CRUNCH Results

QC summary table

QC statistics for this dataset

Comparison with ENCODE datasets

Mapping

Fraction of mapped reads for the IP samples:
0.850
70th percentile
Fraction of mapped reads for the background samples:
0.866
74th percentile

ChIP enrichment signal

Noise level ChIP signal:
0.191
`
46th percentile
Error in fit of enrichment distribution:
1.038
80th percentile

Peak statistics

Number of peaks:
36955
81st percentile
Fraction of reads mapped to peaks:
0.132
91st percentile

Motif enrichment statistics

Enrichment of top motif:
40.87
87th percentile
Enrichment of complimentary motif set:
61.79
89th percentile

Quality Control, Mapping, Fragment Size Estimation:

ZNF143 Replicate 1

fragment size plot

ZNF143 Replicate 2

fragment size plot

BG Replicate 1

fragment size plot

Peak Calling:

zvalue histogram reverse cumulative of zvalues

Top peaks:


Coordinates Z-score Nearest Genes on the Left Offset of Nearest TSS on the Left (Strand) Nearest Genes on the Right Offset of Nearest TSS on the Right (Strand) denovo_WM_8 ZNF143.p2 denovo_WM_12 STAT5{A,B}.p2 denovo_WM_14
chr19:54682363..54682447 24.337 TMC4|transmembrane channel-like 4 -5527 (-) MBOAT7|membrane bound O-acyltransferase domain containing 7 9841 (-)

30:1.000, -33:1.000

25:0.997, -29:0.978

34:0.963, -38:0.983

37:0.855, -40:0.864

chr19:49310019..49310113 23.872 FGF21|fibroblast growth factor 21 -50648 (+) BCAT2|branched chain amino-acid transaminase 2, mitochondrial 4182 (-)

-28:1.000, 34:0.999

-23:0.997, 30:0.983

-32:0.980, 39:0.272

-35:0.864

chr19:55815796..55815891 23.723 BRSK1|BR serine/threonine kinase 1 -2228 (+) TMEM150B|transmembrane protein 150B 20846 (-)

-31:0.727, 32:1.000

-27:0.489, 27:0.993

36:0.980

-38:0.917, 39:0.917

chr19:49013917..49014022 23.464 CYTH2|cytohesin 2 -41300 (+) 871 (-)

-25:1.000, 36:1.000

-20:0.999, 32:1.000

-29:0.980, 41:0.980

-32:0.917, 43:0.864

chr7:150689938..150690041 22.892 NOS3|nitric oxide synthase 3 (endothelial cell) -1822 (+) NOS3|nitric oxide synthase 3 (endothelial cell) 875 (+)

-30:1.000, 31:1.000

27:0.808

-34:0.467, 36:0.908

35:0.893

-37:0.920, 38:0.511

chr19:49148176..49148277 22.226 DBP|D site of albumin promoter (albumin D-box) binding protein -7622 (-) CA11|carbonic anhydrase XI 1125 (-)

29:1.000, -33:1.000

25:0.989, -28:0.999

34:0.980, -37:0.980

36:0.920, -40:0.920

chr17:47492318..47492458 22.223 PHB|prohibitin -140 (-) NGFR|nerve growth factor receptor 80300 (+)

-8:1.000, 79:0.998

-3:0.997, -70:0.874, 75:0.919

-12:0.980, 84:0.397

-15:0.920, 86:0.512

chr19:47354267..47354386 22.210 AP2S1|adaptor-related protein complex 2, sigma 1 subunit -195 (-) ARHGAP35|Rho GTPase activating protein 35 67606 (+)

20:1.000, -22:1.000, -59:0.979, 75:1.000

15:0.999, -64:0.968, 70:0.998

24:0.968, -27:0.983, 79:0.270

24:0.933

27:0.855, -29:0.917

chr3:69788436..69788556 22.173 FRMD4B|FERM domain containing 4B -196739 (-) MITF|microphthalmia-associated transcription factor 157 (+)

-24:1.000, 45:0.998

-28:0.996

-19:0.894, 41:0.662

-17:0.512, 38:0.657

chr19:49250473..49250585 22.082 IZUMO1|izumo sperm-egg fusion 1 -434 (-) FUT1|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group) 8117 (-)

-29:1.000, 35:1.000

-25:1.000, 30:0.893

-34:0.980, 39:0.968

39:0.994

-36:0.857, 42:0.855

chr13:41768687..41768802 22.014 KBTBD7|kelch repeat and BTB (POZ) domain containing 7 -119 (-) MTRF1|mitochondrial translational release factor 1 68936 (-)

-34:0.960, 53:0.999

-5:0.458, -30:0.751, 48:0.921

57:0.241

chr8:110346342..110346474 21.962 NUDCD1|NudC domain containing 1 -37 (-) ENY2|enhancer of yellow 2 homolog (Drosophila) 185 (+)

7:0.999, -35:1.000, 65:0.449

-39:0.994, -64:0.885

-30:0.968

-31:0.663

14:0.855

chr3:50329889..50330015 21.815 IFRD2|interferon-related developmental regulator 2 -89 (-) HYAL3|hyaluronoglucosaminidase 3 NAT6|N-acetyltransferase 6 (GCN5-related) 6339 (-)

-14:0.995, 40:0.999

35:0.971, 101:0.625

44:0.656

47:0.214

chr20:62694359..62694479 21.720 TCEA2|transcription elongation factor A (SII), 2 -410 (+) TCEA2|transcription elongation factor A (SII), 2 141 (+)

15:0.998, -17:1.000, 75:0.963

-12:1.000, -61:0.365, 80:0.790

20:0.775, -21:0.931, 71:0.264

22:0.436, -24:0.702, 68:0.229

chr12:110151305..110151415 21.627 MVK|mevalonate kinase -139729 (+) C12orf34|chromosome 12 open reading frame 34 827 (+)

24:1.000, -38:0.916

20:1.000

29:0.704

31:0.368, -45:0.917

chr19:49362009..49362101 21.531 HSD17B14|hydroxysteroid (17-beta) dehydrogenase 14 -22132 (-) PLEKHA4|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4 9741 (-)

26:1.000, -35:0.966

22:0.883

31:0.803, -39:0.728

33:0.414, -42:0.917

chr19:55816983..55817087 21.524 BRSK1|BR serine/threonine kinase 1 -3420 (+) TMEM150B|transmembrane protein 150B 19654 (-)

-30:1.000, 30:1.000

-25:0.998, 26:0.220

-34:0.936, 35:0.919

-37:0.920, 37:0.864

chr19:49416518..49416625 21.502 NUCB1|nucleobindin 1 -12961 (+) DHDH|dihydrodiol dehydrogenase (dimeric) 20387 (+)

29:1.000, -34:1.000

25:0.999, -29:0.974

34:0.980, -38:0.983

36:0.864, -41:0.920

chr16:70473180..70473296 21.489 ST3GAL2|ST3 beta-galactoside alpha-2,3-sialyltransferase 2 -257 (-) FUK|fucokinase 15261 (+)

9:1.000, 44:0.988, -49:1.000

14:0.999, -53:0.356

5:0.963, -44:0.306

5:0.878

2:0.849, -42:0.214, 51:0.864

chr19:45988695..45988799 21.485 FOSB|FBJ murine osteosarcoma viral oncogene homolog B -17478 (+) RTN2|reticulon 2 7746 (-)

-22:1.000, 40:1.000

-17:1.000, 36:0.998

-26:0.936, 45:0.968

-29:0.260, 47:0.849

chr19:49248600..49248703 21.462 RASIP1|Ras interacting protein 1 -4745 (-) IZUMO1|izumo sperm-egg fusion 1 1444 (-)

30:1.000, -31:1.000

-26:0.393, 26:0.999

-35:0.728, 35:0.980

37:0.864, -38:0.864

chr17:76210233..76210349 21.441 AFMID|arylformamidase -26868 (+) BIRC5|baculoviral IAP repeat containing 5 8 (+)

-13:0.328, -45:0.999

-9:0.996, 34:0.961, -41:0.994

-50:0.980

-52:0.917

chr12:54121309..54121460 21.422 CALCOCO1|calcium binding and coiled-coil domain 1 -130 (-) HOXC13|homeobox C13 211248 (+)

34:1.000, -36:0.998, -94:0.995, 95:0.888

29:1.000, -32:0.938, -99:0.886

38:0.609

41:0.238, -87:0.448

chr17:7094941..7095032 21.387 ASGR1|asialoglycoprotein receptor 1 -12218 (-) DLG4|discs, large homolog 4 (Drosophila) 11608 (-)

21:1.000, -35:0.999

17:0.999, -30:0.479

26:0.968, -39:0.808

25:0.344

28:0.849, -42:0.349

chr19:49298763..49298876 21.349 FGF21|fibroblast growth factor 21 -39401 (+) BCAT2|branched chain amino-acid transaminase 2, mitochondrial 15429 (-)

14:0.996, -48:1.000, 94:1.000

34:0.971, -44:0.973, 89:0.995

18:0.968, -53:0.980, 98:0.963

98:0.988

21:0.849, -55:0.365, 101:0.855

chr19:48922662..48922771 21.336 GRIN2D|glutamate receptor, ionotropic, N-methyl D-aspartate 2D -24585 (+) GRWD1|glutamate-rich WD repeat containing 1 26351 (+)

-32:1.000, 41:1.000

7:0.473, -28:0.999, -82:0.656

-37:0.968, 45:0.983

-36:0.682

-39:0.855, 48:0.920

chr10:103113616..103113764 21.335 LBX1|ladybird homeobox 1 -124988 (-) BTRC|beta-transducin repeat containing 182 (+)

0:0.926, 60:0.999, -85:1.000

-4:0.998

56:0.919, -89:0.983

53:0.920, -92:0.864

chr20:62587826..62587942 21.156 UCKL1|uridine-cytidine kinase 1-like 1 -109 (-) ZNF512B|zinc finger protein 512B 13389 (-)

0:0.999, 30:0.999, -31:0.999, 61:0.999, -62:0.999

3:0.974, -27:0.974, 34:0.974, -58:0.974, 65:0.974

-5:0.530, 25:0.530, -36:0.530, 56:0.530, -67:0.530, 93:0.254

-7:0.917, 23:0.917, -38:0.917, 54:0.917, -69:0.917

chr19:49385135..49385230 21.132 PPP1R15A|protein phosphatase 1, regulatory subunit 15A -8693 (+) TULP2|tubby like protein 2 16784 (-)

-31:1.000, 31:0.998

-27:0.697

35:0.963, -36:0.983

-38:0.864, 38:0.855

chr1:2457649..2457765 20.996 PLCH2|phospholipase C, eta 2 -49950 (+) PANK4|pantothenate kinase 4 357 (-)

-24:0.997, 34:0.992, -63:0.988, 70:0.992

-59:0.869

-17:0.645, 27:0.917, 63:0.917, -70:0.222

chr18:71815636..71815776 20.989 FBXO15|F-box protein 15 -679 (-) TIMM21|translocase of inner mitochondrial membrane 21 homolog (yeast) 88 (+)

30:0.982, -38:1.000

-43:0.950, 53:0.431

25:0.270, -34:0.958

-31:0.754

chr12:49245955..49246078 20.941 DDX23|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 -84 (-) RND1|Rho family GTPase 1 13584 (-)

27:1.000, 76:0.957

32:0.653, -36:0.991, 72:0.843

23:0.274

chr14:81408106..81408227 20.941 CEP128|centrosomal protein 128kDa -108 (-) TSHR|thyroid stimulating hormone receptor 13700 (+)

-26:1.000, 45:1.000

-31:0.990, 49:0.700

-22:0.980, 40:0.354

-19:0.917, 38:0.380

chr19:47552051..47552158 20.814 TMEM160|transmembrane protein 160 -208 (-) ZC3H4|zinc finger CCCH-type containing 4 63382 (-)

-16:0.995, 46:1.000

-11:0.736, 42:0.986

-20:0.604, 51:0.983

-23:0.581, 53:0.864

chr20:32398923..32399061 20.805 ZNF341|zinc finger protein 341 -79196 (+) CHMP4B|charged multivesicular body protein 4B 94 (+)

56:1.000, -86:1.000

0:0.477, 52:0.922, -81:1.000

61:0.980, -90:0.968

-90:0.907

63:0.302, -93:0.754

chr16:30103244..30103360 20.768 TBX6|T-box 6 -55 (-) YPEL3|yippee-like 3 (Drosophila) 4243 (-)

30:1.000, -32:1.000

26:1.000, -27:0.987

35:0.704, -36:0.931

-36:0.922

37:0.367, -39:0.713

chr19:50651539..50651637 20.714 ZNF473|zinc finger protein 473 -122265 (+) IZUMO2|IZUMO family member 2 14820 (-)

28:1.000, -35:1.000

23:0.979, -31:0.968

32:0.691, -40:0.968

32:0.241, -39:0.871

-42:0.849

chr1:247095485..247095601 20.679 AHCTF1P1|AT hook containing transcription factor 1 pseudogene 1 AHCTF1|AT hook containing transcription factor 1 -851 (-) ZNF695|zinc finger protein 695 75769 (-)

-22:0.999, 41:0.541

-17:0.998

-26:0.662, 46:0.620

-29:0.432

chr1:156737166..156737290 20.667 HDGF|hepatoma-derived growth factor -15097 (-) PRCC|papillary renal cell carcinoma (translocation-associated) 64 (+)

-16:0.997, 48:0.985

-12:0.998

-21:0.783, 52:0.301

-23:0.348, 55:0.920

chr16:87984590..87984729 20.649 CA5A|carbonic anhydrase VA, mitochondrial -14512 (-) BANP|BTG3 associated nuclear protein 509 (+)

-15:1.000, 20:0.996, 60:1.000, -74:1.000

-10:0.956, 25:0.388, 56:1.000, -69:0.992

16:0.662, -19:0.936, 65:0.919, -78:0.936

13:0.581, -22:0.857, -81:0.313

chr19:4791508..4791642 20.600 MIR7-3HG|MIR7-3 host gene (non-protein coding) -22414 (+) FEM1A|fem-1 homolog a (C. elegans) 161 (+)

0:0.942, 51:0.993, -60:1.000

3:1.000, -65:0.909

55:0.931, -56:0.983

-53:0.917, 58:0.563

chr10:38383147..38383271 20.591 ZNF33A|zinc finger protein 33A -83614 (+) ZNF37A|zinc finger protein 37A 74 (+)

10:0.870, -35:1.000, 56:1.000

5:0.997, -40:0.997, 51:0.998

-31:0.968, 60:0.962

-28:0.754

chr16:67840552..67840704 20.562 RANBP10|RAN binding protein 10 -119 (-) TSNAXIP1|translin-associated factor X interacting protein 1 391 (+)

-20:0.968, 35:1.000

-15:0.310, 31:0.998

-36:0.680, 40:0.963

-27:0.223

chr10:74870144..74870251 20.560 P4HA1|prolyl 4-hydroxylase, alpha polypeptide I -13427 (-) NUDT13|nudix (nucleoside diphosphate linked moiety X)-type motif 13 54 (+)

6:0.979, -22:1.000

1:0.957, -18:0.999

-27:0.983

-29:0.920, 70:0.236

chr3:50397039..50397151 20.536 TMEM115|transmembrane protein 115 -157 (-) CACNA2D2|calcium channel, voltage-dependent, alpha 2/delta subunit 2 143865 (-)

-5:1.000, 50:1.000, -68:0.999

-1:0.995, 45:1.000, -73:0.834

-10:0.936, 54:0.980

-12:0.920, 57:0.920

chr1:54304239..54304366 20.533 TMEM48|transmembrane protein 48 -137 (-) YIPF1|Yip1 domain family, member 1 51133 (-)

-1:0.999, 28:0.530, -56:1.000, 67:1.000

-5:0.859, 24:0.844, -60:1.000, 63:0.972

-51:0.908, 72:0.270

-49:0.499

chr19:54024106..54024256 20.530 ZNF813|zinc finger protein 813 -53193 (+) ZNF331|zinc finger protein 331 92 (+)

-29:1.000, 84:0.997

20:0.959, -24:0.979, -88:0.994, 89:0.999

-33:0.968

-33:0.321

-36:0.849

chr1:45965776..45965921 20.525 TESK2|testis-specific kinase 2 -9015 (-) MMACHC|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria 91 (+)

9:0.996, -48:0.605, 68:0.818

14:0.958

5:0.264, 73:0.691, -100:0.503

2:0.238

chr11:86013130..86013242 20.466 EED|embryonic ectoderm development -56900 (+) C11orf73|chromosome 11 open reading frame 73 183 (+)

18:0.976, -50:0.971

1:1.000

22:0.935

25:0.857

chr11:65488277..65488371 20.458 RNASEH2C|ribonuclease H2, subunit C -49 (-) DKFZp761E198|adaptor protein 5 59497 (-)

26:0.999

0:0.883, 22:0.979

31:0.931

33:0.702

chr11:16760039..16760170 20.437 SOX6|SRY (sex determining region Y)-box 6 -262179 (-) C11orf58|chromosome 11 open reading frame 58 56 (+)

-31:1.000, 40:1.000

-35:0.999, 45:0.999

-26:0.983, 36:0.980

-24:0.864, 33:0.864

chr6_cox_hap2:2387898..2388023 20.428 None None (None) None None (None)

-17:1.000, 41:1.000

45:1.000

-13:0.919, 36:0.809

-10:0.302, 34:0.227

chr1:151138380..151138502 20.379 LYSMD1|LysM, putative peptidoglycan-binding, domain containing 1 -65 (-) SCNM1|sodium channel modifier 1 121 (+)

-11:0.891, -52:0.999

-16:0.970, -48:0.999

-7:0.595, -57:0.450

-4:0.238

chr10:103892641..103892765 20.364 LDB1|LIM domain binding 1 -12560 (-) PPRC1|peroxisome proliferator-activated receptor gamma, coactivator-related 1 102 (+)

16:0.999, 43:0.969, -54:0.997

12:0.964, 39:0.293, -49:0.981

21:0.596, 48:0.980, -58:0.241

23:0.427, 50:0.920

chr21:15755496..15755623 20.348 HSPA13|heat shock protein 70kDa family, member 13 -86 (-) SAMSN1|SAM domain, SH3 domain and nuclear localization signals 1 163090 (-)

-32:1.000, -56:0.239

-36:0.996

-27:0.968

-25:0.849

chr9:111882268..111882395 20.340 C9orf5|chromosome 9 open reading frame 5 -111 (-) C9orf4|chromosome 9 open reading frame 4 47198 (-)

14:0.994, -43:0.998

-47:0.895

10:0.980, -38:0.980

7:0.864, -36:0.920

chr6_mann_hap4:2223902..2224026 20.336 None None (None) None None (None)

-17:1.000, 41:1.000

45:1.000

-13:0.919, 36:0.809

-10:0.302, 34:0.227

chr19:52097714..52097841 20.292 ZNF175|zinc finger protein 175 -23230 (+) SIGLEC5|sialic acid binding Ig-like lectin 5 35880 (-)

20:0.953, -46:0.982, 53:1.000

16:0.977, 49:0.978, -50:0.996, -93:0.321

-41:0.236, 58:0.868

60:0.581

chr13:41706936..41707055 20.267 KBTBD6|kelch repeat and BTB (POZ) domain containing 6 -200 (-) KBTBD7|kelch repeat and BTB (POZ) domain containing 7 61462 (-)

-33:0.986, 54:0.995

-3:0.726, -28:0.923, 50:0.478

-37:0.221, 59:0.241

chr7:76751666..76751790 20.256 POMZP3|POM121 and ZP3 fusion -495181 (-) CCDC146|coiled-coil domain containing 146 218 (+)

-29:0.984, 29:1.000

34:0.992

-24:0.446, 25:0.296

-22:0.427

chr19:49947059..49947170 20.205 SLC17A7|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 -2368 (-) PIH1D1|PIH1 domain containing 1 7955 (-)

20:1.000, -41:0.999

15:0.996, -37:0.957

24:0.963, -46:0.506

27:0.855

chr1:6673616..6673738 20.201 KLHL21|kelch-like 21 (Drosophila) -10698 (-) PHF13|PHD finger protein 13 109 (+)

14:1.000, -45:0.996, 90:1.000

19:0.999, -49:0.991, 95:0.653

10:0.620, -40:0.219, 86:0.968

7:0.214, -38:0.349, 83:0.754

chr14:73493922..73494063 20.191 ZFYVE1|zinc finger, FYVE domain containing 1 -161 (-) RBM25|RNA binding motif protein 25 31217 (+)

7:0.957, -61:0.999, 69:0.992

64:0.472, -66:1.000

2:0.980, 73:0.518

0:0.302, 76:0.236

chr16:68482586..68482713 20.190 SMPD3|sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II) -168 (-) ZFP90|zinc finger protein 90 homolog (mouse) 81384 (+)

-31:1.000, 38:1.000, -66:0.979

-36:0.995, 42:0.999, 74:0.400

33:0.595

-27:0.374

31:0.229

chr8:144897943..144898071 20.162 SCRIB|scribbled homolog (Drosophila) -463 (-) PUF60|poly-U binding splicing factor 60KDa 13200 (-)

-28:0.986

-23:0.997, 31:0.809, -78:0.220

chr19:54480853..54480960 20.158 CACNG8|calcium channel, voltage-dependent, gamma subunit 8 -14547 (+) CACNG6|calcium channel, voltage-dependent, gamma subunit 6 14635 (+)

29:1.000, -32:1.000

24:0.911, -28:0.999

33:0.968, -37:0.980

36:0.849, -39:0.857

chr11:450193..450305 20.149 ANO9|anoctamin 9 -8246 (-) PTDSS2|phosphatidylserine synthase 2 47 (+)

0:0.998, 27:0.999

3:0.999, 31:0.997, -39:0.991

22:0.530

-7:0.436, 20:0.917

chr19:48833418..48833530 20.142 EMP3|epithelial membrane protein 3 -4640 (+) TMEM143|transmembrane protein 143 33795 (-)

-31:1.000, 31:0.999

-27:0.999

35:0.968, -36:0.775

-38:0.449, 38:0.754

chr1:153931137..153931256 20.137 CRTC2|CREB regulated transcription coactivator 2 -79 (-) SLC39A1|solute carrier family 39 (zinc transporter), member 1 4013 (-)

7:1.000, -64:1.000, 84:0.983

-68:0.995, 80:0.872

3:0.499, -59:0.983

-57:0.864

chr1:205744590..205744698 20.127 RAB7L1|RAB7, member RAS oncogene family-like 1 -66 (-) SLC41A1|solute carrier family 41, member 1 37523 (-)

-26:0.999, 36:1.000

-22:0.998, 31:1.000

-31:0.968, 40:0.968

-33:0.226

chr6_dbb_hap3:2169929..2170068 20.120 None None (None) None None (None)

-18:1.000, 40:1.000

44:1.000

-14:0.919, 35:0.809

-11:0.302, 33:0.227

chr19:55690493..55690612 20.100 C19orf51|chromosome 19 open reading frame 51 -12569 (-) SYT5|synaptotagmin V 185 (-)

26:1.000, -35:1.000

22:0.997, -30:0.933

31:0.980, -39:0.783

-42:0.360

chr4:18023772..18023886 20.100 LCORL|ligand dependent nuclear receptor corepressor-like -363 (-) SLIT2|slit homolog 2 (Drosophila) 2231507 (+)

-27:0.983, 35:0.948

-23:0.901

-32:0.267

42:0.917

chr19:44617384..44617534 20.097 LOC100379224|uncharacterized LOC100379224 -128 (-) ZNF225|zinc finger protein 225 97 (+)

17:1.000, -54:1.000, 73:0.999

12:1.000, -59:0.947, 68:0.810

21:0.931, -50:0.968, 77:0.499

21:0.975, -50:0.995, 77:0.983

24:0.702, -47:0.849

chr19:49224336..49224452 20.090 MAMSTR|MEF2 activating motif and SAP domain containing transcriptional regulator -1428 (-) RASIP1|Ras interacting protein 1 19512 (-)

-30:0.967, 31:0.999

26:0.964

-35:0.467, 35:0.301

-37:0.863, 38:0.920

chr19:13885160..13885263 20.080 MRI1|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae) -9820 (+) C19orf53|chromosome 19 open reading frame 53 54 (+)

-69:0.386

-88:0.236

chr2:68694463..68694590 20.078 FBXO48|F-box protein 48 -116 (-) APLF|aprataxin and PNKP like factor 238 (+)

28:0.994, -40:0.871

-35:0.274

21:0.917

chr6:157801074..157801194 20.022 TMEM242|transmembrane protein 242 -55917 (-) ZDHHC14|zinc finger, DHHC-type containing 14 1405 (+)

-25:0.999, 45:0.999

-30:0.999, -73:0.513

-21:0.936, 40:0.727

-18:0.864, 38:0.713

chr1:26324602..26324739 20.015 PAFAH2|platelet-activating factor acetylhydrolase 2, 40kDa -80 (-) EXTL1|exostoses (multiple)-like 1 23597 (+)

1:0.974, 51:1.000, -69:0.584

56:0.999

-2:0.983, 47:0.920

-5:0.920, 44:0.576, -62:0.444

chr6:30875829..30875942 20.011 DDR1|discoidin domain receptor tyrosine kinase 1 -19401 (+) GTF2H4|general transcription factor IIH, polypeptide 4, 52kDa 133 (+)

-17:1.000, 41:1.000

45:1.000

-13:0.919, 36:0.809

-10:0.302, 34:0.227

chr19:48866418..48866527 19.996 EMP3|epithelial membrane protein 3 -37638 (+) TMEM143|transmembrane protein 143 797 (-)

-28:1.000, 34:1.000

-24:0.937, 29:0.999

-33:0.980, 38:0.534

-35:0.920

chr7:92861553..92861669 19.986 HEPACAM2|HEPACAM family member 2 -5828 (-) CCDC132|coiled-coil domain containing 132 115 (+)

20:1.000, -48:1.000

24:0.996, -53:0.689

15:0.908, -44:0.963

13:0.499, -41:0.849

chr2:172543875..172543986 19.966 CYBRD1|cytochrome b reductase 1 -164975 (+) DYNC1I2|dynein, cytoplasmic 1, intermediate chain 2 94 (+)

-6:1.000, 38:0.881, -41:0.999

-2:1.000, -37:0.996

-11:0.801, 42:0.467, -46:0.885

45:0.920

chr16:11038278..11038398 19.965 DEXI|Dexi homolog (mouse) -2103 (-) CLEC16A|C-type lectin domain family 16, member A 105 (+)

17:0.997, -40:0.999

21:0.993, -45:0.453

12:0.595

10:0.238, -33:0.917

chr16:46918118..46918227 19.963 C16orf87|chromosome 16 open reading frame 87 -53084 (-) GPT2|glutamic pyruvate transaminase (alanine aminotransferase) 2 109 (+)

-24:0.999, 34:0.998

-29:0.996, 38:0.921

-20:0.936

-17:0.920, 27:0.657

chr17:7118403..7118504 19.947 DLG4|discs, large homolog 4 (Drosophila) -11859 (-) DLG4|discs, large homolog 4 (Drosophila) 2484 (-)

-31:0.985, 32:1.000

28:0.998

-35:0.775, 37:0.783

-38:0.449, 39:0.348

chr19:49228236..49228332 19.928 MAMSTR|MEF2 activating motif and SAP domain containing transcriptional regulator -5318 (-) RASIP1|Ras interacting protein 1 15622 (-)

-22:1.000, 39:1.000

-17:0.983, 35:0.996

-26:0.980, 44:0.980

43:0.203

-29:0.917, 46:0.917

chr20:25677488..25677618 19.900 ZNF337|zinc finger protein 337 -194 (-) LOC284801|uncharacterized LOC284801 512258 (-)

-10:0.997, -43:0.999, 59:0.999

-5:0.915, -38:0.982, 64:0.494

-47:0.387, 55:0.511

-47:0.958

-17:0.229, -50:0.702, 52:0.702

chr1:156736965..156737129 19.889 HDGF|hepatoma-derived growth factor -14916 (-) PRCC|papillary renal cell carcinoma (translocation-associated) 245 (+)

-12:0.752, 36:0.981

41:0.530

43:0.302, -80:0.251

chr16:12009917..12010059 19.887 GSPT1|G1 to S phase transition 1 -60 (-) GSPT1|G1 to S phase transition 1 530 (-)

-12:0.927, 36:0.959, 81:0.850

31:0.588, 85:0.987

-19:0.920

chr19:55709045..55709148 19.872 SYT5|synaptotagmin V -17503 (-) PTPRH|protein tyrosine phosphatase, receptor type, H 11768 (-)

28:0.995, -36:1.000

24:0.223, -31:0.958

33:0.919, -40:0.908

35:0.917, -43:0.511

chr14:97263510..97263625 19.865 PAPOLA|poly(A) polymerase alpha -294783 (+) VRK1|vaccinia related kinase 1 148 (+)

7:0.996, -25:1.000, -85:0.964

12:0.909, -20:1.000

3:0.374, -29:0.783, -89:0.680

-89:0.957

-32:0.227

chr18:9475298..9475424 19.852 TWSG1|twisted gastrulation homolog 1 (Drosophila) -140504 (+) RALBP1|ralA binding protein 1 236 (+)

25:0.999, -45:1.000

29:0.999, -50:0.999

20:0.609, -41:0.696

18:0.238, -38:0.864

chr17:7358804..7358920 19.844 CHRNB1|cholinergic receptor, nicotinic, beta 1 (muscle) -10012 (+) ZBTB4|zinc finger and BTB domain containing 4 23991 (-)

28:1.000, -35:0.997

23:0.978, -31:0.726

32:0.980, -40:0.908

-39:0.726

-42:0.657, -78:0.229

chr1:156024459..156024589 19.841 UBQLN4|ubiquilin 4 -1009 (-) LAMTOR2|late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 73 (+)

-21:0.999, 46:0.998, -58:1.000

-17:0.994, 50:0.836, -54:1.000

-26:0.885, 41:0.980

-25:0.484

17:0.449, -28:0.593, 39:0.864

chr10:124913601..124913714 19.820 HMX2|H6 family homeobox 2 -6020 (+) BUB3|budding uninhibited by benzimidazoles 3 homolog (yeast) 148 (+)

23:0.998, -38:1.000

18:0.987, -34:1.000

27:0.920, -43:0.968

-42:0.994

30:0.576, -45:0.764

chr19:49479584..49479692 19.819 FTL|ferritin, light polypeptide -10928 (+) GYS1|glycogen synthase 1 (muscle) 16804 (-)

25:1.000, -34:0.997

21:1.000, -29:0.973

30:0.980

32:0.864, -82:0.296

chr2:242448064..242448196 19.784 STK25|serine/threonine kinase 25 -99 (-) BOK|BCL2-related ovarian killer 50089 (+)

-14:1.000, 43:0.843, -63:0.226, -73:0.258, 82:0.999

-10:0.997, 38:0.971, -78:0.929, 86:0.998

-19:0.936

-21:0.917

chr12:96429405..96429527 19.783 LTA4H|leukotriene A4 hydrolase -51 (-) ELK3|ELK3, ETS-domain protein (SRF accessory protein 2) 158660 (+)

17:0.989, -40:0.987

21:0.984, -45:0.999

10:0.920

chr17:73780702..73780824 19.776 H3F3B|H3 histone, family 3B (H3.3B) -4922 (-) UNK|unkempt homolog (Drosophila) 127 (+)

-6:0.945, -62:1.000, 66:1.000

-10:0.964, -57:0.992, 71:1.000

62:0.775, -66:0.735

-66:0.813

0:0.436, 59:0.449, -69:0.368

chr12:32832065..32832182 19.769 FGD4|FYVE, RhoGEF and PH domain containing 4 -144860 (+) DNM1L|dynamin 1-like 34 (+)

-22:1.000, -64:0.817

-18:1.000, 23:0.994, -69:0.993

-27:0.980

-29:0.920

chr19:44555991..44556129 19.734 ZNF222|zinc finger protein 222 ZNF284|zinc finger protein 284 -26538 (+) ZNF223|zinc finger protein 223 122 (+)

9:0.942, -59:0.848, -80:0.995, 80:0.987

5:0.833, 76:0.993, -84:0.990

-54:0.931

13:0.851, -76:0.395, 84:0.741

-52:0.702

chr11:134123302..134123420 19.722 THYN1|thymocyte nuclear protein 1 -162 (-) ACAD8|acyl-CoA dehydrogenase family, member 8 89 (+)

25:1.000, -46:1.000

30:0.985, -50:0.998, -91:0.491

21:0.791, -41:0.983

-42:0.815

18:0.917, -39:0.917

chr16:15149999..15150110 19.712 NTAN1|N-terminal asparagine amidase -177 (-) RRN3|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae) 38074 (-)

-14:1.000, 57:1.000, -90:0.979

-18:0.990, 53:0.993, -94:0.797

-9:0.968, 62:0.931, -85:0.499

-7:0.849, 64:0.702

chr20:47805018..47805122 19.699 STAU1|staufen, RNA binding protein, homolog 1 (Drosophila) -157 (-) DDX27|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 30822 (+)

42:1.000, -73:0.705

-33:0.710, 37:0.999, -69:0.556

46:0.980

49:0.920, -80:0.449

chr19:55629086..55629205 19.696 PPP1R12C|protein phosphatase 1, regulatory subunit 12C -213 (-) TNNT1|troponin T type 1 (skeletal, slow) 29272 (-)

-34:0.993, 101:1.000

30:0.576, -39:0.998, 96:1.000

-30:0.691

-27:0.214

chr7:128864577..128864692 19.664 SMO|smoothened, frizzled family receptor -35922 (+) AHCYL2|adenosylhomocysteinase-like 2 195 (+)

-31:1.000, 75:0.441

-26:0.978

-35:0.980

-38:0.917

chr7:100888034..100888145 19.647 CLDN15|claudin 15 -5989 (-) FIS1|fission 1 (mitochondrial outer membrane) homolog (S. cerevisiae) 236 (-)

31:0.999, -32:1.000

26:0.669, -28:1.000

35:0.534, -37:0.980

-39:0.239

chr19:50145255..50145380 19.645 RRAS|related RAS viral (r-ras) oncogene homolog -1940 (-) SCAF1|SR-related CTD-associated factor 1 113 (+)

10:0.935, -39:0.999, 70:0.798

6:0.759, -34:0.998, 75:0.210

-43:0.609

-46:0.229

chr4:2420543..2420652 19.642 ZFYVE28|zinc finger, FYVE domain containing 28 -193 (-) LOC402160|uncharacterized LOC402160 100 (+)

29:1.000, -44:1.000

25:0.993, -39:0.540

34:0.980, -48:0.936

36:0.917, -51:0.864

chr2:217277055..217277184 19.621 MARCH4|membrane-associated ring finger (C3HC4) 4 -40412 (-) SMARCAL1|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 79 (+)

-20:1.000, 64:1.000, -99:0.999

-15:0.990, 60:1.000, -94:0.992

-24:0.919, 69:0.968

-24:0.248

-27:0.920, 71:0.855

chr17:17495034..17495168 19.613 PEMT|phosphatidylethanolamine N-methyltransferase -126 (-) RAI1|retinoic acid induced 1 89684 (+)

-24:1.000, 57:0.995

-28:0.641, 62:0.256

-19:0.968, 53:0.936

-20:0.997

-17:0.855, 50:0.920

chr12:133532873..133532977 19.604 ZNF605|zinc finger protein 605 -52 (-) ZNF26|zinc finger protein 26 30073 (+)

4:1.000, -27:1.000

8:0.913, -23:0.993

0:0.931, -32:0.968

-2:0.713, -34:0.855

chr5:178286868..178286986 19.586 ZNF354A|zinc finger protein 354A -129259 (-) ZNF354B|zinc finger protein 354B 72 (+)

15:0.974, -19:1.000

-15:0.395

10:0.691, -24:0.931

11:0.909, -23:0.994

8:0.214, -26:0.713

chr19:16607030..16607163 19.571 CALR3|calreticulin 3 -126 (-) C19orf44|chromosome 19 open reading frame 44 119 (+)

18:0.844, -66:0.905, 81:1.000

-7:0.306, 22:0.941, 76:0.999

13:0.221, -71:0.980, 85:0.963

-73:0.864, 88:0.754

chr11:72145626..72145736 19.536 CLPB|ClpB caseinolytic peptidase B homolog (E. coli) -31 (-) PDE2A|phosphodiesterase 2A, cGMP-stimulated 207798 (-)

15:1.000, -42:0.938, 78:0.852

20:0.995, 74:0.412

11:0.803, -37:0.464

11:0.242

8:0.290

chr7:150755072..150755214 19.532 CDK5|cyclin-dependent kinase 5 -128 (-) SLC4A2|solute carrier family 4, anion exchanger, member 2 (erythrocyte membrane protein band 3-like 1) 155 (+)

-19:0.995, 64:0.999, -87:1.000

-14:0.828, 69:0.999, -91:0.999

-23:0.791, 60:0.282, -82:0.530

-26:0.857, -80:0.917

chr19:48907000..48907108 19.531 GRIN2D|glutamate receptor, ionotropic, N-methyl D-aspartate 2D -8923 (+) GRWD1|glutamate-rich WD repeat containing 1 42013 (+)

-20:1.000, 34:1.000

-24:0.999, 30:0.755

-15:0.963, 39:0.397

-13:0.754, 41:0.657

chr2:39005271..39005379 19.523 SRSF7|serine/arginine-rich splicing factor 7 -26809 (-) GEMIN6|gem (nuclear organelle) associated protein 6 30 (+)

-32:0.346

-35:0.917

chr5:173043722..173043845 19.517 BOD1|biorientation of chromosomes in cell division 1 -110 (-) CPEB4|cytoplasmic polyadenylation element binding protein 4 271595 (+)

0:1.000, 47:0.656

4:0.273, 43:0.980

-4:0.980, 52:0.236

-7:0.864

chr11:43665688..43665800 19.510 TTC17|tetratricopeptide repeat domain 17 -285252 (+) 40 (+)

0:0.998, 24:0.993

-5:0.976, 19:0.859

3:0.604

chr18:77439373..77439541 19.508 -144 (-) FLJ25715|uncharacterized protein FLJ25715 284 (-)

-17:0.992, 55:0.999, -92:0.999, 96:0.999

-21:0.988, 51:0.995, -54:0.584, 92:0.975, -96:0.998

60:0.662, -87:0.254, 101:0.446

-10:0.432, 62:0.581

chr19:56652287..56652426 19.489 ZNF787|zinc finger protein 787 -19710 (-) ZNF444|zinc finger protein 444 249 (+)

-25:1.000, 69:0.999

-29:0.975

-20:0.968, 74:0.968

-21:0.979

-18:0.849, 76:0.855

chr2:2617267..2617393 19.485 MYT1L|myelin transcription factor 1-like -282246 (-) TSSC1|tumor suppressing subtransferable candidate 1 764226 (-)

0:1.000, 59:0.992

5:1.000, -42:0.992, 64:0.999

-3:0.816

-6:0.864

chr14:77923978..77924125 19.468 C14orf133|chromosome 14 open reading frame 133 -116 (-) AHSA1|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) 339 (+)

15:0.998, -55:0.999

-59:1.000

11:0.397

-7:0.449, -48:0.444

chr17:76250639..76250745 19.464 TMEM235|transmembrane protein 235 -23229 (+) SOCS3|suppressor of cytokine signaling 3 105465 (-)

-29:1.000, 40:1.000

-34:1.000, 35:1.000

-25:0.980, 44:0.980

-22:0.920

chr19:42748962..42749077 19.463 GSK3A|glycogen synthase kinase 3 alpha -2261 (-) ERF|Ets2 repressor factor 10195 (-)

28:0.991, -56:1.000

24:0.981, -51:0.408

33:0.704, -60:0.586

-60:0.886

35:0.251, -63:0.754

chr1:149871040..149871150 19.457 HIST2H2AB|histone cluster 2, H2ab HIST2H2BE|histone cluster 2, H2be -11582 (-) BOLA1|bolA homolog 1 (E. coli) 82 (+)

30:1.000, -36:1.000

-31:0.524, 35:0.998

26:0.691, -40:0.908

23:0.214, -43:0.499, 60:0.229

chr3:4344924..4345038 19.440 LRRN1|leucine rich repeat neuronal 1 -503882 (+) SETMAR|SET domain and mariner transposase fusion gene 27 (+)

13:1.000, -19:1.000

-14:0.842, 18:1.000

9:0.506, -23:0.983

6:0.436, -26:0.920

chr2:202316275..202316389 19.421 TRAK2|trafficking protein, kinesin binding 2 -44 (-) STRADB|STE20-related kinase adaptor beta 140 (+)

20:1.000

-13:0.317, 15:0.994

24:0.983

27:0.864

chr16:19535065..19535171 19.409 GDE1|glycerophosphodiester phosphodiesterase 1 -1742 (-) CCP110|centriolar coiled coil protein 110kDa 113 (+)

27:0.913, -37:1.000

22:0.375, -33:0.867

-42:0.803

-44:0.279

chr1:10532589..10532709 19.401 DFFA|DNA fragmentation factor, 45kDa, alpha polypeptide -27 (-) PEX14|peroxisomal biogenesis factor 14 2362 (+)

9:1.000, -41:1.000, 60:0.998

4:0.999, -46:0.991, 55:0.877

13:0.968, -37:0.963

16:0.855, -34:0.855, 67:0.499

chrUn_gl000223:149688..149792 19.393 None None (None) None None (None)

-4:1.000, 27:1.000

-8:0.913, 23:0.993

0:0.931, 32:0.968

2:0.713, 34:0.855

chr2:88991028..88991148 19.376 EIF2AK3|eukaryotic translation initiation factor 2-alpha kinase 3 -64110 (-) RPIA|ribose 5-phosphate isomerase A 127 (+)

22:1.000, -36:0.999

26:0.974, -41:0.721

17:0.968, -32:0.274

18:0.592

15:0.855, -29:0.214

chr8:124054093..124054203 19.361 ZHX2|zinc fingers and homeoboxes 2 -90449 (+) DERL1|Der1-like domain family, member 1 359 (-)

24:0.999, -38:1.000

20:0.947, -33:0.999

-42:0.919

31:0.499

chr2:63815944..63816078 19.344 WDPCP|WD repeat containing planar cell polarity effector -164 (-) MDH1|malate dehydrogenase 1, NAD (soluble) 102 (+)

27:1.000, -44:0.362

31:0.991

22:0.908, -40:0.931

23:0.392

20:0.511, -37:0.713

chr19:1241637..1241756 19.342 C19orf26|chromosome 19 open reading frame 26 -3782 (-) ATP5D|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit 56 (+)

10:0.999, -45:0.994, 51:0.521

5:0.241, -41:0.983, 55:0.951

14:0.868

17:0.593, -52:0.251

chr22:41682269..41682400 19.329 RANGAP1|Ran GTPase activating protein 1 -127 (-) ZC3H7B|zinc finger CCCH-type containing 7B 15180 (+)

28:0.904, -31:0.675

32:0.918

chr12:88535944..88536074 19.326 CEP290|centrosomal protein 290kDa -140 (-) TMTC3|transmembrane and tetratricopeptide repeat containing 3 139 (+)

-14:0.999, 23:1.000

-9:0.946, 19:0.910, 63:0.980

-18:0.234, 28:0.211

chr5:145562231..145562378 19.323 LARS|leucyl-tRNA synthetase -40 (-) RBM27|RNA binding motif protein 27 20813 (+)

1:0.994, -57:1.000, 92:0.845

-62:0.899

-3:0.983, -53:0.983

-5:0.302, -50:0.920, 85:0.920

chr19:51142549..51142651 19.320 SYT3|synaptotagmin III -1299 (-) SYT3|synaptotagmin III 525 (-)

-31:1.000, 31:0.989

26:0.981, -27:0.951

35:0.569, -36:0.983

-38:0.857

chr6:5003887..5004003 19.317 CDYL|chromodomain protein, Y-like -113720 (+) LOC285778|uncharacterized LOC285778 81 (+)

-27:1.000, 31:1.000

-31:0.999, 36:0.998

-22:0.980, 27:0.980

-20:0.916, 24:0.857

chr5:40756036..40756144 19.309 TTC33|tetratricopeptide repeat domain 33 -50 (-) PRKAA1|protein kinase, AMP-activated, alpha 1 catalytic subunit 42189 (-)

15:1.000, -26:0.999

11:0.781, -21:0.993

20:0.919, -30:0.443

-30:0.430

-33:0.436

chr12:107167936..107168061 19.287 RFX4|regulatory factor X, 4 (influences HLA class II expression) -89465 (+) RIC8B|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans) 464 (+)

-13:1.000, 52:0.998, -61:1.000

-9:0.964, 47:0.994, -57:0.998

-18:0.274, 56:0.735, -66:0.411

-65:0.270

59:0.368

chr5:85913628..85913746 19.261 EDIL3|EGF-like repeats and discoidin I-like domains 3 -2233023 (-) COX7C|cytochrome c oxidase subunit VIIc 71 (+)

5:1.000, -46:1.000

10:0.961, -41:0.993, 67:0.417

1:0.983, -50:0.968

1:0.468, -50:0.327

-1:0.920, -53:0.764

chr6_qbl_hap6:2168808..2168927 19.257 None None (None) None None (None)

-15:1.000, 43:1.000

48:1.000

-10:0.919, 39:0.809

-8:0.302, 36:0.227

chr19:58816586..58816705 19.231 ZNF8|zinc finger protein 8 -26269 (+) ERVK3-1|endogenous retrovirus group K3, member 1 83 (+)

-27:1.000, 34:0.998

-22:0.998, 30:0.999, -65:0.740

-31:0.691

-31:0.999, 38:0.203

-34:0.223

chr19:507880..507982 19.216 TPGS1|tubulin polyglutamylase complex subunit 1 -389 (+) CDC34|cell division cycle 34 homolog (S. cerevisiae) 23780 (+)

25:1.000, -36:1.000

21:1.000, -31:1.000

30:0.980, -40:0.569

32:0.365

chr5:57878758..57878880 19.215 GAPT|GRB2-binding adaptor protein, transmembrane -91525 (+) RAB3C|RAB3C, member RAS oncogene family 100 (+)

22:0.996, -36:1.000

27:0.520

18:0.894, -31:0.980

15:0.499, -29:0.920

chr19:36239188..36239320 19.213 PSENEN|presenilin enhancer 2 homolog (C. elegans) -2735 (+) LIN37|lin-37 homolog (C. elegans) 7 (+)

44:1.000, -57:1.000

-18:0.995, 48:0.924, -53:0.997

39:0.920, -62:0.936

37:0.713, -64:0.239

chr19:54618712..54618810 19.211 NDUFA3|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa -12595 (+) PRPF31|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae) 66 (+)

23:1.000, -28:0.996

-3:0.368, 18:0.978, -24:0.815

27:0.980

30:0.864

chr9:102861336..102861475 19.196 ERP44|endoplasmic reticulum protein 44 -84 (-) INVS|inversin 76 (+)

5:0.802, -53:1.000

-57:0.903

-48:0.968

-46:0.849

chr22:20861775..20861881 19.194 KLHL22|kelch-like 22 (Drosophila) -11706 (-) MED15|mediator complex subunit 15 38 (+)

4:0.999, -24:0.998

-19:0.984

0:0.690, -28:0.449

0:0.215, -28:0.280

chr17:73851561..73851679 19.180 WBP2|WW domain binding protein 2 -182 (-) TRIM47|tripartite motif containing 47 22443 (-)

-30:1.000, 32:1.000

-26:1.000, 27:0.495

-35:0.983

-37:0.857, 39:0.857

chr12:6961600..6961742 19.168 USP5|ubiquitin specific peptidase 5 (isopeptidase T) -342 (+) TPI1|triosephosphate isomerase 1 14967 (+)

17:0.998, -36:0.972, 88:0.540

12:0.750

21:0.450, 83:0.668

24:0.302, 81:0.849, -99:0.857

chr6:116989934..116990028 19.147 ZUFSP|zinc finger with UFM1-specific peptidase domain -45 (-) KPNA5|karyopherin alpha 5 (importin alpha 6) 12386 (+)

31:1.000

-9:0.787, 27:1.000

36:0.963, 69:0.205

38:0.754

chr16:30908456..30908561 19.138 CTF1|cardiotrophin 1 -566 (+) FBXL19-AS1|FBXL19 antisense RNA 1 (non-protein coding) 26005 (-)

10:0.989, -24:1.000

5:0.581, -20:0.954

14:0.691, -29:0.701

17:0.214, -31:0.849

chr3:183892431..183892566 19.115 DVL3|dishevelled, dsh homolog 3 (Drosophila) -19133 (+) AP2M1|adaptor-related protein complex 2, mu 1 subunit 109 (+)

15:0.675, 81:1.000

-67:0.964, 77:0.929

20:0.229, 86:0.919

22:0.863, 88:0.250

chr3:4534896..4535021 19.114 SUMF1|sulfatase modifying factor 1 -25995 (-) ITPR1|inositol 1,4,5-trisphosphate receptor, type 1 73 (+)

25:0.998, -35:1.000

29:0.243, -40:1.000

20:0.302, -31:0.936

18:0.849, -28:0.917

chr11:74109838..74109952 19.090 PGM2L1|phosphoglucomutase 2-like 1 -405 (-) KCNE3|potassium voltage-gated channel, Isk-related family, member 3 68701 (-)

28:0.999, -29:1.000

-33:0.979

-24:0.980, 24:0.868

21:0.431, -22:0.920

chr22:29168586..29168693 19.086 CHEK2|checkpoint kinase 2 -30236 (-) CCDC117|coiled-coil domain containing 117 5 (+)

-11:0.999, 30:0.992

-7:0.988, 34:0.808

-16:0.354

-18:0.368, -31:0.917

chr2:54950519..54950644 19.084 SPTBN1|spectrin, beta, non-erythrocytic 1 -165016 (+) EML6|echinoderm microtubule associated protein like 6 1567 (+)

25:1.000, -32:0.999

30:0.997, -36:1.000

21:0.931, -27:0.506

21:0.233

18:0.702, -25:0.436

chr20:62289872..62289989 19.057 RTEL1|regulator of telomere elongation helicase 1 -249 (+) RTEL1|regulator of telomere elongation helicase 1 31218 (+)

-31:1.000, 31:1.000

-26:0.878, 27:0.998

-35:0.894, 36:0.716

-38:0.512, 38:0.512

chr11:113644465..113644584 19.056 ZW10|ZW10, kinetochore associated, homolog (Drosophila) -40 (-) CLDN25|claudin 25 5993 (+)

16:1.000, -42:0.999

20:1.000, -47:0.998

11:0.980, -38:0.232

9:0.365

chrX:106045753..106045869 19.040 RNF128|ring finger protein 128 -75803 (+) TBC1D8B|TBC1 domain family, member 8B (with GRAM domain) 170 (+)

-28:0.982, 31:0.999

-32:0.969

-23:0.309, 27:0.980

24:0.864

chr18:56806960..56807081 19.034 ZNF532|zinc finger protein 532 -275671 (+) SEC11C|SEC11 homolog C (S. cerevisiae) 127 (+)

28:0.999, -40:1.000

32:0.739, -45:1.000

23:0.885, -36:0.620

21:0.432

chr19:51014491..51014633 19.030 JOSD2|Josephin domain containing 2 -152 (-) ASPDH|aspartate dehydrogenase domain containing 2593 (-)

-31:0.999, -62:0.961, 65:0.993

-26:0.974, 70:0.846

-35:0.868, 61:0.301, -66:0.894

-38:0.581, 58:0.365, -69:0.645

chr12:861518..861634 19.007 NINJ2|ninjurin 2 -88861 (-) WNK1|WNK lysine deficient protein kinase 1 580 (+)

-2:0.607, -43:1.000, 57:0.999

-6:0.932, -38:0.899, 62:0.995

-47:0.980

-50:0.864

chr4:152682150..152682267 18.997 PET112|PET112 homolog (yeast) -67 (-) FBXW7|F-box and WD repeat domain containing 7 591688 (-)

-14:0.999, 45:0.996

-19:0.998

-10:0.645, 40:0.270

-7:0.373

-7:0.238

chr11:82997405..82997525 18.994 CCDC90B|coiled-coil domain containing 90B -60 (-) DLG2|discs, large homolog 2 (Drosophila) 395986 (-)

33:1.000, -35:0.476, -70:0.405

-7:0.473, 29:0.590, -39:0.943

38:0.931, -65:0.657

37:0.923

40:0.702

chr19:3435245..3435365 18.970 NFIC|nuclear factor I/C (CCAAT-binding transcription factor) -68690 (+) 27534 (-)

30:1.000, -33:0.987

26:1.000, -28:0.762

35:0.983

37:0.250, -40:0.427

chr19:19887250..19887379 18.938 LOC284440|uncharacterized LOC284440 -109 (-) ZNF506|zinc finger protein 506 45238 (-)

11:1.000

16:0.998

7:0.980, -41:0.816, 96:0.816

4:0.857, -39:0.920, 98:0.917

chr19:37861878..37862014 18.928 HKR1|HKR1, GLI-Kruppel zinc finger family member -36391 (+) ZNF527|zinc finger protein 527 135 (+)

9:0.952, -34:0.999

5:0.925, -38:0.999

-29:0.963

-27:0.855

chr8:28747739..28747885 18.912 INTS9|integrator complex subunit 9 -115 (-) HMBOX1|homeobox containing 1 105 (+)

-9:0.998, 62:0.997, -85:0.996

-14:0.808, 66:0.672, -90:0.580

-5:0.301, 57:0.980, -81:0.727

-2:0.920, 55:0.920, -78:0.702

chr1:22110122..22110229 18.910 USP48|ubiquitin specific peptidase 48 -476 (-) LDLRAD2|low density lipoprotein receptor class A domain containing 2 28631 (+)

-18:1.000, 25:1.000

-13:0.999, 21:0.998

-22:0.509, 30:0.919

-25:0.414, 32:0.857

chr10:44144313..44144422 18.905 ZNF32|zinc finger protein 32 -61 (-) CXCL12|chemokine (C-X-C motif) ligand 12 736132 (-)

-32:1.000, 41:1.000

-28:0.983, 36:0.620

-37:0.980, 45:0.968

-39:0.917, 48:0.855

chrX:149736792..149736910 18.890 MAMLD1|mastermind-like domain containing 1 -123069 (+) MTM1|myotubularin 1 195 (+)

-14:1.000

-18:0.983

-21:0.920

chr2:241525722..241525833 18.885 RNPEPL1|arginyl aminopeptidase (aminopeptidase B)-like 1 -17669 (+) CAPN10|calpain 10 452 (+)

-1:0.329, 17:1.000

13:0.996

22:0.894

24:0.499

chr16:2205637..2205763 18.876 RAB26|RAB26, member RAS oncogene family -6955 (+) TRAF7|TNF receptor-associated factor 7 81 (+)

-30:0.981, 38:1.000

42:0.457

33:0.774

-23:0.444, 31:0.713

chr11:46134671..46134775 18.856 GYLTL1B|glycosyltransferase-like 1B -190507 (+) PHF21A|PHD finger protein 21A 8274 (-)

-26:1.000, 27:1.000

-22:1.000, 22:0.990

-31:0.716, 31:0.936

12:0.251

chr20:48732474..48732588 18.853 UBE2V1|ubiquitin-conjugating enzyme E2 variant 1 -43 (-) TMEM189|transmembrane protein 189 37659 (-)

-16:0.997, 18:1.000

14:1.000, -20:0.839

23:0.980

-9:0.857

chr19:489011..489129 18.840 ODF3L2|outer dense fiber of sperm tails 3-like 2 -14142 (-) MADCAM1|mucosal vascular addressin cell adhesion molecule 1 7406 (+)

15:0.999, 56:0.656

11:0.995, 52:0.687

20:0.775

22:0.449

chr8:74884639..74884773 18.839 TCEB1|transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C) -195 (-) TMEM70|transmembrane protein 70 3711 (+)

6:1.000, 67:1.000

2:0.999, 63:0.998, -78:0.999

11:0.919, 72:0.936

13:0.864, 74:0.864

chr8:145550578..145550697 18.838 DGAT1|diacylglycerol O-acyltransferase 1 -63 (-) SCRT1|scratch homolog 1, zinc finger protein (Drosophila) 9249 (-)

9:1.000, -32:1.000

5:1.000, -36:1.000, 47:0.950

14:0.868, -27:0.868

chr11:107436420..107436534 18.836 ALKBH8|alkB, alkylation repair homolog 8 (E. coli) -33 (-) ELMOD1|ELMO/CED-12 domain containing 1 25334 (+)

-3:1.000

0:0.962, 31:0.217

-8:0.967

-10:0.215

chr12:51477402..51477519 18.832 CSRNP2|cysteine-serine-rich nuclear protein 2 -84 (-) TFCP2|transcription factor CP2 89107 (-)

-9:0.997, 33:1.000

-14:0.997, 28:0.967

-5:0.691, 37:0.604

chr10:43048317..43048430 18.821 ZNF37BP|zinc finger protein 37B, pseudogene -171 (-) ZNF33B|zinc finger protein 33B 85625 (-)

-2:0.992, 43:1.000, -48:1.000

2:0.997, -43:0.997, 48:1.000

39:0.968, -52:0.967

39:0.901

36:0.754

chr6_mcf_hap5:2257777..2257889 18.820 None None (None) None None (None)

-10:1.000, 48:1.000

53:1.000

-5:0.919, 44:0.809

-3:0.302, 41:0.227

chr21:35288128..35288240 18.819 ATP5O|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit -92 (-) MRPS6|mitochondrial ribosomal protein S6 SLC5A3|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 157657 (+)

-22:0.980, 31:0.992

-27:0.958

-18:0.296, 35:0.980

38:0.920

chr19:46234175..46234306 18.802 FBXO46|F-box protein 46 -93 (-) 37875 (-)

-4:1.000, -37:1.000, 74:0.847

0:0.951, -41:0.999, 79:0.325

-8:0.668, -32:0.607

-11:0.849

chr3:113775373..113775496 18.788 KIAA1407|KIAA1407 -23 (-) QTRTD1|queuine tRNA-ribosyltransferase domain containing 1 172 (+)

17:0.992, -41:1.000

21:0.998, -46:0.965

-37:0.983

-34:0.920

chr19:54606028..54606165 18.770 OSCAR|osteoclast associated, immunoglobulin-like receptor -1977 (-) NDUFA3|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa 70 (+)

43:1.000, -52:1.000

47:1.000, -48:1.000

38:0.775, -57:0.775

36:0.436, -59:0.436

chr8:67579541..67579690 18.744 VCPIP1|valosin containing protein (p97)/p47 complex interacting protein 1 -121 (-) C8orf44-SGK3|C8orf44-SGK3 readthrough C8orf44|chromosome 8 open reading frame 44 207 (+)

-20:0.983, 77:0.999, -91:0.998

72:0.537, -96:0.923

81:0.229

-27:0.920, 84:0.863

chr12:57881697..57881828 18.722 ARHGAP9|Rho GTPase activating protein 9 -8132 (-) MARS|methionyl-tRNA synthetase 30 (+)

-29:0.949, 31:1.000

-33:0.953, 36:1.000

27:0.691

24:0.223

chr19:51611669..51611802 18.704 CTU1|cytosolic thiouridylase subunit 1 homolog (S. pombe) -94 (-) SIGLEC9|sialic acid binding Ig-like lectin 9 16484 (+)

-16:0.985, -50:0.994, 51:0.986, -97:0.208

-11:0.996, -45:0.503, 56:0.741, 89:0.988

47:0.604, -54:0.619

chr11:2421840..2421968 18.696 CD81|CD81 molecule -23357 (+) TSSC4|tumor suppressing subtransferable candidate 4 92 (+)

-5:0.997, -44:0.999, 52:0.938

56:0.826

-1:0.894, -49:0.774

1:0.657, -51:0.702

chr12:56710122..56710232 18.696 CNPY2|canopy 2 homolog (zebrafish) -198 (-) PAN2|PAN2 poly(A) specific ribonuclease subunit homolog (S. cerevisiae) 17312 (-)

-29:1.000, 34:0.984

-24:1.000, 30:0.505

15:0.936, -33:0.963, 39:0.716

-33:0.280

12:0.260, -36:0.764, 41:0.512

chr11:114310054..114310170 18.684 RBM7|RNA binding motif protein 7 -38710 (+) REXO2|REX2, RNA exonuclease 2 homolog (S. cerevisiae) 109 (+)

27:0.991, -35:0.884

23:0.962, -30:0.796

chr17:27279373..27279515 18.674 PHF12|PHD finger protein 12 -948 (-) SEZ6|seizure related 6 homolog (mouse) 53581 (-)

15:1.000, -74:0.988

11:0.785, -22:0.975, -69:0.860

20:0.907, -78:0.783

19:0.778

22:0.657, -81:0.348

chr3:50388499..50388603 18.645 NPRL2|nitrogen permease regulator-like 2 (S. cerevisiae) -66 (-) TMEM115|transmembrane protein 115 8359 (-)

29:0.999, -32:0.998

-8:0.464, 24:0.481, -28:0.996

33:0.919, -37:0.334

36:0.857, -39:0.920

Examples of peaks fitted within regions

Complementary Motifs Enriched In Peaks:

Motif Name

Sequence Logo

Motif Ensemble Enrichment (Motif Ensemble log-Likelihood Ratio)

Enrichment (log-Likelihood Ratio)

Precision and Recall

Prediction - Observation Correlation

Enrichment at Binding Sites

Number of Positively Predicted Peaks

denovo_WM_8 40.867 (1855.155) 40.867 (1855.155) 0.9180 0.6279 26.8263 3022/36955
ZNF143.p2 49.98 (1955.809) 33.023 (1748.599) 0.9402 0.5634 14.3887 5365/36955
denovo_WM_12 56.627 (2018.239) 18.575 (1460.915) 0.8717 0.5292 12.412 3761/36955
STAT5{A,B}.p2 58.64 (2035.71) 2.081 (366.381) 0.5297 0.2175 8.2143 1039/36955
denovo_WM_14 61.788 (2061.858) 11.094 (1203.181) 0.7994 0.4626 8.5302 4314/36955

Contribution and Correlation Plots

Top Motifs Enriched In Peaks:

Motif Name

Sequence Logo

Enrichment (log-Likelihood Ratio)

Precision and Recall

Prediction - Observation Correlation

Enrichment at Binding Sites

Number of Positively Predicted Peaks

denovo_WM_8 40.867 (1855.155) 0.9180 0.6279 26.8263 3022/36955
denovo_WM_7 39.384 (1836.675) 0.9117 0.6256 27.5404 2916/36955
denovo_WM_18 39.353 (1836.286) 0.9124 0.632 29.5521 2780/36955
denovo_WM_17 38.333 (1823.16) 0.9021 0.64 42.3756 2215/36955
denovo_WM_10 36.116 (1793.371) 0.9289 0.6069 16.5148 4382/36955
denovo_WM_16 33.62 (1757.567) 0.9036 0.6174 24.1159 2949/36955
denovo_WM_15 33.38 (1753.972) 0.8943 0.6178 39.9949 2118/36955
ZNF143.p2 33.023 (1748.599) 0.9402 0.5634 14.3887 5365/36955
denovo_WM_6 32.807 (1745.324) 0.9061 0.6123 20.9514 3129/36955
denovo_WM_5 32.269 (1737.048) 0.9067 0.6102 21.7348 3078/36955

Downloads

ZNF143 Replicate 1

ZNF143 Replicate 2

BG Replicate 1