307524|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AF034799|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_003625|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##BC020647|CCDC59|29080|coiled-coil domain containing 59##AF213377|CCDC59|29080|coiled-coil domain containing 59##AF161477|CCDC59|29080|coiled-coil domain containing 59##AK001156|CCDC59|29080|coiled-coil domain containing 59##AK225139|CCDC59|29080|coiled-coil domain containing 59##NM_014167|CCDC59|29080|coiled-coil domain containing 59	0.0	
chr7	152104140	152104263	reg1001023.p1	4.244	+	TSC_hg19_v1_chr7_+_151722852 AK025287	-381349	+	TSC_hg19_v1_chr7_+_151722826 AK298911	-381369	+	TSC_hg19_v1_chr7_+_151722782 NM_022087	-381404	+	TSC_hg19_v1_chr7_-_152133040 AY024361	28791	-	TSC_hg19_v1_chr7_-_152133074 NM_170606	28880	-	TSC_hg19_v1_chr7_+_152161285 BC036622	57038	+	AK025287|GALNT11|63917|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11)##AK298911|GALNT11|63917|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11)##NM_022087|GALNT11|63917|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11)##AY024361|MLL3|58508|myeloid/lymphoid or mixed-lineage leukemia 3##NM_170606|MLL3|58508|myeloid/lymphoid or mixed-lineage leukemia 3##BC036622|LOC100128822|100128822|uncharacterized LOC100128822	0.0	
chr17	49337562	49337678	reg1001618.p1	4.239	+	TSC_hg19_v1_chr17_-_49337405 BC034364 NM_017643 AK124061	-166	-	NM_001018138 TSC_hg19_v1_chr17_+_49244173 BT007045 CR541718	-93484	+	TSC_hg19_v1_chr17_+_49243771 M36981 X58965 BC095458 NM_001018139 L16785 BC002476	-93787	+	TSC_hg19_v1_chr17_+_49337888 AK026355	266	+	TSC_hg19_v1_chr17_+_49337906 NM_016001	279	+	AF151806 TSC_hg19_v1_chr17_+_49337913 AK314399 BC025276 BC001535	305	+	BC034364|MBTD1|54799|mbt domain containing 1##NM_017643|MBTD1|54799|mbt domain containing 1##AK124061|MBTD1|54799|mbt domain containing 1##NM_001018138|NME2|4831|non-metastatic cells 2, protein (NM23B) expressed in##BT007045|NME2|4831|non-metastatic cells 2, protein (NM23B) expressed in##CR541718|NME2|4831|non-metastatic cells 2, protein (NM23B) expressed in##M36981|NME2|4831|non-metastatic cells 2, protein (NM23B) expressed in##X58965|NME2|4831|non-metastatic cells 2, protein (NM23B) expressed in##BC095458|NME2|4831|non-metastatic cells 2, protein (NM23B) expressed in##NM_001018139|NME2|4831|non-metastatic cells 2, protein (NM23B) expressed in##L16785|NME2|4831|non-metastatic cells 2, protein (NM23B) expressed in##BC002476|NME2|4831|non-metastatic cells 2, protein (NM23B) expressed in##AK026355|UTP18|51096|UTP18 small subunit (SSU) processome component homolog (yeast)##NM_016001|UTP18|51096|UTP18 small subunit (SSU) processome component homolog (yeast)##AF151806|UTP18|51096|UTP18 small subunit (SSU) processome component homolog (yeast)##AK314399|UTP18|51096|UTP18 small subunit (SSU) processome component homolog (yeast)##BC025276|UTP18|51096|UTP18 small subunit (SSU) processome component homolog (yeast)##BC001535|UTP18|51096|UTP18 small subunit (SSU) processome component homolog (yeast)	0.053142	
chrX	22210627	22210708	reg1001178.p1	4.239	+	NM_000444 U87284 AD000712 AK298030 BC105057 BC105059 U75645 U60475	-159642	+	NM_004595 TSC_hg19_v1_chrX_+_21958824 AD001528 AK293455 AK313834 BC009898 BC085621 EU176347	-251841	+	AK091850 NM_206923	-336563	+	GQ355336 NM_152577 AK098601 BC074910 BC126190 BC126192 HQ258412 HQ258552	80401	+	AY039237 NM_182699 BC067878 BC051703	807417	+	AK298796 NM_173495 AK054858 BC121061	1142393	+	NM_000444|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##U87284|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##AD000712|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##AK298030|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##BC105057|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##BC105059|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##U75645|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##U60475|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##NM_004595|SMS|6611|spermine synthase##AD001528|SMS|6611|spermine synthase##AK293455|SMS|6611|spermine synthase##AK313834|SMS|6611|spermine synthase##BC009898|SMS|6611|spermine synthase##BC085621|SMS|6611|spermine synthase##EU176347|SMS|6611|spermine synthase##AK091850|YY2|404281|YY2 transcription factor##NM_206923|YY2|404281|YY2 transcription factor##GQ355336|ZNF645|158506|zinc finger protein 645##NM_152577|ZNF645|158506|zinc finger protein 645##AK098601|ZNF645|158506|zinc finger protein 645##BC074910|ZNF645|158506|zinc finger protein 645##BC126190|ZNF645|158506|zinc finger protein 645##BC126192|ZNF645|158506|zinc finger protein 645##HQ258412|ZNF645|158506|zinc finger protein 645##HQ258552|ZNF645|158506|zinc finger protein 645##AY039237|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##NM_182699|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##BC067878|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##BC051703|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##AK298796|PTCHD1|139411|patched domain containing 1##NM_173495|PTCHD1|139411|patched domain containing 1##AK054858|PTCHD1|139411|patched domain containing 1##BC121061|PTCHD1|139411|patched domain containing 1	0.0	
chr15	52104969	52105132	reg1001268.p1	4.233	+	TSC_hg19_v1_chr15_+_52043793 NM_001142885 NM_014548 BC036184 BC064961 BC052749 AF177169 AK293823 AK292733	-61227	+	NM_001143917 TSC_hg19_v1_chr15_-_52043732 BC022075	-61335	-	TSC_hg19_v1_chr15_-_52030323 AY125955 BC033515 NM_153374	-74791	-	TSC_hg19_v1_chr15_+_52121827 NM_014547 AK312569	16777	+	TSC_hg19_v1_chr15_+_52121876 BX647277 AF177171 BC020542	16969	+	TSC_hg19_v1_chr15_+_52201590 AK025704	96560	+	NM_001142885|TMOD2|29767|tropomodulin 2 (neuronal)##NM_014548|TMOD2|29767|tropomodulin 2 (neuronal)##BC036184|TMOD2|29767|tropomodulin 2 (neuronal)##BC064961|TMOD2|29767|tropomodulin 2 (neuronal)##AF177169|TMOD2|29767|tropomodulin 2 (neuronal)##AK293823|TMOD2|29767|tropomodulin 2 (neuronal)##AK292733|TMOD2|29767|tropomodulin 2 (neuronal)##NM_001143917|LYSMD2|256586|LysM, putative peptidoglycan-binding, domain containing 2##BC022075|LYSMD2|256586|LysM, putative peptidoglycan-binding, domain containing 2##AY125955|LYSMD2|256586|LysM, putative peptidoglycan-binding, domain containing 2##BC033515|LYSMD2|256586|LysM, putative peptidoglycan-binding, domain containing 2##NM_153374|LYSMD2|256586|LysM, putative peptidoglycan-binding, domain containing 2##NM_014547|TMOD3|29766|tropomodulin 3 (ubiquitous)##AK312569|TMOD3|29766|tropomodulin 3 (ubiquitous)##BX647277|TMOD3|29766|tropomodulin 3 (ubiquitous)##AF177171|TMOD3|29766|tropomodulin 3 (ubiquitous)##BC020542|TMOD3|29766|tropomodulin 3 (ubiquitous)##AK025704|TMOD3|29766|tropomodulin 3 (ubiquitous)	0.111646	
chr7	61906546	61906634	reg1001009.p1	4.232	+	AK131575 NM_001159279	-4396708	+	AF277624 NM_033273	-4699020	-	Y10275 TSC_hg19_v1_chr7_-_56184079 BC043523 NM_001145712	-5722547	-	NM_001159522	1599230	+	NM_001159524	1760990	+	BC033523 NM_153363	1782261	+	AK131575|ZNF716|441234|zinc finger protein 716##NM_001159279|ZNF716|441234|zinc finger protein 716##AF277624|ZNF479|90827|zinc finger protein 479##NM_033273|ZNF479|90827|zinc finger protein 479##BC043523|LOC389493|389493|uncharacterized protein LOC389493##NM_001145712|LOC389493|389493|uncharacterized protein LOC389493##NM_001159522|ZNF727|442319|zinc finger protein 727##NM_001159524|ZNF735|730291|zinc finger protein 735##BC033523|ZNF679|168417|zinc finger protein 679##NM_153363|ZNF679|168417|zinc finger protein 679	0.0	
chr7	23053880	23054062	reg1000233.p2	4.231	+	TSC_hg19_v1_chr7_-_23053750 BC018710 NM_032581	-221	-	AB030241 AK056319 AK297399 TSC_hg19_v1_chr7_-_23053708 AL833296	-276	-	CR456960 BC071973 NM_019059 TSC_hg19_v1_chr7_-_22862463 BC001732 AJ011007 AF086336 AF150733	-191528	-	TSC_hg19_v1_chr7_+_23145396 NM_001031710 NM_001172428 AK297421 AK056390	91401	+	TSC_hg19_v1_chr7_+_23145403 AK297595 AL136597 AK296219 AK297369 BC039585 BC009555 AF111113 AK290479 EF560731 EU831631 EU831716 EU831829	91553	+	NM_018846	91945	+	BC018710|FAM126A|84668|family with sequence similarity 126, member A##NM_032581|FAM126A|84668|family with sequence similarity 126, member A##AB030241|FAM126A|84668|family with sequence similarity 126, member A##AK056319|FAM126A|84668|family with sequence similarity 126, member A##AK297399|FAM126A|84668|family with sequence similarity 126, member A##AL833296|FAM126A|84668|family with sequence similarity 126, member A##CR456960|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##BC071973|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##NM_019059|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##BC001732|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AJ011007|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AF086336|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AF150733|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##NM_001031710|KLHL7|55975|kelch-like 7 (Drosophila)##NM_001172428|KLHL7|55975|kelch-like 7 (Drosophila)##AK297421|KLHL7|55975|kelch-like 7 (Drosophila)##AK056390|KLHL7|55975|kelch-like 7 (Drosophila)##AK297595|KLHL7|55975|kelch-like 7 (Drosophila)##AL136597|KLHL7|55975|kelch-like 7 (Drosophila)##AK296219|KLHL7|55975|kelch-like 7 (Drosophila)##AK297369|KLHL7|55975|kelch-like 7 (Drosophila)##BC039585|KLHL7|55975|kelch-like 7 (Drosophila)##BC009555|KLHL7|55975|kelch-like 7 (Drosophila)##AF111113|KLHL7|55975|kelch-like 7 (Drosophila)##AK290479|KLHL7|55975|kelch-like 7 (Drosophila)##EF560731|KLHL7|55975|kelch-like 7 (Drosophila)##EU831631|KLHL7|55975|kelch-like 7 (Drosophila)##EU831716|KLHL7|55975|kelch-like 7 (Drosophila)##EU831829|KLHL7|55975|kelch-like 7 (Drosophila)##NM_018846|KLHL7|55975|kelch-like 7 (Drosophila)	0.486345	
chr10	1095278	1095405	reg1001402.p1	4.229	+	AK303669 NM_004508	-282	-	BC050720 TSC_hg19_v1_chr10_+_1095034 BC018045 BC046483	-326	+	AK311110 TSC_hg19_v1_chr10_-_1094867	-471	-	TSC_hg19_v1_chr10_+_1095443 AB023199	119	+	TSC_hg19_v1_chr10_+_1102351 BC018044	6982	+	BC057827 TSC_hg19_v1_chr10_-_1102645	7311	-	AK303669|IDI1|3422|isopentenyl-diphosphate delta isomerase 1##NM_004508|IDI1|3422|isopentenyl-diphosphate delta isomerase 1##AK311110|IDI1|3422|isopentenyl-diphosphate delta isomerase 1##AB023199|WDR37|22884|WD repeat domain 37##BC018044|WDR37|22884|WD repeat domain 37##BC057827|IDI1|3422|isopentenyl-diphosphate delta isomerase 1	0.66883	denovo_WM_21:11:0.623
chr13	77875849	77875977	reg1001215.p1	4.229	+	TSC_hg19_v1_chr13_-_77601303 AK314442 NM_012158	-274582	-	TSC_hg19_v1_chr13_-_77601295 AL833187 BC063796 BC072448	-274631	-	TSC_hg19_v1_chr13_+_77566215 NM_006493 AB528107 AK075109 AK304001	-309744	+	NM_015057 TSC_hg19_v1_chr13_-_77901230	25290	-	NM_001160706 NM_003843 NM_144777 BC020726 AF045941 AK025320 AK222720 AK301659	233938	+	TSC_hg19_v1_chr13_+_78271822 NM_001242868	395991	+	AK314442|FBXL3|26224|F-box and leucine-rich repeat protein 3##NM_012158|FBXL3|26224|F-box and leucine-rich repeat protein 3##AL833187|FBXL3|26224|F-box and leucine-rich repeat protein 3##BC063796|FBXL3|26224|F-box and leucine-rich repeat protein 3##BC072448|FBXL3|26224|F-box and leucine-rich repeat protein 3##NM_006493|CLN5|1203|ceroid-lipofuscinosis, neuronal 5##AK075109|CLN5|1203|ceroid-lipofuscinosis, neuronal 5##AK304001|CLN5|1203|ceroid-lipofuscinosis, neuronal 5##NM_015057|MYCBP2|23077|MYC binding protein 2##NM_001160706|SCEL|8796|sciellin##NM_003843|SCEL|8796|sciellin##NM_144777|SCEL|8796|sciellin##BC020726|SCEL|8796|sciellin##AF045941|SCEL|8796|sciellin##AK025320|SCEL|8796|sciellin##AK222720|SCEL|8796|sciellin##AK301659|SCEL|8796|sciellin##NM_001242868|SLAIN1|122060|SLAIN motif family, member 1	0.0	
chr11	64794766	64794887	reg1001495.p1	4.227	+	NM_001199745 NM_001667 AK223502 TSC_hg19_v1_chr11_+_64781642 BC002530 AK096447 L13687 EU832671 EU832750 AB527923 AK294580 AF493888 BT006674	-13195	+	AB463431 AK096702 HM134154 NM_138456	-30374	-	BC106951 BC106952 NM_001037225	-67218	-	NM_013306 NM_147777 TSC_hg19_v1_chr11_+_64794948 BC012767 BC014520 AK315642 AK315034 AF001435 BC009897 AF175267 AB527759 CU679523 AF175268 BT006631 AB209439	119	+	NM_013299 TSC_hg19_v1_chr11_+_64808377	13555	+	TSC_hg19_v1_chr11_+_64808404 BC007448 U79266	13592	+	NM_001199745|ARL2|402|ADP-ribosylation factor-like 2##NM_001667|ARL2|402|ADP-ribosylation factor-like 2##AK223502|ARL2|402|ADP-ribosylation factor-like 2##BC002530|ARL2|402|ADP-ribosylation factor-like 2##AK096447|ARL2-SNX15|100528018|ARL2-SNX15 readthrough##L13687|ARL2|402|ADP-ribosylation factor-like 2##EU832671|ARL2|402|ADP-ribosylation factor-like 2##EU832750|ARL2|402|ADP-ribosylation factor-like 2##AK294580|ARL2|402|ADP-ribosylation factor-like 2##AF493888|ARL2|402|ADP-ribosylation factor-like 2##BT006674|ARL2|402|ADP-ribosylation factor-like 2##AK096702|BATF2|116071|basic leucine zipper transcription factor, ATF-like 2##HM134154|BATF2|116071|basic leucine zipper transcription factor, ATF-like 2##NM_138456|BATF2|116071|basic leucine zipper transcription factor, ATF-like 2##BC106951|C11orf85|283129|chromosome 11 open reading frame 85##BC106952|C11orf85|283129|chromosome 11 open reading frame 85##NM_001037225|C11orf85|283129|chromosome 11 open reading frame 85##NM_013306|SNX15|29907|sorting nexin 15##NM_147777|SNX15|29907|sorting nexin 15##BC012767|SNX15|29907|sorting nexin 15##BC014520|SNX15|29907|sorting nexin 15##AK315642|SNX15|29907|sorting nexin 15##AK315034|SNX15|29907|sorting nexin 15##AF001435|SNX15|29907|sorting nexin 15##BC009897|SNX15|29907|sorting nexin 15##AF175267|SNX15|29907|sorting nexin 15##AF175268|SNX15|29907|sorting nexin 15##BT006631|SNX15|29907|sorting nexin 15##AB209439|SNX15|29907|sorting nexin 15##NM_013299|SAC3D1|29901|SAC3 domain containing 1##BC007448|SAC3D1|29901|SAC3 domain containing 1##U79266|SAC3D1|29901|SAC3 domain containing 1	0.0	
chr5	74632797	74632927	reg1000854.p1	4.227	+	AK097510 NM_001164443	-100160	-	AF132035 NM_016591	-306139	-	AB020695 NM_015566 AK290004	-470224	-	NM_000859 NM_001130996 TSC_hg19_v1_chr5_+_74633004	142	+	TSC_hg19_v1_chr5_+_74633022 BC024180	167	+	TSC_hg19_v1_chr5_+_74633061 AK299655 BC033692 AK292892	190	+	AK097510|ANKRD31|256006|ankyrin repeat domain 31##NM_001164443|ANKRD31|256006|ankyrin repeat domain 31##AF132035|GCNT4|51301|glucosaminyl (N-acetyl) transferase 4, core 2##NM_016591|GCNT4|51301|glucosaminyl (N-acetyl) transferase 4, core 2##AB020695|FAM169A|26049|family with sequence similarity 169, member A##NM_015566|FAM169A|26049|family with sequence similarity 169, member A##AK290004|FAM169A|26049|family with sequence similarity 169, member A##NM_000859|HMGCR|3156|3-hydroxy-3-methylglutaryl-CoA reductase##NM_001130996|HMGCR|3156|3-hydroxy-3-methylglutaryl-CoA reductase##BC024180|HMGCR|3156|3-hydroxy-3-methylglutaryl-CoA reductase##AK299655|HMGCR|3156|3-hydroxy-3-methylglutaryl-CoA reductase##BC033692|HMGCR|3156|3-hydroxy-3-methylglutaryl-CoA reductase##AK292892|HMGCR|3156|3-hydroxy-3-methylglutaryl-CoA reductase	1.014309	denovo_WM_21:-17:0.304	denovo_WM_21:-51:0.604
chr11	119066515	119066623	reg1001356.p2	4.224	+	NM_001168468 NM_024791 AK026409 AK091966 AK298333 AX747282 BX648391 TSC_hg19_v1_chr11_+_119056183 AK315403 BC029042 AY047359 CU688588 AB094096	-10383	+	TSC_hg19_v1_chr11_+_119039454 BX647705 AB094095 BC023974 NM_024618 NM_170722 AK303002 AK291716 BC110890	-27122	+	TSC_hg19_v1_chr11_+_119020572 AJ308237 AJ308238 AJ300465	-45945	+	NM_001145018	14	-	TSC_hg19_v1_chr11_-_119076895 BC043548	10329	-	TSC_hg19_v1_chr11_+_119076992 X57110 NM_005188	10414	+	NM_001168468|PDZD3|79849|PDZ domain containing 3##NM_024791|PDZD3|79849|PDZ domain containing 3##AK026409|PDZD3|79849|PDZ domain containing 3##AK091966|PDZD3|79849|PDZ domain containing 3##AK298333|PDZD3|79849|PDZ domain containing 3##BX648391|PDZD3|79849|PDZ domain containing 3##AK315403|PDZD3|79849|PDZ domain containing 3##BC029042|PDZD3|79849|PDZ domain containing 3##AY047359|PDZD3|79849|PDZ domain containing 3##AB094096|PDZD3|79849|PDZ domain containing 3##BX647705|NLRX1|79671|NLR family member X1##AB094095|NLRX1|79671|NLR family member X1##BC023974|NLRX1|79671|NLR family member X1##NM_024618|NLRX1|79671|NLR family member X1##NM_170722|NLRX1|79671|NLR family member X1##AK303002|NLRX1|79671|NLR family member X1##AK291716|NLRX1|79671|NLR family member X1##BC110890|NLRX1|79671|NLR family member X1##AJ308237|ABCG4|64137|ATP-binding cassette, sub-family G (WHITE), member 4##AJ308238|ABCG4|64137|ATP-binding cassette, sub-family G (WHITE), member 4##AJ300465|ABCG4|64137|ATP-binding cassette, sub-family G (WHITE), member 4##NM_001145018|CCDC153|283152|coiled-coil domain containing 153##BC043548|CCDC153|283152|coiled-coil domain containing 153##X57110|CBL|867|Cas-Br-M (murine) ecotropic retroviral transforming sequence##NM_005188|CBL|867|Cas-Br-M (murine) ecotropic retroviral transforming sequence	0.0	
chr19	45418381	45418487	reg1001061.p1	4.224	+	TSC_hg19_v1_chr19_+_45418068 BC009698 AB528369 AM392727 GQ129384 GQ129385 BT007142 CR456907	-329	+	NM_001645 TSC_hg19_v1_chr19_+_45417961 AK312036	-490	+	AF308154 AF308155 BC055093 AK225971 TSC_hg19_v1_chr19_+_45417581	-856	+	AK126257 NM_001646 BC020723 EF371378	27080	+	TSC_hg19_v1_chr19_+_45449242 NM_000483	30801	+	AF113884 TSC_hg19_v1_chr19_+_45452536	34049	+	BC009698|APOC1|341|apolipoprotein C-I##AM392727|APOC1|341|apolipoprotein C-I##GQ129384|APOC1|341|apolipoprotein C-I##GQ129385|APOC1|341|apolipoprotein C-I##BT007142|APOC1|341|apolipoprotein C-I##CR456907|APOC1|341|apolipoprotein C-I##NM_001645|APOC1|341|apolipoprotein C-I##AK312036|APOC1|341|apolipoprotein C-I##BC055093|APOC1|341|apolipoprotein C-I##AK225971|APOC1|341|apolipoprotein C-I##AK126257|APOC4-APOC2|100533990|APOC4-APOC2 readthrough##NM_001646|APOC4|346|apolipoprotein C-IV##BC020723|APOC4|346|apolipoprotein C-IV##EF371378|APOC4|346|apolipoprotein C-IV##NM_000483|APOC2|344|apolipoprotein C-II##AF113884|APOC2|344|apolipoprotein C-II	0.222308	denovo_WM_21:7:0.222
chr19	12273617	12273687	reg1001001.p1	4.223	+	BC007868 AK096560 AK292455 NM_145233 TSC_hg19_v1_chr19_-_12267555	-6106	-	AL080125 AK023094 BC036714 TSC_hg19_v1_chr19_-_12251166 NM_001203250 NM_021143	-22496	-	AK128700 TSC_hg19_v1_chr19_+_12203111 AK124155	-70539	+	TSC_hg19_v1_chr19_+_12273910 NM_003437 AK291242 BC006421 AK299601 U09367	257	+	AK023304 TSC_hg19_v1_chr19_+_12305836	32181	+	TSC_hg19_v1_chr19_+_12305871 AK093188 AX721123	32254	+	BC007868|ZNF625|90589|zinc finger protein 625##AK096560|ZNF625-ZNF20|100529855|ZNF625-ZNF20 readthrough##AK292455|ZNF625-ZNF20|100529855|ZNF625-ZNF20 readthrough##NM_145233|ZNF625|90589|zinc finger protein 625##AL080125|ZNF20|7568|zinc finger protein 20##AK023094|ZNF20|7568|zinc finger protein 20##BC036714|ZNF20|7568|zinc finger protein 20##NM_001203250|ZNF20|7568|zinc finger protein 20##NM_021143|ZNF20|7568|zinc finger protein 20##AK128700|ZNF788|388507|zinc finger family member 788##NM_003437|ZNF136|7695|zinc finger protein 136##AK291242|ZNF136|7695|zinc finger protein 136##BC006421|ZNF136|7695|zinc finger protein 136##AK299601|ZNF136|7695|zinc finger protein 136##U09367|ZNF136|7695|zinc finger protein 136##AK023304|LOC100289333|100289333|uncharacterized LOC100289333	0.0	
chr9	124855584	124855695	reg1001530.p1	4.222	+	TSC_hg19_v1_chr9_-_124855560 AK125178	-51	-	AY032952 NM_138709	-350576	+	TSC_hg19_v1_chr9_+_124461442 AF367051	-394133	+	AF521886 NM_001139442 NM_194252	245	-	TSC_hg19_v1_chr9_-_124922039 BC001016 AF044953	66373	-	TSC_hg19_v1_chr9_-_124922059 AK314135 AK301520 NM_014222	66434	-	AK125178|TTLL11|158135|tubulin tyrosine ligase-like family, member 11##AY032952|DAB2IP|153090|DAB2 interacting protein##NM_138709|DAB2IP|153090|DAB2 interacting protein##AF367051|DAB2IP|153090|DAB2 interacting protein##AF521886|TTLL11|158135|tubulin tyrosine ligase-like family, member 11##NM_001139442|TTLL11|158135|tubulin tyrosine ligase-like family, member 11##NM_194252|TTLL11|158135|tubulin tyrosine ligase-like family, member 11##BC001016|NDUFA8|4702|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8, 19kDa##AF044953|NDUFA8|4702|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8, 19kDa##AK314135|NDUFA8|4702|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8, 19kDa##NM_014222|NDUFA8|4702|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8, 19kDa	0.0	
chr14	45605002	45605118	reg1001149.p1	4.221	+	TSC_hg19_v1_chr14_-_45603685 AK311915 BC020809 M90820 AK222993 M96256 NM_002013	-1354	-	AB528407 BT006904 CU677595 DQ890734 DQ891132 DQ893906 DQ894311 TSC_hg19_v1_chr14_-_45603667	-1398	-	TSC_hg19_v1_chr14_+_45553323 NM_017922 AK308415 BC028683 AK307530 AK000673 BC125126 BC125127	-51751	+	TSC_hg19_v1_chr14_+_45605134 NM_020937 BC036056	65	+	AK093422 AX748116 TSC_hg19_v1_chr14_+_45605142	82	+	TSC_hg19_v1_chr14_+_45605166 DQ140356 BC140776 BC144511 CU690276	129	+	AK311915|FKBP3|2287|FK506 binding protein 3, 25kDa##BC020809|FKBP3|2287|FK506 binding protein 3, 25kDa##AK222993|FKBP3|2287|FK506 binding protein 3, 25kDa##M96256|FKBP3|2287|FK506 binding protein 3, 25kDa##NM_002013|FKBP3|2287|FK506 binding protein 3, 25kDa##BT006904|FKBP3|2287|FK506 binding protein 3, 25kDa##DQ890734|FKBP3|2287|FK506 binding protein 3, 25kDa##DQ891132|FKBP3|2287|FK506 binding protein 3, 25kDa##DQ893906|FKBP3|2287|FK506 binding protein 3, 25kDa##DQ894311|FKBP3|2287|FK506 binding protein 3, 25kDa##NM_017922|PRPF39|55015|PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)##AK308415|PRPF39|55015|PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)##BC028683|PRPF39|55015|PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)##AK307530|PRPF39|55015|PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)##AK000673|PRPF39|55015|PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)##BC125126|PRPF39|55015|PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)##BC125127|PRPF39|55015|PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)##NM_020937|FANCM|57697|Fanconi anemia, complementation group M##BC036056|FANCM|57697|Fanconi anemia, complementation group M##AK093422|FANCM|57697|Fanconi anemia, complementation group M##DQ140356|FANCM|57697|Fanconi anemia, complementation group M##BC140776|FANCM|57697|Fanconi anemia, complementation group M##BC144511|FANCM|57697|Fanconi anemia, complementation group M	0.0	
chr21	17260077	17260149	reg1001269.p2	4.220	+	TSC_hg19_v1_chr21_+_17102383 NM_013396 AF134213 BC015930 CU677515 CU687288 FJ763652	-157572	+	TSC_hg19_v1_chr21_+_17102300 AF170562 BC075792	-157788	+	AK289786 NM_003489 TSC_hg19_v1_chr21_-_16437302	-822896	-	TSC_hg19_v1_chr21_+_18885168 NM_001207063 NM_001207064 NM_001207065 NM_001207066 NM_001338	1625050	+	TSC_hg19_v1_chr21_+_18885364 BC003684 AK313526 BC010536 Y07593 DQ891181 DQ894363 AF124598 AY072910 AY072911 AY072912 BT019876 GU474812 U90716	1625258	+	D64110 TSC_hg19_v1_chr21_-_18985177 BC011957	1725027	-	NM_013396|USP25|29761|ubiquitin specific peptidase 25##AF134213|USP25|29761|ubiquitin specific peptidase 25##BC015930|USP25|29761|ubiquitin specific peptidase 25##FJ763652|USP25|29761|ubiquitin specific peptidase 25##AF170562|USP25|29761|ubiquitin specific peptidase 25##BC075792|USP25|29761|ubiquitin specific peptidase 25##AK289786|NRIP1|8204|nuclear receptor interacting protein 1##NM_003489|NRIP1|8204|nuclear receptor interacting protein 1##NM_001207063|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001207064|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001207065|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001207066|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001338|CXADR|1525|coxsackie virus and adenovirus receptor##BC003684|CXADR|1525|coxsackie virus and adenovirus receptor##AK313526|CXADR|1525|coxsackie virus and adenovirus receptor##BC010536|CXADR|1525|coxsackie virus and adenovirus receptor##Y07593|CXADR|1525|coxsackie virus and adenovirus receptor##DQ891181|CXADR|1525|coxsackie virus and adenovirus receptor##DQ894363|CXADR|1525|coxsackie virus and adenovirus receptor##AF124598|CXADR|1525|coxsackie virus and adenovirus receptor##AY072910|CXADR|1525|coxsackie virus and adenovirus receptor##AY072911|CXADR|1525|coxsackie virus and adenovirus receptor##AY072912|CXADR|1525|coxsackie virus and adenovirus receptor##BT019876|CXADR|1525|coxsackie virus and adenovirus receptor##GU474812|CXADR|1525|coxsackie virus and adenovirus receptor##U90716|CXADR|1525|coxsackie virus and adenovirus receptor##D64110|BTG3|10950|BTG family, member 3##BC011957|BTG3|10950|BTG family, member 3	0.0	
chr13	36205021	36205151	reg1001377.p2	4.219	+	AK294737 NM_001204197 TSC_hg19_v1_chr13_+_36050945 AK315939	-154161	+	BC028170 AB593021 TSC_hg19_v1_chr13_-_36050827 AB593022 AK313185 AB073388 NM_005584	-154290	-	TSC_hg19_v1_chr13_+_35516429 NM_015678 AF467288	-688628	+	AK299059 AK311183 AK295777 TSC_hg19_v1_chr13_-_36429805 CR627093 AK308925 AK311434 AK311438 AK311195 NM_001195415 NM_001195416 NM_001195430	224811	-	TSC_hg19_v1_chr13_-_36705434 AB002367 BC152456	500351	-	AK295102 TSC_hg19_v1_chr13_-_36705468	500387	-	AK294737|NBEA|26960|neurobeachin##NM_001204197|NBEA|26960|neurobeachin##AK315939|NBEA|26960|neurobeachin##BC028170|MAB21L1|4081|mab-21-like 1 (C. elegans)##AB593021|MAB21L1|4081|mab-21-like 1 (C. elegans)##AB593022|MAB21L1|4081|mab-21-like 1 (C. elegans)##AK313185|MAB21L1|4081|mab-21-like 1 (C. elegans)##AB073388|MAB21L1|4081|mab-21-like 1 (C. elegans)##NM_005584|MAB21L1|4081|mab-21-like 1 (C. elegans)##NM_015678|NBEA|26960|neurobeachin##AF467288|NBEA|26960|neurobeachin##AK299059|DCLK1|9201|doublecortin-like kinase 1##AK311183|DCLK1|9201|doublecortin-like kinase 1##AK295777|DCLK1|9201|doublecortin-like kinase 1##CR627093|DCLK1|9201|doublecortin-like kinase 1##AK308925|DCLK1|9201|doublecortin-like kinase 1##AK311434|DCLK1|9201|doublecortin-like kinase 1##AK311438|DCLK1|9201|doublecortin-like kinase 1##AK311195|DCLK1|9201|doublecortin-like kinase 1##NM_001195415|DCLK1|9201|doublecortin-like kinase 1##NM_001195416|DCLK1|9201|doublecortin-like kinase 1##NM_001195430|DCLK1|9201|doublecortin-like kinase 1##AB002367|DCLK1|9201|doublecortin-like kinase 1##BC152456|DCLK1|9201|doublecortin-like kinase 1##AK295102|DCLK1|9201|doublecortin-like kinase 1	0.0	
chr11	65819568	65819683	reg1001164.p1	4.216	+	AB053232 NM_033036	-2975	-	AF407333 AB527999 CU689580 BC036522 BC032950 NM_053054	-25707	-	NM_001323 BC031334 U62800 U81233 CR456872	-40137	+	TSC_hg19_v1_chr11_+_65819834 NM_006842 AK290850 BC010372 BC053577 BX537771 AB463285 BC000401 U41371	215	+	TSC_hg19_v1_chr11_+_65837841 AK096644 NM_018026 AK098336 AY320283 BC010096 BC052577	18285	+	TSC_hg19_v1_chr11_+_65984213 AB033001	164597	+	AB053232|GAL3ST3|89792|galactose-3-O-sulfotransferase 3##NM_033036|GAL3ST3|89792|galactose-3-O-sulfotransferase 3##AF407333|CATSPER1|117144|cation channel, sperm associated 1##BC036522|CATSPER1|117144|cation channel, sperm associated 1##BC032950|CATSPER1|117144|cation channel, sperm associated 1##NM_053054|CATSPER1|117144|cation channel, sperm associated 1##NM_001323|CST6|1474|cystatin E/M##BC031334|CST6|1474|cystatin E/M##U62800|CST6|1474|cystatin E/M##U81233|CST6|1474|cystatin E/M##CR456872|CST6|1474|cystatin E/M##NM_006842|SF3B2|10992|splicing factor 3b, subunit 2, 145kDa##AK290850|SF3B2|10992|splicing factor 3b, subunit 2, 145kDa##BC053577|SF3B2|10992|splicing factor 3b, subunit 2, 145kDa##BX537771|SF3B2|10992|splicing factor 3b, subunit 2, 145kDa##BC000401|SF3B2|10992|splicing factor 3b, subunit 2, 145kDa##U41371|SF3B2|10992|splicing factor 3b, subunit 2, 145kDa##AK096644|PACS1|55690|phosphofurin acidic cluster sorting protein 1##NM_018026|PACS1|55690|phosphofurin acidic cluster sorting protein 1##AK098336|PACS1|55690|phosphofurin acidic cluster sorting protein 1##AY320283|PACS1|55690|phosphofurin acidic cluster sorting protein 1##BC010096|PACS1|55690|phosphofurin acidic cluster sorting protein 1##BC052577|PACS1|55690|phosphofurin acidic cluster sorting protein 1##AB033001|PACS1|55690|phosphofurin acidic cluster sorting protein 1	0.0	
chr3	105588129	105588248	reg1000899.p2	4.216	+	TSC_hg19_v1_chr3_-_105587818 AK094184 AK292792 BC032851 NM_170662 U26710 U26711 U26712	-381	-	CR749655 TSC_hg19_v1_chr3_-_105421064	-167134	-	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	-502366	+	TSC_hg19_v1_chr3_-_106959482 BC036229	1371291	-	TSC_hg19_v1_chr3_+_106959546 AK309100 BC039550 AK055934	1371404	+	AK058091 NM_032600 BC030780 AF367469 CU689006 DQ890829 DQ890830 DQ893985	1508122	+	AK094184|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK292792|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##BC032851|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##NM_170662|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26710|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26711|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26712|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##CR749655|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule##AK309100|LOC344595|344595|uncharacterized LOC344595##BC039550|LOC344595|344595|uncharacterized LOC344595##AK055934|LOC344595|344595|uncharacterized LOC344595##AK058091|CCDC54|84692|coiled-coil domain containing 54##NM_032600|CCDC54|84692|coiled-coil domain containing 54##BC030780|CCDC54|84692|coiled-coil domain containing 54##AF367469|CCDC54|84692|coiled-coil domain containing 54##DQ890829|CCDC54|84692|coiled-coil domain containing 54##DQ890830|CCDC54|84692|coiled-coil domain containing 54##DQ893985|CCDC54|84692|coiled-coil domain containing 54	0.854312	denovo_WM_21:-4:0.854
chr21	41346603	41346716	reg1001299.p1	4.214	+	NM_006198 U52969 AK289964 BC013791 X93349 AF416716 AM183336	-107282	+	AK092516 AX747579 NM_001080444 AB528819	-229275	+	AB020337 NM_006057 NM_033170 NM_033171 NM_033172 NM_033173	-317406	+	AB384859 AB209136 TSC_hg19_v1_chr21_-_42218650	871959	-	AF023450 NM_001389 AF217525	872392	-	AF178532 AF188276 AF188277 NM_012105 NM_138991 NM_138992	1193068	+	NM_006198|PCP4|5121|Purkinje cell protein 4##U52969|PCP4|5121|Purkinje cell protein 4##AK289964|PCP4|5121|Purkinje cell protein 4##BC013791|PCP4|5121|Purkinje cell protein 4##X93349|PCP4|5121|Purkinje cell protein 4##AF416716|PCP4|5121|Purkinje cell protein 4##AM183336|PCP4|5121|Purkinje cell protein 4##AK092516|IGSF5|150084|immunoglobulin superfamily, member 5##NM_001080444|IGSF5|150084|immunoglobulin superfamily, member 5##AB020337|B3GALT5|10317|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5##NM_006057|B3GALT5|10317|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5##NM_033170|B3GALT5|10317|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5##NM_033171|B3GALT5|10317|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5##NM_033172|B3GALT5|10317|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5##NM_033173|B3GALT5|10317|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5##AB209136|DSCAM|1826|Down syndrome cell adhesion molecule##AF023450|DSCAM|1826|Down syndrome cell adhesion molecule##NM_001389|DSCAM|1826|Down syndrome cell adhesion molecule##AF217525|DSCAM|1826|Down syndrome cell adhesion molecule##AF178532|BACE2|25825|beta-site APP-cleaving enzyme 2##AF188276|BACE2|25825|beta-site APP-cleaving enzyme 2##AF188277|BACE2|25825|beta-site APP-cleaving enzyme 2##NM_012105|BACE2|25825|beta-site APP-cleaving enzyme 2##NM_138991|BACE2|25825|beta-site APP-cleaving enzyme 2##NM_138992|BACE2|25825|beta-site APP-cleaving enzyme 2	0.158217	
chr17	29058585	29058688	reg1001343.p2	4.213	+	BC096718 BC098126 BC098273 NM_015594	-172053	+	TSC_hg19_v1_chr17_+_28804434 AK000606 AK291381 NM_001007024 NM_001007025 NM_004871 AK298714 AF047438 BC012620 AF073926 BC040471	-254203	+	AK316409 NM_001199775 AK302878	-351121	+	TSC_hg19_v1_chr17_+_29058664 BC047718	52	+	TSC_hg19_v1_chr17_-_29151711 DQ298450 DQ892276 CU692798 AK296238 AF046059 BC023567	93039	-	TSC_hg19_v1_chr17_-_29151725 AK313315 NM_015986	93127	-	BC096718|TBC1D29|26083|TBC1 domain family, member 29##BC098126|TBC1D29|26083|TBC1 domain family, member 29##BC098273|TBC1D29|26083|TBC1 domain family, member 29##NM_015594|TBC1D29|26083|TBC1 domain family, member 29##AK000606|GOSR1|9527|golgi SNAP receptor complex member 1##AK291381|GOSR1|9527|golgi SNAP receptor complex member 1##NM_001007024|GOSR1|9527|golgi SNAP receptor complex member 1##NM_001007025|GOSR1|9527|golgi SNAP receptor complex member 1##NM_004871|GOSR1|9527|golgi SNAP receptor complex member 1##AK298714|GOSR1|9527|golgi SNAP receptor complex member 1##AF047438|GOSR1|9527|golgi SNAP receptor complex member 1##BC012620|GOSR1|9527|golgi SNAP receptor complex member 1##AF073926|GOSR1|9527|golgi SNAP receptor complex member 1##BC040471|GOSR1|9527|golgi SNAP receptor complex member 1##AK316409|CPD|1362|carboxypeptidase D##NM_001199775|CPD|1362|carboxypeptidase D##AK302878|CPD|1362|carboxypeptidase D##BC047718|SUZ12P|440423|suppressor of zeste 12 homolog pseudogene##DQ298450|CRLF3|51379|cytokine receptor-like factor 3##DQ892276|CRLF3|51379|cytokine receptor-like factor 3##AK296238|CRLF3|51379|cytokine receptor-like factor 3##AF046059|CRLF3|51379|cytokine receptor-like factor 3##BC023567|CRLF3|51379|cytokine receptor-like factor 3##AK313315|CRLF3|51379|cytokine receptor-like factor 3##NM_015986|CRLF3|51379|cytokine receptor-like factor 3	0.987822	denovo_WM_21:1:0.988
chr2	200690120	200690210	reg1001275.p1	4.213	+	AK291463 NM_015265	-354177	-	TSC_hg19_v1_chr2_-_200329812 AB209376 NM_001172517	-360345	-	AB028957 TSC_hg19_v1_chr2_-_200325214	-364924	-	AB568489 TSC_hg19_v1_chr2_-_200715872	25698	-	BC039445 TSC_hg19_v1_chr2_-_200715916	25748	-	TSC_hg19_v1_chr2_+_200775981 NM_153689	85812	+	AK291463|SATB2|23314|SATB homeobox 2##NM_015265|SATB2|23314|SATB homeobox 2##AB209376|SATB2|23314|SATB homeobox 2##NM_001172517|SATB2|23314|SATB homeobox 2##AB028957|SATB2|23314|SATB homeobox 2##AB568489|FONG|348751|uncharacterized LOC348751##BC039445|FONG|348751|uncharacterized LOC348751##NM_153689|C2orf69|205327|chromosome 2 open reading frame 69	0.0	
chr19	3344311	3344402	reg1001244.p1	4.212	+	BC047522 DQ891648 DQ894837 TSC_hg19_v1_chr19_+_3224751 CU690430 AF329266	-119613	+	BC028101 NM_021938 AB209067 NM_001172673 TSC_hg19_v1_chr19_+_3224705	-119652	+	TSC_hg19_v1_chr19_+_3198814 BC008920	-145531	+	TSC_hg19_v1_chr19_+_3359531 NM_001245005 NM_205843 X12492 AK304816 AK289885	15100	+	TSC_hg19_v1_chr19_+_3366562 NM_001245002 NM_001245004 NM_005597 BC012120	22199	+	TSC_hg19_v1_chr19_+_3366580 AK297867 AK297825	22224	+	BC047522|CELF5|60680|CUGBP, Elav-like family member 5##DQ891648|CELF5|60680|CUGBP, Elav-like family member 5##DQ894837|CELF5|60680|CUGBP, Elav-like family member 5##AF329266|CELF5|60680|CUGBP, Elav-like family member 5##BC028101|CELF5|60680|CUGBP, Elav-like family member 5##NM_021938|CELF5|60680|CUGBP, Elav-like family member 5##AB209067|CELF5|60680|CUGBP, Elav-like family member 5##NM_001172673|CELF5|60680|CUGBP, Elav-like family member 5##BC008920|NCLN|56926|nicalin##NM_001245005|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##NM_205843|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##X12492|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##AK304816|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##AK289885|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##NM_001245002|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##NM_001245004|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##NM_005597|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##BC012120|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##AK297867|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##AK297825|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)	1.528092	denovo_WM_21:0:0.972	denovo_WM_21:-59:0.237
chr8	59521271	59521341	reg1001754.p1	4.211	+	TSC_hg19_v1_chr8_+_59465819 AK298697 AK312274 BC013254	-55477	+	TSC_hg19_v1_chr8_+_59465816 AF006636 AK295198 AK128645	-55499	+	BC113674 BC113676 BC143915 BC143916 TSC_hg19_v1_chr8_+_59465795 AK300647	-55517	+	TSC_hg19_v1_chr8_-_59572096 AK294009 NM_001144772 AK304884	50747	-	TSC_hg19_v1_chr8_-_59572189 X96586	50908	-	TSC_hg19_v1_chr8_-_59572336 AK292679 AK313991	51007	-	AK298697|SDCBP|6386|syndecan binding protein (syntenin)##AK312274|SDCBP|6386|syndecan binding protein (syntenin)##BC013254|SDCBP|6386|syndecan binding protein (syntenin)##AF006636|SDCBP|6386|syndecan binding protein (syntenin)##AK295198|SDCBP|6386|syndecan binding protein (syntenin)##AK128645|SDCBP|6386|syndecan binding protein (syntenin)##BC113674|SDCBP|6386|syndecan binding protein (syntenin)##BC113676|SDCBP|6386|syndecan binding protein (syntenin)##BC143915|SDCBP|6386|syndecan binding protein (syntenin)##BC143916|SDCBP|6386|syndecan binding protein (syntenin)##AK300647|SDCBP|6386|syndecan binding protein (syntenin)##AK294009|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor##NM_001144772|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor##X96586|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor##AK292679|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor##AK313991|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor	0.0	
chr3	143734640	143734790	reg1001270.p1	4.207	+	NM_001134470 AK294020	-42498	+	TSC_hg19_v1_chr3_+_143690915 BC037293	-43725	+	NM_173552 AK315082	-44063	+	AB527423 U84573 AK295084 TSC_hg19_v1_chr3_-_145878818	2144092	-	TSC_hg19_v1_chr3_-_145878972 BC037169 AB209879	2144241	-	TSC_hg19_v1_chr3_-_145879223 NM_000935 NM_182943	2144536	-	NM_001134470|C3orf58|205428|chromosome 3 open reading frame 58##AK294020|C3orf58|205428|chromosome 3 open reading frame 58##BC037293|C3orf58|205428|chromosome 3 open reading frame 58##NM_173552|C3orf58|205428|chromosome 3 open reading frame 58##AK315082|C3orf58|205428|chromosome 3 open reading frame 58##U84573|PLOD2|5352|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2##AK295084|PLOD2|5352|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2##BC037169|PLOD2|5352|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2##AB209879|PLOD2|5352|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2##NM_000935|PLOD2|5352|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2##NM_182943|PLOD2|5352|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2	0.0	
chrX	48815662	48815733	reg1000997.p2	4.207	+	TSC_hg19_v1_chrX_-_48815644 NM_001136159	-53	-	TSC_hg19_v1_chrX_-_48815601 AK294590	-90	-	TSC_hg19_v1_chrX_-_48815168 BC098440	-566	-	BC045659 NM_004979 TSC_hg19_v1_chrX_-_48828252	12554	-	TSC_hg19_v1_chrX_-_48858674 AB032993 AB527837 AK292158 BC101544 BC101546 BX647801 BX647804 NM_020137 NM_207672	42951	-	AB527281 EU446500 EU831602 EU831689 AK313540 BC001532 TSC_hg19_v1_chrX_-_48900884	85129	-	NM_001136159|OTUD5|55593|OTU domain containing 5##AK294590|OTUD5|55593|OTU domain containing 5##BC098440|OTUD5|55593|OTU domain containing 5##BC045659|KCND1|3750|potassium voltage-gated channel, Shal-related subfamily, member 1##NM_004979|KCND1|3750|potassium voltage-gated channel, Shal-related subfamily, member 1##AB032993|GRIPAP1|56850|GRIP1 associated protein 1##AK292158|GRIPAP1|56850|GRIP1 associated protein 1##BC101544|GRIPAP1|56850|GRIP1 associated protein 1##BC101546|GRIPAP1|56850|GRIP1 associated protein 1##BX647801|GRIPAP1|56850|GRIP1 associated protein 1##BX647804|GRIPAP1|56850|GRIP1 associated protein 1##NM_020137|GRIPAP1|56850|GRIP1 associated protein 1##NM_207672|GRIPAP1|56850|GRIP1 associated protein 1##EU446500|TFE3|7030|transcription factor binding to IGHM enhancer 3##EU831602|TFE3|7030|transcription factor binding to IGHM enhancer 3##EU831689|TFE3|7030|transcription factor binding to IGHM enhancer 3##AK313540|TFE3|7030|transcription factor binding to IGHM enhancer 3##BC001532|TFE3|7030|transcription factor binding to IGHM enhancer 3	0.686166	denovo_WM_21:34:0.686
chr22	46616939	46617021	reg1001417.p1	4.206	+	TSC_hg19_v1_chr22_+_46546708 AK289821	-70270	+	NM_001001928 NM_005036 AY258330 TSC_hg19_v1_chr22_+_46546555 AY258328	-70450	+	AB528792 AK001807 NM_018280 TSC_hg19_v1_chr22_-_46450052	-166968	-	TSC_hg19_v1_chr22_-_46646191 BC036462 BC067871 NM_207327 BX648331	29228	-	TSC_hg19_v1_chr22_+_46646292 AK091355	29321	+	AF116458 NM_006071 BC027601	42254	-	AK289821|PPARA|5465|peroxisome proliferator-activated receptor alpha##NM_001001928|PPARA|5465|peroxisome proliferator-activated receptor alpha##NM_005036|PPARA|5465|peroxisome proliferator-activated receptor alpha##AY258330|PPARA|5465|peroxisome proliferator-activated receptor alpha##AY258328|PPARA|5465|peroxisome proliferator-activated receptor alpha##AK001807|C22orf26|55267|chromosome 22 open reading frame 26##NM_018280|C22orf26|55267|chromosome 22 open reading frame 26##BC036462|C22orf40|150383|chromosome 22 open reading frame 40##BC067871|C22orf40|150383|chromosome 22 open reading frame 40##NM_207327|C22orf40|150383|chromosome 22 open reading frame 40##BX648331|C22orf40|150383|chromosome 22 open reading frame 40##AK091355|LOC284926|284926|uncharacterized LOC284926##AF116458|PKDREJ|10343|polycystic kidney disease (polycystin) and REJ homolog (sperm receptor for egg jelly homolog, sea urchin)##NM_006071|PKDREJ|10343|polycystic kidney disease (polycystin) and REJ homolog (sperm receptor for egg jelly homolog, sea urchin)##BC027601|PKDREJ|10343|polycystic kidney disease (polycystin) and REJ homolog (sperm receptor for egg jelly homolog, sea urchin)	0.0	
chr7	128731689	128731772	reg1001297.p1	4.200	+	TSC_hg19_v1_chr7_-_128695181 AK225999 NM_001191028 NM_012470	-36525	-	TSC_hg19_v1_chr7_-_128695168 BC009923	-36582	-	AJ133769 AF145029 TSC_hg19_v1_chr7_-_128694965 AK312580 BC068530	-36835	-	BC009989 NM_005631	96982	+	TSC_hg19_v1_chr7_+_128864883 NM_001130720 NM_015328 BC024325 AB020635 AK129958 BC008349	133099	+	TSC_hg19_v1_chr7_+_129007981 NM_001130723	276256	+	AK225999|TNPO3|23534|transportin 3##NM_001191028|TNPO3|23534|transportin 3##NM_012470|TNPO3|23534|transportin 3##BC009923|TNPO3|23534|transportin 3##AJ133769|TNPO3|23534|transportin 3##AF145029|TNPO3|23534|transportin 3##AK312580|TNPO3|23534|transportin 3##BC068530|TNPO3|23534|transportin 3##BC009989|SMO|6608|smoothened, frizzled family receptor##NM_005631|SMO|6608|smoothened, frizzled family receptor##NM_001130720|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_015328|AHCYL2|23382|adenosylhomocysteinase-like 2##BC024325|AHCYL2|23382|adenosylhomocysteinase-like 2##AB020635|AHCYL2|23382|adenosylhomocysteinase-like 2##BC008349|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_001130723|AHCYL2|23382|adenosylhomocysteinase-like 2	0.042946	
chr6	49223225	49223307	reg1001686.p1	4.199	+	TSC_hg19_v1_chr6_-_48078931 AK300335	-1144341	-	BC136779 AK123835 AK299301 NM_001013732 NM_207499	-1186862	-	BC126194 BC126198 NM_181744 AY377391 AY288419 HQ258199	-1473478	+	M65131 BC016282 TSC_hg19_v1_chr6_-_49430938 BX647789 AK312611 AK292568 NM_000255	207679	-	AK293016 NM_018132 BC016279 TSC_hg19_v1_chr6_+_49431119	207838	+	AK126371 NM_001010904	244404	+	AK300335|C6orf138|442213|chromosome 6 open reading frame 138##BC136779|C6orf138|442213|chromosome 6 open reading frame 138##AK123835|C6orf138|442213|chromosome 6 open reading frame 138##AK299301|C6orf138|442213|chromosome 6 open reading frame 138##NM_001013732|C6orf138|442213|chromosome 6 open reading frame 138##NM_207499|C6orf138|442213|chromosome 6 open reading frame 138##BC126194|OPN5|221391|opsin 5##BC126198|OPN5|221391|opsin 5##NM_181744|OPN5|221391|opsin 5##AY377391|OPN5|221391|opsin 5##AY288419|OPN5|221391|opsin 5##HQ258199|OPN5|221391|opsin 5##M65131|MUT|4594|methylmalonyl CoA mutase##BC016282|MUT|4594|methylmalonyl CoA mutase##BX647789|MUT|4594|methylmalonyl CoA mutase##AK312611|MUT|4594|methylmalonyl CoA mutase##AK292568|MUT|4594|methylmalonyl CoA mutase##NM_000255|MUT|4594|methylmalonyl CoA mutase##AK293016|CENPQ|55166|centromere protein Q##NM_018132|CENPQ|55166|centromere protein Q##BC016279|CENPQ|55166|centromere protein Q##NM_001010904|GLYATL3|389396|glycine-N-acyltransferase-like 3	0.0